Query 030313
Match_columns 179
No_of_seqs 125 out of 438
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 19:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrza_ a.7.10.1 (A:) Glycogen 10.5 62 0.0045 19.1 1.7 20 121-142 40-59 (66)
2 d1jb0x_ f.23.20.1 (X:) Subunit 4.8 2.2E+02 0.016 13.6 1.9 14 51-64 12-25 (29)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 4.4 3E+02 0.022 16.0 2.8 18 94-111 31-48 (69)
4 d2np5a1 a.4.1.9 (A:9-77) Trans 3.4 3.1E+02 0.022 14.8 2.2 23 111-133 10-32 (69)
5 d3cx5e2 f.23.12.1 (E:31-86) Ir 3.2 4.6E+02 0.033 14.6 2.8 17 96-112 23-39 (56)
6 d1bdsa_ g.9.1.1 (A:) BDs-I def 3.1 1.1E+02 0.0078 16.1 -0.3 7 123-129 33-39 (43)
7 d1oede_ f.36.1.1 (E:) Acetylch 2.9 5.3E+02 0.039 17.5 3.5 15 123-137 220-234 (260)
8 d2cchb2 a.74.1.1 (B:309-432) C 2.6 3.5E+02 0.025 16.9 2.0 85 89-175 24-112 (124)
9 d2id3a1 a.4.1.9 (A:13-80) Puta 2.6 4E+02 0.029 14.3 2.0 23 111-133 15-37 (68)
10 d3beca2 e.3.1.1 (A:4-262) Peni 2.5 5.8E+02 0.042 17.9 3.3 22 93-114 96-117 (259)
No 1
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=10.48 E-value=62 Score=19.06 Aligned_cols=20 Identities=25% Similarity=0.821 Sum_probs=14.6
Q ss_pred cchhhhhhhhhhhhhhhhHHHH
Q 030313 121 KEFQWMKWCNKFTRFCFQIGGA 142 (179)
Q Consensus 121 ~~~~W~~iC~~~~~FC~~~~~S 142 (179)
.+-.|. |..|.-+|.|+.-+
T Consensus 40 e~r~WF--c~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 40 EHRTWF--CARYAWYCQQMMQA 59 (66)
T ss_dssp HHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHH
Confidence 344564 99999999987643
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.81 E-value=2.2e+02 Score=13.60 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 030313 51 ALVYVASAAAGYNL 64 (179)
Q Consensus 51 ylv~a~~i~~~Ysl 64 (179)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777777754
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.39 E-value=3e+02 Score=16.04 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHhhhhHHH
Q 030313 94 LDQMVVYIAFGTNSAAVE 111 (179)
Q Consensus 94 ~Dqv~ayLl~sa~sAA~~ 111 (179)
..+.+.|++..+++.+.+
T Consensus 31 ~Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 31 ARKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhceehhhhhhhHHHHHH
Confidence 346899988877666554
No 4
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.39 E-value=3.1e+02 Score=14.81 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=16.5
Q ss_pred HHHHHHhhcccchhhhhhhhhhh
Q 030313 111 EHSVLALSGMKEFQWMKWCNKFT 133 (179)
Q Consensus 111 ~v~~l~~~G~~~~~W~~iC~~~~ 133 (179)
+.-.+.++|-.++...++|...|
T Consensus 10 a~~l~~~~G~~~~ti~~Ia~~ag 32 (69)
T d2np5a1 10 LFDVAAESGLEGASVREVAKRAG 32 (69)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHT
T ss_pred HHHHHHHhCccccCHHHHHHHhC
Confidence 34567788888888888886443
No 5
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.17 E-value=4.6e+02 Score=14.61 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhHHHH
Q 030313 96 QMVVYIAFGTNSAAVEH 112 (179)
Q Consensus 96 qv~ayLl~sa~sAA~~v 112 (179)
+.+.|++..+.+...+.
T Consensus 23 r~fsY~mvGs~g~~~a~ 39 (56)
T d3cx5e2 23 RSYAYFMVGAMGLLSSA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeehhHHHHHH
Confidence 57889988776665543
No 6
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.07 E-value=1.1e+02 Score=16.08 Aligned_cols=7 Identities=29% Similarity=1.374 Sum_probs=4.7
Q ss_pred hhhhhhh
Q 030313 123 FQWMKWC 129 (179)
Q Consensus 123 ~~W~~iC 129 (179)
..|+++|
T Consensus 33 ykwpnic 39 (43)
T d1bdsa_ 33 YKWPNIC 39 (43)
T ss_dssp EETTEEE
T ss_pred ccCCccc
Confidence 4577776
No 7
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.90 E-value=5.3e+02 Score=17.53 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=7.2
Q ss_pred hhhhhhhhhhhhhhh
Q 030313 123 FQWMKWCNKFTRFCF 137 (179)
Q Consensus 123 ~~W~~iC~~~~~FC~ 137 (179)
.+|..+-...||+|-
T Consensus 220 ~eW~~vA~viDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKVIDKACF 234 (260)
T ss_dssp ------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468888888898774
No 8
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.64 E-value=3.5e+02 Score=16.91 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=36.4
Q ss_pred hHHHhHhHHHH-H-HHH--HhhhhHHHHHHHHhhcccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030313 89 WVSYLLDQMVV-Y-IAF--GTNSAAVEHSVLALSGMKEFQWMKWCNKFTRFCFQIGGALVSGYAACALMVLATSISAFNL 164 (179)
Q Consensus 89 ~~~f~~Dqv~a-y-Ll~--sa~sAA~~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Si~~sf~A~~~~~~~s~iSa~~L 164 (179)
.-.+++|..+. | -++ ..+-=|++.-+++++......|++--..+.++-..--..++-.+.-...-.-.. .--.+
T Consensus 24 la~Yl~ElsLl~~~~~l~~~PS~lAaaai~lar~~l~~~~W~~~L~~~t~y~~~~l~~c~~~L~~~~~~~~~~--~~~ai 101 (124)
T d2cchb2 24 LAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQH--AQQSI 101 (124)
T ss_dssp HHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGS--SCCHH
T ss_pred HHHHHHHHHHHhHHHHHccChHHHHHHHHHHHHHHhCCCCchHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCc--chhHH
Confidence 34556666543 4 222 222222223355555443446988665555554443333332222211111000 01224
Q ss_pred hhcccchhhhc
Q 030313 165 FRLYSSEKFLR 175 (179)
Q Consensus 165 ~r~~~~~~~~~ 175 (179)
.++|+.+++.+
T Consensus 102 ~~KYs~~kf~~ 112 (124)
T d2cchb2 102 REKYKNSKYHG 112 (124)
T ss_dssp HHHHTSGGGTT
T ss_pred HHHhCchhhCC
Confidence 56777777654
No 9
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.55 E-value=4e+02 Score=14.33 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=15.7
Q ss_pred HHHHHHhhcccchhhhhhhhhhh
Q 030313 111 EHSVLALSGMKEFQWMKWCNKFT 133 (179)
Q Consensus 111 ~v~~l~~~G~~~~~W~~iC~~~~ 133 (179)
++..+.++|-.++.+.++|...+
T Consensus 15 a~~l~~~~G~~~~t~~~Ia~~ag 37 (68)
T d2id3a1 15 AGDALAADGFDALDLGEIARRAG 37 (68)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHT
T ss_pred HHHHHHHhCcccCCHHHHHHHHC
Confidence 34566778888777888876443
No 10
>d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=5.8e+02 Score=17.86 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=18.4
Q ss_pred hHhHHHHHHHHHhhhhHHHHHH
Q 030313 93 LLDQMVVYIAFGTNSAAVEHSV 114 (179)
Q Consensus 93 ~~Dqv~ayLl~sa~sAA~~v~~ 114 (179)
+-|.+-+.|+-|+.-||.+++.
T Consensus 96 v~dLl~a~ll~S~NdAA~aLA~ 117 (259)
T d3beca2 96 VSQLIRGINLQSGNDACVAMAD 117 (259)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH
T ss_pred hHHhhhhhhhhhcChHHHHHHH
Confidence 5678888888999999998875
Done!