Query 030313
Match_columns 179
No_of_seqs 125 out of 438
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 11.3 3E+02 0.01 17.0 3.6 29 43-71 26-54 (59)
2 2yfv_C SCM3, KLLA0F05115P; cel 9.4 91 0.0031 19.9 0.7 18 122-139 35-52 (63)
3 2y69_J Cytochrome C oxidase po 7.2 4.9E+02 0.017 17.1 3.6 31 41-71 45-75 (80)
4 3m03_A ORC6, origin recognitio 6.6 1.8E+02 0.0061 19.9 1.2 22 117-138 72-93 (95)
5 2e2s_A Agelenin; cystine knot, 6.5 85 0.0029 17.6 -0.4 10 129-138 3-12 (36)
6 2lg4_A Aurelin; antimicrobial 8.8 1.1E+02 0.0038 17.7 0.0 13 127-139 10-22 (40)
7 1eci_A Ectatomin; pore-forming 6.3 1.4E+02 0.0047 16.6 0.4 12 123-134 6-17 (37)
8 1jb0_X Photosystem I subunit P 5.0 4.2E+02 0.014 14.7 1.9 13 51-63 18-30 (35)
9 3qoe_A Heterocyst differentiat 4.3 2E+02 0.0069 23.2 0.3 14 93-106 18-31 (302)
10 1wib_A 60S ribosomal protein L 3.6 3E+02 0.01 18.6 0.7 16 119-134 39-54 (92)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=11.25 E-value=3e+02 Score=17.05 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=23.5
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 030313 43 YKELHALGALVYVASAAAGYNLLQLGRSV 71 (179)
Q Consensus 43 f~~~~af~ylv~a~~i~~~Ysllql~~~~ 71 (179)
=+|.--|++..+..+++.+|++-.+....
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~~~ 54 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667789999999999999998887643
No 2
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=9.44 E-value=91 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=14.7
Q ss_pred chhhhhhhhhhhhhhhhH
Q 030313 122 EFQWMKWCNKFTRFCFQI 139 (179)
Q Consensus 122 ~~~W~~iC~~~~~FC~~~ 139 (179)
+-.|..||..|++|-++.
T Consensus 35 K~~w~~Ii~KY~~~edqg 52 (63)
T 2yfv_C 35 KRVWSQIIQKYESIDNQG 52 (63)
T ss_dssp HHHHHHHHHHHHSGGGSS
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 457999999999987653
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.25 E-value=4.9e+02 Score=17.13 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=24.7
Q ss_pred eeecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 030313 41 ITYKELHALGALVYVASAAAGYNLLQLGRSV 71 (179)
Q Consensus 41 ~~f~~~~af~ylv~a~~i~~~Ysllql~~~~ 71 (179)
-.=+|.--|.+..+..+++.+|++-++....
T Consensus 45 ggrsd~~Ly~~t~~l~~~G~~~~ly~l~~~~ 75 (80)
T 2y69_J 45 GGATDNILYRVTMTLCLGGTLYSLYCLGWAS 75 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777889999999999999998886643
No 4
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=6.61 E-value=1.8e+02 Score=19.95 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=16.7
Q ss_pred hhcccchhhhhhhhhhhhhhhh
Q 030313 117 LSGMKEFQWMKWCNKFTRFCFQ 138 (179)
Q Consensus 117 ~~G~~~~~W~~iC~~~~~FC~~ 138 (179)
..|.+..+|..+|.++.+|=.+
T Consensus 72 ~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 72 TSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHh
Confidence 3577788999999988876443
No 5
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=6.48 E-value=85 Score=17.62 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=6.4
Q ss_pred hhhhhhhhhh
Q 030313 129 CNKFTRFCFQ 138 (179)
Q Consensus 129 C~~~~~FC~~ 138 (179)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 5566777763
No 6
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=8.82 E-value=1.1e+02 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhhH
Q 030313 127 KWCNKFTRFCFQI 139 (179)
Q Consensus 127 ~iC~~~~~FC~~~ 139 (179)
.+|.+|..||+..
T Consensus 10 h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 10 HICESFKSFCKDS 22 (40)
Confidence 5799999999876
No 7
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=6.31 E-value=1.4e+02 Score=16.64 Aligned_cols=12 Identities=17% Similarity=0.399 Sum_probs=8.3
Q ss_pred hhhhhhhhhhhh
Q 030313 123 FQWMKWCNKFTR 134 (179)
Q Consensus 123 ~~W~~iC~~~~~ 134 (179)
-.|..+|.....
T Consensus 6 kiweticpt~~~ 17 (37)
T 1eci_A 6 KIWETVCPTVEP 17 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhCcchHH
Confidence 358888876654
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.04 E-value=4.2e+02 Score=14.68 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 030313 51 ALVYVASAAAGYN 63 (179)
Q Consensus 51 ylv~a~~i~~~Ys 63 (179)
.++++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788898888874
No 9
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.30 E-value=2e+02 Score=23.22 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=12.0
Q ss_pred hHhHHHHHHHHHhh
Q 030313 93 LLDQMVVYIAFGTN 106 (179)
Q Consensus 93 ~~Dqv~ayLl~sa~ 106 (179)
.+||++.||-+||-
T Consensus 18 AmDqimlyLAFsAm 31 (302)
T 3qoe_A 18 AMDQIMLYLAFSAM 31 (302)
T ss_dssp HHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999988763
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=3.65 E-value=3e+02 Score=18.63 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=10.8
Q ss_pred cccchhhhhhhhhhhh
Q 030313 119 GMKEFQWMKWCNKFTR 134 (179)
Q Consensus 119 G~~~~~W~~iC~~~~~ 134 (179)
|...++.+++|..+++
T Consensus 39 G~~Glni~~f~k~fn~ 54 (92)
T 1wib_A 39 GPLGLSPKKVGDDIAK 54 (92)
T ss_dssp TTTCSCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH
Confidence 4455677788877764
Done!