Query 030310
Match_columns 179
No_of_seqs 132 out of 157
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 19:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.1E-29 3.8E-34 206.0 3.3 92 86-177 1-92 (177)
2 2lnj_A SLL1418 protein, putati 99.6 4.3E-20 1.5E-24 147.0 0.0 77 88-172 11-92 (170)
3 2xb3_A PSBP protein; photosynt 99.7 2.6E-18 8.9E-23 134.9 6.8 74 92-172 6-83 (165)
4 1tu1_A Hypothetical protein PA 40.5 24 0.00083 26.4 3.5 16 95-110 4-19 (148)
5 3hlz_A Uncharacterized protein 34.6 43 0.0015 28.9 4.4 46 92-141 5-50 (269)
6 3u7d_B Protein HEG homolog 1; 33.0 14 0.00048 21.4 0.8 11 103-113 4-14 (26)
7 4fs3_A Enoyl-[acyl-carrier-pro 32.7 24 0.00083 28.0 2.5 27 147-173 217-245 (256)
8 3ged_A Short-chain dehydrogena 30.1 22 0.00074 29.1 1.8 28 146-173 195-222 (247)
9 3s8m_A Enoyl-ACP reductase; ro 26.7 18 0.00062 32.5 0.8 31 147-177 316-351 (422)
10 4h15_A Short chain alcohol deh 24.9 36 0.0012 27.7 2.2 28 146-173 221-250 (261)
11 3ucx_A Short chain dehydrogena 24.9 45 0.0015 26.1 2.8 30 144-173 223-254 (264)
12 3t4x_A Oxidoreductase, short c 24.5 35 0.0012 26.8 2.1 28 146-173 226-255 (267)
13 3kzv_A Uncharacterized oxidore 24.4 32 0.0011 26.9 1.8 27 147-173 212-241 (254)
14 4da9_A Short-chain dehydrogena 22.6 37 0.0013 27.1 1.9 28 146-173 239-268 (280)
15 4gkb_A 3-oxoacyl-[acyl-carrier 21.8 40 0.0014 27.5 1.9 26 148-173 216-243 (258)
16 3lf2_A Short chain oxidoreduct 21.7 52 0.0018 25.8 2.5 29 145-173 224-254 (265)
17 3is3_A 17BETA-hydroxysteroid d 21.6 38 0.0013 26.7 1.7 28 146-173 233-262 (270)
18 4fc7_A Peroxisomal 2,4-dienoyl 21.3 47 0.0016 26.3 2.2 28 146-173 234-263 (277)
19 4e4y_A Short chain dehydrogena 20.6 62 0.0021 24.9 2.7 29 145-173 204-234 (244)
20 3tpc_A Short chain alcohol deh 20.6 59 0.002 25.2 2.6 26 148-173 220-245 (257)
21 4dqx_A Probable oxidoreductase 20.2 62 0.0021 25.8 2.7 29 145-173 232-262 (277)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.95 E-value=1.1e-29 Score=205.96 Aligned_cols=92 Identities=80% Similarity=1.284 Sum_probs=72.0
Q ss_pred CCCCCCCCcccccCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCChHHHHHHHHHHHH
Q 030310 86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLG 165 (179)
Q Consensus 86 g~p~~~~~F~~y~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~kksI~DlGsPee~~~~Vgy~L~ 165 (179)
|+||..++|++|.+|||+|+||++|+++++++++|+|++|+|+++.++||+|+|+|+++++|+|||+|||||++|+|+|+
T Consensus 1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~ 80 (177)
T 1v2b_A 1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG 80 (177)
T ss_dssp ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCcccc
Q 030310 166 KQAYSGKTSSEV 177 (179)
Q Consensus 166 kq~~~g~t~seg 177 (179)
+|+++++|.+||
T Consensus 81 ~~~~~~~~~~~~ 92 (177)
T 1v2b_A 81 RQAYSGKTDSEG 92 (177)
T ss_dssp ------------
T ss_pred HHhhcccccccC
Confidence 999999988875
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.62 E-value=4.3e-20 Score=146.96 Aligned_cols=77 Identities=23% Similarity=0.447 Sum_probs=67.5
Q ss_pred CCCCCCcccccCCCeeEecCCCCCCCceeeeC----CceEEeeeCCCCCCceEEEEecCCC-CCcccCCChHHHHHHHHH
Q 030310 88 PKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP----GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDY 162 (179)
Q Consensus 88 p~~~~~F~~y~~DGYsFlyPs~Wnpskev~~~----G~dv~f~D~~~~~eNvsV~ispt~k-ksI~DlGsPee~~~~Vgy 162 (179)
|++++.|.| ..|||+|+||++| ++++++ |+|++|+|+++..+||+|+|+|+.+ ++|+|||+||| |+|
T Consensus 11 ~~g~~~y~d-~~~gy~f~~P~gW---~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~----va~ 82 (170)
T 2lnj_A 11 IASLQRYSD-TKDGYEFLYPNGW---IGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD----VGY 82 (170)
Confidence 444444444 3999999999999 778888 9999999999999999999999977 99999999999 899
Q ss_pred HHHhhhhccc
Q 030310 163 LLGKQAYSGK 172 (179)
Q Consensus 163 ~L~kq~~~g~ 172 (179)
+|++++++++
T Consensus 83 ~l~~~~~~~~ 92 (170)
T 2lnj_A 83 RFMKTVNDAS 92 (170)
Confidence 9999988764
No 3
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.73 E-value=2.6e-18 Score=134.89 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=66.3
Q ss_pred CCccccc--CCCeeEecCCCCCCCceeeeC-CceEEeeeCCCCCCceEEEEecCCC-CCcccCCChHHHHHHHHHHHHhh
Q 030310 92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDYLLGKQ 167 (179)
Q Consensus 92 ~~F~~y~--~DGYsFlyPs~Wnpskev~~~-G~dv~f~D~~~~~eNvsV~ispt~k-ksI~DlGsPee~~~~Vgy~L~kq 167 (179)
.+|..|. .|||+|+||++| ++++++ |+|++|+|+++..+||+|+|+|+.+ ++|+|||+||| |+++|+++
T Consensus 6 ~g~~~~~D~~~gysf~~P~~W---~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~----va~~l~~~ 78 (165)
T 2xb3_A 6 SGLQAYVDSYDGYEFLYPRGW---VQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEE----VGDRLLRN 78 (165)
T ss_dssp CCEEEEEETTTTEEEEEETTE---EEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHH----HHHHHHHH
T ss_pred CCceEEEcCCCCEEEEcCCCC---eEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHH----HHHHHHHH
Confidence 3455555 999999999999 999998 9999999999999999999999976 99999999999 89999999
Q ss_pred hhccc
Q 030310 168 AYSGK 172 (179)
Q Consensus 168 ~~~g~ 172 (179)
+++++
T Consensus 79 ~~~~~ 83 (165)
T 2xb3_A 79 IIAPS 83 (165)
T ss_dssp TTSCT
T ss_pred hhcCC
Confidence 88653
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=40.48 E-value=24 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=14.2
Q ss_pred ccccCCCeeEecCCCC
Q 030310 95 LPYNGDGFKLSIPSKW 110 (179)
Q Consensus 95 ~~y~~DGYsFlyPs~W 110 (179)
..|...+++|.+|.+|
T Consensus 4 ~~y~~~Egsl~lP~gw 19 (148)
T 1tu1_A 4 TLYRLHEADLEIPDAW 19 (148)
T ss_dssp EEEECSSEEEEEETTS
T ss_pred ceEEECCEEEeCCCCc
Confidence 4578899999999999
No 5
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.64 E-value=43 Score=28.89 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCcccccCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEec
Q 030310 92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP 141 (179)
Q Consensus 92 ~~F~~y~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~isp 141 (179)
+-|++ .+-=|++.||++| -|++=.----.|-++-.=+-|.++.--.
T Consensus 5 kk~IS-PgaWfs~~yP~~W---~EfEd~E~sflFynp~~WtGNfRISayk 50 (269)
T 3hlz_A 5 KKFIS-PGAWFSMNYPSDW---NEFEDGEGSFLFYNPDVWTGNFRISAFK 50 (269)
T ss_dssp EEEEC-GGGCEEEEECTTC---EEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred ceeec-CCceeEEecCCCc---ccccCCCCceeeeChhhcccceEEEecc
Confidence 34777 7888999999999 6754332334456677778888766554
No 6
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=33.04 E-value=14 Score=21.43 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=9.4
Q ss_pred eEecCCCCCCC
Q 030310 103 KLSIPSKWNPS 113 (179)
Q Consensus 103 sFlyPs~Wnps 113 (179)
+-+||..||||
T Consensus 4 sciypgqynps 14 (26)
T 3u7d_B 4 SCIFPGQYNPS 14 (26)
T ss_pred cccccCccCcc
Confidence 45799999998
No 7
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=32.68 E-value=24 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.3
Q ss_pred cccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 147 ITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 147 I~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
+.-+|.|||+++-|.||+.... +.|++
T Consensus 217 l~R~g~peevA~~v~fL~Sd~a~~iTG~~ 245 (256)
T 4fs3_A 217 LKRNVDQVEVGKTAAYLLSDLSSGVTGEN 245 (256)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCccCCE
Confidence 4568999999999999997653 45654
No 8
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=30.06 E-value=22 Score=29.12 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=22.8
Q ss_pred CcccCCChHHHHHHHHHHHHhhhhcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQAYSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~~~g~t 173 (179)
-+..+|.|||+++-|-||+....+.|++
T Consensus 195 Pl~R~g~pediA~~v~fL~s~~~iTG~~ 222 (247)
T 3ged_A 195 PAGKVGTPKDISNMVLFLCQQDFITGET 222 (247)
T ss_dssp TTSSCBCHHHHHHHHHHHHHCSSCCSCE
T ss_pred CCCCCcCHHHHHHHHHHHHhCCCCCCCe
Confidence 4667999999999999999766566654
No 9
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Probab=26.74 E-value=18 Score=32.52 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.4
Q ss_pred cccCCChHHHHHHHHHHHHhhhhc--cc---Ccccc
Q 030310 147 ITDYGSPEEFLSKVDYLLGKQAYS--GK---TSSEV 177 (179)
Q Consensus 147 I~DlGsPee~~~~Vgy~L~kq~~~--g~---t~seg 177 (179)
+..+|.|||+++.+-+|+....|. |+ ++.||
T Consensus 316 m~r~G~pEdva~~v~~L~sd~ly~~~~~~~~~d~~~ 351 (422)
T 3s8m_A 316 MKEKGLHEGTIEQLDRLFRERLYRQDGQPAEVDEQN 351 (422)
T ss_dssp HHHTTCCCCHHHHHHHHHHHTTTCTTCCCCCCCTTS
T ss_pred hcCCcChHHHHHHHHHHhcchhhccCCCCcccCCCC
Confidence 568999999999999999999995 55 44554
No 10
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=24.94 E-value=36 Score=27.74 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=21.7
Q ss_pred CcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
-+.-+|.|||+++-|.||+.... +.|++
T Consensus 221 PlgR~g~peevA~~v~fLaS~~a~~itG~~ 250 (261)
T 4h15_A 221 PLGRPAKPEEVANLIAFLASDRAASITGAE 250 (261)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCccCcE
Confidence 35679999999999999997654 45554
No 11
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.89 E-value=45 Score=26.15 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCCcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 144 KKSITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 144 kksI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
...+..+|+|||+++.|-|++.... ..|++
T Consensus 223 ~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~ 254 (264)
T 3ucx_A 223 GSDLKRLPTEDEVASAILFMASDLASGITGQA 254 (264)
T ss_dssp TSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred cCCcccCCCHHHHHHHHHHHcCccccCCCCCE
Confidence 3456789999999999999997643 45554
No 12
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=24.49 E-value=35 Score=26.82 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=21.9
Q ss_pred CcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
-+..+|+|||+++.|.|++.... ..|++
T Consensus 226 ~~~r~~~pedvA~~v~fL~s~~~~~itG~~ 255 (267)
T 3t4x_A 226 IIQRLIRPEEIAHLVTFLSSPLSSAINGSA 255 (267)
T ss_dssp SSCSCBCTHHHHHHHHHHHSGGGTTCCSCE
T ss_pred cccCccCHHHHHHHHHHHcCccccCccCCe
Confidence 35789999999999999997543 45654
No 13
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=24.41 E-value=32 Score=26.90 Aligned_cols=27 Identities=7% Similarity=-0.146 Sum_probs=18.9
Q ss_pred cccCCChHHHHHHHHHHHHhhh---hcccC
Q 030310 147 ITDYGSPEEFLSKVDYLLGKQA---YSGKT 173 (179)
Q Consensus 147 I~DlGsPee~~~~Vgy~L~kq~---~~g~t 173 (179)
+..+|+|||+++.+.|++.... ..|++
T Consensus 212 ~~r~~~p~dva~~v~~L~s~~~~~~itG~~ 241 (254)
T 3kzv_A 212 NNQLLDSSVPATVYAKLALHGIPDGVNGQY 241 (254)
T ss_dssp TC----CHHHHHHHHHHHHHCCCGGGTTCE
T ss_pred cCCcCCcccHHHHHHHHHhhcccCCCCccE
Confidence 5678999999999999998764 67765
No 14
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=22.62 E-value=37 Score=27.11 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred CcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
-+..+|+|||+++.|.|++.... ..|++
T Consensus 239 p~~r~~~pedvA~~v~~L~s~~~~~itG~~ 268 (280)
T 4da9_A 239 PMRRWGEPEDIGNIVAGLAGGQFGFATGSV 268 (280)
T ss_dssp ---CCBCHHHHHHHHHHHHTSTTGGGTTCE
T ss_pred CcCCcCCHHHHHHHHHHHhCccccCCCCCE
Confidence 45679999999999999997654 56664
No 15
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=21.84 E-value=40 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=20.8
Q ss_pred ccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 148 TDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 148 ~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
.-+|.|||+++-|-||+.... +.|++
T Consensus 216 ~R~g~peeiA~~v~fLaS~~a~~iTG~~ 243 (258)
T 4gkb_A 216 RRFTTPDEIADTAVFLLSPRASHTTGEW 243 (258)
T ss_dssp TSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CCCcCHHHHHHHHHHHhCchhcCccCCe
Confidence 479999999999999997654 45554
No 16
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=21.70 E-value=52 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 145 KSITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 145 ksI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
..+..+|+|||+++.|-|++.... ..|++
T Consensus 224 ~p~~r~~~pedvA~~v~fL~s~~~~~itG~~ 254 (265)
T 3lf2_A 224 IPLGRLGKPIEAARAILFLASPLSAYTTGSH 254 (265)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGTTCCSEE
T ss_pred CCcCCCcCHHHHHHHHHHHhCchhcCcCCCE
Confidence 456789999999999999997543 45554
No 17
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=21.55 E-value=38 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=21.9
Q ss_pred CcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
.+..+|.|||+++.|.|++.... +.|++
T Consensus 233 p~~r~~~p~dvA~~v~~L~s~~~~~itG~~ 262 (270)
T 3is3_A 233 PLHRNGWPQDVANVVGFLVSKEGEWVNGKV 262 (270)
T ss_dssp TTCSCBCHHHHHHHHHHHTSGGGTTCCSCE
T ss_pred CCCCCCCHHHHHHHHHHHcCCccCCccCcE
Confidence 46679999999999999997653 45654
No 18
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=21.32 E-value=47 Score=26.32 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.1
Q ss_pred CcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 146 SITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 146 sI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
-+..+|+|||+++.|.|++.... ..|++
T Consensus 234 p~~r~~~p~dvA~~v~fL~s~~~~~itG~~ 263 (277)
T 4fc7_A 234 PLQRLGNKTEIAHSVLYLASPLASYVTGAV 263 (277)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CCCCCcCHHHHHHHHHHHcCCccCCcCCCE
Confidence 45679999999999999997643 55654
No 19
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}
Probab=20.64 E-value=62 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 145 KSITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 145 ksI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
..+..+|+|||+++.+-|++.... ..|++
T Consensus 204 ~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~ 234 (244)
T 4e4y_A 204 FPLNRIAQPQEIAELVIFLLSDKSKFMTGGL 234 (244)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CCCCCCcCHHHHHHHHHHHhcCccccccCCe
Confidence 345679999999999999997543 45654
No 20
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=20.63 E-value=59 Score=25.19 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhhcccC
Q 030310 148 TDYGSPEEFLSKVDYLLGKQAYSGKT 173 (179)
Q Consensus 148 ~DlGsPee~~~~Vgy~L~kq~~~g~t 173 (179)
..+|+|||+++-+-|++......|++
T Consensus 220 ~r~~~~~dva~~v~~l~s~~~itG~~ 245 (257)
T 3tpc_A 220 PRLGRAEEYAALVKHICENTMLNGEV 245 (257)
T ss_dssp CSCBCHHHHHHHHHHHHHCTTCCSCE
T ss_pred CCCCCHHHHHHHHHHHcccCCcCCcE
Confidence 67999999999999999765666664
No 21
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=20.17 E-value=62 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCcccCCChHHHHHHHHHHHHhhh--hcccC
Q 030310 145 KSITDYGSPEEFLSKVDYLLGKQA--YSGKT 173 (179)
Q Consensus 145 ksI~DlGsPee~~~~Vgy~L~kq~--~~g~t 173 (179)
.-+..+|+|||+++.+-|++.... ..|++
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~~~~~itG~~ 262 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASDRSRFATGSI 262 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred CcccCCcCHHHHHHHHHHHhCCccCCCcCCE
Confidence 446779999999999999997654 45654
Done!