BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030308
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MD7|CI085_HUMAN Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1
SV=1
Length = 179
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 4 NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKY 62
N +R KHQN +++K K + + +++ KL GVC RCK+ ++W+ +Y KY
Sbjct: 7 NVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKY 61
Query: 63 KPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGRDL 112
KPLS+P KC +C ++ V+ +YH +C CA E VCAKC + D VI L
Sbjct: 62 KPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVIPWSL 111
>sp|Q9CQ90|CI085_MOUSE Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1
Length = 155
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
MSS N +R KHQN + +K K + + +++ KL GVC RCK+ ++W+
Sbjct: 1 MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
+Y KYKPLS+P KC +C ++ V+ +YH +C CA E VCAKC + + VI
Sbjct: 56 VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107
>sp|Q68FU5|CI085_RAT Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 155
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
MSS N +R KHQN + +K K + + +++ KL GVC RCK+ ++W+
Sbjct: 1 MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
+Y KYKPLS+P KC +C ++ V+ +YH +C CA + VCAKC + VI
Sbjct: 56 VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVI 107
>sp|B1MYF5|GLYA_LEUCK Serine hydroxymethyltransferase OS=Leuconostoc citreum (strain
KM20) GN=glyA PE=3 SV=1
Length = 410
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 30/126 (23%)
Query: 55 WKRRYG--KYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC--SRVDRVIGR 110
+KR YG +Y + E R K Y N+ P + N A D+++G
Sbjct: 56 YKRYYGGTEYVDVVEQLAIDRL-KALFGAEYANVQPHSGSQANAAAYMAFLQPGDKILGM 114
Query: 111 DL-------------------------AEVEAEQKMLEAALKNARERDRRILLRAVSSYT 145
DL + E+EQ EA K ARE ++++ S+Y+
Sbjct: 115 DLDAGGHLTHGAKVSFSGKMYQSYTYGLDAESEQLDYEAIAKQAREVQPQMIVAGASAYS 174
Query: 146 AILDLN 151
I+D N
Sbjct: 175 RIIDFN 180
>sp|Q6C3J3|MRH4_YARLI ATP-dependent RNA helicase MRH4, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRH4 PE=3 SV=1
Length = 514
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 1 MSSNSSRR------GAPKHQNRY-AWKPKAGQKINEREVGGKLRPYPEITGV 45
M +NS RR G P R+ A +PK K+N RE GGK +P P TGV
Sbjct: 1 MFANSLRRITKPCLGVPDMAVRHIAMRPKPKVKVNSREGGGKGKPRPS-TGV 51
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2
PE=2 SV=1
Length = 412
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 70 KCQRCTKRAVRQAYHNLCPGCAKE-QNVCAKCCSRVDRVIGRD------LAEVEAEQKML 122
KC C R VR L PG ++ Q+VC+ C + + +D +V E K+L
Sbjct: 158 KCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKIL 217
Query: 123 EAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKN 162
E + + +RI + ++ V F Q K++
Sbjct: 218 EVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLFVQEKEH 257
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 68 PAKCQRCTKRAVRQAY----HNL-CPGCAKEQNVCAKCCSRVDRVIGRDLAEVEAEQKML 122
P +C C++ A+ + H++ C C++ C KC + + + RD EVE
Sbjct: 827 PTECLVCSELALLIHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKRDSTEVECS---- 882
Query: 123 EAALKNARERDRRILLRAVSSYTAILDLNICVSFC---QVKKNFKC 165
++ D+R L+ + + ++ I C Q+K F+C
Sbjct: 883 ----PSSESTDQRKLMEELQNRYRQMEERITCPICIDDQIKLVFQC 924
>sp|Q2INT9|DNLJ_ANADE DNA ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=ligA
PE=3 SV=1
Length = 687
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 56 KRRYGKYKPLSEPAKCQRCTKRAVRQAYHNL--CPGCAKEQNVCAKCCSRVDR 106
+RR G+ +P PA+C C R VR+ + C G A + + C R
Sbjct: 401 ERRTGEERPFRFPAECPVCGARVVREEGEKVYRCTGAACPAQLVGRICHFAQR 453
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 24 GQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAY 83
Q+ ER+ GG P P T P + + P E A+C C++ A+ +
Sbjct: 848 AQRFRERQAGGGAAPGPRQTLGTPNTVTNL-----HVGAAPGPEAAECLVCSELALLVLF 902
Query: 84 -----HNLCPGCAKEQNVCAKCCSRVDRVIGRDLAEV-------EAEQKMLEAALKNARE 131
+C CA+ C +C V + + D +EV ++++E R+
Sbjct: 903 SPCQHRTVCEECARRMKKCIRCQVVVSKKLRPDGSEVASAAPAPGPPRQLVEELQSRYRQ 962
Query: 132 RDRRI 136
+ RI
Sbjct: 963 MEERI 967
>sp|Q9PL77|PNP_CHLMU Polyribonucleotide nucleotidyltransferase OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=pnp PE=3 SV=1
Length = 693
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 55 WKRRYGKYKPLSE----PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGR 110
W++ GK K LS P Q +R+ + ++++ + ++ +
Sbjct: 221 WQKAIGKEKQLSAVLDLPEDVQNVVSNFIREKFEKALS--FRDRDALEQVSKELEESVVA 278
Query: 111 DLAEVEAEQKML--EAALKNARERDRRILLRAVS------SYTAILDLNICVSFCQVKKN 162
+L + E++ +L +AA KNA+ R L+R + S T I ++I VSF + +
Sbjct: 279 NLVQEESDFSLLNVKAAFKNAKSNQMRALIRDLGIRVDGRSTTEIRPISIEVSFLP-RTH 337
Query: 163 FKCFF 167
C F
Sbjct: 338 GSCLF 342
>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1
Length = 412
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 70 KCQRCTKRAVRQAYHNLCPGCAKE-QNVCAKCCSRVDRVIGRD------LAEVEAEQKML 122
KC C R VR L PG ++ Q+VC+ C + + +D +V E K+L
Sbjct: 158 KCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKIL 217
Query: 123 EAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKN 162
E + + +RI + ++ V Q K++
Sbjct: 218 EVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEH 257
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1
SV=1
Length = 412
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 70 KCQRCTKRAVRQAYHNLCPGCAKE-QNVCAKCCSRVDRVIGRD------LAEVEAEQKML 122
KC C R VR L PG ++ Q+VC+ C + + +D +V E K+L
Sbjct: 158 KCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKIL 217
Query: 123 EAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKN 162
E + + +RI + ++ V Q K++
Sbjct: 218 EVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEH 257
>sp|Q9ZHI0|DNLJ_THEFI DNA ligase OS=Thermus filiformis GN=ligA PE=1 SV=2
Length = 670
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 56 KRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVC-AKCCSRVDRVIGRDLAE 114
+RR G+ +P+ P C C R V++ + CP +C AK + R +
Sbjct: 394 ERRTGEERPIRWPETCPECGHRLVKEGKVHRCP-----NPLCPAKRFEAIRHYASRKAMD 448
Query: 115 VEA-EQKMLEAALKNARERD 133
+E +K++E L+ RD
Sbjct: 449 IEGLGEKLIERLLEKGLVRD 468
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1
SV=1
Length = 412
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 70 KCQRCTKRAVRQAYHNLCPGCAKE-QNVCAKCCSRVDRVIGRD------LAEVEAEQKML 122
KC C R VR L PG ++ Q+VC+ C + + +D +V E K+L
Sbjct: 158 KCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKIL 217
Query: 123 EAALKNARERDRRILLRAVSSYTAILDLNICVSFCQVKKN 162
E + + +RI + ++ V Q K++
Sbjct: 218 EVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEH 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,325,265
Number of Sequences: 539616
Number of extensions: 2457503
Number of successful extensions: 8792
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8777
Number of HSP's gapped (non-prelim): 35
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)