Query 030311
Match_columns 179
No_of_seqs 239 out of 1146
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 11:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03143 nudix hydrolase; Prov 100.0 7.4E-42 1.6E-46 299.0 17.7 141 33-175 19-190 (291)
2 KOG3041 Nucleoside diphosphate 99.7 1.1E-16 2.4E-21 135.9 9.1 110 45-175 5-134 (225)
3 PRK15009 GDP-mannose pyrophosp 99.4 2.3E-13 5.1E-18 112.2 8.0 41 134-176 64-110 (191)
4 PRK10729 nudF ADP-ribose pyrop 99.4 5.9E-13 1.3E-17 110.6 9.5 42 134-176 68-114 (202)
5 PRK11762 nudE adenosine nucleo 99.3 1.4E-11 3.1E-16 99.5 8.4 42 134-176 65-106 (185)
6 TIGR00052 nudix-type nucleosid 99.2 9.4E-12 2E-16 101.9 4.8 42 134-176 63-109 (185)
7 cd04669 Nudix_Hydrolase_11 Mem 98.9 5E-09 1.1E-13 78.5 5.8 36 141-177 23-58 (121)
8 cd04700 DR1025_like DR1025 fro 98.8 1.1E-08 2.4E-13 79.1 7.0 40 137-177 33-72 (142)
9 PRK09438 nudB dihydroneopterin 98.8 4.9E-09 1.1E-13 80.5 3.1 31 144-175 32-62 (148)
10 cd03424 ADPRase_NUDT5 ADP-ribo 98.8 9.5E-09 2.1E-13 77.2 4.6 40 136-176 22-61 (137)
11 PRK10707 putative NUDIX hydrol 98.7 9.8E-09 2.1E-13 84.7 3.6 40 135-176 54-93 (190)
12 cd03672 Dcp2p mRNA decapping e 98.7 1E-08 2.2E-13 80.4 3.3 32 144-176 26-57 (145)
13 PRK15472 nucleoside triphospha 98.7 1.6E-08 3.4E-13 77.1 3.6 32 144-176 32-63 (141)
14 cd04684 Nudix_Hydrolase_25 Con 98.7 2.1E-08 4.7E-13 73.3 3.8 35 142-177 24-58 (128)
15 cd03674 Nudix_Hydrolase_1 Memb 98.7 5.9E-08 1.3E-12 74.2 6.4 31 145-176 28-58 (138)
16 cd04683 Nudix_Hydrolase_24 Mem 98.7 2E-08 4.3E-13 73.7 3.5 34 142-176 25-58 (120)
17 cd04680 Nudix_Hydrolase_21 Mem 98.7 1.9E-08 4.1E-13 73.3 3.2 32 144-176 24-55 (120)
18 cd04670 Nudix_Hydrolase_12 Mem 98.6 6.4E-08 1.4E-12 72.0 5.7 34 143-177 27-60 (127)
19 cd03673 Ap6A_hydrolase Diadeno 98.6 2.2E-08 4.7E-13 73.6 3.0 33 144-177 28-60 (131)
20 cd04691 Nudix_Hydrolase_32 Mem 98.6 2.4E-08 5.2E-13 74.4 3.3 32 143-175 27-58 (117)
21 cd03675 Nudix_Hydrolase_2 Cont 98.6 3.3E-08 7.2E-13 74.0 3.9 35 141-176 22-56 (134)
22 cd04673 Nudix_Hydrolase_15 Mem 98.6 3.6E-08 7.9E-13 71.8 3.7 33 143-176 25-57 (122)
23 cd04687 Nudix_Hydrolase_28 Mem 98.6 8.6E-08 1.9E-12 71.6 5.6 34 143-177 25-58 (128)
24 cd04682 Nudix_Hydrolase_23 Mem 98.6 3.8E-08 8.2E-13 73.2 3.3 32 144-176 30-61 (122)
25 PF00293 NUDIX: NUDIX domain; 98.6 3.3E-08 7.1E-13 72.1 2.9 33 143-176 30-62 (134)
26 TIGR02705 nudix_YtkD nucleosid 98.6 3.8E-08 8.1E-13 79.9 3.5 32 144-176 46-77 (156)
27 cd04692 Nudix_Hydrolase_33 Mem 98.6 8.5E-08 1.8E-12 73.7 5.3 32 144-176 34-66 (144)
28 cd04663 Nudix_Hydrolase_6 Memb 98.6 1.3E-07 2.8E-12 74.3 6.3 37 136-175 19-55 (126)
29 cd04696 Nudix_Hydrolase_37 Mem 98.6 3.6E-08 7.9E-13 73.4 3.0 32 144-176 27-58 (125)
30 cd04679 Nudix_Hydrolase_20 Mem 98.6 4E-08 8.6E-13 73.0 3.2 34 143-177 28-61 (125)
31 cd04511 Nudix_Hydrolase_4 Memb 98.6 5.8E-08 1.3E-12 73.2 3.9 34 143-177 38-71 (130)
32 cd04689 Nudix_Hydrolase_30 Mem 98.6 5.7E-08 1.2E-12 72.1 3.6 32 144-176 24-55 (125)
33 cd03427 MTH1 MutT homolog-1 (M 98.6 5.8E-08 1.2E-12 72.8 3.5 34 143-177 26-59 (137)
34 cd04671 Nudix_Hydrolase_13 Mem 98.6 6.1E-08 1.3E-12 73.6 3.7 34 143-177 26-59 (123)
35 cd04676 Nudix_Hydrolase_17 Mem 98.5 6.3E-08 1.4E-12 70.4 3.5 33 144-177 26-58 (129)
36 COG0494 MutT NTP pyrophosphohy 98.5 6E-08 1.3E-12 68.6 3.3 33 143-176 36-69 (161)
37 cd03428 Ap4A_hydrolase_human_l 98.5 3.8E-08 8.2E-13 73.0 2.3 32 144-176 28-59 (130)
38 cd04662 Nudix_Hydrolase_5 Memb 98.5 6.4E-08 1.4E-12 76.3 3.6 32 144-176 34-65 (126)
39 cd04661 MRP_L46 Mitochondrial 98.5 6.7E-08 1.4E-12 73.9 3.6 33 144-177 27-59 (132)
40 cd04686 Nudix_Hydrolase_27 Mem 98.5 6.2E-08 1.3E-12 73.7 3.3 31 144-175 23-53 (131)
41 cd04688 Nudix_Hydrolase_29 Mem 98.5 7.5E-08 1.6E-12 71.6 3.6 34 143-177 23-56 (126)
42 cd04677 Nudix_Hydrolase_18 Mem 98.5 7.4E-08 1.6E-12 71.4 3.5 33 144-177 31-63 (132)
43 cd04690 Nudix_Hydrolase_31 Mem 98.5 7.8E-08 1.7E-12 70.2 3.3 32 144-176 24-55 (118)
44 cd04666 Nudix_Hydrolase_9 Memb 98.5 8E-08 1.7E-12 73.1 3.4 33 144-177 27-59 (122)
45 PRK15434 GDP-mannose mannosyl 98.5 7.2E-08 1.6E-12 77.7 3.2 32 144-176 44-75 (159)
46 cd03426 CoAse Coenzyme A pyrop 98.5 8.4E-08 1.8E-12 75.4 3.2 32 144-176 33-65 (157)
47 cd03671 Ap4A_hydrolase_plant_l 98.5 9.1E-08 2E-12 73.9 3.1 33 143-176 27-59 (147)
48 cd04672 Nudix_Hydrolase_14 Mem 98.5 1.3E-07 2.9E-12 70.3 3.7 33 144-177 25-57 (123)
49 cd03430 GDPMH GDP-mannose glyc 98.5 1.1E-07 2.4E-12 73.9 3.3 33 144-177 39-71 (144)
50 cd04681 Nudix_Hydrolase_22 Mem 98.5 1.2E-07 2.5E-12 70.6 3.0 32 144-176 28-59 (130)
51 cd04667 Nudix_Hydrolase_10 Mem 98.5 1.3E-07 2.7E-12 69.4 3.2 31 144-175 22-52 (112)
52 cd03429 NADH_pyrophosphatase N 98.5 9.9E-08 2.1E-12 72.7 2.7 37 137-176 21-57 (131)
53 PLN02325 nudix hydrolase 98.5 3.8E-07 8.3E-12 71.2 6.0 34 143-177 34-67 (144)
54 cd04699 Nudix_Hydrolase_39 Mem 98.5 1.2E-07 2.7E-12 69.4 3.0 34 143-177 29-62 (129)
55 cd04695 Nudix_Hydrolase_36 Mem 98.5 1.3E-07 2.8E-12 71.4 3.2 31 145-176 29-59 (131)
56 PRK15393 NUDIX hydrolase YfcD; 98.4 5.6E-07 1.2E-11 72.9 7.0 39 136-175 55-97 (180)
57 PRK10546 pyrimidine (deoxy)nuc 98.4 6.1E-07 1.3E-11 67.1 6.3 33 144-177 31-63 (135)
58 cd04665 Nudix_Hydrolase_8 Memb 98.4 1.8E-07 3.9E-12 71.8 3.3 31 144-175 22-52 (118)
59 cd04693 Nudix_Hydrolase_34 Mem 98.4 1.6E-07 3.4E-12 70.1 2.5 31 144-176 29-60 (127)
60 cd04664 Nudix_Hydrolase_7 Memb 98.4 1.9E-07 4.1E-12 69.7 2.8 32 143-175 28-59 (129)
61 cd04697 Nudix_Hydrolase_38 Mem 98.4 4.1E-07 9E-12 68.4 4.5 32 144-176 29-61 (126)
62 TIGR00586 mutt mutator mutT pr 98.4 1.5E-06 3.1E-11 64.0 7.1 33 143-176 31-63 (128)
63 COG1051 ADP-ribose pyrophospha 98.3 3.1E-07 6.7E-12 72.5 3.2 32 144-176 36-67 (145)
64 cd04678 Nudix_Hydrolase_19 Mem 98.3 3.9E-07 8.5E-12 67.8 3.4 34 143-177 28-61 (129)
65 cd02883 Nudix_Hydrolase Nudix 98.3 5.8E-07 1.3E-11 63.4 3.4 33 143-176 25-57 (123)
66 PRK00241 nudC NADH pyrophospha 98.3 4.2E-07 9.1E-12 78.3 2.8 38 136-176 151-188 (256)
67 PRK00714 RNA pyrophosphohydrol 98.3 1.7E-06 3.6E-11 68.4 6.0 33 143-176 32-64 (156)
68 PRK10776 nucleoside triphospha 98.3 2.8E-06 6.1E-11 62.0 6.7 32 144-176 32-63 (129)
69 cd04674 Nudix_Hydrolase_16 Mem 98.2 9.5E-07 2E-11 68.3 3.5 34 143-177 29-62 (118)
70 cd03425 MutT_pyrophosphohydrol 98.2 2E-06 4.3E-11 61.7 3.8 33 143-176 28-60 (124)
71 cd03676 Nudix_hydrolase_3 Memb 98.2 1.2E-06 2.5E-11 70.1 2.6 32 144-176 65-97 (180)
72 cd02885 IPP_Isomerase Isopente 98.2 1.2E-06 2.7E-11 69.2 2.8 32 144-176 59-91 (165)
73 cd04685 Nudix_Hydrolase_26 Mem 98.1 5.5E-06 1.2E-10 64.1 5.9 32 143-175 28-59 (133)
74 PRK05379 bifunctional nicotina 98.1 2.2E-06 4.8E-11 76.1 3.5 34 142-176 227-260 (340)
75 PRK03759 isopentenyl-diphospha 98.1 2.5E-06 5.4E-11 69.0 2.8 31 145-176 64-95 (184)
76 cd04694 Nudix_Hydrolase_35 Mem 98.0 4.6E-06 9.9E-11 65.7 3.4 32 144-176 30-61 (143)
77 KOG3084 NADH pyrophosphatase I 97.9 8.6E-06 1.9E-10 73.7 2.7 41 133-176 205-245 (345)
78 PRK08999 hypothetical protein; 97.7 9.8E-05 2.1E-09 63.4 7.0 32 144-176 33-64 (312)
79 PLN02709 nudix hydrolase 97.7 3.1E-05 6.8E-10 66.4 2.9 33 144-176 68-100 (222)
80 cd03670 ADPRase_NUDT9 ADP-ribo 97.6 2.8E-05 6E-10 64.9 2.5 30 144-174 61-90 (186)
81 TIGR02150 IPP_isom_1 isopenten 97.5 6.8E-05 1.5E-09 59.3 2.4 30 144-176 56-86 (158)
82 COG2816 NPY1 NTP pyrophosphohy 96.5 0.0021 4.7E-08 57.2 3.2 38 136-176 163-200 (279)
83 COG4119 Predicted NTP pyrophos 96.4 0.0022 4.8E-08 52.5 2.6 32 144-176 37-68 (161)
84 KOG3069 Peroxisomal NUDIX hydr 96.1 0.0042 9.1E-08 54.5 2.9 31 145-175 76-106 (246)
85 KOG4432 Uncharacterized NUDIX 96.0 0.0051 1.1E-07 56.3 3.1 34 143-177 79-112 (405)
86 KOG2839 Diadenosine and diphos 95.9 0.0069 1.5E-07 49.6 3.2 32 145-177 38-69 (145)
87 PLN02791 Nudix hydrolase homol 95.9 0.0052 1.1E-07 61.1 2.5 32 144-176 62-94 (770)
88 PLN02552 isopentenyl-diphospha 93.8 0.044 9.5E-07 47.7 2.5 17 159-175 117-133 (247)
89 KOG4432 Uncharacterized NUDIX 93.3 0.079 1.7E-06 48.7 3.4 33 143-176 284-316 (405)
90 PLN02839 nudix hydrolase 92.7 0.069 1.5E-06 49.4 2.1 30 146-176 238-267 (372)
91 KOG4195 Transient receptor pot 92.1 0.1 2.2E-06 46.2 2.2 27 144-171 151-177 (275)
92 KOG0648 Predicted NUDIX hydrol 91.6 0.088 1.9E-06 47.4 1.4 37 137-174 137-173 (295)
93 cd03431 DNA_Glycosylase_C DNA 86.1 0.89 1.9E-05 32.3 3.1 36 136-172 20-57 (118)
94 KOG2937 Decapping enzyme compl 77.8 0.61 1.3E-05 43.0 -0.4 32 144-176 107-138 (348)
95 PF13355 DUF4101: Protein of u 74.5 21 0.00045 27.5 7.3 50 64-116 16-67 (117)
96 PF12123 Amidase02_C: N-acetyl 50.7 31 0.00068 23.1 3.8 35 46-88 4-38 (45)
97 PF13014 KH_3: KH domain 42.4 21 0.00045 22.3 1.8 18 161-178 10-27 (43)
98 cd01757 PLAT_RAB6IP1 PLAT/LH2 33.6 1E+02 0.0022 24.0 4.8 49 100-149 52-101 (114)
99 cd02393 PNPase_KH Polynucleoti 32.8 36 0.00078 23.1 2.0 18 161-178 21-38 (61)
100 PRK09731 putative general secr 32.5 2.3E+02 0.005 23.9 7.1 51 58-128 125-175 (178)
101 PF03487 IL13: Interleukin-13; 30.3 41 0.00089 22.5 1.8 23 148-171 14-36 (43)
102 cd01752 PLAT_polycystin PLAT/L 29.0 1.2E+02 0.0027 22.8 4.6 52 101-153 62-114 (120)
103 PRK15184 curli production asse 28.3 2.4E+02 0.0053 25.6 6.9 33 136-171 206-238 (277)
104 TIGR02019 BchJ bacteriochlorop 26.0 36 0.00077 28.9 1.2 34 137-173 29-62 (188)
105 cd02395 SF1_like-KH Splicing f 24.9 36 0.00077 26.6 0.9 20 159-178 23-42 (120)
106 KOG0117 Heterogeneous nuclear 23.8 58 0.0012 31.7 2.2 19 160-178 44-62 (506)
107 KOG1689 mRNA cleavage factor I 22.4 1.1E+02 0.0023 26.6 3.3 32 140-172 91-122 (221)
108 PF00013 KH_1: KH domain syndr 22.1 70 0.0015 20.8 1.8 19 160-178 18-36 (60)
109 PRK01099 rpoK DNA-directed RNA 20.1 95 0.0021 21.8 2.2 14 156-169 36-49 (62)
No 1
>PLN03143 nudix hydrolase; Provisional
Probab=100.00 E-value=7.4e-42 Score=298.98 Aligned_cols=141 Identities=73% Similarity=1.063 Sum_probs=128.9
Q ss_pred eeeecCCCCCCCCceeEEEeCCCCCCCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEE
Q 030311 33 VCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVD 112 (179)
Q Consensus 33 ~~~~~~~~~~~~~~t~t~~~p~~~~~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd 112 (179)
+++||+++++ ++|+||+||++++++|+|+++||+|++|++++++|++|++|+++|++++++|++++|.||+|.||+||
T Consensus 19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~vd 96 (291)
T PLN03143 19 KEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVD 96 (291)
T ss_pred ehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccccCCCceeEEEEEEEEe
Confidence 3444444444 79999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceeeEEEEEEEEEecCCCce-------------------------------eeecCCcEEEEecccccCCCCCCHHH
Q 030311 113 MFGKRIGFLKFKADIFCKETGQK-------------------------------VRVPTGRVILELPAGMLDDDKGDFVG 161 (179)
Q Consensus 113 ~fG~~~gFlk~~adv~~~~~G~~-------------------------------~R~p~g~~~lElPAG~lD~~~e~p~~ 161 (179)
+||+|+||+|++++.++..+|++ ||+|+|.++||+||||+|+++|+|++
T Consensus 97 ~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~ 176 (291)
T PLN03143 97 MFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVG 176 (291)
T ss_pred cccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHH
Confidence 99999999999999888777743 99999999999999999963579999
Q ss_pred HHHHHHhhhhCcee
Q 030311 162 TAVREVSFILLLDF 175 (179)
Q Consensus 162 aA~REL~EETG~~i 175 (179)
||+|||+|||||.+
T Consensus 177 aA~REL~EETG~~~ 190 (291)
T PLN03143 177 TAVREVEEETGIKL 190 (291)
T ss_pred HHHHHHHHHHCCcc
Confidence 99999999999975
No 2
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.68 E-value=1.1e-16 Score=135.87 Aligned_cols=110 Identities=34% Similarity=0.400 Sum_probs=74.0
Q ss_pred CceeEEEeCCCCCCCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEEEeCceeeEEEEE
Q 030311 45 PLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124 (179)
Q Consensus 45 ~~t~t~~~p~~~~~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~ 124 (179)
++| ++++|++.+.++-++..... .++.. -.. ++ ..-.|..|++|.++ |.+|+-.-|--..
T Consensus 5 ~~~-~i~l~sq~ne~~~ss~~~kp--~~i~~---~~~-----------ie-~~~kWi~Lkkv~~q--D~~GKir~wes~~ 64 (225)
T KOG3041|consen 5 SLT-SITLPSQPNEPTMSSATGKP--SKIIE---VED-----------IE-SDGKWIRLKKVLYQ--DPTGKIRDWESVQ 64 (225)
T ss_pred cce-eeeccCCCCCceeecccCCc--hheee---eec-----------cc-CCccEEEEEEEEEE--cCCCceeeeehhe
Confidence 456 99999876666666655432 22221 111 11 22348999999987 8888622222222
Q ss_pred EE--EE-----------ecCCC-------ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 125 AD--IF-----------CKETG-------QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 125 ad--v~-----------~~~~G-------~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
+. +. -..+| +|||+|+|..++|+|||+||+ +|++++||.|||+|||||+-
T Consensus 65 Rttr~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~-ge~~~~aAiREl~EEtGy~g 134 (225)
T KOG3041|consen 65 RTTRVEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDD-GEDFEGAAIRELEEETGYKG 134 (225)
T ss_pred ecccccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccC-CCchHHHHHHHHHHHhCccc
Confidence 21 11 11133 359999999999999999998 89999999999999999973
No 3
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.45 E-value=2.3e-13 Score=112.23 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=37.2
Q ss_pred ceeeecC------CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 134 QKVRVPT------GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 134 ~~~R~p~------g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|||+|+ +.++||+|||++|+ + +|++||+|||+|||||.+.
T Consensus 64 rQyR~~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~ 110 (191)
T PRK15009 64 RQFRVATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVG 110 (191)
T ss_pred EcccccccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccc
Confidence 4699999 89999999999996 4 7999999999999999763
No 4
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.43 E-value=5.9e-13 Score=110.56 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=38.6
Q ss_pred ceeeecCCc-----EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 134 QKVRVPTGR-----VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 134 ~~~R~p~g~-----~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|||+|++. ++||+|||++|+ +|+|++||+|||.|||||++.
T Consensus 68 rQyR~~~~~~~~~~~~lE~PAG~vd~-gE~p~~aA~REL~EETGy~a~ 114 (202)
T PRK10729 68 EQIRIAAYDTSETPWLLEMVAGMIEE-GESVEDVARREAIEEAGLIVG 114 (202)
T ss_pred EeeecccccCCCCCeEEEccceEcCC-CCCHHHHHHHHHHHHhCceee
Confidence 579999954 899999999997 899999999999999999874
No 5
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.28 E-value=1.4e-11 Score=99.49 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=39.3
Q ss_pred ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|||++++.+.||+|||.+|. +|+|++||+|||+|||||++.
T Consensus 65 rq~r~~~~~~~~elPaG~ve~-gE~~~~aA~REl~EEtG~~~~ 106 (185)
T PRK11762 65 REYAAGTERYELGFPKGLIDP-GETPLEAANRELKEEVGFGAR 106 (185)
T ss_pred EeecCCCCCcEEEccceeCCC-CCCHHHHHHHHHHHHHCCCCc
Confidence 469999999999999999997 899999999999999999875
No 6
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.23 E-value=9.4e-12 Score=101.86 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=38.5
Q ss_pred ceeeecC-----CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 134 QKVRVPT-----GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 134 ~~~R~p~-----g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|||+|+ +.++||+|||++|. +|+|++||+|||+|||||.+.
T Consensus 63 rq~R~~~~~~~~~~~~lelPaG~ve~-gE~~~~aA~REl~EEtG~~~~ 109 (185)
T TIGR00052 63 EQFRIAAYVNGEEPWLLELSAGMVEK-GESPEDVARREAIEEAGYQVK 109 (185)
T ss_pred ECceeeeeecCCcceEEEECcEecCC-CCCHHHHHHHHccccccceec
Confidence 4699998 67899999999997 899999999999999999874
No 7
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.86 E-value=5e-09 Score=78.51 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.3
Q ss_pred CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 141 GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 141 g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
+...|++|+|.++. +|++.+||+||+.||||+++.+
T Consensus 23 ~~~~w~lPGG~ve~-gEs~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 23 GKTYYVFPGGGIEE-GETPEEAAKREALEELGLDVRV 58 (121)
T ss_pred CCCcEECCceeccC-CCCHHHHHHHHHHHhhCeeEee
Confidence 34578999999998 8999999999999999999865
No 8
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=98.83 E-value=1.1e-08 Score=79.11 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=34.2
Q ss_pred eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
|.+.+...|++|+|.+|. +|++++||+||+.||||+++..
T Consensus 33 ~~~~~~~~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~~~~ 72 (142)
T cd04700 33 KGGPKKGLWHIPSGAVED-GEFPQDAAVREACEETGLRVRP 72 (142)
T ss_pred cCCCCCCeEECCceecCC-CCCHHHHHHHHHHHhhCceeec
Confidence 444445678999999998 8999999999999999998863
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=98.76 E-value=4.9e-09 Score=80.48 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=29.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++|+|.+|. +|++++||+|||+||||+++
T Consensus 32 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 32 FWQSVTGSLEE-GETPAQTAIREVKEETGIDV 62 (148)
T ss_pred cEeCCcccCCC-CCCHHHHHHHHHHHHhCcCc
Confidence 57999999998 89999999999999999987
No 10
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.76 E-value=9.5e-09 Score=77.22 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=35.4
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|.+.+...|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 22 ~~~~~~~~~w~~PgG~ve~-gEs~~~aa~RE~~EE~Gl~~~ 61 (137)
T cd03424 22 YRPPVGGWLLELPAGLIDP-GEDPEEAARRELEEETGYEAG 61 (137)
T ss_pred eecCCCCEEEEeCCccCCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 5666666789999999998 899999999999999999873
No 11
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.71 E-value=9.8e-09 Score=84.67 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=34.2
Q ss_pred eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++|+..|.+ |+|||++|..++++++||+||++|||||...
T Consensus 54 ~~r~~~G~~--~~PGG~~e~~de~~~~tA~REl~EEtGl~~~ 93 (190)
T PRK10707 54 HLRKHAGQV--AFPGGAVDPTDASLIATALREAQEEVAIPPS 93 (190)
T ss_pred cccCCCCcE--EcCCcccCCCcccHHHHHHHHHHHHHCCCcc
Confidence 578888866 9999999963467999999999999999764
No 12
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.70 E-value=1e-08 Score=80.41 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+|||.||||+.+.
T Consensus 26 ~W~lPGG~ve~-gEs~~~AA~REl~EETGl~v~ 57 (145)
T cd03672 26 SWSFPKGKINK-DEDDHDCAIREVYEETGFDIS 57 (145)
T ss_pred CEECCCccCCC-CcCHHHHHHHHHHHhhCccce
Confidence 57999999998 899999999999999999875
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=98.68 E-value=1.6e-08 Score=77.10 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||+||++||||+++.
T Consensus 32 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 32 QWALSGGGVEP-GERIEEALRREIREELGEQLL 63 (141)
T ss_pred ceeCCcccCCC-CCCHHHHHHHHHHHHHCCcee
Confidence 57999999998 899999999999999999864
No 14
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=98.66 E-value=2.1e-08 Score=73.33 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=31.3
Q ss_pred cEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.-.|++|+|.+|. +|++++||+||+.||||+++..
T Consensus 24 ~~~w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~~ 58 (128)
T cd04684 24 EGRWDLPGGGIEP-GESPEEALHREVLEETGLTVEI 58 (128)
T ss_pred CCeEECCCcccCC-CCCHHHHHHHHHHHHhCcEeec
Confidence 3467999999998 8999999999999999998753
No 15
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.66 E-value=5.9e-08 Score=74.20 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|.+|+|.+|. +|++++||.||++||||+++.
T Consensus 28 w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 28 WLQPGGHIDP-DESLLEAALRELREETGIELL 58 (138)
T ss_pred EECCceecCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 4779999998 899999999999999999753
No 16
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.65 E-value=2e-08 Score=73.72 Aligned_cols=34 Identities=32% Similarity=0.289 Sum_probs=30.9
Q ss_pred cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.-.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 25 ~~~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 25 DGQWALPAGHLEK-GEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred CCeEeCCccccCC-CCCHHHHHHHHHHHHHCCccC
Confidence 3478999999998 899999999999999999875
No 17
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.65 E-value=1.9e-08 Score=73.30 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=30.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||+||++||||+.+.
T Consensus 24 ~w~~PgG~ve~-gEt~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 24 GWYLPGGGLER-GETFAEAARRELLEELGIRLA 55 (120)
T ss_pred cEeCCCCcCCC-CCCHHHHHHHHHHHHHCCccc
Confidence 67999999998 899999999999999999886
No 18
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.63 E-value=6.4e-08 Score=72.05 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++++||.||++||||+.+..
T Consensus 27 ~~w~~PGG~ve~-gEt~~~aa~RE~~EE~Gl~~~~ 60 (127)
T cd04670 27 NGWKLPGGLVDP-GEDIFDGAVREVLEETGIDTEF 60 (127)
T ss_pred CcEECCCccCCC-CCCHHHHHHHHHHHHHCCCcce
Confidence 467999999998 8999999999999999998753
No 19
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=98.63 E-value=2.2e-08 Score=73.60 Aligned_cols=33 Identities=27% Similarity=0.154 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||.||+.||||+.+..
T Consensus 28 ~w~~PgG~v~~-gEs~~~aa~REl~EEtGl~~~~ 60 (131)
T cd03673 28 DWSLPKGKLEP-GETPPEAAVREVEEETGIRAEV 60 (131)
T ss_pred cccCCCCccCC-CCCHHHHHHHHHhhhhCCceEe
Confidence 56999999998 8999999999999999998763
No 20
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.63 E-value=2.4e-08 Score=74.40 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=29.7
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
..|++|+|.+|. +|++++||+||+.||||+++
T Consensus 27 g~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~ 58 (117)
T cd04691 27 GKLNIPGGHIEA-GESQEEALLREVQEELGVDP 58 (117)
T ss_pred CeEECcceeecC-CCCHHHHHHHHHHHHHCCCc
Confidence 467999999998 89999999999999999985
No 21
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.62 E-value=3.3e-08 Score=74.03 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=31.5
Q ss_pred CcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 141 GRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 141 g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+...|++|+|.+|. +|++.+||.||+.||||+.+.
T Consensus 22 ~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~ 56 (134)
T cd03675 22 GGLVFNQPAGHLEP-GESLIEAAVRETLEETGWHVE 56 (134)
T ss_pred CCceEECCCccCCC-CCCHHHHHHHHHHHHHCcccc
Confidence 44578999999998 899999999999999999874
No 22
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.61 E-value=3.6e-08 Score=71.76 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=30.4
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-.|++|+|.++. +|++++||+||+.||||+++.
T Consensus 25 ~~w~~PgG~ie~-gE~~~~aa~RE~~EEtGl~~~ 57 (122)
T cd04673 25 GLWSFPGGKVEL-GETLEQAALRELLEETGLEAE 57 (122)
T ss_pred CeEECCCcccCC-CCCHHHHHHHHHHHhhCcEee
Confidence 367999999998 899999999999999999975
No 23
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.60 E-value=8.6e-08 Score=71.63 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=31.1
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++++||+||+.||||+++..
T Consensus 25 ~~~~lPGG~ve~-gEt~~~aa~RE~~EEtGl~v~~ 58 (128)
T cd04687 25 VWYILPGGGQEP-GETLEDAAHRECKEEIGIDVEI 58 (128)
T ss_pred CeEECCCcccCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 468999999998 8999999999999999999863
No 24
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.58 E-value=3.8e-08 Score=73.17 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||.||+.||||+.++
T Consensus 30 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 30 HWDLPGGHREG-GETPLECVLRELLEEIGLTLP 61 (122)
T ss_pred cEeCCCccccC-CCCHHHHHHHHHHHHhCCccc
Confidence 67999999998 899999999999999999875
No 25
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=98.58 E-value=3.3e-08 Score=72.06 Aligned_cols=33 Identities=27% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
..|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 30 ~~~~~pgG~i~~-~E~~~~aa~REl~EE~g~~~~ 62 (134)
T PF00293_consen 30 GYWELPGGGIEP-GESPEEAARRELKEETGLDVS 62 (134)
T ss_dssp TEEESSEEEECT-TSHHHHHHHHHHHHHHSEEEE
T ss_pred CeEecceeeEEc-CCchhhhHHhhhhhcccceec
Confidence 477999999998 899999999999999999974
No 26
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.58 E-value=3.8e-08 Score=79.86 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.||+|||.+|. +|++++||+|||.||||+.+.
T Consensus 46 ~~elPgG~vE~-gEt~~eaA~REl~EETG~~~~ 77 (156)
T TIGR02705 46 GLEFPGGKVEP-GETSKEAAIREVMEETGAIVK 77 (156)
T ss_pred cEECCceecCC-CCCHHHHHHHHHHHHhCcEee
Confidence 47999999998 899999999999999999874
No 27
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.58 E-value=8.5e-08 Score=73.66 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=29.0
Q ss_pred EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++ |+|.+|. +|++++||+|||.||||+.+.
T Consensus 34 ~W~~~~gG~ve~-gEt~~~aa~REl~EEtGl~~~ 66 (144)
T cd04692 34 LWDISSAGHILA-GETPLEDGIRELEEELGLDVS 66 (144)
T ss_pred ccccccCcccCC-CCCHHHHHHHHHHHHhCCCCC
Confidence 6799 5999998 899999999999999999764
No 28
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.58 E-value=1.3e-07 Score=74.32 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=33.6
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
+|.|.+. |++|+|.+++ +|++.+||+||+.||||+.+
T Consensus 19 ~r~~~~~--~~lPgG~ve~-~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 19 FEHPLAG--FQIVKGTVEP-GETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEcCCCc--EECCCccCCC-CCCHHHHHHHHHHHHHCCee
Confidence 7777755 5999999998 89999999999999999996
No 29
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.58 E-value=3.6e-08 Score=73.36 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=29.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||++||||+++.
T Consensus 27 ~w~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~ 58 (125)
T cd04696 27 LWGVPGGKVEW-GETLEEALKREFREETGLKLR 58 (125)
T ss_pred cEeCCceeccC-CCCHHHHHHHHHHHHhCCccc
Confidence 57999999998 899999999999999999874
No 30
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.57 E-value=4e-08 Score=72.98 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=30.8
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 28 ~~w~lPgG~ve~-gEt~~eaa~RE~~EEtGl~~~~ 61 (125)
T cd04679 28 GHWGIPGGKVDW-MEAVEDAVVREIEEETGLSIHS 61 (125)
T ss_pred CeEeCCeeeccC-CCCHHHHHHHHHHHHHCCCccc
Confidence 467999999998 8999999999999999998753
No 31
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.56 E-value=5.8e-08 Score=73.25 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|+++++|+||+.||||+++.+
T Consensus 38 g~w~lPgG~ve~-gE~~~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 38 GFWTLPAGFMEN-GETTEQGALRETWEEAGARVEI 71 (130)
T ss_pred CeEECCcccccC-CCCHHHHHHHHHHHHhCCEEEe
Confidence 468999999998 8999999999999999999865
No 32
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=98.56 E-value=5.7e-08 Score=72.13 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=29.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+++.
T Consensus 24 ~~~lPGG~ve~-gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 24 HYFLPGGHVEP-GETAENALRRELQEELGVAVS 55 (125)
T ss_pred CEECCCCcCCC-CCCHHHHHHHHHHHHhCceee
Confidence 57999999998 899999999999999999874
No 33
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.55 E-value=5.8e-08 Score=72.79 Aligned_cols=34 Identities=18% Similarity=-0.021 Sum_probs=30.7
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 26 ~~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~~ 59 (137)
T cd03427 26 GGWNGPGGKVEP-GETPEECAIRELKEETGLTIDN 59 (137)
T ss_pred CeEeCCceeCCC-CCCHHHHHHHHHHHhhCeEeec
Confidence 367999999998 8999999999999999998753
No 34
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.55 E-value=6.1e-08 Score=73.60 Aligned_cols=34 Identities=26% Similarity=0.126 Sum_probs=31.1
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++++||+||++||||+++..
T Consensus 26 ~~w~lPgG~ve~-gEt~~~aa~REl~EEtG~~~~~ 59 (123)
T cd04671 26 GKWYLPAGRMEP-GETIEEAVKREVKEETGLDCEP 59 (123)
T ss_pred CeEECceeecCC-CCCHHHHHHHHHHHHHCCeeec
Confidence 368999999998 8999999999999999999863
No 35
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.55 E-value=6.3e-08 Score=70.35 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=30.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||+||++||||+++.+
T Consensus 26 ~w~lPgG~v~~-~E~~~~aa~REl~EE~Gl~~~~ 58 (129)
T cd04676 26 LWALPGGAVEP-GESPADTAVREVREETGLDVEV 58 (129)
T ss_pred cEECCeeccCC-CCCHHHHHHHHHHHHhCceeEe
Confidence 57999999998 8999999999999999998753
No 36
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.55 E-value=6e-08 Score=68.60 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.0
Q ss_pred EEEEecccccCCCCCCHHH-HHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVG-TAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~-aA~REL~EETG~~i~ 176 (179)
..|++|+|.+|. +|++.. ||+||+.||||+.+.
T Consensus 36 ~~~~~PgG~ve~-~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 36 GLWELPGGKVEP-GEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CceecCCcccCC-CCchHHHHHHHHHHHHhCCeee
Confidence 357999999997 677788 999999999999876
No 37
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=98.54 E-value=3.8e-08 Score=73.00 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=29.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus 28 ~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~ 59 (130)
T cd03428 28 HWDFPKGHVEP-GEDDLEAALRETEEETGITAE 59 (130)
T ss_pred cCcCCcCCCCC-CCCHHHHHHHHHHHHHCCChh
Confidence 46999999998 899999999999999999875
No 38
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.54 E-value=6.4e-08 Score=76.31 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+++.
T Consensus 34 ~W~lPgG~ie~-~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 34 AWSIPKGEYTE-GEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEECCcccCCC-CcCHHHHHHHHHHHHhCCcce
Confidence 57999999998 899999999999999999864
No 39
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.54 E-value=6.7e-08 Score=73.88 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.++. +|++.+||.||+.||||+.+.+
T Consensus 27 ~W~fPgG~ve~-gEt~~eaa~REl~EEtGl~v~~ 59 (132)
T cd04661 27 HWILPQGKREE-GETLRQTAERTLKELCGNNLKA 59 (132)
T ss_pred eeECCcccccC-CCCHHHHHHHHHHHhhCCCceE
Confidence 67999999998 8999999999999999997664
No 40
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.53 E-value=6.2e-08 Score=73.66 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=29.1
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++|+|.+|. +|++.+||+||+.||||+++
T Consensus 23 ~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 23 DYKFPGGGVEK-GEDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEECccccCCC-CCCHHHHHHHHHHHHHCCcc
Confidence 47999999998 89999999999999999986
No 41
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.53 E-value=7.5e-08 Score=71.60 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.8
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++.+||.||+.||||+++..
T Consensus 23 ~~w~lPgG~ve~-gEs~~~aa~RE~~EEtGl~~~~ 56 (126)
T cd04688 23 TFYRPPGGGIEF-GESSEEALIREFKEELGLKIEI 56 (126)
T ss_pred CeEECCCccccC-CCCHHHHHHHHHHHHhCCceec
Confidence 367999999998 8999999999999999998753
No 42
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.53 E-value=7.4e-08 Score=71.40 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.++. +|++.+||.||+.||||+++..
T Consensus 31 ~w~~PgG~v~~-gEt~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 31 DWGLPGGAMEL-GESLEETARRELKEETGLEVEE 63 (132)
T ss_pred cEECCeeecCC-CCCHHHHHHHHHHHHhCCeeee
Confidence 36999999998 8999999999999999998753
No 43
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.51 E-value=7.8e-08 Score=70.19 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||+||+.||||+.+.
T Consensus 24 ~w~~PgG~ve~-~Es~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 24 VFYLPGGKIEA-GETPLQALIRELSEELGLDLD 55 (118)
T ss_pred cEECCCCccCC-CCCHHHHHHHHHHHHHCCccC
Confidence 57999999998 899999999999999999764
No 44
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.51 E-value=8e-08 Score=73.13 Aligned_cols=33 Identities=15% Similarity=-0.039 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|.+|+|.+|. +|++.+||+||+.||||+++..
T Consensus 27 ~w~~PgG~ve~-~E~~~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 27 RWIVPKGGPEK-DESPAEAAAREAWEEAGVRGKI 59 (122)
T ss_pred eEECCCCCcCC-CCCHHHHHHHHHHHHhCCcccc
Confidence 46999999998 8999999999999999998753
No 45
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=98.51 E-value=7.2e-08 Score=77.67 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=29.9
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||+||+.||||+.+.
T Consensus 44 ~W~lPGG~VE~-GEt~~~Aa~REl~EEtGl~v~ 75 (159)
T PRK15434 44 YWFVPGGRVQK-DETLEAAFERLTMAELGLRLP 75 (159)
T ss_pred cEECCceecCC-CCCHHHHHHHHHHHHHCCccc
Confidence 56999999998 899999999999999999874
No 46
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=98.49 E-value=8.4e-08 Score=75.44 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=29.5
Q ss_pred EEEecccccCCCC-CCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDK-GDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~-e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. + |++.+||.||+.||||+.+.
T Consensus 33 ~w~lPGG~ve~-gdEs~~eaa~REl~EEtGl~~~ 65 (157)
T cd03426 33 QVAFPGGKVDP-GDEDPVATALREAEEEIGLPPD 65 (157)
T ss_pred cEECCCCCcCC-CcCCHHHHHHHHHHHHhCCCcc
Confidence 56999999998 7 99999999999999999875
No 47
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.48 E-value=9.1e-08 Score=73.90 Aligned_cols=33 Identities=27% Similarity=0.198 Sum_probs=30.1
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
..|++|+|++|. +|++.+||.||++||||+++.
T Consensus 27 ~~W~~PgG~~e~-gE~~~~aA~REv~EEtGl~~~ 59 (147)
T cd03671 27 GAWQFPQGGIDE-GEDPEQAALRELEEETGLDPD 59 (147)
T ss_pred CCEECCcCCCCC-CcCHHHHHHHHHHHHHCCCcC
Confidence 467999999998 899999999999999999863
No 48
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.47 E-value=1.3e-07 Score=70.30 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+.+
T Consensus 25 ~w~~PGG~ve~-gEs~~~aa~REl~EEtG~~~~~ 57 (123)
T cd04672 25 LWSLPGGWADV-GLSPAENVVKEVKEETGLDVKV 57 (123)
T ss_pred cEeCCccccCC-CCCHHHHHHHHHHHHhCCeeeE
Confidence 56999999998 8999999999999999998754
No 49
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=98.47 E-value=1.1e-07 Score=73.91 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.++. +|++.+||+||++||||+.+..
T Consensus 39 ~w~lPGG~ve~-gEs~~~aa~RE~~EE~Gl~v~~ 71 (144)
T cd03430 39 YWFVPGGRIRK-NETLTEAFERIAKDELGLEFLI 71 (144)
T ss_pred cEECCCceecC-CCCHHHHHHHHHHHHHCCCccc
Confidence 57999999998 8999999999999999998753
No 50
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.46 E-value=1.2e-07 Score=70.57 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=29.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus 28 ~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~ 59 (130)
T cd04681 28 TLDLPGGFVDP-GESAEEALIREIREETGLKVT 59 (130)
T ss_pred cEeCCceeecC-CCCHHHHHHHHHHHHhCCccc
Confidence 68999999998 899999999999999999764
No 51
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.46 E-value=1.3e-07 Score=69.38 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=28.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++|+|.++. +|++.+||.||+.||||+.+
T Consensus 22 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~ 52 (112)
T cd04667 22 RWALPGGKIEP-GETPLQAARRELQEETGLQG 52 (112)
T ss_pred cEeCCCCcCCC-CCCHHHHHHHHHHHHhCCcc
Confidence 46999999998 89999999999999999986
No 52
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.45 E-value=9.9e-08 Score=72.70 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++|.|.| .+|+|.++. +|++++||+||+.||||+.+.
T Consensus 21 ~~~~~~w--~lPgG~ie~-gEt~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 21 RFPPGMY--SLLAGFVEP-GESLEEAVRREVKEEVGIRVK 57 (131)
T ss_pred CCCCCcC--cCCcccccC-CCCHHHHHhhhhhhccCceee
Confidence 3454544 789999998 899999999999999999874
No 53
>PLN02325 nudix hydrolase
Probab=98.45 E-value=3.8e-07 Score=71.21 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=30.9
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|.+|+|.+|. +|++.+||+||+.||||+++..
T Consensus 34 g~W~lPGG~ve~-gEs~~~aa~REv~EEtGl~v~~ 67 (144)
T PLN02325 34 STFALPGGHLEF-GESFEECAAREVKEETGLEIEK 67 (144)
T ss_pred CeEECCceeCCC-CCCHHHHHHHHHHHHHCCCCcc
Confidence 368999999998 8999999999999999998754
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.45 E-value=1.2e-07 Score=69.38 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=30.9
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.++. +|++.+||.||+.||||+.+..
T Consensus 29 g~w~~PgG~ve~-gEs~~~aa~RE~~EE~Gl~~~~ 62 (129)
T cd04699 29 GKWELPGGKVEE-GETFEEALKREVYEETGLTVTP 62 (129)
T ss_pred CcCcCCccCccC-CCCHHHHHHHHHHHhhCcEEEe
Confidence 368999999998 8999999999999999998764
No 55
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.45 E-value=1.3e-07 Score=71.40 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=28.7
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|.+|+|.++. +|++.+||.||+.||||+++.
T Consensus 29 w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~ 59 (131)
T cd04695 29 WCHVAGGVEA-GETAWQAALRELKEETGISLP 59 (131)
T ss_pred EECCcccccC-CCCHHHHHHHHHHHHhCCCcc
Confidence 4789999998 899999999999999999875
No 56
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.45 E-value=5.6e-07 Score=72.88 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=32.0
Q ss_pred eeecCCcE----EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 136 VRVPTGRV----ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 136 ~R~p~g~~----~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
+|.+.+.+ .+.+|+|.++. ||++++||+|||.||||+.+
T Consensus 55 ~R~~~~~~~pg~~~~~pGG~ve~-GEs~~eAA~REL~EEtGl~~ 97 (180)
T PRK15393 55 RRTETKDFLPGMLDATAGGVVQA-GEQLLESARREAEEELGIAG 97 (180)
T ss_pred EeCCCCCCCCCcccccCCCcCCC-CCCHHHHHHHHHHHHHCCCC
Confidence 67665543 23578999998 89999999999999999974
No 57
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.43 E-value=6.1e-07 Score=67.07 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=30.1
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.++. +|++.+||.||+.||||+.+..
T Consensus 31 ~w~~PgG~ve~-gE~~~~a~~RE~~EE~Gl~~~~ 63 (135)
T PRK10546 31 LWEFAGGKVEP-GESQPQALIRELREELGIEATV 63 (135)
T ss_pred cEECCcccCCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 67999999997 8999999999999999998753
No 58
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.42 E-value=1.8e-07 Score=71.82 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=29.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++|+|.+|. +|++++||+||+.||||+.+
T Consensus 22 ~w~lPgG~ve~-gE~~~~aa~REl~EE~G~~~ 52 (118)
T cd04665 22 GWEFPGGHVEP-GETIEEAARREVWEETGAEL 52 (118)
T ss_pred EEECCccccCC-CCCHHHHHHHHHHHHHCCcc
Confidence 58999999998 89999999999999999986
No 59
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.40 E-value=1.6e-07 Score=70.15 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=28.1
Q ss_pred EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++| +|.++. +|++ +||+||++||||+.+.
T Consensus 29 ~w~~p~GG~ve~-gE~~-~aa~REl~EEtGl~~~ 60 (127)
T cd04693 29 MWDLSVGGHVQA-GETS-TAAEREVKEELGLELD 60 (127)
T ss_pred cccccCCCcCCC-CCCH-HHHHHHHHHHhCCCcC
Confidence 57998 789998 8999 9999999999999875
No 60
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.39 E-value=1.9e-07 Score=69.67 Aligned_cols=32 Identities=25% Similarity=0.098 Sum_probs=29.5
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
..|++|+|.++. +|++.+||.||+.||||+.+
T Consensus 28 ~~w~~PgG~ve~-~Es~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 28 GFWQSVTGGIED-GESPAEAARREVAEETGLDP 59 (129)
T ss_pred CcccccCcccCC-CCCHHHHHHHHHHHHHCCCh
Confidence 366899999998 89999999999999999986
No 61
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.39 E-value=4.1e-07 Score=68.41 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=28.5
Q ss_pred EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++ |+|.++. +|++.++|+||+.||||+.+.
T Consensus 29 ~w~~~~GG~ve~-gE~~~~aa~REl~EEtGl~~~ 61 (126)
T cd04697 29 YWDIAFGGVVQA-GESYLQNAQRELEEELGIDGV 61 (126)
T ss_pred cccCcCCcccCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 4799 5789998 899999999999999999874
No 62
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=1.5e-06 Score=63.98 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=30.1
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-.|++|+|.++. +|+++++|.||+.||||+.+.
T Consensus 31 g~w~~Pgg~ve~-ge~~~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 31 KLLEFPGGKEEG-GETPEQAVVRELEEEIGIPQH 63 (128)
T ss_pred CeEECCCcccCC-CCCHHHHHHHHHHHHHCCcce
Confidence 378999999997 899999999999999999865
No 63
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.35 E-value=3.1e-07 Score=72.55 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|-+|+|.+|. ||++++||+||++||||+++.
T Consensus 36 ~WalPGG~ve~-GEt~eeaa~REl~EETgL~~~ 67 (145)
T COG1051 36 YWALPGGFVEI-GETLEEAARRELKEETGLRVR 67 (145)
T ss_pred cEeCCCccCCC-CCCHHHHHHHHHHHHhCCccc
Confidence 47999999998 899999999999999999964
No 64
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.34 E-value=3.9e-07 Score=67.79 Aligned_cols=34 Identities=29% Similarity=0.167 Sum_probs=30.5
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|.+|+|.++. +|++.+||.||+.||||+.+..
T Consensus 28 ~~w~~PGG~ve~-gEt~~~Aa~REl~EE~Gl~~~~ 61 (129)
T cd04678 28 GTWALPGGHLEF-GESFEECAAREVLEETGLHIEN 61 (129)
T ss_pred CeEECCcccccC-CCCHHHHHHHHHHHHhCCcccc
Confidence 367999999998 8999999999999999998653
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.30 E-value=5.8e-07 Score=63.39 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=29.9
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
..|++|+|.+|. +|++.++|+||++||+|+.+.
T Consensus 25 ~~~~~p~G~~~~-~e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 25 GLWELPGGGVEP-GETLEEAAIREVREETGLDVD 57 (123)
T ss_pred CeEeCCcccccC-CCCHHHHHHHHHHHhhCccce
Confidence 367999999998 899999999999999999874
No 66
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.28 E-value=4.2e-07 Score=78.31 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=33.0
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|.|.| .|.+|||.+|. +|++++||+||++||||+++.
T Consensus 151 ~~~~~g--~wslPgG~vE~-GEs~eeAa~REv~EEtGl~v~ 188 (256)
T PRK00241 151 PRHRNG--VYTVLAGFVEV-GETLEQCVAREVMEESGIKVK 188 (256)
T ss_pred cCCCCC--cEeCcccCCCC-CCCHHHHhhhhhhhccCceee
Confidence 666655 45899999998 899999999999999999864
No 67
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.28 E-value=1.7e-06 Score=68.41 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=30.2
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
..|++|+|.++. +|++.+||.||+.||||+.+.
T Consensus 32 ~~w~~P~G~~~~-gE~~~~aa~REl~EEtG~~~~ 64 (156)
T PRK00714 32 HSWQFPQGGIDP-GETPEQAMYRELYEEVGLRPE 64 (156)
T ss_pred CeEECCcccCCC-CcCHHHHHHHHHHHHhCCCcc
Confidence 468999999998 899999999999999999864
No 68
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.28 E-value=2.8e-06 Score=61.99 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=29.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.++|.||+.||||+.+.
T Consensus 32 ~w~~PgG~~~~-gE~~~~a~~Re~~EE~gl~~~ 63 (129)
T PRK10776 32 KWEFPGGKIEA-GETPEQALIRELQEEVGITVQ 63 (129)
T ss_pred eEECCceecCC-CCCHHHHHHHHHHHHHCCcee
Confidence 67999999997 899999999999999998853
No 69
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.23 E-value=9.5e-07 Score=68.26 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=30.7
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|++.+||+||+.||||+++..
T Consensus 29 ~~w~lPgG~ve~-~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 29 GKLALPGGFIEL-GETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CeEECCceecCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 357999999998 8999999999999999998753
No 70
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.17 E-value=2e-06 Score=61.68 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.9
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-.|++|+|.++. +|+++++|.||+.||||+.+.
T Consensus 28 g~w~~p~G~~~~-~e~~~~~a~Re~~EE~g~~~~ 60 (124)
T cd03425 28 GLWEFPGGKVEP-GETPEQALVRELREELGIEVE 60 (124)
T ss_pred CeEeCCCcccCC-CCCHHHHHHHHHHHhhCcEEe
Confidence 378999999997 799999999999999999864
No 71
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.16 E-value=1.2e-06 Score=70.11 Aligned_cols=32 Identities=28% Similarity=0.065 Sum_probs=29.1
Q ss_pred EE-EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 IL-ELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~l-ElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.| ++|||.++. +|++.+||+||++||||+.+.
T Consensus 65 ~wd~~~~G~v~~-gE~~~~aA~REl~EE~Gl~~~ 97 (180)
T cd03676 65 MLDNLVAGGLGH-GEGPEETLVKECDEEAGLPED 97 (180)
T ss_pred ceeeecccCCCC-CCCHHHHHHHHHHHHhCCCHH
Confidence 45 799999998 899999999999999999865
No 72
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.16 E-value=1.2e-06 Score=69.20 Aligned_cols=32 Identities=9% Similarity=-0.172 Sum_probs=28.5
Q ss_pred EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++| +|.+|. +|++++||+||+.||||+.+.
T Consensus 59 ~w~~~~gG~ie~-GEt~~eaa~REl~EEtGl~~~ 91 (165)
T cd02885 59 LWTNTCCSHPLP-GEGVKDAAQRRLREELGITGD 91 (165)
T ss_pred cccccccCCCCC-CCCHHHHHHHHHHHHhCCCcc
Confidence 45775 799998 899999999999999999875
No 73
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.13 E-value=5.5e-06 Score=64.13 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=30.0
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
..|++|+|.++. +|++.+||.||+.||||+.+
T Consensus 28 ~~w~~PgG~ve~-gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 28 DWWFTPGGGVEP-GESPEQAARRELREETGITV 59 (133)
T ss_pred CEEECCcCCCCC-CCCHHHHHHHHHHHHHCCcc
Confidence 478999999998 89999999999999999987
No 74
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.10 E-value=2.2e-06 Score=76.09 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.7
Q ss_pred cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.-.|.+|+|.+|. +|++++||+||+.||||+++.
T Consensus 227 ~g~W~lPGG~ve~-gEt~~~Aa~REl~EETGl~v~ 260 (340)
T PRK05379 227 KGLWALPGGFLEQ-DETLLDACLRELREETGLKLP 260 (340)
T ss_pred CCeEECCcccCCC-CCCHHHHHHHHHHHHHCCccc
Confidence 4467999999998 899999999999999999864
No 75
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.06 E-value=2.5e-06 Score=68.97 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=27.4
Q ss_pred EEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 145 LELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 145 lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|.+| +|.++. +|++++||+||+.||||+++.
T Consensus 64 w~~~~gG~ve~-GEt~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 64 WTNSCCGHPQP-GESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred ccccccCCCCC-CCCHHHHHHHHHHHHhCCCcc
Confidence 4665 799998 899999999999999999874
No 76
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.01 E-value=4.6e-06 Score=65.66 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||+||+.||||+.+.
T Consensus 30 ~w~~PgG~v~~-~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 30 VWVPPGGHVEL-GENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred eEECcccccCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 67999999998 899999999999999999875
No 77
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=97.85 E-value=8.6e-06 Score=73.73 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred CceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 133 GQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 133 G~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|++-|+|-| +|-.+||-+++ ||+.++||+||..||||++++
T Consensus 205 ~R~~r~~~g--l~t~lAGFlEp-GES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 205 GRQKRYPPG--LWTCLAGFLEP-GESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred ecccCCCCc--hhhhhhccCCc-cccHHHHHHHHHHHHhCceee
Confidence 456899988 67999999998 999999999999999999986
No 78
>PRK08999 hypothetical protein; Provisional
Probab=97.72 E-value=9.8e-05 Score=63.37 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=29.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++.++|.||+.||||+.+.
T Consensus 33 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~ 64 (312)
T PRK08999 33 LWEFPGGKVEP-GETVEQALARELQEELGIEVT 64 (312)
T ss_pred eEECCccCCCC-CCCHHHHHHHHHHHHhCCcee
Confidence 78999999997 899999999999999999864
No 79
>PLN02709 nudix hydrolase
Probab=97.65 E-value=3.1e-05 Score=66.43 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=28.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|.+|+|++|++++++.+||.||++||+|+...
T Consensus 68 qiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 68 EVALPGGKRDEEDKDDIATALREAREEIGLDPS 100 (222)
T ss_pred CccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence 348999999984468999999999999999753
No 80
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=97.65 E-value=2.8e-05 Score=64.88 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=27.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD 174 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~ 174 (179)
.|.+|+|.+|. +|++.+||+|||.||||+.
T Consensus 61 ~walPGG~v~~-~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 61 EWAIPGGMVDP-GEKISATLKREFGEEALNS 90 (186)
T ss_pred cCcCCeeeccC-CCCHHHHHHHHHHHHHccc
Confidence 47999999998 8999999999999999764
No 81
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=97.47 E-value=6.8e-05 Score=59.28 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=25.5
Q ss_pred EEEec-ccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELP-AGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElP-AG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++| +|.++. +| .+||.||++||||+.+.
T Consensus 56 ~W~~~~gG~v~~-GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 56 VWTNSCCSHPLP-GE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred CccccccCCCCc-cc--HHHHHHHHHHHHCCCcc
Confidence 56887 689997 77 59999999999999864
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0021 Score=57.17 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=32.0
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-|+.-| ++-+-||-|+. ||+.++|.+||+.||+|++|.
T Consensus 163 ~~h~~g--~yS~LAGFVE~-GETlE~AV~REv~EE~Gi~V~ 200 (279)
T COG2816 163 PRHFPG--MYSLLAGFVEP-GETLEQAVAREVFEEVGIKVK 200 (279)
T ss_pred CCCCCc--ceeeeeecccC-CccHHHHHHHHHHHhhCeEEe
Confidence 444433 55788999998 999999999999999999985
No 83
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.42 E-value=0.0022 Score=52.47 Aligned_cols=32 Identities=22% Similarity=0.049 Sum_probs=29.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-|.||-|..++ +|+|..+|+||..||+|+.|+
T Consensus 37 AWSIPKGey~~-gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 37 AWSIPKGEYTG-GEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cccccccccCC-CcCHHHHHHHHhhhhhceeec
Confidence 46999999998 899999999999999999874
No 84
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=96.11 E-value=0.0042 Score=54.51 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.6
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
+-+|+|+.|..+++.+.+|.||.+||.|+..
T Consensus 76 v~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 76 VCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred eeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 3799999998677899999999999999864
No 85
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.04 E-value=0.0051 Score=56.29 Aligned_cols=34 Identities=24% Similarity=0.065 Sum_probs=31.3
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
+++|++||.+|. +-+|.+.|..|+.||.||++..
T Consensus 79 ~tielc~g~idk-e~s~~eia~eev~eecgy~v~~ 112 (405)
T KOG4432|consen 79 YTIELCAGLIDK-ELSPREIASEEVAEECGYRVDP 112 (405)
T ss_pred eeeeeecccccc-ccCHHHHhHHHHHHHhCCcCCh
Confidence 689999999998 5799999999999999999864
No 86
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=95.93 E-value=0.0069 Score=49.55 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=28.6
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
|=+|.|.+|+ +|+..+||.||..||.|.+-.+
T Consensus 38 wi~PKGGwE~-dE~~~eAA~REt~EEAGv~G~l 69 (145)
T KOG2839|consen 38 WIVPKGGWEP-DESVEEAALRETWEEAGVKGKL 69 (145)
T ss_pred ccCCCCCCCC-CCCHHHHHHHHHHHHhCceeee
Confidence 4689999998 7999999999999999987654
No 87
>PLN02791 Nudix hydrolase homolog
Probab=95.86 E-value=0.0052 Score=61.09 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=27.8
Q ss_pred EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|.+ |+|.++. +|++.++|.|||+||+|+.+.
T Consensus 62 ~WDiS~gGHv~a-GEs~~eAA~REL~EELGI~l~ 94 (770)
T PLN02791 62 QWDISSAGHISA-GDTSLLSAQRELEEELGIILP 94 (770)
T ss_pred cccCcCCCCCCC-CCCHHHHHHHHHHHHhCCCCC
Confidence 4455 8999998 899999999999999999753
No 88
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=93.81 E-value=0.044 Score=47.70 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhCcee
Q 030311 159 FVGTAVREVSFILLLDF 175 (179)
Q Consensus 159 p~~aA~REL~EETG~~i 175 (179)
..+||+|||.||||+.+
T Consensus 117 ~~eAA~REL~EElGI~~ 133 (247)
T PLN02552 117 VKNAAQRKLLHELGIPA 133 (247)
T ss_pred HHHHHHhHHHHHhCCCc
Confidence 67899999999999984
No 89
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=93.33 E-value=0.079 Score=48.69 Aligned_cols=33 Identities=36% Similarity=0.186 Sum_probs=28.8
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.++|++||.+|+ .-+..+.|+||..||.||.+-
T Consensus 284 vTlELcag~Vd~-p~s~~e~a~~e~veecGYdlp 316 (405)
T KOG4432|consen 284 VTLELCAGRVDD-PFSDPEKAARESVEECGYDLP 316 (405)
T ss_pred eeeeeecccCCC-CcccHHHHHHHHHHHhCCCCC
Confidence 689999999997 467778899999999999863
No 90
>PLN02839 nudix hydrolase
Probab=92.69 E-value=0.069 Score=49.44 Aligned_cols=30 Identities=20% Similarity=-0.024 Sum_probs=26.7
Q ss_pred EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 146 ELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 146 ElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-+.||++.. +++|.++++||..||.|+..+
T Consensus 238 n~VAGGi~a-Gesp~etliREa~EEAgLp~~ 267 (372)
T PLN02839 238 HLVAGGLPH-GISCGENLVKECEEEAGISKA 267 (372)
T ss_pred hccccCccC-CCCHHHHHHHHHHHHcCCCHH
Confidence 577899987 899999999999999999754
No 91
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=92.06 E-value=0.1 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhh
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFIL 171 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EET 171 (179)
.|.||+||+|+ +|..-.+-+||+.||.
T Consensus 151 ~WAiPGGmvdp-GE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 151 EWAIPGGMVDP-GEKVSATLKREFGEEA 177 (275)
T ss_pred cccCCCCcCCc-hhhhhHHHHHHHHHHH
Confidence 35899999998 8999999999999996
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=91.61 E-value=0.088 Score=47.42 Aligned_cols=37 Identities=30% Similarity=0.237 Sum_probs=30.7
Q ss_pred eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311 137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLD 174 (179)
Q Consensus 137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~ 174 (179)
....++-.|-+|.|.+++ +|++.+.|.||++||||.+
T Consensus 137 ~~~~~~~~wK~ptG~v~~-~e~i~~gavrEvkeetgid 173 (295)
T KOG0648|consen 137 GAVKIRGGWKLPTGRVEE-GEDIWHGAVREVKEETGID 173 (295)
T ss_pred cceeecccccccceEecc-cccchhhhhhhhHHHhCcc
Confidence 333444578999999997 8999999999999999964
No 93
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=86.09 E-value=0.89 Score=32.35 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.2
Q ss_pred eeecCCcE--EEEecccccCCCCCCHHHHHHHHHhhhhC
Q 030311 136 VRVPTGRV--ILELPAGMLDDDKGDFVGTAVREVSFILL 172 (179)
Q Consensus 136 ~R~p~g~~--~lElPAG~lD~~~e~p~~aA~REL~EETG 172 (179)
-|..-|-| +||+|.|.++. +++.+++..||+.||.+
T Consensus 20 kR~~~gl~~glwefP~~~~~~-~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 20 KRPEKGLLAGLWEFPSVEWEE-EADGEEALLSALKKALR 57 (118)
T ss_pred ECCCCCCCCcceeCCCccccC-CcCHHHHHHHHHHHHhC
Confidence 35444444 89999998886 67888888899988864
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=77.85 E-value=0.61 Score=42.99 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=28.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-|-+|-|+++. +|+-.+||.||+.||||...+
T Consensus 107 sw~fprgK~~k-desd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 107 SWSFPRGKISK-DESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred cccccCccccc-cchhhhcchhcccchhhcCHH
Confidence 57899999997 689999999999999998753
No 95
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=74.47 E-value=21 Score=27.48 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=39.5
Q ss_pred eCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeE--EEEEEEEEEEeCc
Q 030311 64 AAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLL--KQVLIQGVDMFGK 116 (179)
Q Consensus 64 ~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~L--r~i~iq~vd~fG~ 116 (179)
|.|.-.-+.|..++..++.+.|.++.+. +..+|+|-- .++.|.+++.+..
T Consensus 16 lg~~~~~~~L~~vl~g~ll~~w~~~a~~---~~~~g~y~~y~~~~~I~sv~~~~~ 67 (117)
T PF13355_consen 16 LGPPHDIDSLSEVLTGPLLSQWQDRAQW---LKANGWYWEYDHKLKIDSVEVFSD 67 (117)
T ss_pred hCCCcchhHHHHHhhHHHHHHHHHHHHH---HHHcCCeEEEeeeeEEEEEEEcCC
Confidence 4555666789999999999999998875 355676666 6889999999863
No 96
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=50.66 E-value=31 Score=23.11 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=20.9
Q ss_pred ceeEEEeCCCCCCCeEEEeCCCCCHHHHhhhhhCchHHHHHHH
Q 030311 46 LTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKN 88 (179)
Q Consensus 46 ~t~t~~~p~~~~~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~ 88 (179)
-++.|.+.+. ...+.....++|..+|. +|+.|+++
T Consensus 4 ~~~ki~~~~~--~Gl~y~vT~~~s~~~L~------k~~~wld~ 38 (45)
T PF12123_consen 4 MTAKIIFQSK--DGLPYFVTDPLSDAELD------KFTAWLDE 38 (45)
T ss_dssp --EEEEE-T---TS-EEEEE----HHHHH------HHHHHHHH
T ss_pred cEEEEEEecC--CCcEEEEeCCCCHHHHH------HHHHHHHh
Confidence 3567777763 45777778889999998 79999986
No 97
>PF13014 KH_3: KH domain
Probab=42.42 E-value=21 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.+||++|||.+|.+.
T Consensus 10 G~~I~~I~~~tg~~I~i~ 27 (43)
T PF13014_consen 10 GSTIKEIREETGAKIQIP 27 (43)
T ss_pred ChHHHHHHHHhCcEEEEC
Confidence 346889999999999864
No 98
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=33.57 E-value=1e+02 Score=23.96 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=33.5
Q ss_pred ceeEEEEEEEEEEEeCceeeEEEEEEEEEecCCCceeeecCCcEE-EEecc
Q 030311 100 DMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVI-LELPA 149 (179)
Q Consensus 100 ~~~Lr~i~iq~vd~fG~~~gFlk~~adv~~~~~G~~~R~p~g~~~-lElPA 149 (179)
-..|+.|.| ..|..|...++.--...|.+..+|++|.+|..+|+ .+-.-
T Consensus 52 LG~L~~irI-wHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~D 101 (114)
T cd01757 52 LGKLTTVQI-GHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVDD 101 (114)
T ss_pred cCCcEEEEE-EECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCCc
Confidence 346777777 46667755455444566777788999999999995 34433
No 99
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.81 E-value=36 Score=23.07 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.|+|+||||.+|.++
T Consensus 21 G~~ik~I~~~tg~~I~i~ 38 (61)
T cd02393 21 GKTIKKIIEETGVKIDIE 38 (61)
T ss_pred chHHHHHHHHHCCEEEeC
Confidence 457889999999999864
No 100
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=32.47 E-value=2.3e+02 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=35.2
Q ss_pred CCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEEEeCceeeEEEEEEEEE
Q 030311 58 QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIF 128 (179)
Q Consensus 58 ~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~adv~ 128 (179)
..|.|.+.+- .|..+-.||+.|+..-|+ .+..+++ +. ++.-|+|++++-..
T Consensus 125 e~vQVwld~v----------~F~~ll~WL~~L~~q~GV------~V~~ldl---~~-~~~pG~V~V~RL~L 175 (178)
T PRK09731 125 ENIQVWIEPV----------VFNDLLNWLNALDEKYAL------RVTQIDV---SA-AEKPGMVNVQRLEF 175 (178)
T ss_pred CEEEEEECCC----------CHHHHHHHHHHHHHhcCc------eEEEEee---ec-CCCCCEEEEEEEEe
Confidence 5699998763 477899999999886443 3333333 22 56778998877654
No 101
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=30.27 E-value=41 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=11.6
Q ss_pred cccccCCCCCCHHHHHHHHHhhhh
Q 030311 148 PAGMLDDDKGDFVGTAVREVSFIL 171 (179)
Q Consensus 148 PAG~lD~~~e~p~~aA~REL~EET 171 (179)
-+|...+ +--|...|.|||-||.
T Consensus 14 lggLasP-gPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASP-GPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred hcccCCC-CCCCchHHHHHHHHHH
Confidence 3455555 5568888999999995
No 102
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=29.01 E-value=1.2e+02 Score=22.83 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=32.7
Q ss_pred eeEEEEEEEEEEEeCceeeEEEEEEEEEecCCCceeeecCCcEE-EEecccccC
Q 030311 101 MLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVI-LELPAGMLD 153 (179)
Q Consensus 101 ~~Lr~i~iq~vd~fG~~~gFlk~~adv~~~~~G~~~R~p~g~~~-lElPAG~lD 153 (179)
..|.+|.| ..|..|..-++.--...|.+..+|++|.+|+.+|+ .+-.-|+++
T Consensus 62 G~l~~i~l-~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~~~d~~~~ 114 (120)
T cd01752 62 GELQSIRL-WHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVEEGDGTVE 114 (120)
T ss_pred CCccEEEE-EECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCcCCCCEEE
Confidence 34666666 45666654444433456677788999999999984 344444443
No 103
>PRK15184 curli production assembly/transport protein CsgG; Provisional
Probab=28.32 E-value=2.4e+02 Score=25.58 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=28.7
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhh
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFIL 171 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EET 171 (179)
||+-..+.++|+=+|.-.. .|...|.|++-|..
T Consensus 206 Frfv~~~~lle~e~G~t~n---EP~qlaVr~aIE~A 238 (277)
T PRK15184 206 FRFIDYQRLLEGEVGYTSN---EPVMLCLMSAIETG 238 (277)
T ss_pred EEEeccceeEEeecCcccC---ChHHHHHHHHHHHH
Confidence 9998888899999998875 49999999999875
No 104
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=26.02 E-value=36 Score=28.86 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=27.0
Q ss_pred eecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCc
Q 030311 137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLL 173 (179)
Q Consensus 137 R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~ 173 (179)
|...+.++--.|.+|+++ ++..+-.+-|++|+|-
T Consensus 29 ~~g~~~~~~~~p~~mv~E---~~~~aL~~aL~~elG~ 62 (188)
T TIGR02019 29 AAGQGVLRPGPPSGMLPE---SQFSTLHRWLRDTLGE 62 (188)
T ss_pred HcCcccccCCCchhcCCH---HHHHHHHHHHHHHhCH
Confidence 444566778899999995 6888888889999884
No 105
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.85 E-value=36 Score=26.62 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhCceeeec
Q 030311 159 FVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 159 p~~aA~REL~EETG~~i~~~ 178 (179)
|-+.-.|+|+||||.+|.+.
T Consensus 23 PgG~tiK~i~~eTg~kI~Ir 42 (120)
T cd02395 23 PRGNTLKQLEKETGAKISIR 42 (120)
T ss_pred CCChHHHHHHHHHCCEEEEe
Confidence 44567889999999999874
No 106
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=23.77 E-value=58 Score=31.69 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhCceeeec
Q 030311 160 VGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 160 ~~aA~REL~EETG~~i~~~ 178 (179)
+++|..||.|+|||.++..
T Consensus 44 ~eaal~al~E~tgy~l~ve 62 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVE 62 (506)
T ss_pred HHHHHHHHHHhcCceEEEe
Confidence 7889999999999998753
No 107
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=22.38 E-value=1.1e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCcEEEEecccccCCCCCCHHHHHHHHHhhhhC
Q 030311 140 TGRVILELPAGMLDDDKGDFVGTAVREVSFILL 172 (179)
Q Consensus 140 ~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG 172 (179)
+|..+.-+|+|.+.+ |||-++..+|=+-|-.|
T Consensus 91 ig~tf~KLPGG~L~p-GE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 91 IGNTFFKLPGGRLRP-GEDEADGLKRLLTESLG 122 (221)
T ss_pred eCCEEEecCCCccCC-CcchhHHHHHHHHHHhc
Confidence 366788999999998 89988888888888887
No 108
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=22.12 E-value=70 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhCceeeec
Q 030311 160 VGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 160 ~~aA~REL~EETG~~i~~~ 178 (179)
.+.-.++|+++||..|.++
T Consensus 18 ~G~~i~~I~~~t~~~I~i~ 36 (60)
T PF00013_consen 18 KGSNIKEIEEETGVKIQIP 36 (60)
T ss_dssp GGHHHHHHHHHHTSEEEEE
T ss_pred CCCcHHHhhhhcCeEEEEc
Confidence 4567899999999998764
No 109
>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional
Probab=20.05 E-value=95 Score=21.83 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHhh
Q 030311 156 KGDFVGTAVREVSF 169 (179)
Q Consensus 156 ~e~p~~aA~REL~E 169 (179)
+.+|...|.+|+.|
T Consensus 36 ~~kPv~iAl~Ei~~ 49 (62)
T PRK01099 36 STDPLDIAEEEFKR 49 (62)
T ss_pred CCCHHHHHHHHHHc
Confidence 46899999999965
Done!