BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030313
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PJD|A Chain A, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
 pdb|3PJD|B Chain B, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
          Length = 270

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 101 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 159

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 160 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 214


>pdb|3PJF|A Chain A, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
 pdb|3PJF|B Chain B, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
          Length = 270

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 101 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 159

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 160 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 214


>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
 pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
          Length = 270

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 101 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 159

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 160 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 214


>pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad And Benzo-Diazaborine
 pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad And Benzo-Diazaborine
 pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad And Thieno-Diazaborine
 pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad And Thieno-Diazaborine
 pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad
 pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad
 pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad
 pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
           Bound Nad
 pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
           Reductase In Complex With Nad And Triclosan
 pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
           Reductase In Complex With Nad And Triclosan
 pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
           Reductase In Complex With Nad And Triclosan
 pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
           Reductase In Complex With Nad And Triclosan
 pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
 pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
          Length = 261

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 100 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 158

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 159 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 213


>pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
 pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
           Triclosan
          Length = 265

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 104 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 162

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 163 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 217


>pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
           Complex
 pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
           Complex
 pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
 pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
 pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
 pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
 pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
           Bound Benzamide Inhibitor
 pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
           Bound Benzamide Inhibitor
 pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
           Bound Acrylamide Inhibitor
 pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
           Bound Acrylamide Inhibitor
 pdb|1MFP|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
 pdb|1MFP|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
 pdb|2FHS|A Chain A, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
           Reductase From Escherichia Coli
 pdb|2FHS|B Chain B, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
           Reductase From Escherichia Coli
          Length = 262

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 30  QSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKG--SYRYL 87
              Y+  V R+  +K  H + +  +VA A A  ++L  G ++    YLG  +   +Y  +
Sbjct: 101 DGDYVNAVTRE-GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVM 159

Query: 88  AWVSYLLDQMVVYIAFGTNSAAVEHS--------VLALSGMKEFQWM-KWCNKFT 133
                 L+  V Y+A       V  +         LA SG+K+F+ M   C   T
Sbjct: 160 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT 214


>pdb|2GTH|A Chain A, Crystal Structure Of The Wildtype Mhv Coronavirus
           Non-Structural Protein Nsp15
          Length = 370

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 79  NSKGSYRYLAWVSYLLDQMVVYIAFGTNSAAVEHSVLALSGMKEFQWMKWCNK 131
           NS  S      +  LLD  V  I    N   V   V      K+FQ+M WCN+
Sbjct: 313 NSGSSKSVCTVIDLLLDDFV-DIVKSLNLKCVSKVVNVNVDFKDFQFMLWCNE 364


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,800
Number of Sequences: 62578
Number of extensions: 151716
Number of successful extensions: 312
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)