Query 030312
Match_columns 179
No_of_seqs 67 out of 69
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 11:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01658 EYA-cons_domain eyes 100.0 3.3E-76 7.1E-81 509.9 12.4 149 5-178 1-149 (274)
2 KOG3107 Predicted haloacid deh 100.0 1E-64 2.2E-69 459.2 10.5 154 1-178 192-359 (468)
3 TIGR02250 FCP1_euk FCP1-like p 71.2 2.2 4.7E-05 34.0 1.3 17 6-22 6-22 (156)
4 COG0546 Gph Predicted phosphat 68.9 4.3 9.3E-05 33.0 2.5 48 6-55 4-58 (220)
5 TIGR02137 HSK-PSP phosphoserin 66.2 3.3 7.2E-05 34.0 1.4 24 7-33 2-25 (203)
6 TIGR01491 HAD-SF-IB-PSPlk HAD- 65.4 3.5 7.6E-05 31.6 1.3 18 6-23 4-21 (201)
7 PF08411 Exonuc_X-T_C: Exonucl 64.5 10 0.00022 33.1 4.1 31 146-176 204-235 (269)
8 PHA02597 30.2 hypothetical pro 62.5 3.5 7.7E-05 32.2 0.8 26 7-33 3-28 (197)
9 TIGR01681 HAD-SF-IIIC HAD-supe 61.7 3.9 8.4E-05 30.9 0.9 12 7-18 1-12 (128)
10 PRK13707 conjugal transfer pil 59.9 6.3 0.00014 30.2 1.8 28 4-31 17-44 (101)
11 PF05152 DUF705: Protein of un 59.1 5.1 0.00011 36.5 1.3 15 4-18 120-134 (297)
12 TIGR01686 FkbH FkbH-like domai 58.8 5.6 0.00012 34.5 1.5 15 4-18 1-15 (320)
13 PRK10725 fructose-1-P/6-phosph 57.2 7.4 0.00016 29.7 1.8 24 7-30 6-29 (188)
14 PF03031 NIF: NLI interacting 56.8 4.7 0.0001 30.7 0.6 16 8-23 2-17 (159)
15 PF07178 TraL: TraL protein; 54.7 7.9 0.00017 28.7 1.6 28 4-31 11-38 (95)
16 TIGR02253 CTE7 HAD superfamily 53.7 7.3 0.00016 30.6 1.3 20 7-26 3-22 (221)
17 PRK14988 GMP/IMP nucleotidase; 51.1 7.1 0.00015 32.0 0.9 13 7-19 11-23 (224)
18 PLN02575 haloacid dehalogenase 50.5 15 0.00032 34.1 2.9 48 7-56 132-187 (381)
19 TIGR01549 HAD-SF-IA-v1 haloaci 49.2 6.8 0.00015 29.1 0.5 16 8-23 1-16 (154)
20 TIGR01422 phosphonatase phosph 48.8 8.9 0.00019 31.3 1.1 16 7-22 3-18 (253)
21 TIGR02009 PGMB-YQAB-SF beta-ph 48.0 11 0.00023 28.6 1.4 23 7-29 2-24 (185)
22 TIGR03351 PhnX-like phosphonat 47.6 19 0.00042 28.3 2.8 50 7-56 2-56 (220)
23 PRK13288 pyrophosphatase PpaX; 46.1 13 0.00028 29.4 1.6 24 7-30 4-27 (214)
24 TIGR01548 HAD-SF-IA-hyp1 haloa 46.1 7.6 0.00016 30.5 0.3 13 8-20 2-14 (197)
25 PRK10563 6-phosphogluconate ph 43.8 13 0.00028 29.4 1.3 27 7-33 5-34 (221)
26 TIGR02254 YjjG/YfnB HAD superf 42.8 14 0.00031 28.7 1.3 25 7-31 2-26 (224)
27 PF12710 HAD: haloacid dehalog 42.4 13 0.00028 28.1 1.1 14 9-22 1-14 (192)
28 TIGR01454 AHBA_synth_RP 3-amin 42.4 10 0.00022 29.8 0.5 21 9-29 1-21 (205)
29 TIGR01993 Pyr-5-nucltdase pyri 42.0 13 0.00028 28.7 1.0 19 8-26 2-20 (184)
30 PRK11590 hypothetical protein; 41.2 17 0.00038 29.2 1.7 14 5-18 5-18 (211)
31 PRK13226 phosphoglycolate phos 40.9 50 0.0011 26.8 4.3 48 7-54 13-65 (229)
32 PLN02954 phosphoserine phospha 40.1 14 0.0003 29.3 0.9 18 6-23 12-29 (224)
33 TIGR02762 TraL_TIGR type IV co 39.7 24 0.00052 26.4 2.1 27 4-30 11-37 (95)
34 PLN02779 haloacid dehalogenase 38.1 15 0.00032 31.5 0.9 27 6-32 40-67 (286)
35 TIGR02251 HIF-SF_euk Dullard-l 37.3 14 0.0003 29.2 0.5 13 8-20 3-15 (162)
36 PRK13478 phosphonoacetaldehyde 35.9 18 0.00039 30.0 1.0 16 7-22 5-20 (267)
37 TIGR01449 PGP_bact 2-phosphogl 35.3 15 0.00033 28.5 0.5 11 9-19 1-11 (213)
38 PRK10748 flavin mononucleotide 35.3 22 0.00049 29.1 1.5 24 7-30 11-34 (238)
39 PRK13222 phosphoglycolate phos 35.2 51 0.0011 25.8 3.4 27 7-33 7-36 (226)
40 TIGR01509 HAD-SF-IA-v3 haloaci 34.6 15 0.00032 27.5 0.3 16 9-24 2-17 (183)
41 TIGR00338 serB phosphoserine p 34.4 19 0.00042 28.3 0.9 25 7-33 15-39 (219)
42 PF07026 DUF1317: Protein of u 34.4 45 0.00097 24.2 2.7 26 36-61 33-58 (60)
43 PRK13223 phosphoglycolate phos 34.4 19 0.00042 30.4 1.0 30 4-33 11-43 (272)
44 TIGR01489 DKMTPPase-SF 2,3-dik 34.3 21 0.00046 26.9 1.1 25 7-33 2-26 (188)
45 PRK09449 dUMP phosphatase; Pro 33.7 22 0.00047 28.1 1.1 12 7-18 4-15 (224)
46 PRK13582 thrH phosphoserine ph 33.6 24 0.00052 27.4 1.3 12 7-18 2-13 (205)
47 TIGR01490 HAD-SF-IB-hyp1 HAD-s 33.3 16 0.00035 28.3 0.3 15 9-23 2-16 (202)
48 TIGR01990 bPGM beta-phosphoglu 33.2 18 0.00038 27.4 0.5 20 9-28 2-21 (185)
49 PRK11587 putative phosphatase; 33.1 20 0.00044 28.6 0.9 23 7-29 4-26 (218)
50 COG0637 Predicted phosphatase/ 33.0 20 0.00044 29.4 0.9 51 7-57 3-57 (221)
51 TIGR01488 HAD-SF-IB Haloacid D 32.9 18 0.00039 27.2 0.5 15 9-23 2-16 (177)
52 PLN02770 haloacid dehalogenase 32.8 25 0.00055 29.0 1.4 23 7-29 23-45 (248)
53 PLN03243 haloacid dehalogenase 32.1 23 0.00051 30.1 1.1 49 7-55 25-79 (260)
54 TIGR01428 HAD_type_II 2-haloal 31.7 85 0.0018 24.4 4.1 26 7-33 2-27 (198)
55 TIGR01493 HAD-SF-IA-v2 Haloaci 31.6 25 0.00054 26.6 1.1 24 8-31 1-24 (175)
56 PLN02940 riboflavin kinase 30.7 57 0.0012 29.4 3.4 29 5-33 10-41 (382)
57 TIGR02252 DREG-2 REG-2-like, H 30.5 24 0.00052 27.4 0.9 20 7-26 1-20 (203)
58 cd01427 HAD_like Haloacid deha 30.3 20 0.00042 24.5 0.3 18 8-25 1-18 (139)
59 PRK11779 sbcB exonuclease I; P 29.8 82 0.0018 30.0 4.4 19 145-163 411-429 (476)
60 PRK13225 phosphoglycolate phos 28.8 25 0.00055 30.2 0.8 28 6-33 62-92 (273)
61 TIGR01672 AphA HAD superfamily 27.3 31 0.00067 29.6 1.1 16 7-22 64-79 (237)
62 TIGR00756 PPR pentatricopeptid 25.4 97 0.0021 16.7 2.6 27 19-50 2-28 (35)
63 PF04068 RLI: Possible Fer4-li 25.3 46 0.001 21.1 1.3 9 7-15 2-10 (35)
64 PRK09552 mtnX 2-hydroxy-3-keto 25.1 34 0.00074 27.5 0.9 19 6-24 3-21 (219)
65 cd02188 gamma_tubulin Gamma-tu 24.8 1.3E+02 0.0027 28.1 4.6 62 4-72 58-131 (431)
66 PF03767 Acid_phosphat_B: HAD 23.4 49 0.0011 27.9 1.5 17 6-23 72-88 (229)
67 PF08994 T4_Gp59_C: T4 gene Gp 23.2 30 0.00065 27.2 0.2 22 15-38 46-68 (103)
68 PRK10826 2-deoxyglucose-6-phos 23.1 50 0.0011 26.3 1.5 23 6-28 7-29 (222)
69 TIGR02247 HAD-1A3-hyp Epoxide 22.9 43 0.00094 26.3 1.1 15 7-21 3-17 (211)
70 TIGR01545 YfhB_g-proteo haloac 22.9 38 0.00083 27.8 0.8 20 5-24 4-23 (210)
71 PF08360 TetR_C_5: QacR-like p 22.5 1E+02 0.0023 24.1 3.1 40 12-53 87-126 (131)
72 PRK11133 serB phosphoserine ph 22.3 42 0.00092 29.9 1.0 17 6-22 110-126 (322)
73 KOG4571 Activating transcripti 22.1 1.2E+02 0.0026 27.9 3.8 12 104-115 234-246 (294)
74 PRK15376 pathogenicity island 21.6 89 0.0019 31.2 3.1 55 85-167 500-561 (670)
75 PF06941 NT5C: 5' nucleotidase 21.6 88 0.0019 24.8 2.6 24 10-33 6-29 (191)
76 PF06275 DUF1031: Protein of u 21.4 94 0.002 23.6 2.5 34 105-171 40-74 (80)
77 PHA03398 viral phosphatase sup 20.1 52 0.0011 30.1 1.1 19 4-22 126-144 (303)
No 1
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=3.3e-76 Score=509.85 Aligned_cols=149 Identities=58% Similarity=1.058 Sum_probs=146.6
Q ss_pred ceEEEEeeCcchhhhhhhhhchhhhhhhCCCCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCccccccccCCCCCC
Q 030312 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRD 84 (179)
Q Consensus 5 lerVFIWDLDETiIiF~SLLtGsyA~~~~~sKD~~~~v~LG~rmEemIf~laD~hfFfndlEecdqvhiddv~~dDnGqD 84 (179)
++||||||||||||||||||||+||++|+|+|||+++++||+|||+|||+|||+||||||||||||||||||++||||||
T Consensus 1 ~e~VfvWDlDETlIif~SLL~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~D 80 (274)
T TIGR01658 1 PENVYVWDMDETLILLHSLLNGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKD 80 (274)
T ss_pred CceeEEEeccchHHHHHHhhcchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhcccchhhhHHHhhcccccccccccccChHHHHHHHHHHh
Q 030312 85 LSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKEVFYSISQSHFSLVYYLVKCSSLFFQGLQNIFDKEMLRVWDELYD 164 (179)
Q Consensus 85 LS~y~F~~dgf~~p~~~~~mrKLA~ryR~Ike~Y~~~~~~~~~~~~~~~~~~~k~~~~y~~~l~~ll~~~~r~~w~~L~~ 164 (179)
||+|||.+|||++|.++.++||||||||+|||+|+ +||++||+|++|++|++||+
T Consensus 81 Ls~Y~F~~D~f~~p~~~~~~rKLAyR~R~I~e~Y~-------------------------~~v~~lL~~~~~~~w~~L~~ 135 (274)
T TIGR01658 81 LSRYEFKTDGFSTPTDDLNKRKLAYRHRAVAEIYE-------------------------KGLGPLLDPESMEALDELYS 135 (274)
T ss_pred ccccccccccCCCCccchhhhHHHHHHHHHHHHHH-------------------------hhhhhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 47999999999999999999
Q ss_pred hhHHhhhhhhhccC
Q 030312 165 MTDEYTDRWLSSGT 178 (179)
Q Consensus 165 ~~e~~TD~Wls~a~ 178 (179)
+||.+||+|||+|+
T Consensus 136 e~d~~TD~WLs~A~ 149 (274)
T TIGR01658 136 ETDVYTDRWLSSAL 149 (274)
T ss_pred HHHHhhhHHHHHHH
Confidence 99999999999984
No 2
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=100.00 E-value=1e-64 Score=459.19 Aligned_cols=154 Identities=33% Similarity=0.617 Sum_probs=148.0
Q ss_pred CCCCceEEEEeeCcchhhhhhhhhchhhhhhhCCCCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCccccccccCC
Q 030312 1 MDATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYD 80 (179)
Q Consensus 1 ~d~~lerVFIWDLDETiIiF~SLLtGsyA~~~~~sKD~~~~v~LG~rmEemIf~laD~hfFfndlEecdqvhiddv~~dD 80 (179)
.|+.+|||||||||||||||||||||+||++|+ |||..++++|+||||||||+||+||||||||||||||||||++||
T Consensus 192 ~ds~~eRVFiWDlDEtiIifhslL~gsya~~y~--kd~~~~v~ig~~mE~mifn~aDth~F~ndleecdq~~vDdvs~dD 269 (468)
T KOG3107|consen 192 GDSTLERVFIWDLDETIIIFHSLLTGSYATRYG--KDPRAAVSIGLMMEEMIFNLADTHLFFNDLEECDQVHVDDVSSDD 269 (468)
T ss_pred CCCcceeEEEeeccchHHHHHHHhhhhhhhhcc--CCchhhhHHHHHHHHHHHHhhhHHHHHHHHhhhcccccccccccC
Confidence 388999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC--------------chhhHHHHHHHHHHHHHhhhhhhhhcccchhhhHHHhhcccccccc
Q 030312 81 DGRDLSDYEFDRDGLCPPFD--------------DLSLKKIAYRHRAIAHKYKEVFYSISQSHFSLVYYLVKCSSLFFQG 146 (179)
Q Consensus 81 nGqDLS~y~F~~dgf~~p~~--------------~~~mrKLA~ryR~Ike~Y~~~~~~~~~~~~~~~~~~~k~~~~y~~~ 146 (179)
||||||.|+|.+|||++|.+ ..||||||||||++||+|++ |++|
T Consensus 270 ngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~----------------------y~nn 327 (468)
T KOG3107|consen 270 NGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNT----------------------YKNN 327 (468)
T ss_pred CcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHH----------------------HHhh
Confidence 99999999999999998553 45999999999999999997 6799
Q ss_pred cccccChHHHHHHHHHHhhhHHhhhhhhhccC
Q 030312 147 LQNIFDKEMLRVWDELYDMTDEYTDRWLSSGT 178 (179)
Q Consensus 147 l~~ll~~~~r~~w~~L~~~~e~~TD~Wls~a~ 178 (179)
++++++|.+|+.|++||.+||.+||+|+++|.
T Consensus 328 v~~l~~p~~~eaw~~lr~~~ev~tdsw~tsaL 359 (468)
T KOG3107|consen 328 VGGLTGPNKREAWLQLRAEIEVLTDSWLTSAL 359 (468)
T ss_pred hhcccCchhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999874
No 3
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=71.20 E-value=2.2 Score=34.01 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.0
Q ss_pred eEEEEeeCcchhhhhhh
Q 030312 6 TKVFIWDMDETLILLKS 22 (179)
Q Consensus 6 erVFIWDLDETiIiF~S 22 (179)
+.+-|+|||||+|=...
T Consensus 6 kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTK 22 (156)
T ss_pred ceEEEEeCCCCcccccc
Confidence 45779999999985443
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=68.90 E-value=4.3 Score=32.96 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=31.2
Q ss_pred eEEEEeeCcchhhhhhhhhchhhh---hhhCCCCChhHHHH----HHHHHHHHHHHh
Q 030312 6 TKVFIWDMDETLILLKSLLNGTFA---QSFNDLKDADKGVQ----IGRMWENHILNV 55 (179)
Q Consensus 6 erVFIWDLDETiIiF~SLLtGsyA---~~~~~sKD~~~~v~----LG~rmEemIf~l 55 (179)
.++.|||||.||+=....+..++. ++++ .++..... +|.-..++|..+
T Consensus 4 ~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~~~~~~~ 58 (220)
T COG0546 4 IKAILFDLDGTLVDSAEDILRAFNAALAELG--LPPLDEEEIRQLIGLGLDELIERL 58 (220)
T ss_pred CCEEEEeCCCccccChHHHHHHHHHHHHHcC--CCCCCHHHHHHHhcCCHHHHHHHH
Confidence 367899999999998888887443 5554 33222222 555666666654
No 5
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=66.20 E-value=3.3 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.0
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
|+.++|||+|||=- + -..++.+.|
T Consensus 2 ~la~FDlD~TLi~~--~-w~~~~~~~g 25 (203)
T TIGR02137 2 EIACLDLEGVLVPE--I-WIAFAEKTG 25 (203)
T ss_pred eEEEEeCCcccHHH--H-HHHHHHHcC
Confidence 67899999999943 2 456777765
No 6
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=65.40 E-value=3.5 Score=31.57 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.2
Q ss_pred eEEEEeeCcchhhhhhhh
Q 030312 6 TKVFIWDMDETLILLKSL 23 (179)
Q Consensus 6 erVFIWDLDETiIiF~SL 23 (179)
.+..|||||.|||=..+.
T Consensus 4 ~k~viFD~DGTLid~~~~ 21 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMSS 21 (201)
T ss_pred ceEEEEeCCCCCcCCccH
Confidence 468999999999975543
No 7
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=64.47 E-value=10 Score=33.08 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=14.7
Q ss_pred ccccccChHHHHHHHHHHhh-hHHhhhhhhhc
Q 030312 146 GLQNIFDKEMLRVWDELYDM-TDEYTDRWLSS 176 (179)
Q Consensus 146 ~l~~ll~~~~r~~w~~L~~~-~e~~TD~Wls~ 176 (179)
|....|+.++++.|.+.+.. +..-..+|++.
T Consensus 204 N~P~tL~~~E~~~W~~~~~~rL~~~~~~~~tl 235 (269)
T PF08411_consen 204 NFPETLSEEEQQRWQEYCQQRLTDPDGGWLTL 235 (269)
T ss_dssp H-GGG--HHHHHHHHHHHHHHS-HHH-----H
T ss_pred cChhhCCHHHHHHHHHHHHHHccCCccchHHH
Confidence 67778999999999986542 22222455543
No 8
>PHA02597 30.2 hypothetical protein; Provisional
Probab=62.49 E-value=3.5 Score=32.15 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=18.7
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
+.+|||||.|||=+..-+. ...++++
T Consensus 3 k~viFDlDGTLiD~~~~~~-~~~~~~g 28 (197)
T PHA02597 3 PTILTDVDGVLLSWQSGLP-YFAQKYN 28 (197)
T ss_pred cEEEEecCCceEchhhccH-HHHHhcC
Confidence 5789999999998776554 2334565
No 9
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=61.70 E-value=3.9 Score=30.88 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=10.9
Q ss_pred EEEEeeCcchhh
Q 030312 7 KVFIWDMDETLI 18 (179)
Q Consensus 7 rVFIWDLDETiI 18 (179)
+++|||||.|+.
T Consensus 1 kli~~DlD~Tl~ 12 (128)
T TIGR01681 1 KVIVFDLDNTLW 12 (128)
T ss_pred CEEEEeCCCCCC
Confidence 578999999998
No 10
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=59.93 E-value=6.3 Score=30.19 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=21.5
Q ss_pred CceEEEEeeCcchhhhhhhhhchhhhhh
Q 030312 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~SLLtGsyA~~ 31 (179)
+-+|++.|++||-++++-.+.=|-.++.
T Consensus 17 ~~~ri~~~~~DE~~~~~~~~~~Gi~~~~ 44 (101)
T PRK13707 17 NQSRWFGLPLDELIPAAICIGWGITTSK 44 (101)
T ss_pred CCCeEEeeeHHHHHHHHHHHHHHHHHch
Confidence 4579999999999988777665555553
No 11
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=59.11 E-value=5.1 Score=36.53 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.3
Q ss_pred CceEEEEeeCcchhh
Q 030312 4 TLTKVFIWDMDETLI 18 (179)
Q Consensus 4 ~lerVFIWDLDETiI 18 (179)
+.+.|-|+|||+|||
T Consensus 120 ~~phVIVfDlD~TLI 134 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLI 134 (297)
T ss_pred CCCcEEEEECCCccc
Confidence 457899999999999
No 12
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=58.84 E-value=5.6 Score=34.48 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=12.7
Q ss_pred CceEEEEeeCcchhh
Q 030312 4 TLTKVFIWDMDETLI 18 (179)
Q Consensus 4 ~lerVFIWDLDETiI 18 (179)
+..+++|||+|.||.
T Consensus 1 ~~~k~~v~DlDnTlw 15 (320)
T TIGR01686 1 PALKVLVLDLDNTLW 15 (320)
T ss_pred CCeEEEEEcCCCCCC
Confidence 357899999999984
No 13
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=57.22 E-value=7.4 Score=29.75 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=16.4
Q ss_pred EEEEeeCcchhhhhhhhhchhhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~ 30 (179)
.+.|||||-|||=......-.+.+
T Consensus 6 ~~viFD~DGTLiDs~~~~~~a~~~ 29 (188)
T PRK10725 6 AGLIFDMDGTILDTEPTHRKAWRE 29 (188)
T ss_pred eEEEEcCCCcCccCHHHHHHHHHH
Confidence 457999999999765544444433
No 14
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=56.76 E-value=4.7 Score=30.69 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=10.9
Q ss_pred EEEeeCcchhhhhhhh
Q 030312 8 VFIWDMDETLILLKSL 23 (179)
Q Consensus 8 VFIWDLDETiIiF~SL 23 (179)
.-|+|||||||--...
T Consensus 2 ~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEE-CTTTEEEESS
T ss_pred EEEEeCCCcEEEEeec
Confidence 4589999998865543
No 15
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=54.74 E-value=7.9 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.2
Q ss_pred CceEEEEeeCcchhhhhhhhhchhhhhh
Q 030312 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~SLLtGsyA~~ 31 (179)
+-+|++.|++||-++.+-.+.-|-..+.
T Consensus 11 ~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 11 DPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999998888777655543
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=53.65 E-value=7.3 Score=30.57 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.1
Q ss_pred EEEEeeCcchhhhhhhhhch
Q 030312 7 KVFIWDMDETLILLKSLLNG 26 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtG 26 (179)
++.|||||.||+=......-
T Consensus 3 ~~viFDlDGTL~ds~~~~~~ 22 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGLAEK 22 (221)
T ss_pred eEEEEeCCCCCcCCCCccCH
Confidence 57899999999987766543
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=51.07 E-value=7.1 Score=31.95 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=11.9
Q ss_pred EEEEeeCcchhhh
Q 030312 7 KVFIWDMDETLIL 19 (179)
Q Consensus 7 rVFIWDLDETiIi 19 (179)
+++|||||.||+=
T Consensus 11 k~vIFDlDGTL~d 23 (224)
T PRK14988 11 DTVLLDMDGTLLD 23 (224)
T ss_pred CEEEEcCCCCccc
Confidence 6799999999987
No 18
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=50.50 E-value=15 Score=34.06 Aligned_cols=48 Identities=23% Similarity=0.101 Sum_probs=27.6
Q ss_pred EEEEeeCcchhhh----hhhhhchhhhhhhCCCCChhHH----HHHHHHHHHHHHHhh
Q 030312 7 KVFIWDMDETLIL----LKSLLNGTFAQSFNDLKDADKG----VQIGRMWENHILNVC 56 (179)
Q Consensus 7 rVFIWDLDETiIi----F~SLLtGsyA~~~~~sKD~~~~----v~LG~rmEemIf~la 56 (179)
+.+|||||-|||= .+.-..-..++.+| ..++.. .-.|+.+++++-.+.
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G--~~~~~~e~~~~~~G~~~~~~l~~ll 187 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEEG--KSPPPAFILRRVEGMKNEQAISEVL 187 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHhcCCCHHHHHHHHh
Confidence 3579999999993 33222234566776 333322 235666666655543
No 19
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=49.23 E-value=6.8 Score=29.07 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.6
Q ss_pred EEEeeCcchhhhhhhh
Q 030312 8 VFIWDMDETLILLKSL 23 (179)
Q Consensus 8 VFIWDLDETiIiF~SL 23 (179)
+.|||+|-||+=....
T Consensus 1 ~iifD~DGTL~d~~~~ 16 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA 16 (154)
T ss_pred CeEecCCCcccccHHH
Confidence 4799999999876533
No 20
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=48.85 E-value=8.9 Score=31.28 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.2
Q ss_pred EEEEeeCcchhhhhhh
Q 030312 7 KVFIWDMDETLILLKS 22 (179)
Q Consensus 7 rVFIWDLDETiIiF~S 22 (179)
+..|||||.|||=+.+
T Consensus 3 k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGS 18 (253)
T ss_pred eEEEEeCCCCeecCCC
Confidence 5689999999997643
No 21
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=47.98 E-value=11 Score=28.62 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.3
Q ss_pred EEEEeeCcchhhhhhhhhchhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFA 29 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA 29 (179)
++.|||||.||+=......-.+.
T Consensus 2 ~~iiFD~DGTL~ds~~~~~~~~~ 24 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWK 24 (185)
T ss_pred CeEEEcCCCcccCChHHHHHHHH
Confidence 56899999999988776554443
No 22
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=47.60 E-value=19 Score=28.33 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=27.5
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhh---hCCCCChhHHH--HHHHHHHHHHHHhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQS---FNDLKDADKGV--QIGRMWENHILNVC 56 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~---~~~sKD~~~~v--~LG~rmEemIf~la 56 (179)
++.|||||-||+-......-.+.+. ++..-++.... ..|....+++-.++
T Consensus 2 k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 56 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALL 56 (220)
T ss_pred cEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHH
Confidence 4679999999997666555544433 33211222222 34555555554444
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=46.10 E-value=13 Score=29.39 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=17.8
Q ss_pred EEEEeeCcchhhhhhhhhchhhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~ 30 (179)
+..|||||.|||=......-.+.+
T Consensus 4 ~~viFD~DGTL~ds~~~~~~a~~~ 27 (214)
T PRK13288 4 NTVLFDLDGTLINTNELIISSFLH 27 (214)
T ss_pred cEEEEeCCCcCccCHHHHHHHHHH
Confidence 567999999999776665555443
No 24
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=46.07 E-value=7.6 Score=30.48 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.5
Q ss_pred EEEeeCcchhhhh
Q 030312 8 VFIWDMDETLILL 20 (179)
Q Consensus 8 VFIWDLDETiIiF 20 (179)
..|||||-|||=.
T Consensus 2 ~viFD~DGTLiDs 14 (197)
T TIGR01548 2 ALVLDMDGVMADV 14 (197)
T ss_pred ceEEecCceEEec
Confidence 3599999999933
No 25
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=43.82 E-value=13 Score=29.44 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=18.6
Q ss_pred EEEEeeCcchhhhhhhhhchh---hhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGT---FAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGs---yA~~~~ 33 (179)
+..|||+|.|||=...+..-. .+..||
T Consensus 5 ~~viFD~DGTL~d~~~~~~~a~~~~~~~~g 34 (221)
T PRK10563 5 EAVFFDCDGTLVDSEVICSRAYVTMFAEFG 34 (221)
T ss_pred CEEEECCCCCCCCChHHHHHHHHHHHHHcC
Confidence 577999999999876664333 334454
No 26
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=42.81 E-value=14 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=18.3
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~ 31 (179)
+..|||||.|||=.++...-.+++.
T Consensus 2 k~viFD~DGTL~d~~~~~~~~~~~~ 26 (224)
T TIGR02254 2 KTLLFDLDDTILDFQAAEALALRLL 26 (224)
T ss_pred CEEEEcCcCcccccchHHHHHHHHH
Confidence 4689999999998777655444443
No 27
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=42.43 E-value=13 Score=28.13 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=12.1
Q ss_pred EEeeCcchhhhhhh
Q 030312 9 FIWDMDETLILLKS 22 (179)
Q Consensus 9 FIWDLDETiIiF~S 22 (179)
.|||+|.||+--.+
T Consensus 1 v~fD~DGTL~~~~~ 14 (192)
T PF12710_consen 1 VIFDFDGTLTDSDS 14 (192)
T ss_dssp EEEESBTTTBSSHH
T ss_pred eEEecCcCeecCCC
Confidence 48999999998874
No 28
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=42.43 E-value=10 Score=29.79 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=15.0
Q ss_pred EEeeCcchhhhhhhhhchhhh
Q 030312 9 FIWDMDETLILLKSLLNGTFA 29 (179)
Q Consensus 9 FIWDLDETiIiF~SLLtGsyA 29 (179)
.|||||.||+=-.....-.+.
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~ 21 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFA 21 (205)
T ss_pred CeecCcCccccCHHHHHHHHH
Confidence 389999999866555555444
No 29
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=41.98 E-value=13 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.6
Q ss_pred EEEeeCcchhhhhhhhhch
Q 030312 8 VFIWDMDETLILLKSLLNG 26 (179)
Q Consensus 8 VFIWDLDETiIiF~SLLtG 26 (179)
+.|||||-||+=....+..
T Consensus 2 ~viFDlDGTL~ds~~~~~~ 20 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFL 20 (184)
T ss_pred eEEEeCCCCCCCCcccHHH
Confidence 6899999999955433333
No 30
>PRK11590 hypothetical protein; Provisional
Probab=41.24 E-value=17 Score=29.25 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.4
Q ss_pred ceEEEEeeCcchhh
Q 030312 5 LTKVFIWDMDETLI 18 (179)
Q Consensus 5 lerVFIWDLDETiI 18 (179)
-.++.|+|+|.||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 45789999999999
No 31
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=40.95 E-value=50 Score=26.82 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=26.2
Q ss_pred EEEEeeCcchhhhhhhhhchh---hhhhhCCCC-ChhH-HHHHHHHHHHHHHH
Q 030312 7 KVFIWDMDETLILLKSLLNGT---FAQSFNDLK-DADK-GVQIGRMWENHILN 54 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGs---yA~~~~~sK-D~~~-~v~LG~rmEemIf~ 54 (179)
+..|||||.|||=......-. ....+|... +... ...+|..+++++-.
T Consensus 13 k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 65 (229)
T PRK13226 13 RAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAV 65 (229)
T ss_pred CEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHH
Confidence 568999999998665544443 334454211 1111 11356666666543
No 32
>PLN02954 phosphoserine phosphatase
Probab=40.10 E-value=14 Score=29.25 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.0
Q ss_pred eEEEEeeCcchhhhhhhh
Q 030312 6 TKVFIWDMDETLILLKSL 23 (179)
Q Consensus 6 erVFIWDLDETiIiF~SL 23 (179)
.+++|+|||-||+--.++
T Consensus 12 ~k~viFDfDGTL~~~~~~ 29 (224)
T PLN02954 12 ADAVCFDVDSTVCVDEGI 29 (224)
T ss_pred CCEEEEeCCCcccchHHH
Confidence 368899999999987665
No 33
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=39.69 E-value=24 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=20.9
Q ss_pred CceEEEEeeCcchhhhhhhhhchhhhh
Q 030312 4 TLTKVFIWDMDETLILLKSLLNGTFAQ 30 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~SLLtGsyA~ 30 (179)
+-+||+.|++||-++++-++.-|--++
T Consensus 11 ~~~~i~g~t~DE~i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 11 EQPRILGLPLDEFLPGATLFGIGILSG 37 (95)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHHHHHh
Confidence 347899999999988887777665544
No 34
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=38.10 E-value=15 Score=31.49 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=19.3
Q ss_pred eEEEEeeCcchhhhhh-hhhchhhhhhh
Q 030312 6 TKVFIWDMDETLILLK-SLLNGTFAQSF 32 (179)
Q Consensus 6 erVFIWDLDETiIiF~-SLLtGsyA~~~ 32 (179)
-+..|||||.||+=.. .+..-.+.+.+
T Consensus 40 ~k~VIFDlDGTLvDS~~~~~~~a~~~~l 67 (286)
T PLN02779 40 PEALLFDCDGVLVETERDGHRVAFNDAF 67 (286)
T ss_pred CcEEEEeCceeEEccccHHHHHHHHHHH
Confidence 4678999999998777 66655444333
No 35
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=37.29 E-value=14 Score=29.24 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=10.2
Q ss_pred EEEeeCcchhhhh
Q 030312 8 VFIWDMDETLILL 20 (179)
Q Consensus 8 VFIWDLDETiIiF 20 (179)
.-|-|||||||=.
T Consensus 3 ~lvlDLDeTLi~~ 15 (162)
T TIGR02251 3 TLVLDLDETLVHS 15 (162)
T ss_pred EEEEcCCCCcCCC
Confidence 4577999999954
No 36
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=35.93 E-value=18 Score=29.98 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEEeeCcchhhhhhh
Q 030312 7 KVFIWDMDETLILLKS 22 (179)
Q Consensus 7 rVFIWDLDETiIiF~S 22 (179)
+..|||||-|||=+++
T Consensus 5 k~vIFDlDGTLiDs~~ 20 (267)
T PRK13478 5 QAVIFDWAGTTVDFGS 20 (267)
T ss_pred EEEEEcCCCCeecCCC
Confidence 5789999999998754
No 37
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=35.33 E-value=15 Score=28.50 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=9.5
Q ss_pred EEeeCcchhhh
Q 030312 9 FIWDMDETLIL 19 (179)
Q Consensus 9 FIWDLDETiIi 19 (179)
.|||||.|||=
T Consensus 1 viFD~DGTL~D 11 (213)
T TIGR01449 1 VLFDLDGTLVD 11 (213)
T ss_pred CeecCCCcccc
Confidence 38999999994
No 38
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=35.30 E-value=22 Score=29.07 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=18.5
Q ss_pred EEEEeeCcchhhhhhhhhchhhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~ 30 (179)
++.|+|||.||+=..+.+...+.+
T Consensus 11 k~iiFDlDGTL~D~~~~~~~a~~~ 34 (238)
T PRK10748 11 SALTFDLDDTLYDNRPVILRTEQE 34 (238)
T ss_pred eeEEEcCcccccCChHHHHHHHHH
Confidence 578999999999887776654443
No 39
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=35.16 E-value=51 Score=25.75 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=16.7
Q ss_pred EEEEeeCcchhhhhhhhhc---hhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLN---GTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLt---GsyA~~~~ 33 (179)
++.|||+|.||+=...... ..+++.++
T Consensus 7 ~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~ 36 (226)
T PRK13222 7 RAVAFDLDGTLVDSAPDLAAAVNAALAALG 36 (226)
T ss_pred cEEEEcCCcccccCHHHHHHHHHHHHHHCC
Confidence 3679999999993332222 24455565
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=34.61 E-value=15 Score=27.51 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.5
Q ss_pred EEeeCcchhhhhhhhh
Q 030312 9 FIWDMDETLILLKSLL 24 (179)
Q Consensus 9 FIWDLDETiIiF~SLL 24 (179)
.|||||.|||=..+..
T Consensus 2 vlFDlDgtLv~~~~~~ 17 (183)
T TIGR01509 2 ILFDLDGVLVDTSSAI 17 (183)
T ss_pred eeeccCCceechHHHH
Confidence 6899999999887753
No 41
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=34.43 E-value=19 Score=28.33 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.1
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
+++|+|||.||+-..+.- ..+++++
T Consensus 15 k~iiFD~DGTL~~~~~~~--~l~~~~g 39 (219)
T TIGR00338 15 KLVVFDMDSTLINAETID--EIAKIAG 39 (219)
T ss_pred CEEEEeCcccCCCchHHH--HHHHHhC
Confidence 589999999999876642 3344554
No 42
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.39 E-value=45 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhh
Q 030312 36 KDADKGVQIGRMWENHILNVCDECFF 61 (179)
Q Consensus 36 KD~~~~v~LG~rmEemIf~laD~hfF 61 (179)
++|.++.++..++.+---+|||.|+.
T Consensus 33 ~NPlkAqR~AE~~n~~~~~l~~~~~~ 58 (60)
T PF07026_consen 33 TNPLKAQRLAEELNSKQVNLCDEHLL 58 (60)
T ss_pred cCHHHHHHHHHHHHhhHhhhhhhhcc
Confidence 89999999999999999999999985
No 43
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=34.39 E-value=19 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=20.9
Q ss_pred CceEEEEeeCcchhhhhhhhhchhhh---hhhC
Q 030312 4 TLTKVFIWDMDETLILLKSLLNGTFA---QSFN 33 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~SLLtGsyA---~~~~ 33 (179)
.+..+.|||||.||+=........+. ..++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g 43 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELG 43 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcC
Confidence 35668999999999876655555444 4554
No 44
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=34.25 E-value=21 Score=26.88 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=18.1
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
-++|+|+|.|||=..+.. ..+..++
T Consensus 2 ~~iiFD~dgTL~~~~~~~--~~~~~~~ 26 (188)
T TIGR01489 2 VVVVSDFDGTITLNDSDD--WITDKFG 26 (188)
T ss_pred eEEEEeCCCcccCCCchH--HHHHhcC
Confidence 378999999999887754 3445553
No 45
>PRK09449 dUMP phosphatase; Provisional
Probab=33.66 E-value=22 Score=28.12 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.8
Q ss_pred EEEEeeCcchhh
Q 030312 7 KVFIWDMDETLI 18 (179)
Q Consensus 7 rVFIWDLDETiI 18 (179)
+..|||||-|||
T Consensus 4 k~iiFDlDGTLi 15 (224)
T PRK09449 4 DWILFDADETLF 15 (224)
T ss_pred cEEEEcCCCchh
Confidence 467999999999
No 46
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=33.57 E-value=24 Score=27.41 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=11.2
Q ss_pred EEEEeeCcchhh
Q 030312 7 KVFIWDMDETLI 18 (179)
Q Consensus 7 rVFIWDLDETiI 18 (179)
+++|+|||-||+
T Consensus 2 ~~v~FD~DGTL~ 13 (205)
T PRK13582 2 EIVCLDLEGVLV 13 (205)
T ss_pred eEEEEeCCCCCh
Confidence 689999999999
No 47
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=33.29 E-value=16 Score=28.34 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.6
Q ss_pred EEeeCcchhhhhhhh
Q 030312 9 FIWDMDETLILLKSL 23 (179)
Q Consensus 9 FIWDLDETiIiF~SL 23 (179)
.++|+|+|||-.+|+
T Consensus 2 a~FD~DgTL~~~~s~ 16 (202)
T TIGR01490 2 AFFDFDGTLTAKDTL 16 (202)
T ss_pred eEEccCCCCCCCchH
Confidence 589999999987763
No 48
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=33.21 E-value=18 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=14.7
Q ss_pred EEeeCcchhhhhhhhhchhh
Q 030312 9 FIWDMDETLILLKSLLNGTF 28 (179)
Q Consensus 9 FIWDLDETiIiF~SLLtGsy 28 (179)
.|||+|.||+=......-.+
T Consensus 2 iiFD~DGTL~ds~~~~~~~~ 21 (185)
T TIGR01990 2 VIFDLDGVITDTAEYHYLAW 21 (185)
T ss_pred eEEcCCCccccChHHHHHHH
Confidence 59999999997666554433
No 49
>PRK11587 putative phosphatase; Provisional
Probab=33.15 E-value=20 Score=28.61 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=16.2
Q ss_pred EEEEeeCcchhhhhhhhhchhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFA 29 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA 29 (179)
+..|||||-|||=........+.
T Consensus 4 k~viFDlDGTL~Ds~~~~~~a~~ 26 (218)
T PRK11587 4 KGFLFDLDGTLVDSLPAVERAWS 26 (218)
T ss_pred CEEEEcCCCCcCcCHHHHHHHHH
Confidence 45799999999876655544333
No 50
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=33.02 E-value=20 Score=29.44 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=26.8
Q ss_pred EEEEeeCcchhhhhhhhhch---hhhhhhCCCCChhHHHH-HHHHHHHHHHHhhh
Q 030312 7 KVFIWDMDETLILLKSLLNG---TFAQSFNDLKDADKGVQ-IGRMWENHILNVCD 57 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtG---syA~~~~~sKD~~~~v~-LG~rmEemIf~laD 57 (179)
+.+|||||-|||=+-.+-.- ..+.+||-.-+.+...+ .|...-+.|-.++.
T Consensus 3 ~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 57 (221)
T COG0637 3 KAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRK 57 (221)
T ss_pred cEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 57899999999865444333 44555652223322222 35444444444443
No 51
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=32.87 E-value=18 Score=27.15 Aligned_cols=15 Identities=47% Similarity=0.541 Sum_probs=12.8
Q ss_pred EEeeCcchhhhhhhh
Q 030312 9 FIWDMDETLILLKSL 23 (179)
Q Consensus 9 FIWDLDETiIiF~SL 23 (179)
+|+|||.||+--.|+
T Consensus 2 ~~fD~DgTl~~~~s~ 16 (177)
T TIGR01488 2 AIFDFDGTLTRQDSL 16 (177)
T ss_pred EEecCccccccchhh
Confidence 789999999987763
No 52
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=32.77 E-value=25 Score=29.03 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.1
Q ss_pred EEEEeeCcchhhhhhhhhchhhh
Q 030312 7 KVFIWDMDETLILLKSLLNGTFA 29 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA 29 (179)
+..|||||-|||=......-.+.
T Consensus 23 k~viFDlDGTLiDs~~~~~~a~~ 45 (248)
T PLN02770 23 EAVLFDVDGTLCDSDPLHYYAFR 45 (248)
T ss_pred CEEEEcCCCccCcCHHHHHHHHH
Confidence 56899999999977765544443
No 53
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=32.11 E-value=23 Score=30.10 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=26.6
Q ss_pred EEEEeeCcchhhhhh-hhhc---hhhhhhhCCCCChhHH--HHHHHHHHHHHHHh
Q 030312 7 KVFIWDMDETLILLK-SLLN---GTFAQSFNDLKDADKG--VQIGRMWENHILNV 55 (179)
Q Consensus 7 rVFIWDLDETiIiF~-SLLt---GsyA~~~~~sKD~~~~--v~LG~rmEemIf~l 55 (179)
+..|||||-|||=.. .+.. -..+..+|....+... ...|+.+.+++..+
T Consensus 25 k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l 79 (260)
T PLN03243 25 LGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEV 79 (260)
T ss_pred eEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 468999999999653 2222 2444556522223222 23466666555444
No 54
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=31.73 E-value=85 Score=24.35 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEeeCcchhhhhhhhhchhhhhhhC
Q 030312 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
++.|+|||.|||=+.++ .-.+.+.++
T Consensus 2 k~viFD~dgTLiD~~~~-~~~~~~~~~ 27 (198)
T TIGR01428 2 KALVFDVYGTLFDVHSV-VERFAELYG 27 (198)
T ss_pred cEEEEeCCCcCccHHHH-HHHHHHHhC
Confidence 46799999999988875 334555553
No 55
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=31.62 E-value=25 Score=26.62 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=17.8
Q ss_pred EEEeeCcchhhhhhhhhchhhhhh
Q 030312 8 VFIWDMDETLILLKSLLNGTFAQS 31 (179)
Q Consensus 8 VFIWDLDETiIiF~SLLtGsyA~~ 31 (179)
+.|||||.|||=+.......+...
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~ 24 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAI 24 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHh
Confidence 368999999998887666554443
No 56
>PLN02940 riboflavin kinase
Probab=30.72 E-value=57 Score=29.40 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=19.6
Q ss_pred ceEEEEeeCcchhhhhhhhhchhhh---hhhC
Q 030312 5 LTKVFIWDMDETLILLKSLLNGTFA---QSFN 33 (179)
Q Consensus 5 lerVFIWDLDETiIiF~SLLtGsyA---~~~~ 33 (179)
+-+..|||||.|||=......-.+. ++++
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G 41 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYG 41 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcC
Confidence 3466899999999966655544433 4554
No 57
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=30.54 E-value=24 Score=27.44 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=14.3
Q ss_pred EEEEeeCcchhhhhhhhhch
Q 030312 7 KVFIWDMDETLILLKSLLNG 26 (179)
Q Consensus 7 rVFIWDLDETiIiF~SLLtG 26 (179)
++.|+|||.|||=+......
T Consensus 1 k~viFDlDGTL~d~~~~~~~ 20 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGE 20 (203)
T ss_pred CeEEEecCCceeeeCCCHHH
Confidence 46799999999865444333
No 58
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=30.27 E-value=20 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.3
Q ss_pred EEEeeCcchhhhhhhhhc
Q 030312 8 VFIWDMDETLILLKSLLN 25 (179)
Q Consensus 8 VFIWDLDETiIiF~SLLt 25 (179)
++|.|+|.|++--++...
T Consensus 1 ~~vfD~D~tl~~~~~~~~ 18 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA 18 (139)
T ss_pred CeEEccCCceEccCcccc
Confidence 478999999988876543
No 59
>PRK11779 sbcB exonuclease I; Provisional
Probab=29.77 E-value=82 Score=30.04 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.1
Q ss_pred cccccccChHHHHHHHHHH
Q 030312 145 QGLQNIFDKEMLRVWDELY 163 (179)
Q Consensus 145 ~~l~~ll~~~~r~~w~~L~ 163 (179)
.|....|+++++..|.+-+
T Consensus 411 rn~p~~L~~~e~~~w~~~~ 429 (476)
T PRK11779 411 RNFPETLDDEEQQRWLEHR 429 (476)
T ss_pred ccChhhCCHHHHHHHHHHH
Confidence 4778888999999996655
No 60
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=28.77 E-value=25 Score=30.18 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=17.7
Q ss_pred eEEEEeeCcchhhhhhhhhch---hhhhhhC
Q 030312 6 TKVFIWDMDETLILLKSLLNG---TFAQSFN 33 (179)
Q Consensus 6 erVFIWDLDETiIiF~SLLtG---syA~~~~ 33 (179)
-+.+|||||-|||=......- ..++.|+
T Consensus 62 ~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G 92 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLPTVVAIANAHAPDFG 92 (273)
T ss_pred cCEEEECCcCccccCHHHHHHHHHHHHHHCC
Confidence 356899999999854333322 3445565
No 61
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=27.30 E-value=31 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.8
Q ss_pred EEEEeeCcchhhhhhh
Q 030312 7 KVFIWDMDETLILLKS 22 (179)
Q Consensus 7 rVFIWDLDETiIiF~S 22 (179)
-..|.|||||++=..-
T Consensus 64 ~aViFDlDgTLlDSs~ 79 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSP 79 (237)
T ss_pred eEEEEeCCCccccCcH
Confidence 3789999999764433
No 62
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.42 E-value=97 Score=16.66 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=17.3
Q ss_pred hhhhhhchhhhhhhCCCCChhHHHHHHHHHHH
Q 030312 19 LLKSLLNGTFAQSFNDLKDADKGVQIGRMWEN 50 (179)
Q Consensus 19 iF~SLLtGsyA~~~~~sKD~~~~v~LG~rmEe 50 (179)
.|+++++| |++. +++.++.++=..|.+
T Consensus 2 ~~n~li~~-~~~~----~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDG-LCKA----GRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHH-HHHC----CCHHHHHHHHHHHHH
Confidence 46677754 5554 788888877555543
No 63
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=25.33 E-value=46 Score=21.15 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=6.3
Q ss_pred EEEEeeCcc
Q 030312 7 KVFIWDMDE 15 (179)
Q Consensus 7 rVFIWDLDE 15 (179)
||+|||.|+
T Consensus 2 rlav~d~~~ 10 (35)
T PF04068_consen 2 RLAVWDFDQ 10 (35)
T ss_dssp EEEEE-CCC
T ss_pred EEEEEEcCC
Confidence 788888875
No 64
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=25.14 E-value=34 Score=27.49 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.7
Q ss_pred eEEEEeeCcchhhhhhhhh
Q 030312 6 TKVFIWDMDETLILLKSLL 24 (179)
Q Consensus 6 erVFIWDLDETiIiF~SLL 24 (179)
..++|+|+|-||+-..++.
T Consensus 3 ~~~vifDfDgTi~~~d~~~ 21 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII 21 (219)
T ss_pred CcEEEEcCCCCCCcchhhH
Confidence 4589999999999777654
No 65
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=24.79 E-value=1.3e+02 Score=28.11 Aligned_cols=62 Identities=16% Similarity=0.344 Sum_probs=41.1
Q ss_pred CceEEEEeeCcchhhhhhhhhchhhhhhhC------------CCCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Q 030312 4 TLTKVFIWDMDETLILLKSLLNGTFAQSFN------------DLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTP 71 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~SLLtGsyA~~~~------------~sKD~~~~v~LG~rmEemIf~laD~hfFfndlEecdqv 71 (179)
.+.|.-+.|||..+| +.+++|.+.+.|. .+..-..|-..|....+-|.+..+ ..+|+||.+
T Consensus 58 ~~pRav~iD~Ep~vi--~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir-----~~~E~cd~l 130 (431)
T cd02188 58 YVPRAILIDLEPRVI--NSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIID-----READGSDSL 130 (431)
T ss_pred cCCcceeccCCcchh--hhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCc
Confidence 346777889999986 5677777654443 112333455567777777777776 466889875
Q ss_pred c
Q 030312 72 F 72 (179)
Q Consensus 72 h 72 (179)
.
T Consensus 131 ~ 131 (431)
T cd02188 131 E 131 (431)
T ss_pred c
Confidence 4
No 66
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=23.36 E-value=49 Score=27.89 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.1
Q ss_pred eEEEEeeCcchhhhhhhh
Q 030312 6 TKVFIWDMDETLILLKSL 23 (179)
Q Consensus 6 erVFIWDLDETiIiF~SL 23 (179)
..+-|.|+|||++ .++-
T Consensus 72 ~~avv~DIDeTvL-sn~~ 88 (229)
T PF03767_consen 72 PPAVVFDIDETVL-SNSP 88 (229)
T ss_dssp EEEEEEESBTTTE-EHHH
T ss_pred CcEEEEECCcccc-cCHH
Confidence 5678999999987 5543
No 67
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=23.23 E-value=30 Score=27.18 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=14.9
Q ss_pred chhhhhhhhhchhhhhhhC-CCCCh
Q 030312 15 ETLILLKSLLNGTFAQSFN-DLKDA 38 (179)
Q Consensus 15 ETiIiF~SLLtGsyA~~~~-~sKD~ 38 (179)
||+|||.|+|. |...|+ ...||
T Consensus 46 ET~vilds~Lg--~v~~~Dk~~~D~ 68 (103)
T PF08994_consen 46 ETFVILDSFLG--FVDKFDKVLTDP 68 (103)
T ss_dssp HHHHHHHHHH---HHHHHHHH---H
T ss_pred hHHHHHHHHHh--hHHhhhhhccch
Confidence 89999999994 777776 44555
No 68
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.14 E-value=50 Score=26.26 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=17.3
Q ss_pred eEEEEeeCcchhhhhhhhhchhh
Q 030312 6 TKVFIWDMDETLILLKSLLNGTF 28 (179)
Q Consensus 6 erVFIWDLDETiIiF~SLLtGsy 28 (179)
-+..|||+|.||+=++......+
T Consensus 7 ~k~iiFD~DGTL~d~~~~~~~a~ 29 (222)
T PRK10826 7 ILAAIFDMDGLLIDSEPLWDRAE 29 (222)
T ss_pred CcEEEEcCCCCCCcCHHHHHHHH
Confidence 35679999999997776665543
No 69
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=22.94 E-value=43 Score=26.27 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.4
Q ss_pred EEEEeeCcchhhhhh
Q 030312 7 KVFIWDMDETLILLK 21 (179)
Q Consensus 7 rVFIWDLDETiIiF~ 21 (179)
++.|+|||.||+=..
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 478999999999543
No 70
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=22.93 E-value=38 Score=27.83 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.0
Q ss_pred ceEEEEeeCcchhhhhhhhh
Q 030312 5 LTKVFIWDMDETLILLKSLL 24 (179)
Q Consensus 5 lerVFIWDLDETiIiF~SLL 24 (179)
-+++-++|+|+||+-..|+.
T Consensus 4 ~~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred cCcEEEEcCCCCCccCccHH
Confidence 46899999999998765554
No 71
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=22.51 E-value=1e+02 Score=24.05 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=26.5
Q ss_pred eCcchhhhhhhhhchhhhhhhCCCCChhHHHHHHHHHHHHHH
Q 030312 12 DMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHIL 53 (179)
Q Consensus 12 DLDETiIiF~SLLtGsyA~~~~~sKD~~~~v~LG~rmEemIf 53 (179)
|-+++-+||.|+|.|-.--.+ .+|+....+|-+.--.+++
T Consensus 87 dv~~~a~il~s~l~GL~~~~~--~~~~~e~~~l~~~ai~ifL 126 (131)
T PF08360_consen 87 DVEELAYILMSLLDGLSQWYY--EKDKEELEALYRKAIDIFL 126 (131)
T ss_dssp THHHHHHHHHHHHHHHHHTTT--SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHH
Confidence 556788999999999885444 4777766666555444433
No 72
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=22.28 E-value=42 Score=29.86 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.5
Q ss_pred eEEEEeeCcchhhhhhh
Q 030312 6 TKVFIWDMDETLILLKS 22 (179)
Q Consensus 6 erVFIWDLDETiIiF~S 22 (179)
.|++|+|||-|+|.-.+
T Consensus 110 ~~LvvfDmDGTLI~~e~ 126 (322)
T PRK11133 110 PGLLVMDMDSTAIQIEC 126 (322)
T ss_pred CCEEEEECCCCCcchHH
Confidence 47899999999994433
No 73
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.07 E-value=1.2e+02 Score=27.88 Aligned_cols=12 Identities=33% Similarity=0.185 Sum_probs=8.5
Q ss_pred hHHH-HHHHHHHH
Q 030312 104 LKKI-AYRHRAIA 115 (179)
Q Consensus 104 mrKL-A~ryR~Ik 115 (179)
.+|+ |.|||.=|
T Consensus 234 qnk~AAtRYRqKk 246 (294)
T KOG4571|consen 234 QNKAAATRYRQKK 246 (294)
T ss_pred HhHHHHHHHHHHH
Confidence 4777 88888643
No 74
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=21.58 E-value=89 Score=31.20 Aligned_cols=55 Identities=11% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCC-CCchhhHHHHHHHHHHHHHhhhhhhhhcccchhhhHHHhhcccccccccccccChH------HHH
Q 030312 85 LSDYEFDRDGLCPP-FDDLSLKKIAYRHRAIAHKYKEVFYSISQSHFSLVYYLVKCSSLFFQGLQNIFDKE------MLR 157 (179)
Q Consensus 85 LS~y~F~~dgf~~p-~~~~~mrKLA~ryR~Ike~Y~~~~~~~~~~~~~~~~~~~k~~~~y~~~l~~ll~~~------~r~ 157 (179)
.|...|.++||-.. .+..+||-++|--| +.+- .-|.+-|+|. .|+
T Consensus 500 FsglkFkqng~L~~iPs~t~m~~m~~~~R---e~fL-------------------------~vvR~ALEP~astP~~~RR 551 (670)
T PRK15376 500 FSGLKFKQNSFLSTVPSVTNMHSMHFDAR---ETFL-------------------------GVIRKALEPDTSTPFPVRR 551 (670)
T ss_pred CCcceeccCCceeecchhhhhhhcccchH---HHHH-------------------------HHHHhhcCcccCCcchHHH
Confidence 67888999998543 35779999999777 3332 3455666654 899
Q ss_pred HHHHHHhhhH
Q 030312 158 VWDELYDMTD 167 (179)
Q Consensus 158 ~w~~L~~~~e 167 (179)
+++.||++|=
T Consensus 552 aFd~LRaeIL 561 (670)
T PRK15376 552 AFDGLRAEIL 561 (670)
T ss_pred HHHHHHhhcC
Confidence 9999999873
No 75
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=21.56 E-value=88 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.6
Q ss_pred EeeCcchhhhhhhhhchhhhhhhC
Q 030312 10 IWDMDETLILLKSLLNGTFAQSFN 33 (179)
Q Consensus 10 IWDLDETiIiF~SLLtGsyA~~~~ 33 (179)
.=|||+||.=|.+.+.--+.+.|+
T Consensus 6 ~iDiDgVLad~~~~~~~~~n~~~~ 29 (191)
T PF06941_consen 6 AIDIDGVLADFNSAFIEWFNEEFG 29 (191)
T ss_dssp EEESBTTTB-HHHHHHHHHHHHTT
T ss_pred EEECCCCCcccHHHHHHHHHHHcC
Confidence 349999999988877777777786
No 76
>PF06275 DUF1031: Protein of unknown function (DUF1031); InterPro: IPR009376 This entry is represented by Bacteriophage r1t, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.36 E-value=94 Score=23.58 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccchhhhHHHhhcccccccccccccChHHHHHHHHHHhhh-HHhhh
Q 030312 105 KKIAYRHRAIAHKYKEVFYSISQSHFSLVYYLVKCSSLFFQGLQNIFDKEMLRVWDELYDMT-DEYTD 171 (179)
Q Consensus 105 rKLA~ryR~Ike~Y~~~~~~~~~~~~~~~~~~~k~~~~y~~~l~~ll~~~~r~~w~~L~~~~-e~~TD 171 (179)
-.|.--|+.|+.+||. .+.-.|.+|+.-+ +++|.
T Consensus 40 HELsqlYlDI~nkyNh---------------------------------sKqMkW~~Lykil~~~Lt~ 74 (80)
T PF06275_consen 40 HELSQLYLDICNKYNH---------------------------------SKQMKWNQLYKILDEELTE 74 (80)
T ss_pred HhHHHHHHHHHHhhcc---------------------------------cccCcHHHHHHHHHHHhcc
Confidence 3567789999999994 1233699999988 66664
No 77
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=20.13 E-value=52 Score=30.06 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.5
Q ss_pred CceEEEEeeCcchhhhhhh
Q 030312 4 TLTKVFIWDMDETLILLKS 22 (179)
Q Consensus 4 ~lerVFIWDLDETiIiF~S 22 (179)
++.+|.+.|||.|||--+.
T Consensus 126 ~~~~~i~~D~D~TL~~~~~ 144 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE 144 (303)
T ss_pred eeccEEEEecCCCccCCCC
Confidence 4578999999999986654
Done!