BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030312
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 294
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 15/130 (11%)
Query: 2 DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFF 61
D + +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F
Sbjct: 20 DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLF 77
Query: 62 YEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIA 108
+ +E+ + +D + D+G+DLS Y F DG P +L L +K+A
Sbjct: 78 FNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLA 137
Query: 109 YRHRAIAHKY 118
+R+R + Y
Sbjct: 138 FRYRRVKEMY 147
>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
Length = 274
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
+ +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F+
Sbjct: 3 MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60
Query: 65 IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
+E+ + +D + D+G+DLS Y F DG P +L L +K+A+R+
Sbjct: 61 LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPAANLCLGSGVHGGVDWMRKLAFRY 120
Query: 112 RAIAHKY 118
R + Y
Sbjct: 121 RRVKEMY 127
>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
Length = 274
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
+ +VF+WD+DET+I+ SLL GTFA + KD V+IG M E I N+ D F+
Sbjct: 3 MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60
Query: 65 IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
+E+ + +D + D+G+DLS Y F DG P +L L +K+A+R+
Sbjct: 61 LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRY 120
Query: 112 RAIAHKY 118
R + Y
Sbjct: 121 RRVKEMY 127
>pdb|1BAS|A Chain A, Three-Dimensional Structures Of Acidic And Basic
Fibroblast Growth Factors
Length = 154
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 40 KGVQIGR---MWENHIL----NVCDECFFYEQIENNN 69
KGV R M E+ L +V DECFF+E++E+NN
Sbjct: 74 KGVSANRYLAMKEDGRLLASKSVTDECFFFERLESNN 110
>pdb|1II4|A Chain A, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|B Chain B, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|C Chain C, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|D Chain D, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|A Chain A, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|B Chain B, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|C Chain C, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|D Chain D, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 155
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 40 KGVQIGR---MWENHIL----NVCDECFFYEQIENNN 69
KGV R M E+ L +V DECFF+E++E+NN
Sbjct: 75 KGVSANRYLAMKEDGRLLASKSVTDECFFFERLESNN 111
>pdb|1BLA|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
pdb|1BLD|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
Length = 155
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 40 KGVQIGR---MWENHIL----NVCDECFFYEQIENNN 69
KGV R M E+ L +V DECFF+E++E+NN
Sbjct: 75 KGVSANRYLAMKEDGRLLASKSVTDECFFFERLESNN 111
>pdb|1BFB|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
Tetramer Fragment
pdb|1BFC|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
Hexamer Fragment
Length = 147
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 40 KGVQIGR---MWENHIL----NVCDECFFYEQIENNN 69
KGV R M E+ L +V DECFF+E++E+NN
Sbjct: 67 KGVSANRYLAMKEDGRLLASKSVTDECFFFERLESNN 103
>pdb|1BFG|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At 1.6
Angstroms Resolution
Length = 146
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 40 KGVQIGR---MWENHIL----NVCDECFFYEQIENNN 69
KGV R M E+ L +V DECFF+E++E+NN
Sbjct: 66 KGVSANRYLAMKEDGRLLASKSVTDECFFFERLESNN 102
>pdb|1CVS|A Chain A, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|B Chain B, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1EV2|A Chain A, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|B Chain B, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|C Chain C, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|D Chain D, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1FQ9|A Chain A, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
pdb|1FQ9|B Chain B, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
Length = 132
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 54 NVCDECFFYEQIENNN 69
+V DECFF+E++E+NN
Sbjct: 73 SVTDECFFFERLESNN 88
>pdb|1FGA|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
Growth Factor At 1.6 Angstroms Resolution And Analysis
Of Presumed Heparin Binding Sites By Selenate
Substitution
pdb|2FGF|A Chain A, Three-Dimensional Structure Of Human Basic Fibroblast
Growth Factor, A Structural Homolog Of Interleukin 1beta
pdb|4FGF|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
Growth Factor At 1.6 Angstroms Resolution And Analysis
Of Presumed Heparin Binding Sites By Selenate
Substitution
Length = 146
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 88 VTDECFFFERLESNN 102
>pdb|1XI7|A Chain A, Nmr Structure Of The Carboxyl-Terminal Cysteine Domain Of
The Vhv1.1 Polydnaviral Gene Product
pdb|1XJ1|A Chain A, 3d Solution Structure Of The C-Terminal Cysteine-Rich
Domain Of The Vhv1.1 Polydnaviral Gene Product
Length = 61
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 62 YEQIENNNTPFLDALKQYDDGRDLSDYEFDRD--GLCPPFD 100
Y++ N + P +Y D +++ + DRD G+C PFD
Sbjct: 11 YQKCVNADKPCCSKTVRYGDSKNVRKFICDRDGEGVCVPFD 51
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
I NV + EQI + + A KQ +DGR LSDY ++
Sbjct: 23 IENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>pdb|1BFF|A Chain A, The 154 Amino Acid Form Of Human Basic Fibroblast Growth
Factor
Length = 129
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 71 VTDECFFFERLESNN 85
>pdb|2BFH|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At
1.6 Angstroms Resolution
Length = 128
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 55 VCDECFFYEQIENNN 69
V DECFF+E++E+NN
Sbjct: 70 VTDECFFFERLESNN 84
>pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus
Mutans Ua159
Length = 238
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 91 DRDGLCPPFDDLSLKKIAYRHRAIAHKYKEVFYSISQSHFSL 132
D+DG PP + +LK++ Y R IAH ++ + + S+
Sbjct: 128 DKDG-NPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSV 168
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
I NV + E I + L A KQ +DGR LSDY ++
Sbjct: 25 IENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIHKE 66
>pdb|1S28|A Chain A, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|B Chain B, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|C Chain C, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|D Chain D, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
Length = 132
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 90 FDR--DGLCPPFDDLSLKKIAYRHRAIAHKYKEVFYSISQSHFSLVYYL 136
FDR DGL + + + H ++KEV I Q F VY+L
Sbjct: 7 FDRLIDGLAKDYGXPGFPEKKHEHEVYCFEFKEVSIRIYQDKFKWVYFL 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,834,838
Number of Sequences: 62578
Number of extensions: 236819
Number of successful extensions: 577
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 21
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)