Query 030308
Match_columns 179
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 19:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cy3a_ a.138.1.1 (A:) Cytochr 53.3 1.5 0.00011 30.3 0.4 48 41-94 38-99 (118)
2 d1v5na_ g.49.1.3 (A:) Pdi-like 40.1 1.9 0.00014 29.4 -0.9 38 68-109 47-84 (89)
3 d2apob1 g.41.16.1 (B:403-457) 39.3 9.3 0.00068 24.3 2.5 28 69-110 5-32 (55)
4 d1u5sb2 g.39.1.3 (B:103-137) P 33.1 5.9 0.00043 23.3 0.6 9 96-104 2-10 (35)
5 d2jnea1 g.41.18.1 (A:1-71) Hyp 30.3 0.93 6.8E-05 30.8 -3.8 48 42-101 1-48 (71)
6 d1ibia2 g.39.1.3 (A:145-175) C 29.5 6.4 0.00047 22.5 0.4 11 96-106 2-12 (31)
7 d2cora2 g.39.1.3 (A:8-42) Pinc 28.0 2.8 0.0002 24.9 -1.5 12 43-54 8-19 (35)
8 d2ey4e1 g.41.16.1 (E:4-55) Rib 27.1 8.3 0.0006 24.4 0.6 28 69-110 3-30 (52)
9 d1or7a1 a.4.13.2 (A:120-187) S 26.9 21 0.0016 21.5 2.7 26 116-141 6-31 (68)
10 d3caoa_ a.138.1.1 (A:) Cytochr 26.7 13 0.00095 25.1 1.7 47 46-94 36-89 (103)
11 d1jm7b_ g.44.1.1 (B:) bard1 RI 26.7 61 0.0045 20.6 5.2 23 83-105 42-66 (97)
12 d1x6ha1 g.37.1.1 (A:44-80) Tra 24.6 9.3 0.00067 22.5 0.5 10 95-104 5-14 (37)
13 d2cu8a1 g.39.1.3 (A:8-37) Cyst 21.6 13 0.00097 21.1 0.7 12 95-106 3-14 (30)
14 d1vqo11 g.41.8.2 (1:1-56) Ribo 20.5 9.2 0.00067 24.6 -0.2 14 92-105 29-42 (56)
15 d1nj1a2 d.68.5.1 (A:411-481) C 20.4 6.4 0.00047 25.5 -1.0 20 64-83 47-66 (71)
No 1
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=53.28 E-value=1.5 Score=30.31 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=31.6
Q ss_pred CccCc-chhhHHHHHHHHHhCCCCCCCCccccccccc-------------chhhHHHHhcChhHHhhc
Q 030308 41 EITGV-CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------------RAVRQAYHNLCPGCAKEQ 94 (179)
Q Consensus 41 ~~~gv-CqRC~eiIeWK~kY~KYKpLt~p~KC~kC~q-------------ktV~~AYh~iC~~CA~~~ 94 (179)
.+.+| |.-|+..++ ......+...|..|+. .....|||..|..|-.+.
T Consensus 38 ~H~~v~C~~CHh~~~------~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~a~h~~C~~CH~~~ 99 (118)
T d2cy3a_ 38 KHATVECVQCHHTLE------ADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKAL 99 (118)
T ss_dssp GGTTSCHHHHSTTTT------TTTTCCCCTTSTTSSCCCCCCCSTTTTCTTSHHHHHHHHHHHHHHHH
T ss_pred hhCCCCccccccchh------hcccCCccccccCCCcccccccCCcchhhhhhhhhhhhHHHHHHHHH
Confidence 34455 999997653 2222334556888884 335679999999998764
No 2
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.06 E-value=1.9 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=29.0
Q ss_pred cccccccccchhhHHHHhcChhHHhhccccccccCccceecC
Q 030308 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (179)
Q Consensus 68 p~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (179)
+.+|..|......+.|+ |..| .+.+...|...++.+..
T Consensus 47 ~~~C~~C~~~~~g~~Y~--C~~C--~f~LH~~CA~~P~~~~~ 84 (89)
T d1v5na_ 47 VYTCDKCEEEGTIWSYH--CDEC--DFDLHAKCALNEDTKES 84 (89)
T ss_dssp SCCCTTTSCCCCSCEEE--CTTT--CCCCCHHHHHCSSCSSC
T ss_pred CCEeCCCCCCcCCcEeE--eccC--CCEecHHHcCCCcccCC
Confidence 56899999887778886 8988 57888888766655443
No 3
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=39.34 E-value=9.3 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=19.8
Q ss_pred ccccccccchhhHHHHhcChhHHhhccccccccCccceecCC
Q 030308 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGR 110 (179)
Q Consensus 69 ~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k~~~~i~~~ 110 (179)
.+|..|+..|. ..+|+.||.+.....|.
T Consensus 5 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~P~ 32 (55)
T d2apob1 5 KKCPKCGLYTL--------------KEICPKCGEKTVIPKPP 32 (55)
T ss_dssp EECTTTCCEES--------------SSBCSSSCSBCBCCCCC
T ss_pred eeCCcccceec--------------cccCcCCCCccCccCCC
Confidence 56777777554 36899999887766553
No 4
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.08 E-value=5.9 Score=23.32 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.6
Q ss_pred ccccccCcc
Q 030308 96 VCAKCCSRV 104 (179)
Q Consensus 96 vCaKC~k~~ 104 (179)
+||+|.+|-
T Consensus 2 vCA~CekPF 10 (35)
T d1u5sb2 2 VCAKCEKPF 10 (35)
T ss_dssp BCTTTCCBC
T ss_pred cccccCCcc
Confidence 799998875
No 5
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=30.33 E-value=0.93 Score=30.76 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=32.9
Q ss_pred ccCcchhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhHHhhcccccccc
Q 030308 42 ITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101 (179)
Q Consensus 42 ~~gvCqRC~eiIeWK~kY~KYKpLt~p~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~ 101 (179)
|+..|+.|...|+|+ ....-|..|.+.-.+.| .|+.|..++.+=--||
T Consensus 1 m~~~CP~C~~eL~~~---------~~~~~C~~C~~~~~~~a---~CPdC~~~Le~LkACG 48 (71)
T d2jnea1 1 MELHCPQCQHVLDQD---------NGHARCRSCGEFIEMKA---LCPDCHQPLQVLKACG 48 (71)
T ss_dssp CCCBCSSSCSBEEEE---------TTEEEETTTCCEEEEEE---ECTTTCSBCEEEEETT
T ss_pred CCCcCCCccCccccc---------CCCEehhhhhhhheeEE---eCCccccHHHHHHhcc
Confidence 345799999999997 24567888876555544 5777777766554454
No 6
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=29.47 E-value=6.4 Score=22.53 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=9.2
Q ss_pred ccccccCccce
Q 030308 96 VCAKCCSRVDR 106 (179)
Q Consensus 96 vCaKC~k~~~~ 106 (179)
.||+||++.+.
T Consensus 2 rca~cgk~les 12 (31)
T d1ibia2 2 RCAKCGKSLES 12 (31)
T ss_dssp ECSSSCCEECS
T ss_pred ccccccCcccc
Confidence 49999998875
No 7
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.04 E-value=2.8 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=10.0
Q ss_pred cCcchhhHHHHH
Q 030308 43 TGVCPRCKDQID 54 (179)
Q Consensus 43 ~gvCqRC~eiIe 54 (179)
-.||+.|+.+|+
T Consensus 8 k~vC~KCh~iId 19 (35)
T d2cora2 8 KYICQKCHAIID 19 (35)
T ss_dssp CCBCTTTCCBCC
T ss_pred hHHHHHHHhhhh
Confidence 358999999994
No 8
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=27.06 E-value=8.3 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.625 Sum_probs=18.9
Q ss_pred ccccccccchhhHHHHhcChhHHhhccccccccCccceecCC
Q 030308 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGR 110 (179)
Q Consensus 69 ~KC~kC~qktV~~AYh~iC~~CA~~~~vCaKC~k~~~~i~~~ 110 (179)
.+|.+|+..|. ..+|+.||.......|.
T Consensus 3 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~Pa 30 (52)
T d2ey4e1 3 RKCPKCGRYTL--------------KEVCPVCGEKTKVAHPP 30 (52)
T ss_dssp EECTTTCCEES--------------SSBCTTTCCBCEESSCC
T ss_pred ccCCcccceec--------------cccCcCCCCcccccCCC
Confidence 46777776543 35788999877765553
No 9
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=26.89 E-value=21 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhchhhchhhHHHhh
Q 030308 116 EAEQKMLEAALKNARERDRRILLRAV 141 (179)
Q Consensus 116 e~eq~ele~~lk~l~ER~RRt~lR~~ 141 (179)
++....+.++|..|+++.|..|.-..
T Consensus 6 ~e~~~~l~~~l~~Lp~~~r~v~~l~~ 31 (68)
T d1or7a1 6 EELRQIVFRTIESLPEDLRMAITLRE 31 (68)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556789999999999999886443
No 10
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus [TaxId: 873]}
Probab=26.75 E-value=13 Score=25.06 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHhCCCCCCCCccccccccc-------chhhHHHHhcChhHHhhc
Q 030308 46 CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------RAVRQAYHNLCPGCAKEQ 94 (179)
Q Consensus 46 CqRC~eiIeWK~kY~KYKpLt~p~KC~kC~q-------ktV~~AYh~iC~~CA~~~ 94 (179)
|.-|+-.++ -...-|.-.+.+..|..|+. .+...|||..|..|=.+.
T Consensus 36 C~~CHh~~~--~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~A~H~~C~~CH~~~ 89 (103)
T d3caoa_ 36 CNACHHVWV--NGVLAEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQ 89 (103)
T ss_dssp GGGTSCCEE--TTEECSSCCCTTSCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCc--CccccccccCCCCccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 999998553 22233444445556999984 346789999999997664
No 11
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.71 E-value=61 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=15.0
Q ss_pred HHhcChhHHhh--ccccccccCccc
Q 030308 83 YHNLCPGCAKE--QNVCAKCCSRVD 105 (179)
Q Consensus 83 Yh~iC~~CA~~--~~vCaKC~k~~~ 105 (179)
-|+.|..|... ..-|+-|+.+..
T Consensus 42 gH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (97)
T d1jm7b_ 42 EHIFCSNCVSDCIGTGCPVCYTPAW 66 (97)
T ss_dssp SCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCchhHHHHHHHHhccccccCCcCc
Confidence 46777777554 234999986543
No 12
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.61 E-value=9.3 Score=22.54 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.9
Q ss_pred cccccccCcc
Q 030308 95 NVCAKCCSRV 104 (179)
Q Consensus 95 ~vCaKC~k~~ 104 (179)
-||+||||.-
T Consensus 5 fvcskcgktf 14 (37)
T d1x6ha1 5 FVCSKCGKTF 14 (37)
T ss_dssp EECSSSCCEE
T ss_pred eeecccccch
Confidence 4899999854
No 13
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=13 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.550 Sum_probs=9.4
Q ss_pred cccccccCccce
Q 030308 95 NVCAKCCSRVDR 106 (179)
Q Consensus 95 ~vCaKC~k~~~~ 106 (179)
..|++|+++++-
T Consensus 3 ~~CprC~K~VYf 14 (30)
T d2cu8a1 3 SKCPKCDKTVYF 14 (30)
T ss_dssp CBCTTTCCBCCT
T ss_pred CcCCCCCCceee
Confidence 469999998763
No 14
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=20.50 E-value=9.2 Score=24.55 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.4
Q ss_pred hhccccccccCccc
Q 030308 92 KEQNVCAKCCSRVD 105 (179)
Q Consensus 92 ~~~~vCaKC~k~~~ 105 (179)
.....||.||-++.
T Consensus 29 ~qK~~CasCGyg~s 42 (56)
T d1vqo11 29 TKKKVCSSCGFGKS 42 (56)
T ss_dssp TTTTEETTTCTTTC
T ss_pred hccccccccCCCcc
Confidence 35789999997443
No 15
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=20.44 E-value=6.4 Score=25.49 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.3
Q ss_pred CCCCcccccccccchhhHHH
Q 030308 64 PLSEPAKCQRCTKRAVRQAY 83 (179)
Q Consensus 64 pLt~p~KC~kC~qktV~~AY 83 (179)
|+..+++|+.|++.+...+|
T Consensus 47 p~~~~~~Ci~cgk~a~~~v~ 66 (71)
T d1nj1a2 47 QEEGSGTCINCGREAPYRAY 66 (71)
T ss_dssp EECSCCBCTTTCSBCCEEEE
T ss_pred cCCCCCcceecCCccceEEE
Confidence 56678888888887765443
Done!