BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030315
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 61 GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEK 120
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 88 GNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRTI 136
Query: 121 LGVVLDKEDEMDCLVTG 137
+ L K DE+DCLV G
Sbjct: 137 GNLHLHKLDELDCLVKG 153
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 61 GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEK 120
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 74 GNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRTI 122
Query: 121 LGVVLDKEDEMDCLVTG 137
+ L K DE+DCLV G
Sbjct: 123 GNLHLHKLDELDCLVKG 139
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 61 GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEK 120
G LHF +F T + ++ R KN ++ +T++ ATGGGAYKF +
Sbjct: 90 GNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRTI 138
Query: 121 LGVVLDKEDEMDCLVTG 137
+ L K DE+DCLV G
Sbjct: 139 GNLHLHKLDELDCLVKG 155
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 14 GDESESQISHLALDIGGSLIKVVYFLRSNXXXXXXXXXXXXXXPV---LEGRLHFAK--- 67
G ++ +DIGG+L+K+VYF + + L + K
Sbjct: 18 GSKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGI 77
Query: 68 ----FETSKIIDC-----LEFIRSKNLHLAGFRHHDAS---ASDKTLIKATGGGAYKFAD 115
E + C L FIR + + F + +S T + ATGGGA+KF +
Sbjct: 78 RDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEE 137
Query: 116 LIKEKLGVVLDKEDEMDCLVTG 137
+ + L K DE+DCL+ G
Sbjct: 138 DFRMIADLQLHKLDELDCLIQG 159
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
+G LHF +F + + ++ KN +S T + ATGGGA+KF + +
Sbjct: 71 KGNLHFIRFPSCAMHRFIQMGSEKNF-----------SSLHTTLCATGGGAFKFEEDFRM 119
Query: 120 KLGVVLDKEDEMDCLVTG 137
+ L K DE+DCL+ G
Sbjct: 120 IADLQLHKLDELDCLIQG 137
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 89 GFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMD 132
G H A S T + GGG +F DL ++ L K DE+D
Sbjct: 1 GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELD 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,094,184
Number of Sequences: 62578
Number of extensions: 131903
Number of successful extensions: 244
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)