Query 030311
Match_columns 179
No_of_seqs 239 out of 1146
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 19:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g0s_A Hypothetical 23.7 kDa p 99.3 6.4E-12 2.2E-16 100.9 6.6 41 135-176 77-122 (209)
2 3o6z_A GDP-mannose pyrophospha 99.3 9E-12 3.1E-16 98.4 7.3 77 95-176 12-110 (191)
3 2dsc_A ADP-sugar pyrophosphata 99.2 7.6E-11 2.6E-15 94.2 10.5 42 134-176 83-124 (212)
4 1vhz_A ADP compounds hydrolase 99.2 7.8E-11 2.7E-15 93.9 8.0 41 135-176 67-107 (198)
5 2w4e_A MUTT/nudix family prote 99.0 1.1E-10 3.8E-15 87.2 4.2 41 135-176 24-64 (145)
6 1mk1_A ADPR pyrophosphatase; n 99.0 1E-09 3.5E-14 87.4 7.8 41 135-176 62-103 (207)
7 3q91_A Uridine diphosphate glu 99.0 1.9E-10 6.4E-15 94.6 2.6 34 142-175 94-127 (218)
8 2yvp_A NDX2, MUTT/nudix family 98.9 3.3E-09 1.1E-13 81.5 7.7 40 136-176 61-100 (182)
9 1v8y_A ADP-ribose pyrophosphat 98.8 3.3E-09 1.1E-13 80.9 5.0 39 136-176 53-91 (170)
10 3shd_A Phosphatase NUDJ; nudix 98.8 6.4E-09 2.2E-13 77.0 6.3 38 139-177 25-62 (153)
11 3u53_A BIS(5'-nucleosyl)-tetra 98.8 4.4E-09 1.5E-13 79.0 4.7 32 144-176 37-68 (155)
12 3i7u_A AP4A hydrolase; nudix p 98.8 1.2E-08 4E-13 76.3 6.5 32 145-177 27-58 (134)
13 2b0v_A Nudix hydrolase; struct 98.7 1.7E-08 5.7E-13 74.3 6.3 35 142-177 32-66 (153)
14 3f6a_A Hydrolase, nudix family 98.7 5.4E-09 1.8E-13 78.5 3.5 33 144-177 29-61 (159)
15 3eds_A MUTT/nudix family prote 98.7 1.7E-08 6E-13 75.6 5.9 33 144-177 44-76 (153)
16 3son_A Hypothetical nudix hydr 98.7 5.5E-09 1.9E-13 77.2 3.0 33 144-177 32-64 (149)
17 3id9_A MUTT/nudix family prote 98.7 2.3E-08 8E-13 75.6 6.1 34 143-177 46-79 (171)
18 3gg6_A Nudix motif 18, nucleos 98.7 9.8E-09 3.3E-13 76.4 3.7 34 143-177 46-79 (156)
19 2yyh_A MUTT domain, 8-OXO-DGTP 98.7 1E-08 3.6E-13 74.9 3.6 32 145-177 39-70 (139)
20 2pbt_A AP4A hydrolase; nudix p 98.7 1.3E-08 4.5E-13 73.1 3.7 33 144-177 26-58 (134)
21 1f3y_A Diadenosine 5',5'''-P1, 98.7 1.2E-08 4.2E-13 75.5 3.6 32 144-176 39-70 (165)
22 3oga_A Nucleoside triphosphata 98.7 1.2E-08 4.1E-13 76.8 3.5 32 144-176 56-87 (165)
23 3fcm_A Hydrolase, nudix family 98.6 3.9E-08 1.3E-12 77.1 6.4 32 144-176 70-102 (197)
24 2o1c_A DATP pyrophosphohydrola 98.6 3.2E-08 1.1E-12 71.9 5.5 32 144-176 35-66 (150)
25 1vcd_A NDX1; nudix protein, di 98.6 2E-08 6.8E-13 71.7 3.9 33 144-177 25-57 (126)
26 1ktg_A Diadenosine tetraphosph 98.6 2.1E-08 7.3E-13 72.6 3.9 30 144-174 31-60 (138)
27 3gwy_A Putative CTP pyrophosph 98.6 2.2E-08 7.4E-13 73.5 3.8 33 144-177 35-67 (140)
28 2azw_A MUTT/nudix family prote 98.6 2.2E-08 7.5E-13 73.1 3.7 33 144-177 42-74 (148)
29 2pqv_A MUTT/nudix family prote 98.6 2.4E-08 8.3E-13 74.1 3.8 33 144-177 40-72 (154)
30 1k2e_A Nudix homolog; nudix/MU 98.6 2.2E-08 7.7E-13 75.2 3.7 33 144-177 24-56 (156)
31 3h95_A Nucleoside diphosphate- 98.6 3.7E-08 1.3E-12 77.5 5.0 33 144-177 53-85 (199)
32 2fvv_A Diphosphoinositol polyp 98.6 2.2E-08 7.5E-13 79.7 3.7 33 144-177 67-99 (194)
33 1sjy_A MUTT/nudix family prote 98.6 2.4E-08 8.3E-13 73.9 3.6 33 143-176 43-75 (159)
34 4dyw_A MUTT/nudix family prote 98.6 2.5E-08 8.6E-13 75.2 3.6 34 143-177 54-87 (157)
35 3r03_A Nudix hydrolase; struct 98.6 7.9E-08 2.7E-12 70.0 6.1 33 144-177 36-68 (144)
36 2jvb_A Protein PSU1, mRNA-deca 98.6 1.7E-08 5.8E-13 74.1 2.3 32 144-176 29-60 (146)
37 3i9x_A MUTT/nudix family prote 98.6 2.3E-08 7.8E-13 77.7 3.1 33 143-176 67-99 (187)
38 2b06_A MUTT/nudix family prote 98.6 3.5E-08 1.2E-12 73.1 3.9 31 145-176 38-68 (155)
39 3grn_A MUTT related protein; s 98.6 2.7E-08 9.2E-13 74.0 3.2 34 143-177 36-69 (153)
40 3exq_A Nudix family hydrolase; 98.6 2.8E-08 9.5E-13 75.3 3.2 31 145-176 39-69 (161)
41 3q93_A 7,8-dihydro-8-oxoguanin 98.5 6.9E-08 2.4E-12 74.8 5.1 32 144-176 51-82 (176)
42 3cng_A Nudix hydrolase; struct 98.5 4.4E-08 1.5E-12 76.5 3.8 33 144-177 66-98 (189)
43 3q1p_A Phosphohydrolase (MUTT/ 98.5 4.7E-08 1.6E-12 77.8 3.7 33 144-177 91-123 (205)
44 2xsq_A U8 snoRNA-decapping enz 98.5 3.5E-08 1.2E-12 80.7 2.9 32 144-176 76-108 (217)
45 3f13_A Putative nudix hydrolas 98.5 4E-08 1.4E-12 76.1 2.8 32 144-176 38-69 (163)
46 1rya_A GDP-mannose mannosyl hy 98.5 5E-08 1.7E-12 72.2 3.2 32 144-176 45-76 (160)
47 1nqz_A COA pyrophosphatase (MU 98.5 4.4E-08 1.5E-12 76.1 3.0 32 144-176 65-96 (194)
48 3hhj_A Mutator MUTT protein; n 98.5 1.4E-07 4.8E-12 70.4 5.4 33 144-177 57-89 (158)
49 3ees_A Probable pyrophosphohyd 98.5 6.9E-08 2.4E-12 70.6 3.7 33 144-177 49-81 (153)
50 2fkb_A Putative nudix hydrolas 98.5 6.9E-08 2.3E-12 73.6 3.5 31 144-175 66-97 (180)
51 2rrk_A ORF135, CTP pyrophospho 98.5 7.2E-08 2.4E-12 69.7 3.4 32 144-176 36-67 (140)
52 1mut_A MUTT, nucleoside tripho 98.5 5.1E-08 1.7E-12 69.4 2.3 33 143-176 31-63 (129)
53 1hzt_A Isopentenyl diphosphate 98.5 7.5E-08 2.6E-12 74.7 3.3 32 144-176 61-93 (190)
54 3o8s_A Nudix hydrolase, ADP-ri 98.4 9.2E-08 3.2E-12 76.1 3.7 33 144-177 92-124 (206)
55 3fk9_A Mutator MUTT protein; s 98.4 8.8E-08 3E-12 75.3 3.4 32 144-176 27-58 (188)
56 2a6t_A SPAC19A8.12; alpha/beta 98.4 6.4E-08 2.2E-12 81.5 2.3 32 144-176 127-158 (271)
57 2kdv_A RNA pyrophosphohydrolas 98.4 9.8E-08 3.4E-12 73.1 3.0 32 144-176 32-63 (164)
58 1u20_A U8 snoRNA-binding prote 98.4 1.1E-07 3.7E-12 76.6 2.8 32 144-176 67-99 (212)
59 3fjy_A Probable MUTT1 protein; 98.4 1.7E-07 5.8E-12 80.5 3.9 33 144-177 50-82 (364)
60 2fb1_A Conserved hypothetical 98.4 1.3E-07 4.5E-12 77.0 3.0 32 144-176 43-74 (226)
61 1q27_A Putative nudix hydrolas 98.4 8.6E-08 3E-12 72.5 1.7 32 144-176 63-95 (171)
62 2qjo_A Bifunctional NMN adenyl 98.3 1.7E-07 5.9E-12 78.0 3.0 32 144-176 229-260 (341)
63 2qjt_B Nicotinamide-nucleotide 98.3 2E-07 6.7E-12 78.4 3.1 32 144-176 234-265 (352)
64 1q33_A Pyrophosphatase, ADP-ri 98.3 2.3E-07 7.8E-12 78.9 3.2 31 144-175 151-181 (292)
65 2fml_A MUTT/nudix family prote 98.2 4.4E-07 1.5E-11 75.9 3.1 32 144-176 71-102 (273)
66 1vk6_A NADH pyrophosphatase; 1 98.2 6E-07 2E-11 76.0 2.9 32 144-176 165-196 (269)
67 1x51_A A/G-specific adenine DN 98.1 7.1E-07 2.4E-11 66.5 1.2 31 144-175 50-82 (155)
68 3gz5_A MUTT/nudix family prote 98.1 1.3E-06 4.6E-11 71.8 2.9 33 144-176 52-85 (240)
69 3e57_A Uncharacterized protein 98.0 1.5E-06 5.2E-11 71.9 1.1 32 144-176 98-136 (211)
70 3fsp_A A/G-specific adenine gl 97.7 4.5E-05 1.5E-09 66.4 5.3 32 144-177 268-299 (369)
71 3bho_A Cleavage and polyadenyl 97.5 0.0002 6.8E-09 60.1 6.7 28 144-172 84-111 (208)
72 3dup_A MUTT/nudix family prote 97.4 5.2E-05 1.8E-09 65.7 1.9 32 144-176 150-182 (300)
73 3qsj_A Nudix hydrolase; struct 97.3 3.4E-05 1.1E-09 64.3 0.3 32 144-176 41-92 (232)
74 2dho_A Isopentenyl-diphosphate 97.3 7.3E-05 2.5E-09 61.6 1.7 32 144-176 88-129 (235)
75 3kvh_A Protein syndesmos; NUDT 97.2 6.3E-05 2.1E-09 63.5 0.8 29 144-173 55-84 (214)
76 2pny_A Isopentenyl-diphosphate 97.2 8.3E-05 2.8E-09 61.9 0.9 32 144-176 99-140 (246)
77 3rh7_A Hypothetical oxidoreduc 96.1 0.0021 7.1E-08 55.9 2.2 30 145-177 204-234 (321)
78 1vig_A Vigilin; RNA-binding pr 35.7 18 0.00061 24.1 1.8 17 162-178 25-41 (71)
79 2axy_A Poly(RC)-binding protei 33.6 22 0.00077 23.6 2.1 18 161-178 24-41 (73)
80 2dgr_A Ring finger and KH doma 32.9 20 0.00069 24.9 1.8 17 162-178 30-46 (83)
81 2opv_A KHSRP protein; KH domai 30.5 25 0.00086 24.0 1.9 31 144-178 17-50 (85)
82 2ctk_A Vigilin; K homology typ 28.4 26 0.0009 25.2 1.8 31 144-178 20-53 (104)
83 1x4m_A FAR upstream element bi 28.3 28 0.00097 24.2 1.9 31 144-178 18-51 (94)
84 1j5k_A Heterogeneous nuclear r 28.0 31 0.0011 23.8 2.1 31 144-178 17-50 (89)
85 1zzk_A Heterogeneous nuclear r 27.8 32 0.0011 23.3 2.1 34 144-178 10-43 (82)
86 1wvn_A Poly(RC)-binding protei 26.4 35 0.0012 23.0 2.1 31 144-178 9-42 (82)
87 1k1g_A SF1-BO isoform; splicin 26.2 17 0.0006 27.5 0.5 19 159-177 30-48 (131)
88 1uv7_A General secretion pathw 26.2 1.1E+02 0.0039 22.2 5.0 54 58-131 48-101 (110)
89 1dtj_A RNA-binding neurooncolo 26.1 34 0.0012 22.4 2.0 18 161-178 22-39 (76)
90 2hh3_A KH-type splicing regula 26.1 32 0.0011 24.9 2.0 32 143-178 13-47 (106)
91 2p2r_A Poly(RC)-binding protei 26.1 36 0.0012 22.5 2.1 18 161-178 24-41 (76)
92 2yqr_A KIAA0907 protein; struc 26.0 26 0.0009 26.3 1.5 20 159-178 36-55 (119)
93 1we8_A Tudor and KH domain con 25.7 34 0.0012 24.3 2.0 31 144-178 18-51 (104)
94 1uw4_A UPF3X; nonsense mediate 25.1 32 0.0011 24.6 1.8 17 63-79 8-24 (91)
95 2cte_A Vigilin; K homology typ 24.5 29 0.001 24.2 1.4 17 162-178 37-53 (94)
96 2hh2_A KH-type splicing regula 24.2 35 0.0012 24.4 1.8 35 143-178 9-43 (107)
97 3l9k_W Dynein intermediate cha 24.1 58 0.002 20.3 2.6 22 68-89 1-22 (38)
98 1ec6_A RNA-binding protein NOV 23.0 44 0.0015 22.7 2.1 18 161-178 22-39 (87)
99 2l08_A Regulator of nonsense t 22.7 30 0.001 25.4 1.2 16 63-78 16-31 (97)
100 1x4n_A FAR upstream element bi 22.6 41 0.0014 23.3 1.9 18 161-178 34-51 (92)
101 2ctm_A Vigilin; K homology typ 20.4 47 0.0016 23.4 1.8 18 161-178 36-53 (95)
No 1
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.26 E-value=6.4e-12 Score=100.93 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.6
Q ss_pred eeeecCC-----cEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 135 KVRVPTG-----RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 135 ~~R~p~g-----~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+||+|.+ .+.||+|||++|+ +|+|++||+|||+|||||.+.
T Consensus 77 q~R~~~~~~~~~~~~welPgG~ve~-gE~~~~aA~REl~EEtGl~~~ 122 (209)
T 1g0s_A 77 QIRIAAYDTSETPWLLEMVAGMIEE-GESVEDVARREAIEEAGLIVK 122 (209)
T ss_dssp EECGGGGGGSSCSEEEECEEEECCT-TCCHHHHHHHHHHHHHCCCCC
T ss_pred eecccCCCCCCCCeEEEeCcccCCC-CcCHHHHHHHHHHHHcCcccC
Confidence 5999986 5899999999998 899999999999999999874
No 2
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.26 E-value=9e-12 Score=98.37 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=53.1
Q ss_pred cccCCceeEEEEEEEEEEEeCceeeEEEEEEE-----------EEecCCCc-----eeeecC------CcEEEEeccccc
Q 030311 95 ILANGDMLLKQVLIQGVDMFGKRIGFLKFKAD-----------IFCKETGQ-----KVRVPT------GRVILELPAGML 152 (179)
Q Consensus 95 llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~ad-----------v~~~~~G~-----~~R~p~------g~~~lElPAG~l 152 (179)
++.++|+++++.+++..+..|.. ....++ +++..+|+ ++|+|. +...||+|||.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~---~~~~r~~~~~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~v 88 (191)
T 3o6z_A 12 ILSDNYFTLHNITYDLTRKDGEV---IRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLL 88 (191)
T ss_dssp EEECSSSEEEEEEEEEECTTSCE---EEEEEEEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEEC
T ss_pred EEecCcEEEEEEEEEEECCCCCE---EEEEEEEEecCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEe
Confidence 35678999998887433333332 112222 23322232 488887 788999999999
Q ss_pred CCCCCCHHHHHHHHHhhhhCceee
Q 030311 153 DDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 153 D~~~e~p~~aA~REL~EETG~~i~ 176 (179)
| +|++++||+||+.||||+.+.
T Consensus 89 e--gE~~~~aa~REl~EEtG~~~~ 110 (191)
T 3o6z_A 89 D--NDEPEVCIRKEAIEETGYEVG 110 (191)
T ss_dssp C--SSCHHHHHHHHHHHHC-CCCS
T ss_pred C--CCCHHHHHHHHHHHHhCCccC
Confidence 9 589999999999999999864
No 3
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.21 E-value=7.6e-11 Score=94.22 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=38.6
Q ss_pred ceeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 134 ~~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++||+|.+...||+|||.+|. +|++++||+|||+|||||.+.
T Consensus 83 ~q~R~~~~~~~welPgG~ve~-gEs~~~aA~REl~EEtGl~~~ 124 (212)
T 2dsc_A 83 KQFRPPMGGYCIEFPAGLIDD-GETPEAAALRELEEETGYKGD 124 (212)
T ss_dssp EEEEGGGTEEEEECCEEECCT-TCCHHHHHHHHHHHHHCCCCE
T ss_pred EeecCCCCCcEEECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence 358999988899999999998 899999999999999999875
No 4
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.16 E-value=7.8e-11 Score=93.85 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=37.7
Q ss_pred eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++|.+.+...||+|||.+|. +|++++||+|||.||||+.+.
T Consensus 67 q~r~~~~~~~welPgG~ve~-gEs~~~aA~REl~EEtGl~~~ 107 (198)
T 1vhz_A 67 EYAVGTESYELGFSKGLIDP-GESVYEAANRELKEEVGFGAN 107 (198)
T ss_dssp EEETTTTEEEEECEEEECCT-TCCHHHHHHHHHHHHHSEEEE
T ss_pred cccCCCCCcEEEeCcccCCC-CcCHHHHHHHHHHHHHCCCcC
Confidence 48888888899999999998 899999999999999999875
No 5
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.05 E-value=1.1e-10 Score=87.20 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=36.7
Q ss_pred eeeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 135 KVRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 135 ~~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++|.+.+...|++|+|.+|. +|++++||+||++||||+.+.
T Consensus 24 ~~r~~~~~~~w~~PgG~ve~-gEt~~~aa~REl~EEtGl~~~ 64 (145)
T 2w4e_A 24 QFRYPLRATITEIVAGGVEK-GEDLGAAAARELLEEVGGAAS 64 (145)
T ss_dssp EEETTTTEEEEECEEEECCT-TCCHHHHHHHHHHHHHCEECS
T ss_pred EEecCCCCCEEEeCCccCCC-CCCHHHHHHHHHHHhhCCccC
Confidence 46777777789999999998 899999999999999999874
No 6
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=98.98 E-value=1e-09 Score=87.35 Aligned_cols=41 Identities=37% Similarity=0.339 Sum_probs=37.5
Q ss_pred eeeecCCcEEEEecccccC-CCCCCHHHHHHHHHhhhhCceee
Q 030311 135 KVRVPTGRVILELPAGMLD-DDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 135 ~~R~p~g~~~lElPAG~lD-~~~e~p~~aA~REL~EETG~~i~ 176 (179)
++|.+.+...|++|+|.+| . +|++++||+||+.||||+.+.
T Consensus 62 r~r~~~~~~~w~lPgG~ve~~-gEs~~~aa~REl~EEtGl~~~ 103 (207)
T 1mk1_A 62 QYRHTYGRRLWELPAGLLDVA-GEPPHLTAARELREEVGLQAS 103 (207)
T ss_dssp EEETTTTEEEEECCEEECCST-TCCHHHHHHHHHHHHHCEEEE
T ss_pred eecCCCCCcEEEeCCccccCC-CCCHHHHHHHHHHHHHCCccc
Confidence 3788888889999999999 8 899999999999999999875
No 7
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=98.96 E-value=1.9e-10 Score=94.59 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=31.3
Q ss_pred cEEEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.++||+|||++|..+|++++||+|||+||||+.+
T Consensus 94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~ 127 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHL 127 (218)
T ss_dssp CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCC
T ss_pred CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCcc
Confidence 5799999999995378999999999999999987
No 8
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=98.91 E-value=3.3e-09 Score=81.49 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=35.5
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|.+.+...|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 61 ~~~~~~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~ 100 (182)
T 2yvp_A 61 YRHPTGKFLLEVPAGKVDE-GETPEAAARRELREEVGAEAE 100 (182)
T ss_dssp EEGGGTEEEEECCEEECCT-TCCHHHHHHHHHHHHHCEECS
T ss_pred ccCCCCCcEEEeccccCCC-CcCHHHHHHHHHHHHhCCCcc
Confidence 5666666789999999998 899999999999999999864
No 9
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=98.82 E-value=3.3e-09 Score=80.86 Aligned_cols=39 Identities=31% Similarity=0.333 Sum_probs=34.1
Q ss_pred eeecCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 136 VRVPTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 136 ~R~p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
+|.+.+...|++|+|.+|. +|++++||+||+.||||+ +.
T Consensus 53 ~r~~~~~~~w~lPgG~ve~-gEs~~~aa~REl~EEtGl-~~ 91 (170)
T 1v8y_A 53 MRPAVGLAPLEIPAGLIEP-GEDPLEAARRELAEQTGL-SG 91 (170)
T ss_dssp CBTTTTBCCBBCSEEECCT-TCCHHHHHHHHHHHHHSE-EE
T ss_pred EeCCCCCCEEECCccccCC-CCCHHHHHHHHHHHHHCC-Cc
Confidence 5666666678999999998 899999999999999999 54
No 10
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=98.82 E-value=6.4e-09 Score=77.00 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=33.1
Q ss_pred cCCcEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 139 PTGRVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 139 p~g~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
+.+...|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 25 ~~~~~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 62 (153)
T 3shd_A 25 INGKALWNQPAGHLEA-DETLVEAAARELWEETGISAQP 62 (153)
T ss_dssp ETTEEEEECSEEECCT-TCCHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCEECCeEEeCC-CCCHHHHHHHHHHHHHCccccc
Confidence 3345578999999998 8999999999999999998753
No 11
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=98.79 E-value=4.4e-09 Score=79.05 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=29.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. ||++.+||+||+.||||+.+.
T Consensus 37 ~W~lPgG~ve~-gEt~~~aa~REl~EEtGl~~~ 68 (155)
T 3u53_A 37 HWTPPKGHVEP-GEDDLETALRETQEEAGIEAG 68 (155)
T ss_dssp CEECSEEECCS-SCCHHHHHHHHHHHHHCCCGG
T ss_pred CEECCeeeccC-CCCHHHHHHHHHHHHHCCccc
Confidence 46999999998 899999999999999999864
No 12
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=98.77 E-value=1.2e-08 Score=76.30 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=29.8
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 27 W~~PgG~ve~-gEt~~~aa~RE~~EEtGl~~~~ 58 (134)
T 3i7u_A 27 WSFPKGNIEP-GEKPEETAVREVWEETGVKGEI 58 (134)
T ss_dssp EECCEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred EECCeeEecC-CCCHHHHHHHHHHHhcCceEEE
Confidence 6999999998 8999999999999999998864
No 13
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=98.74 E-value=1.7e-08 Score=74.30 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=31.5
Q ss_pred cEEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 142 RVILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 142 ~~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
...|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 32 ~~~w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~~ 66 (153)
T 2b0v_A 32 AIKLNQPAGHLEP-GESIIQACSREVLEETGHSFLP 66 (153)
T ss_dssp CCEEECSEEECCT-TSCHHHHHHHHHHHHHSEEEEE
T ss_pred CCeEECCCcCcCC-CCCHHHHHHHHHHHhhCcEecc
Confidence 4478999999998 8999999999999999998763
No 14
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=98.73 E-value=5.4e-09 Score=78.47 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 29 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 61 (159)
T 3f6a_A 29 KMLPLGGHIEV-NELPEEACIREAKEEAGLNVTL 61 (159)
T ss_dssp CEECEEEECCT-TCCHHHHHHHHHHHHHCCCCEE
T ss_pred eEECCccCccC-CCCHHHHHHHHHHHHhCCCcee
Confidence 45999999998 8999999999999999998864
No 15
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=98.71 E-value=1.7e-08 Score=75.63 Aligned_cols=33 Identities=27% Similarity=0.172 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 44 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 76 (153)
T 3eds_A 44 YWSLPAGAIEL-GETPEEAVVREVWEETGLKVQV 76 (153)
T ss_dssp CBBCSEEECCT-TSCHHHHHHHHHHHHHCEEEEE
T ss_pred cEECCccccCC-CCCHHHHHHHHHHHHHCcccee
Confidence 56999999998 8999999999999999998863
No 16
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=98.71 E-value=5.5e-09 Score=77.23 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=30.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 32 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~~ 64 (149)
T 3son_A 32 VWQFVAGGGED-EEAISETAKRESIEELNLDVDV 64 (149)
T ss_dssp CEECEEEECCT-TCCHHHHHHHHHHHHHTCCSCC
T ss_pred CEeCCccccCC-CCCHHHHHHHHHHHHhCCCccc
Confidence 45999999998 8999999999999999998764
No 17
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=98.69 E-value=2.3e-08 Score=75.61 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus 46 ~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 79 (171)
T 3id9_A 46 RDWSLPGGRVEN-GETLEEAMIREMREETGLEVKI 79 (171)
T ss_dssp CCEECCEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred CeEECCCccCCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 356999999998 8999999999999999998753
No 18
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=98.68 E-value=9.8e-09 Score=76.42 Aligned_cols=34 Identities=26% Similarity=0.129 Sum_probs=30.8
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 46 ~~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~~ 79 (156)
T 3gg6_A 46 GSWYLPAGRMEP-GETIVEALQREVKEEAGLHCEP 79 (156)
T ss_dssp TCEECSEEECCT-TCCHHHHHHHHHHHHHCEEEEE
T ss_pred CEEECCeeeccC-CCCHHHHHHHHHHHhhCceeEe
Confidence 357999999998 8999999999999999998864
No 19
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=98.67 E-value=1e-08 Score=74.91 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=29.9
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus 39 w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~ 70 (139)
T 2yyh_A 39 LALPGGFVEV-GERVEEAAAREMREETGLEVRL 70 (139)
T ss_dssp EECCEEECCT-TCCHHHHHHHHHHHHHCCCCEE
T ss_pred EECccccCCC-CCCHHHHHHHHHHHHHCCCccc
Confidence 7999999998 8999999999999999998763
No 20
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=98.66 E-value=1.3e-08 Score=73.12 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 26 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~ 58 (134)
T 2pbt_A 26 VWSFPKGNIEP-GEKPEETAVREVWEETGVKGEI 58 (134)
T ss_dssp CEECCEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred cEECCccccCC-CCCHHHHHHHHHHHHHCCccEE
Confidence 45999999998 8999999999999999998763
No 21
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=98.66 E-value=1.2e-08 Score=75.48 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 39 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~ 70 (165)
T 1f3y_A 39 AWQMPQGGIDE-GEDPRNAAIRELREETGVTSA 70 (165)
T ss_dssp EEECCEEECCT-TCCHHHHHHHHHHHHHCCCSE
T ss_pred cEECCeeccCC-CCCHHHHHHHHHHHhhCCChh
Confidence 67999999998 899999999999999999863
No 22
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=98.66 E-value=1.2e-08 Score=76.82 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=29.9
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 56 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~ 87 (165)
T 3oga_A 56 QWALSGGGVEP-GERIEEALRREIREELGEQLI 87 (165)
T ss_dssp CEECCCEECCT-TCCHHHHHHHHHHHHHCSSCC
T ss_pred eEECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence 57999999998 899999999999999999875
No 23
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=98.65 E-value=3.9e-08 Score=77.11 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=29.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCce-ee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD-FL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~-i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+. +.
T Consensus 70 ~w~lPgG~ve~-gEs~~eaa~REl~EEtGl~~~~ 102 (197)
T 3fcm_A 70 SWAWTGGHSDN-EKDQLKVAIKELKEETGVKNPT 102 (197)
T ss_dssp EEECEEEECTT-CCBHHHHHHHHHHHHHCCSSCE
T ss_pred CEECCccccCC-CCCHHHHHHHHHHHHHCCCccc
Confidence 67999999997 8999999999999999998 54
No 24
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=98.65 E-value=3.2e-08 Score=71.92 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=29.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 35 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~ 66 (150)
T 2o1c_A 35 FWQSVTGSVEE-GETAPQAAMREVKEEVTIDVV 66 (150)
T ss_dssp CEESEEEECCT-TCCHHHHHHHHHHHHHCCCHH
T ss_pred ceECCccccCC-CCCHHHHHHHHHHHHhCCCcc
Confidence 56999999998 899999999999999999875
No 25
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=98.63 E-value=2e-08 Score=71.66 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=30.1
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 25 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~ 57 (126)
T 1vcd_A 25 FWVFPKGHPEP-GESLEEAAVREVWEETGVRAEV 57 (126)
T ss_dssp CEECCEECCCT-TCCHHHHHHHHHHHHHCCEEEE
T ss_pred CccCCcCcCCC-CCCHHHHHHHHHHHhhCcEeee
Confidence 36999999998 8999999999999999998863
No 26
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=98.62 E-value=2.1e-08 Score=72.55 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=28.1
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCce
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLD 174 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~ 174 (179)
.|++|+|.+|. +|++++||+||+.||||+.
T Consensus 31 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~ 60 (138)
T 1ktg_A 31 HWTPPKGHVDP-GEDEWQAAIRETKEEANIT 60 (138)
T ss_dssp CEESSEEECCT-TCCHHHHHHHHHHHHHCCC
T ss_pred cEeCCccccCC-CCCHHHHHHHHHHHHHCCC
Confidence 57999999998 8999999999999999993
No 27
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=98.61 E-value=2.2e-08 Score=73.49 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 35 ~w~lPgG~ve~-gE~~~~aa~REl~EE~Gl~~~~ 67 (140)
T 3gwy_A 35 RYEFPGGKVEE-GESLQEALQREIMEEMDYVIEV 67 (140)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred eEECCCccCCC-CCCHHHHHHHHHHHhhCcEEEe
Confidence 57999999998 8999999999999999998764
No 28
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=98.61 E-value=2.2e-08 Score=73.07 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=30.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 42 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~ 74 (148)
T 2azw_A 42 AYFLPGGEIEG-TETKEEAIHREVLEELGISVEI 74 (148)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred CEeCCCcccCC-CCCHHHHHHHHHHHHhCCeeEe
Confidence 45899999998 8999999999999999998753
No 29
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=98.60 E-value=2.4e-08 Score=74.13 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=30.1
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 40 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~~ 72 (154)
T 2pqv_A 40 KYYTIGGAIQV-NESTEDAVVREVKEELGVKAQA 72 (154)
T ss_dssp EEECEEEECBT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred eEECcccCcCC-CCCHHHHHHHHHHHHhCCeeee
Confidence 46899999998 8999999999999999998763
No 30
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=98.60 E-value=2.2e-08 Score=75.24 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+++..
T Consensus 24 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 56 (156)
T 1k2e_A 24 VYIYPGGHVEH-NETPIEAVKREFEEETGIVVEP 56 (156)
T ss_dssp SEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred cEECCeeecCC-CCCHHHHHHHHHHHHHCCccee
Confidence 36899999998 8999999999999999999864
No 31
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=98.60 E-value=3.7e-08 Score=77.51 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.+
T Consensus 53 ~w~lPGG~ve~-gEs~~~aA~REl~EEtGl~~~~ 85 (199)
T 3h95_A 53 MWKFPGGLSEP-EEDIGDTAVREVFEETGIKSEF 85 (199)
T ss_dssp SBBCCEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred CEECCccccCC-CCCHHHHHHHHHHHHhCCcccc
Confidence 46999999998 8999999999999999998764
No 32
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=98.60 E-value=2.2e-08 Score=79.73 Aligned_cols=33 Identities=24% Similarity=0.131 Sum_probs=30.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||+||+.||||+++..
T Consensus 67 ~W~lPgG~ve~-gEt~~eaa~REl~EEtGl~~~~ 99 (194)
T 2fvv_A 67 RWIVPGGGMEP-EEEPSVAAVREVCEEAGVKGTL 99 (194)
T ss_dssp SEECSEEECCT-TCCHHHHHHHHHHHHHCEEEEE
T ss_pred cEECCCCcCCC-CcCHHHHHHHHHHHHhCCcccc
Confidence 46999999998 8999999999999999998763
No 33
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=98.60 E-value=2.4e-08 Score=73.88 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=30.3
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 43 ~~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~ 75 (159)
T 1sjy_A 43 GLWHIPSGAVED-GENPQDAAVREACEETGLRVR 75 (159)
T ss_dssp CCEECSEEECCT-TSCHHHHHHHHHHHHHSCCEE
T ss_pred CeEECCccccCC-CCCHHHHHHHHHHHHHCccce
Confidence 357999999998 899999999999999999875
No 34
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=98.59 E-value=2.5e-08 Score=75.23 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=30.9
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
..|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 54 ~~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 87 (157)
T 4dyw_A 54 GCWGLPGGKVDW-LEPVERAVCREIEEELGIALER 87 (157)
T ss_dssp TCEECCEEECCT-TCCHHHHHHHHHHHHHSCEEES
T ss_pred CEEECCcccCCC-CCCHHHHHHHHHHHHHCccccc
Confidence 467999999998 8999999999999999998853
No 35
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=98.58 E-value=7.9e-08 Score=70.00 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.++. +|++.+||+||+.||||+.+..
T Consensus 36 ~w~lPgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~ 68 (144)
T 3r03_A 36 LWEFPGGKLEP-GETPEAALVRELAEELGVDTRA 68 (144)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHCCBCCG
T ss_pred cEECCCcEecC-CCCHHHHHHHHHHHHhCceeec
Confidence 57999999998 8999999999999999998754
No 36
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.7e-08 Score=74.15 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=29.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 29 ~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~~ 60 (146)
T 2jvb_A 29 SWSFPRGKISK-DENDIDCCIREVKEEIGFDLT 60 (146)
T ss_dssp CCBCCEECCCS-SSCHHHHHHHHHHHHTSCCCS
T ss_pred cEECCcccCCC-CCCHHHHHHHHHHHHHCCCch
Confidence 46999999998 899999999999999999875
No 37
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=98.57 E-value=2.3e-08 Score=77.65 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=30.1
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
..|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 67 g~w~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~ 99 (187)
T 3i9x_A 67 GKWAVPGGFVDE-NESAEQAAERELEEETSLTDI 99 (187)
T ss_dssp TCEECSEEECCT-TSCHHHHHHHHHHHHHCCCSC
T ss_pred CEEECCceeCCC-CCCHHHHHHHHHHHHHCCCCc
Confidence 357999999998 899999999999999999864
No 38
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=98.57 E-value=3.5e-08 Score=73.10 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=29.3
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 38 w~lPgG~ve~-gE~~~~aa~RE~~EEtGl~~~ 68 (155)
T 2b06_A 38 YAFPGGHVEN-DEAFAESVIREIYEETGLTIQ 68 (155)
T ss_dssp EECCCCBCCT-TSCHHHHHHHHHHHHHSEEEE
T ss_pred EeccceecCC-CCCHHHHHHHHHHHHhCcccc
Confidence 6999999998 899999999999999999876
No 39
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=98.57 E-value=2.7e-08 Score=74.00 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=30.7
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
-.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 36 g~w~~PgG~ve~-gE~~~~aa~REl~EE~Gl~~~~ 69 (153)
T 3grn_A 36 GKWDLPGGKVNP-DESLKEGVAREVWEETGITMVP 69 (153)
T ss_dssp TCEECSEEECCT-TCCHHHHHHHHHHHHHCCCCCC
T ss_pred CeEECceeecCC-CCCHHHHHHhhhhhhhCcEeec
Confidence 357999999998 8999999999999999998763
No 40
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=98.56 E-value=2.8e-08 Score=75.29 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=29.3
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 39 w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~ 69 (161)
T 3exq_A 39 HSFPGGHVEV-GEPCATAAIREVFEETGLRLS 69 (161)
T ss_dssp BBCCCCBCCT-TSCHHHHHHHHHHHHHCCEES
T ss_pred EEccceecCC-CCCHHHHHHHHHHHhhCcEec
Confidence 6999999998 899999999999999999875
No 41
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=98.54 E-value=6.9e-08 Score=74.78 Aligned_cols=32 Identities=16% Similarity=-0.053 Sum_probs=29.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 51 ~W~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~ 82 (176)
T 3q93_A 51 RWNGFGGKVQE-GETIEDGARRELQEESGLTVD 82 (176)
T ss_dssp SEECEEEECCT-TSCHHHHHHHHHHHHHSCEES
T ss_pred eEECceecCCC-CCCHHHHHHHHHHHHHCCcce
Confidence 46999999998 899999999999999999875
No 42
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=98.53 E-value=4.4e-08 Score=76.54 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||+||+.||||+.+..
T Consensus 66 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 98 (189)
T 3cng_A 66 KWTLPAGFMEN-NETLVQGAARETLEEANARVEI 98 (189)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHCCCEEE
T ss_pred eEECceeeccC-CCCHHHHHHHHHHHHHCCcccc
Confidence 47999999998 8999999999999999998764
No 43
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=98.52 E-value=4.7e-08 Score=77.77 Aligned_cols=33 Identities=21% Similarity=0.001 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 91 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~v~~ 123 (205)
T 3q1p_A 91 KWALPGGWADV-GYTPTEVAAKEVFEETGYEVDH 123 (205)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHSEEEEE
T ss_pred cEECCcCccCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 56999999998 8999999999999999999864
No 44
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.52 E-value=3.5e-08 Score=80.72 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=30.0
Q ss_pred EEEecccccCCCCC-CHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKG-DFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +| ++++||+||++||||+.+.
T Consensus 76 ~w~lPGG~ve~-gE~t~~eaa~REl~EEtGl~~~ 108 (217)
T 2xsq_A 76 RLGFPGGFVDT-QDRSLEDGLNRELREELGEAAA 108 (217)
T ss_dssp CEECSEEECCT-TCSSHHHHHHHHHHHHHCGGGG
T ss_pred eEECCceecCC-CCCCHHHHHHHHHHHHHCCCCc
Confidence 57999999998 89 9999999999999999876
No 45
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=98.51 E-value=4e-08 Score=76.13 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=29.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 38 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~ 69 (163)
T 3f13_A 38 RYNLPGGKANR-GELRSQALIREIREETGLRIN 69 (163)
T ss_dssp -BBCSEEECCT-TCCHHHHHHHHHHHHHCCCCC
T ss_pred eEECCceeCCC-CCCHHHHHHHHHHHHHCcccc
Confidence 56999999998 899999999999999999875
No 46
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=98.50 E-value=5e-08 Score=72.24 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=29.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 45 ~w~~PgG~ve~-gE~~~~aa~REl~EEtGl~~~ 76 (160)
T 1rya_A 45 YWFVPGGRVQK-DETLEAAFERLTMAELGLRLP 76 (160)
T ss_dssp SEECCEEECCT-TCCHHHHHHHHHHHHHSSCCC
T ss_pred EEECCccccCC-CCCHHHHHHHHHHHHHCCCCC
Confidence 46999999998 899999999999999999863
No 47
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=98.50 E-value=4.4e-08 Score=76.06 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=29.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 65 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~ 96 (194)
T 1nqz_A 65 QIAFPGGSLDA-GETPTQAALREAQEEVALDPA 96 (194)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred eEECCcccCCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 46999999998 899999999999999999764
No 48
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=98.49 E-value=1.4e-07 Score=70.45 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 57 ~w~~PgG~ve~-gE~~~~aa~RE~~EEtGl~~~~ 89 (158)
T 3hhj_A 57 LWEFPGGKVEQ-GETPEASLIRELEEELGVHVQA 89 (158)
T ss_dssp CCBCCEEECCT-TCCHHHHHHHHHHHHHCCBCCG
T ss_pred EEECCceeecC-CCCHHHHHHHHHHHHhCcEeec
Confidence 67999999998 8999999999999999998754
No 49
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=98.49 E-value=6.9e-08 Score=70.56 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.3
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||.||+.||||+.+..
T Consensus 49 ~w~~PgG~ve~-gE~~~~aa~RE~~EE~Gl~~~~ 81 (153)
T 3ees_A 49 QWEFPGGKIEN-GETPEEALARELNEELGIEAEV 81 (153)
T ss_dssp CEECSEEECCT-TCCHHHHHHHHHHHHHSCEEEC
T ss_pred eEECCceeeCC-CCCHHHHHHHHHHHHHCCcccc
Confidence 67999999998 8999999999999999998764
No 50
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=98.48 E-value=6.9e-08 Score=73.58 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEe-cccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++ |+|.+|. +|++.+||+||+.||||+.+
T Consensus 66 ~w~l~pGG~ve~-gE~~~~aa~REl~EEtGl~~ 97 (180)
T 2fkb_A 66 MLDATAGGVVQA-DEQLLESARREAEEELGIAG 97 (180)
T ss_dssp CEESSBCCBCBT-TCCHHHHHHHHHHHHHCCBS
T ss_pred cEEeecCCCCCC-CCCHHHHHHHHHHHHHCCCc
Confidence 5799 9999998 89999999999999999975
No 51
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=98.48 E-value=7.2e-08 Score=69.71 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=29.9
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++++||.||+.||||+.+.
T Consensus 36 ~w~lPgG~ve~-gE~~~~aa~RE~~EE~Gl~~~ 67 (140)
T 2rrk_A 36 LWEFAGGKVEP-DESQRQALVRELREELGIEAT 67 (140)
T ss_dssp CEECCEEECCT-TSCHHHHHHHHHHHHSCEEEE
T ss_pred EEECCceecCC-CCCHHHHHHHHHHHHHCCeee
Confidence 67999999998 899999999999999999875
No 52
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=98.46 E-value=5.1e-08 Score=69.39 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=30.0
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
-.|++|+|.+|. +|++.+||.||+.||||+.+.
T Consensus 31 g~w~~PgG~~e~-gE~~~~aa~RE~~EE~G~~~~ 63 (129)
T 1mut_A 31 NKLEFPGGKIEM-GETPEQAVVRELQEEVGITPQ 63 (129)
T ss_dssp CCEECCCCCSSS-CSSTTHHHHHHHHTTTCCSSC
T ss_pred CeEECCccCcCC-CCCHHHHHHHHHHHHhCCccc
Confidence 357999999998 899999999999999999865
No 53
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=98.46 E-value=7.5e-08 Score=74.71 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=29.7
Q ss_pred EEEe-cccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILEL-PAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++ |+|.+|. +|++++||+||+.||||+.+.
T Consensus 61 ~w~~~PgG~ve~-gEt~~~aa~REl~EEtGl~~~ 93 (190)
T 1hzt_A 61 VWTNSVCGHPQL-GESNEDAVIRRCRYELGVEIT 93 (190)
T ss_dssp CEEESEEECCCT-TCCHHHHHHHHHHHHHCCCBS
T ss_pred cccCcccccCCC-CCCHHHHHHHHHHHHHCCCch
Confidence 5799 9999998 899999999999999999875
No 54
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=98.45 E-value=9.2e-08 Score=76.13 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++.+||+||+.||||+.+..
T Consensus 92 ~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~~~ 124 (206)
T 3o8s_A 92 LWSLPGGWCDV-DQSVKDNVVKEVKEEAGLDVEA 124 (206)
T ss_dssp CEECSEEECCT-TSCHHHHHHHHHHHHHCEEEEE
T ss_pred eEECCeeccCC-CCCHHHHHHHHHHHHHCCccee
Confidence 46999999998 8999999999999999998753
No 55
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=98.44 E-value=8.8e-08 Score=75.26 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.
T Consensus 27 ~W~lPGG~ve~-gEs~~~aa~REl~EEtGl~~~ 58 (188)
T 3fk9_A 27 WWVAPGGKMEA-GESILETVKREYWEETGITVK 58 (188)
T ss_dssp CEECCEEECCT-TCCHHHHHHHHHHHHHSCEES
T ss_pred eEECCeecccC-CCCHHHHHHHHHHHHHCCCCC
Confidence 46999999998 899999999999999999875
No 56
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=98.43 E-value=6.4e-08 Score=81.54 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=29.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. ||++++||+||+.||||+.+.
T Consensus 127 ~W~lPgG~ve~-gEs~~eAA~REl~EEtGl~~~ 158 (271)
T 2a6t_A 127 GWGFPKGKIDK-DESDVDCAIREVYEETGFDCS 158 (271)
T ss_dssp CCBCSEEECCT-TCCHHHHHHHHHHHHHCCCCT
T ss_pred eEECCcccCCC-CcCHHHHHHHHHHHHhCCCce
Confidence 36999999998 899999999999999999875
No 57
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=98.42 E-value=9.8e-08 Score=73.14 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=29.5
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.++. +|++.+||+||+.||||+.+.
T Consensus 32 ~w~~p~G~~e~-gE~~~~aa~RE~~EE~G~~~~ 63 (164)
T 2kdv_A 32 SWQFPQGGINP-GESAEQAMYRELFEEVGLSRK 63 (164)
T ss_dssp CEECCEEECCT-TCCHHHHHHHHHHHHHCCCGG
T ss_pred eEECCeeecCC-CCCHHHHHHHHHHHHHCCCcc
Confidence 46999999998 899999999999999999864
No 58
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=98.39 E-value=1.1e-07 Score=76.55 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.7
Q ss_pred EEEecccccCCCCC-CHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKG-DFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +| ++++||+||++||||+.+.
T Consensus 67 ~w~~PGG~ve~-gE~t~~~aa~REl~EEtGl~~~ 99 (212)
T 1u20_A 67 RLGFPGGFVDT-RDISLEEGLKRELEEELGPALA 99 (212)
T ss_dssp CEECSEEEECT-TTSCHHHHHHHHHHHHHCGGGG
T ss_pred eEECCCcccCC-CCCCHHHHHHHHHHHHHCCCcc
Confidence 56999999998 89 9999999999999999875
No 59
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.38 E-value=1.7e-07 Score=80.54 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=30.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
.|++|+|.+|. +|++++||+||+.||||+.+.+
T Consensus 50 ~W~lPgG~ve~-gEs~~~AA~REl~EEtGl~~~~ 82 (364)
T 3fjy_A 50 DWSWPKGKLEQ-NETHRHAAVREIGEETGSPVKL 82 (364)
T ss_dssp EEECCEEECCT-TCCHHHHHHHHHHHHHSCCEEE
T ss_pred CEECCcCCCCC-CCCHHHHHHHHHHHHhCCeeee
Confidence 56999999998 8999999999999999998864
No 60
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=98.38 E-value=1.3e-07 Score=76.99 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=29.6
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+|||.||||+.+.
T Consensus 43 ~w~lPGG~ve~-gEs~~~Aa~REl~EEtGl~~~ 74 (226)
T 2fb1_A 43 EWSLMGGFVQK-DESVDDAAKRVLAELTGLENV 74 (226)
T ss_dssp CEECEEEECCT-TSCHHHHHHHHHHHHHCCCSC
T ss_pred CEECCeeccCC-CCCHHHHHHHHHHHHHCCCCC
Confidence 46999999998 899999999999999999875
No 61
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=98.37 E-value=8.6e-08 Score=72.46 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=29.7
Q ss_pred EEE-ecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILE-LPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lE-lPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|+ +|+|.+|. +|++.+||+||+.||||+.+.
T Consensus 63 ~w~~~PgG~ve~-gEs~~~aa~REl~EEtGl~~~ 95 (171)
T 1q27_A 63 ALDVSVGGAVQS-GETYEEAFRREAREELNVEID 95 (171)
T ss_dssp SCCCSEEEECSS-SSCHHHHHHHHHHHHHSCTTS
T ss_pred ccccccCccccC-CCCHHHHHHHHHHHHHCCccc
Confidence 579 99999998 899999999999999999865
No 62
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=98.35 E-value=1.7e-07 Score=78.03 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+++.
T Consensus 229 ~w~lPgG~ve~-gE~~~~aa~REl~EEtGl~~~ 260 (341)
T 2qjo_A 229 LIALPGGFIKQ-NETLVEGMLRELKEETRLKVP 260 (341)
T ss_dssp CEECSEEECCT-TSCHHHHHHHHHHHHHCCSSC
T ss_pred eEECCCCcCCC-CCCHHHHHHHHHhhhhCCccc
Confidence 46999999998 899999999999999999875
No 63
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=98.33 E-value=2e-07 Score=78.40 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=29.9
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+||+.||||+++.
T Consensus 234 ~w~lPgG~ve~-gEt~~~aa~REl~EEtGl~v~ 265 (352)
T 2qjt_B 234 LWALPGGFLEC-DETIAQAIIRELFEETNINLT 265 (352)
T ss_dssp CEECSEEECCT-TSCHHHHHHHHHHHHHCCSCC
T ss_pred eEECCCCcCCC-CCCHHHHHHHHHHHhhCCCcc
Confidence 56999999998 899999999999999999875
No 64
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=98.32 E-value=2.3e-07 Score=78.92 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=28.7
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCcee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i 175 (179)
.|++|+|++|. +|++.+||+|||.||||+.+
T Consensus 151 ~W~lPGG~Ve~-GEs~~eAA~REl~EETGl~~ 181 (292)
T 1q33_A 151 EWAIPGGMVDP-GEKISATLKREFGEEALNSL 181 (292)
T ss_dssp SEECCCEECCT-TCCHHHHHHHHHHHHHSCGG
T ss_pred cEeCCCcccCC-CCCHHHHHHHHHHHHhCCcc
Confidence 46999999998 89999999999999999984
No 65
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=98.24 E-value=4.4e-07 Score=75.94 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=29.2
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. +|++++||+|||.||||+.+.
T Consensus 71 ~W~lPGG~ve~-gEs~~~AA~REl~EEtGl~v~ 102 (273)
T 2fml_A 71 SWALPGGFVNR-NESTEDSVLRETKEETGVVIS 102 (273)
T ss_dssp CEECCEEECCT-TSCHHHHHHHHHHHHHCCCCC
T ss_pred cEECCccCCCC-CcCHHHHHHHHHHHHHCCCCC
Confidence 46999999998 899999999999999998754
No 66
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=98.19 E-value=6e-07 Score=76.01 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|||.+|. +|++++||+||+.||||+++.
T Consensus 165 ~w~lPgG~vE~-GEt~eeAa~REv~EEtGl~v~ 196 (269)
T 1vk6_A 165 VHTVLAGFVEV-GETLEQAVAREVMEESGIKVK 196 (269)
T ss_dssp CCBCEEEECCT-TCCHHHHHHHHHHHHHCCEEE
T ss_pred cEECCcCcCCC-CCCHHHHHHHHHHHHhCceee
Confidence 46999999998 899999999999999999875
No 67
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=98.09 E-value=7.1e-07 Score=66.55 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=28.0
Q ss_pred EEEecccccCCCCCCHH-HHHHHHHhhhhC-cee
Q 030311 144 ILELPAGMLDDDKGDFV-GTAVREVSFILL-LDF 175 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~-~aA~REL~EETG-~~i 175 (179)
+|++|+|.++. +|++. +||.||+.|||| +.+
T Consensus 50 ~w~~PgG~~e~-gE~~~~~a~~REl~EE~g~l~~ 82 (155)
T 1x51_A 50 LWEFPSVTWEP-SEQLQRKALLQELQRWAGPLPA 82 (155)
T ss_dssp CEECCEEECCS-SHHHHHHHHHHHHHHHSCCCCS
T ss_pred eecCCccccCC-CCCHHHHHHHHHHHHHhCCcce
Confidence 68999999998 88996 999999999999 654
No 68
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=98.08 E-value=1.3e-06 Score=71.76 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred EEEecccccCC-CCCCHHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDD-DKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~-~~e~p~~aA~REL~EETG~~i~ 176 (179)
.|++|+|.+|. .+|++++||+|||.||||+.+.
T Consensus 52 ~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~ 85 (240)
T 3gz5_A 52 LWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPP 85 (240)
T ss_dssp CEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCS
T ss_pred CEECCccccCCCCCcCHHHHHHHHHHHHHCCCCC
Confidence 36999999994 2689999999999999999864
No 69
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=97.96 E-value=1.5e-06 Score=71.94 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=28.2
Q ss_pred EEEe-cccccCCCCCC--H----HHHHHHHHhhhhCceee
Q 030311 144 ILEL-PAGMLDDDKGD--F----VGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lEl-PAG~lD~~~e~--p----~~aA~REL~EETG~~i~ 176 (179)
.|++ |+|.++. +|+ | ++||+||+.||||+.+.
T Consensus 98 ~w~~gPGGhVE~-GEs~~p~EtleeAa~REl~EEtGl~v~ 136 (211)
T 3e57_A 98 LYSLGIGGHVRE-GDGATPREAFLKGLEREVNEEVDVSLR 136 (211)
T ss_dssp -CBSSEECCCBG-GGCSSHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CcccccceEEeC-CCCCCchhhHHHHHHHHHHHHhCCeee
Confidence 4688 9999998 787 5 99999999999999875
No 70
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=97.66 E-value=4.5e-05 Score=66.42 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=29.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeee
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~ 177 (179)
+||+|+|.+|. + ++++++.||+.||||+.+..
T Consensus 268 lWefPGG~ve~-g-t~~~al~REl~EE~Gl~v~~ 299 (369)
T 3fsp_A 268 LWEFPSCETDG-A-DGKEKLEQMVGEQYGLQVEL 299 (369)
T ss_dssp CEECCEEECSS-S-CTHHHHHHHHTTSSSCCEEE
T ss_pred cccCCCcccCC-C-CcHHHHHHHHHHHhCCceee
Confidence 67999999998 7 99999999999999998764
No 71
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=97.48 E-value=0.0002 Score=60.08 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=27.0
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhC
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILL 172 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG 172 (179)
.|++|+|.+++ +|++++|.+|||.||.|
T Consensus 84 ~f~LPGGkle~-gE~~~eaL~REL~EELg 111 (208)
T 3bho_A 84 FFKLPGGELNP-GEDEVEGLKRLMTEILG 111 (208)
T ss_dssp EEECSEEECCT-TCCHHHHHHHHHHHHHC
T ss_pred cEECCCcccCC-CCCHHHHHHHHHHHHhC
Confidence 67999999998 89999999999999999
No 72
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=97.37 E-value=5.2e-05 Score=65.72 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=28.9
Q ss_pred EE-EecccccCCCCCCHHHHHHHHHhhhhCceee
Q 030311 144 IL-ELPAGMLDDDKGDFVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~l-ElPAG~lD~~~e~p~~aA~REL~EETG~~i~ 176 (179)
.| ..|||.++. ||++.+||+||++||+|+.++
T Consensus 150 ~wd~svaG~i~~-GEs~~eaA~REl~EElGI~~~ 182 (300)
T 3dup_A 150 KLDNMVAGGQPA-DLSLRQNLIKECAEEADLPEA 182 (300)
T ss_dssp CEEESEEEECCT-TSCHHHHHHHHHHHHHCCCHH
T ss_pred ccccccccCCCC-CCCHHHHHHHHHHHHhCCChh
Confidence 45 699999998 899999999999999999764
No 73
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=97.34 E-value=3.4e-05 Score=64.27 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred EEEecccccCCCCCC--------------------HHHHHHHHHhhhhCceee
Q 030311 144 ILELPAGMLDDDKGD--------------------FVGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPAG~lD~~~e~--------------------p~~aA~REL~EETG~~i~ 176 (179)
.|.+|+|.+|. +|+ +..||+||+.||||+.+.
T Consensus 41 ~~~fPGG~vd~-~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~ 92 (232)
T 3qsj_A 41 FVAFPGGAADP-SDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLA 92 (232)
T ss_dssp CEECSEEECCH-HHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCS
T ss_pred cEECCceeEec-CCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceec
Confidence 35899999997 554 589999999999999764
No 74
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=97.28 E-value=7.3e-05 Score=61.62 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=27.0
Q ss_pred EEEecc-cccCCCC------CCH---HHHHHHHHhhhhCceee
Q 030311 144 ILELPA-GMLDDDK------GDF---VGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPA-G~lD~~~------e~p---~~aA~REL~EETG~~i~ 176 (179)
.|++|+ |.++. + |++ .+||+|||+||||+.+.
T Consensus 88 ~W~~p~gG~v~~-Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~ 129 (235)
T 2dho_A 88 CFTNTCCSHPLS-NPAELEESDALGVRRAAQRRLKAELGIPLE 129 (235)
T ss_dssp CEESSEEECCBS-SHHHHCCGGGHHHHHHHHHHHHHHHCCCGG
T ss_pred cEEeccCceecC-CCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence 579995 88997 6 674 99999999999999854
No 75
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=97.23 E-value=6.3e-05 Score=63.46 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.5
Q ss_pred EEEecccccCCCCC-CHHHHHHHHHhhhhCc
Q 030311 144 ILELPAGMLDDDKG-DFVGTAVREVSFILLL 173 (179)
Q Consensus 144 ~lElPAG~lD~~~e-~p~~aA~REL~EETG~ 173 (179)
.||+|+|++|. +| +++++..|||.||+|+
T Consensus 55 ~weFPGGkVe~-gE~t~e~aL~REl~EElg~ 84 (214)
T 3kvh_A 55 LLGFPGGFVDR-RFWSLEDGLNRVLGLGLGC 84 (214)
T ss_dssp CEECSEEEECT-TTCCHHHHHHHSCCSCC--
T ss_pred EEeCCCccCCC-CCCCHHHHHHHHHHHhhCC
Confidence 56999999998 78 9999999999999996
No 76
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=97.17 E-value=8.3e-05 Score=61.89 Aligned_cols=32 Identities=13% Similarity=-0.158 Sum_probs=27.1
Q ss_pred EEEecc-cccCCCC------CCH---HHHHHHHHhhhhCceee
Q 030311 144 ILELPA-GMLDDDK------GDF---VGTAVREVSFILLLDFL 176 (179)
Q Consensus 144 ~lElPA-G~lD~~~------e~p---~~aA~REL~EETG~~i~ 176 (179)
.|++|+ |.++. + |++ .+||+|||+||||+.+.
T Consensus 99 ~W~~p~gG~v~~-G~~E~~~Et~~~~~eAA~REl~EElGi~~~ 140 (246)
T 2pny_A 99 YFTDSCSSHPLY-NPAELEEKDAIGVRRAAQRRLQAELGIPGE 140 (246)
T ss_dssp CBCCSEEECCBS-SHHHHCCGGGHHHHHHHHHHHHHHHCCCTT
T ss_pred ceEeccCceecc-CCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence 468986 88886 6 787 89999999999999853
No 77
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=96.11 E-value=0.0021 Score=55.85 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=24.4
Q ss_pred EEecccccCCCCCCHHHHHHHHHhhhh-Cceeee
Q 030311 145 LELPAGMLDDDKGDFVGTAVREVSFIL-LLDFLL 177 (179)
Q Consensus 145 lElPAG~lD~~~e~p~~aA~REL~EET-G~~i~~ 177 (179)
|.+|+|+++. + ...+|+||+.||| |+++++
T Consensus 204 W~LPG~~~~~-~--~~~~a~RE~~EEttGl~v~~ 234 (321)
T 3rh7_A 204 LSLPNCTVEG-G--DPARTLAAYLEQLTGLNVTI 234 (321)
T ss_dssp EBCCEEEESS-S--CHHHHHHHHHHHHHSSCEEE
T ss_pred ccCCcccCCC-C--hhHHHHHHHHHHhcCCEEee
Confidence 7999887764 3 3358999999997 999986
No 78
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=35.65 E-value=18 Score=24.08 Aligned_cols=17 Identities=0% Similarity=0.045 Sum_probs=14.2
Q ss_pred HHHHHHhhhhCceeeec
Q 030311 162 TAVREVSFILLLDFLLS 178 (179)
Q Consensus 162 aA~REL~EETG~~i~~~ 178 (179)
.-.|+|+||||.+|.+.
T Consensus 25 ~~I~~I~e~tg~~I~i~ 41 (71)
T 1vig_A 25 ANINRIKDQYKVSVRIP 41 (71)
T ss_dssp CHHHHHHHHTCCEEECC
T ss_pred ccHHHHHHHHCCEEEEC
Confidence 35789999999998864
No 79
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=33.55 E-value=22 Score=23.64 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.|+++||||.+|.++
T Consensus 24 G~~Ik~I~~~tga~I~i~ 41 (73)
T 2axy_A 24 GESVKKMREESGARINIS 41 (73)
T ss_dssp GHHHHHHHHHHCCEEEEC
T ss_pred CHHHHHHHHHHCCEEEEe
Confidence 567889999999999875
No 80
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.85 E-value=20 Score=24.91 Aligned_cols=17 Identities=0% Similarity=0.008 Sum_probs=14.2
Q ss_pred HHHHHHhhhhCceeeec
Q 030311 162 TAVREVSFILLLDFLLS 178 (179)
Q Consensus 162 aA~REL~EETG~~i~~~ 178 (179)
.-.|+|+||||.+|.+.
T Consensus 30 ~tIk~Iqe~Tga~I~I~ 46 (83)
T 2dgr_A 30 ATIKRIQQRTHTYIVTP 46 (83)
T ss_dssp SSHHHHHHHTTCEEECC
T ss_pred hHHHHHHHHhCCeEEec
Confidence 35789999999999874
No 81
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=30.53 E-value=25 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=22.0
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++- + .-+.-.|+|+|+||.+|.+.
T Consensus 17 ~i~Ip~~~ig~IIG----kgG~~Ik~I~~~tga~I~i~ 50 (85)
T 2opv_A 17 EIMIPAGKAGLVIG----KGGETIKQLQERAGVKMILI 50 (85)
T ss_dssp EEEECTTTHHHHHT----TTTHHHHHHHHHHTCEEEEC
T ss_pred EEEeChhheeeeEC----CCCHHHHHHHHHHCCEEEEc
Confidence 5677765443 2 22467889999999998764
No 82
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.43 E-value=26 Score=25.16 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+++|.-++- + +-+.-.|+|+||||.+|.+.
T Consensus 20 ~i~Ip~~~ig~IIG----~gG~~Ir~I~eetg~~I~I~ 53 (104)
T 2ctk_A 20 EVEVPFDLHRYVIG----QKGSGIRKMMDEFEVNIHVP 53 (104)
T ss_dssp EEECCHHHHHHHHC----SSSHHHHHHHHHTCCEEECC
T ss_pred EEEEChHHccceeC----CCchHHHHHHHHHCCEEEec
Confidence 4566654433 2 12457899999999999864
No 83
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=28.26 E-value=28 Score=24.24 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=20.8
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++- ..+ +.-.|+|+|+||.+|.+.
T Consensus 18 ~i~Ip~~~vG~IIGkg----G~~Ik~I~~~tga~I~I~ 51 (94)
T 1x4m_A 18 EIMIPASKAGLVIGKG----GETIKQLQERAGVKMVMI 51 (94)
T ss_dssp EEEECHHHHHHHSCSS----SSHHHHHHHHHTSEEEEC
T ss_pred EEEEChhhcceEECCC----CHHHHHHHHHHCCeEEec
Confidence 4667765433 212 336789999999999864
No 84
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=28.05 E-value=31 Score=23.76 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=21.4
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++- . .-+.-.|+|+||||.+|.++
T Consensus 17 ~i~Ip~~~vg~IIG----kgG~~Ik~I~~~tga~I~I~ 50 (89)
T 1j5k_A 17 QVTIPKDLAGSIIG----KGGQRIKQIRHESGASIKID 50 (89)
T ss_dssp EEEEEHHHHHHHHC----GGGHHHHHHHHHTCCEEEEC
T ss_pred EEEEChhhcceeEC----CCCHhHHHHHHHhCCeEEec
Confidence 4566754332 2 23567899999999999874
No 85
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=27.81 E-value=32 Score=23.27 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=22.4
Q ss_pred EEEecccccCCCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++-.= =-.-+.-.|+++||||.+|.++
T Consensus 10 ~i~Vp~~~vg~i-IGkgG~~Ik~I~~~tga~I~i~ 43 (82)
T 1zzk_A 10 QVTIPKDLAGSI-IGKGGQRIKQIRHESGASIKID 43 (82)
T ss_dssp EEEEETTTGGGG-TCGGGHHHHHHHHHHCCEEEEC
T ss_pred EEEEChHhcCee-ECCCchHHHHHHHHHCCEEEEc
Confidence 466776544310 0134668899999999998874
No 86
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=26.40 E-value=35 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=22.1
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++- + .-+.-.++++|+||.+|.++
T Consensus 9 ~i~Ip~~~vg~IIG----kgG~~Ik~I~~~sga~I~i~ 42 (82)
T 1wvn_A 9 ELTIPNNLIGCIIG----RQGANINEIRQMSGAQIKIA 42 (82)
T ss_dssp EEEEEGGGHHHHHC----GGGHHHHHHHHHHCCEEEEC
T ss_pred EEEEchHhccceeC----CCchhHHHHHHHhCCEEEEe
Confidence 4567765543 2 23567889999999999874
No 87
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.23 E-value=17 Score=27.49 Aligned_cols=19 Identities=5% Similarity=0.107 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhCceeee
Q 030311 159 FVGTAVREVSFILLLDFLL 177 (179)
Q Consensus 159 p~~aA~REL~EETG~~i~~ 177 (179)
|-+.-.|.|+||||.+|.+
T Consensus 30 P~G~tiK~Iq~eTG~kI~I 48 (131)
T 1k1g_A 30 PRGNTLKNIEKECNAKIMI 48 (131)
T ss_dssp SSSHHHHHHHHHSCCEEEE
T ss_pred CCcHHHHHHHHHHCCeEEe
Confidence 4456788999999999987
No 88
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=26.18 E-value=1.1e+02 Score=22.23 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCeEEEeCCCCCHHHHhhhhhCchHHHHHHHhhhccccccCCceeEEEEEEEEEEEeCceeeEEEEEEEEEecC
Q 030311 58 QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKE 131 (179)
Q Consensus 58 ~~v~V~~~~~ls~~~l~~~~~~~~Fk~Wl~~l~~sl~llsd~~~~Lr~i~iq~vd~fG~~~gFlk~~adv~~~~ 131 (179)
..|.|.+.+- .|..+-.||+.|+..-| ..+.++.+. . ++.-|.|++++-...++
T Consensus 48 ~~vqV~l~~v----------~F~~L~~WL~~L~~~~G------v~v~~l~l~---~-~~~~G~V~v~rL~l~r~ 101 (110)
T 1uv7_A 48 EMMQVWIQPL----------PFSQLVSWIAYLQERQG------VSVDAIDID---R-GKVNGVVEVKRLQLKRG 101 (110)
T ss_dssp SEEEEEECCB----------CHHHHHHHHHHHHHHSC------CEEEEEEEE---E-C----CEEEEEEEEECC
T ss_pred CEEEEEECCC----------CHHHHHHHHHHHHHhcC------ceEEEEEEe---e-cCCCCEEEEEEEEeecc
Confidence 4788888663 46788899999987544 355555553 2 44567888877665443
No 89
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=26.13 E-value=34 Score=22.43 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.++++|+||.+|.+.
T Consensus 22 G~~Ik~I~~~tga~I~i~ 39 (76)
T 1dtj_A 22 GKTLVEYQELTGARIQIS 39 (76)
T ss_dssp THHHHHHHHHHCCEEEEC
T ss_pred chHHHHHHHHhCCEEEEC
Confidence 457889999999999874
No 90
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=26.13 E-value=32 Score=24.88 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=22.0
Q ss_pred EEEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 143 VILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 143 ~~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
..+.+|.-++- . .-+.-.++|+||||.+|++.
T Consensus 13 ~~i~Ip~~~iG~IIG----kgG~~Ik~I~~~TGakI~I~ 47 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIG----RSGEMIKKIQNDAGVRIQFK 47 (106)
T ss_dssp EEEEEETTTHHHHHT----TTTHHHHHHHHHHTCEEEEC
T ss_pred EEEEECHHHcCccCC----CCcHHHHHHHHHHCcEEEEe
Confidence 35667755443 2 22457889999999999874
No 91
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=26.08 E-value=36 Score=22.52 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.++++|+||.+|.+.
T Consensus 24 G~~Ik~I~~~tga~I~i~ 41 (76)
T 2p2r_A 24 GAKINEIRQMSGAQIKIA 41 (76)
T ss_dssp GHHHHHHHHHHCCEEEEC
T ss_pred ChHHHHHHHHHCCEEEEc
Confidence 567889999999999874
No 92
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.99 E-value=26 Score=26.26 Aligned_cols=20 Identities=5% Similarity=-0.081 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhCceeeec
Q 030311 159 FVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 159 p~~aA~REL~EETG~~i~~~ 178 (179)
|-+.-.|.|+||||.+|.+.
T Consensus 36 pgG~tiK~I~~eTG~kI~I~ 55 (119)
T 2yqr_A 36 PGCSYLQHIQIETGAKVFLR 55 (119)
T ss_dssp GGGHHHHHHHHHHCCEEEEE
T ss_pred CCChHHHHHHHHHCCEEEEe
Confidence 45677899999999999874
No 93
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=25.74 E-value=34 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEEecccccC---CCCCCHHHHHHHHHhhhhCceeeec
Q 030311 144 ILELPAGMLD---DDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 144 ~lElPAG~lD---~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
.+.+|.-++- + .-+.-.|+|+||||.+|.+.
T Consensus 18 ~i~Ip~~~ig~IIG----kgG~~Ik~I~~~tga~I~I~ 51 (104)
T 1we8_A 18 QLSVPQRSVGRIIG----RGGETIRSICKASGAKITCD 51 (104)
T ss_dssp EEEEETTTHHHHHT----TTSHHHHHHHHHHCCEEEEC
T ss_pred EEEEChhheeeeEC----CCCHHHHHHHHHHCCEEEEe
Confidence 4567765443 2 12457889999999999874
No 94
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=25.12 E-value=32 Score=24.65 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=14.4
Q ss_pred EeCCCCCHHHHhhhhhC
Q 030311 63 VAAPGLSESDFRCAVES 79 (179)
Q Consensus 63 ~~~~~ls~~~l~~~~~~ 79 (179)
.|||+|++++|...++.
T Consensus 8 rLPP~LteeeF~~~l~~ 24 (91)
T 1uw4_A 8 RLPPTLTKEQLQEHLQP 24 (91)
T ss_dssp EECTTCCHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHhcC
Confidence 58999999999986663
No 95
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.53 E-value=29 Score=24.22 Aligned_cols=17 Identities=0% Similarity=0.133 Sum_probs=14.3
Q ss_pred HHHHHHhhhhCceeeec
Q 030311 162 TAVREVSFILLLDFLLS 178 (179)
Q Consensus 162 aA~REL~EETG~~i~~~ 178 (179)
.-.|+|+||||.+|.+.
T Consensus 37 ~~Ik~I~~etg~~I~i~ 53 (94)
T 2cte_A 37 EKLQDLELKTATKIQIP 53 (94)
T ss_dssp CHHHHHHHHTTCCCBCC
T ss_pred hhHHHHHHHHCCEEEeC
Confidence 46789999999999873
No 96
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=24.19 E-value=35 Score=24.44 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=22.3
Q ss_pred EEEEecccccCCCCCCHHHHHHHHHhhhhCceeeec
Q 030311 143 VILELPAGMLDDDKGDFVGTAVREVSFILLLDFLLS 178 (179)
Q Consensus 143 ~~lElPAG~lD~~~e~p~~aA~REL~EETG~~i~~~ 178 (179)
..+.+|.-++-.= =-.-+.-.|+|+|+||.+|.+.
T Consensus 9 ~~i~IP~~~vG~I-IGkgG~~Ik~I~~~TGa~I~I~ 43 (107)
T 2hh2_A 9 MTFSIPTHKCGLV-IGRGGENVKAINQQTGAFVEIS 43 (107)
T ss_dssp EEEEEEGGGTTTT-STTTTCHHHHHHHHSSSEEEEC
T ss_pred EEEEECHHHcCcc-CCCCcHHHHHHHHHhCCEEEEc
Confidence 4567776554410 0012346789999999999874
No 97
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=24.13 E-value=58 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.5
Q ss_pred CCHHHHhhhhhCchHHHHHHHh
Q 030311 68 LSESDFRCAVESTLFKQWLKNL 89 (179)
Q Consensus 68 ls~~~l~~~~~~~~Fk~Wl~~l 89 (179)
||+++...++.++.|...+++-
T Consensus 1 LseEEk~~I~~S~~F~~F~~rs 22 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRA 22 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHHHHH
Confidence 6889999999999999998864
No 98
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=23.03 E-value=44 Score=22.74 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.++|+|+||.+|.+.
T Consensus 22 G~~Ik~I~~~tga~I~I~ 39 (87)
T 1ec6_A 22 GKTLVEYQELTGARIQIS 39 (87)
T ss_dssp GHHHHHHHHHHCCEEEEC
T ss_pred cHhHHHHHHHhCCEEEEc
Confidence 567889999999999874
No 99
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=22.74 E-value=30 Score=25.39 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=13.6
Q ss_pred EeCCCCCHHHHhhhhh
Q 030311 63 VAAPGLSESDFRCAVE 78 (179)
Q Consensus 63 ~~~~~ls~~~l~~~~~ 78 (179)
.|||+|++++|...++
T Consensus 16 rLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 16 RLPPGLTKEQLEEQLR 31 (97)
T ss_dssp CCCSCSCHHHHTTTTS
T ss_pred CCCCCCCHHHHHHHhC
Confidence 4899999999997555
No 100
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=22.60 E-value=41 Score=23.30 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.|+|+|+||.+|.+.
T Consensus 34 G~~Ik~I~~~tga~I~I~ 51 (92)
T 1x4n_A 34 GEQISRIQQESGCKIQIA 51 (92)
T ss_dssp SHHHHHHHHHSCCEEEEC
T ss_pred chHHHHHHHHhCCEEEEc
Confidence 346789999999999874
No 101
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.35 E-value=47 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhCceeeec
Q 030311 161 GTAVREVSFILLLDFLLS 178 (179)
Q Consensus 161 ~aA~REL~EETG~~i~~~ 178 (179)
+.-.|+++||||.+|.+.
T Consensus 36 G~~Ir~I~e~tg~~I~i~ 53 (95)
T 2ctm_A 36 GKAIRKIMDEFKVDIRFP 53 (95)
T ss_dssp SCHHHHHHHHHTCEEECC
T ss_pred cchHHHHHHHHCCeEEec
Confidence 347889999999998763
Done!