Query 030315
Match_columns 179
No_of_seqs 120 out of 285
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201 Pantothenate kinase Pa 100.0 1.6E-44 3.5E-49 314.2 12.4 158 15-177 17-185 (371)
2 PLN02920 pantothenate kinase 1 100.0 9.6E-44 2.1E-48 316.8 15.2 168 10-177 7-176 (398)
3 PF03630 Fumble: Fumble ; Int 100.0 1.4E-44 3E-49 318.8 5.3 150 22-177 1-167 (341)
4 PLN02902 pantothenate kinase 100.0 1E-41 2.2E-46 325.2 14.9 175 2-177 27-225 (876)
5 PTZ00297 pantothenate kinase; 100.0 6.4E-36 1.4E-40 300.3 13.7 153 19-177 1037-1225(1452)
6 COG5146 PanK Pantothenate kina 100.0 4.6E-35 9.9E-40 247.8 4.8 136 18-177 15-156 (342)
7 TIGR00555 panK_eukar pantothen 100.0 1.3E-31 2.9E-36 230.8 9.8 112 22-177 1-112 (279)
8 PRK13317 pantothenate kinase; 99.8 1.8E-20 4E-25 161.4 8.9 104 22-176 3-106 (277)
9 TIGR03286 methan_mark_15 putat 98.1 1.4E-05 2.9E-10 72.7 9.2 100 20-153 143-247 (404)
10 smart00732 YqgFc Likely ribonu 96.3 0.044 9.5E-07 38.9 8.5 17 23-39 3-19 (99)
11 TIGR03192 benz_CoA_bzdQ benzoy 96.2 0.029 6.2E-07 49.3 8.7 88 21-142 32-122 (293)
12 TIGR01175 pilM type IV pilus a 95.6 0.066 1.4E-06 46.5 8.3 36 100-135 283-320 (348)
13 COG1940 NagC Transcriptional r 95.0 0.69 1.5E-05 39.6 12.4 101 18-143 3-128 (314)
14 PRK14101 bifunctional glucokin 94.6 0.051 1.1E-06 51.8 4.9 107 13-141 11-126 (638)
15 TIGR00241 CoA_E_activ CoA-subs 94.4 0.24 5.2E-06 41.5 8.1 87 23-142 2-89 (248)
16 PRK12408 glucokinase; Provisio 94.4 0.083 1.8E-06 46.5 5.5 106 23-141 18-129 (336)
17 TIGR02261 benz_CoA_red_D benzo 93.9 0.41 8.9E-06 41.5 8.5 92 22-153 2-103 (262)
18 PF05378 Hydant_A_N: Hydantoin 93.7 0.1 2.2E-06 42.2 4.3 17 23-39 1-17 (176)
19 PRK13318 pantothenate kinase; 93.0 0.27 5.8E-06 41.6 6.0 18 22-39 1-18 (258)
20 PRK13321 pantothenate kinase; 92.0 0.45 9.8E-06 40.3 6.2 18 22-39 1-18 (256)
21 PRK00292 glk glucokinase; Prov 90.5 0.45 9.7E-06 41.1 4.7 99 23-141 4-111 (316)
22 PRK09557 fructokinase; Reviewe 90.0 4.7 0.0001 34.4 10.6 102 22-141 1-116 (301)
23 TIGR00744 ROK_glcA_fam ROK fam 89.4 5.7 0.00012 33.9 10.6 41 112-152 88-128 (318)
24 PRK00109 Holliday junction res 88.8 6 0.00013 30.7 9.5 94 20-142 3-109 (138)
25 PRK13928 rod shape-determining 88.7 0.64 1.4E-05 40.6 4.3 44 102-145 278-324 (336)
26 PRK13311 N-acetyl-D-glucosamin 88.6 10 0.00022 31.7 11.5 112 23-152 2-127 (256)
27 PF02685 Glucokinase: Glucokin 88.4 1.4 3.1E-05 38.9 6.4 98 24-143 1-113 (316)
28 PRK13930 rod shape-determining 86.1 1.2 2.5E-05 38.5 4.4 44 102-145 283-329 (335)
29 PF11104 PilM_2: Type IV pilus 85.8 0.91 2E-05 39.8 3.6 35 99-133 274-310 (340)
30 PF00480 ROK: ROK family; Int 85.5 14 0.00031 28.5 10.0 110 25-152 1-122 (179)
31 TIGR03739 PRTRC_D PRTRC system 85.2 1.8 4E-05 37.6 5.3 42 100-141 274-317 (320)
32 PRK13929 rod-share determining 85.1 1.2 2.7E-05 38.9 4.2 43 102-144 281-326 (335)
33 PRK13310 N-acetyl-D-glucosamin 84.6 20 0.00043 30.5 11.3 99 23-141 2-116 (303)
34 TIGR00749 glk glucokinase, pro 84.5 1.4 3.1E-05 38.1 4.2 24 115-138 83-107 (316)
35 PF06723 MreB_Mbl: MreB/Mbl pr 84.4 0.94 2E-05 40.3 3.1 43 102-144 276-321 (326)
36 COG1924 Activator of 2-hydroxy 83.5 6.1 0.00013 36.2 7.9 95 19-143 133-228 (396)
37 PRK09698 D-allose kinase; Prov 81.7 17 0.00037 30.8 9.7 28 111-138 94-121 (302)
38 PTZ00288 glucokinase 1; Provis 80.1 6 0.00013 36.3 6.7 114 15-142 20-150 (405)
39 COG0145 HyuA N-methylhydantoin 79.5 2.9 6.2E-05 40.8 4.6 20 22-41 3-22 (674)
40 PRK13917 plasmid segregation p 79.4 7.1 0.00015 34.6 6.8 44 100-143 292-335 (344)
41 PF01869 BcrAD_BadFG: BadF/Bad 78.3 12 0.00026 31.4 7.6 16 24-39 1-16 (271)
42 PLN02666 5-oxoprolinase 77.1 3.6 7.8E-05 42.9 4.8 35 19-71 7-41 (1275)
43 TIGR00904 mreB cell shape dete 77.0 3.7 8E-05 35.7 4.2 43 102-144 282-327 (333)
44 PRK13927 rod shape-determining 75.2 4.7 0.0001 34.9 4.4 44 102-145 279-325 (334)
45 PF06406 StbA: StbA protein; 74.6 6 0.00013 34.5 5.0 39 100-138 273-315 (318)
46 TIGR00241 CoA_E_activ CoA-subs 68.3 7.3 0.00016 32.6 3.9 17 23-39 93-109 (248)
47 PF00370 FGGY_N: FGGY family o 65.1 14 0.0003 30.4 5.0 17 23-39 2-18 (245)
48 PF02782 FGGY_C: FGGY family o 65.0 21 0.00046 28.0 5.8 42 100-141 150-193 (198)
49 TIGR01311 glycerol_kin glycero 65.0 19 0.00041 33.1 6.3 17 23-39 3-19 (493)
50 PRK15080 ethanolamine utilizat 61.4 23 0.00049 30.1 5.7 39 100-138 222-263 (267)
51 TIGR01314 gntK_FGGY gluconate 61.0 7.6 0.00017 35.8 2.9 17 23-39 2-18 (505)
52 PRK13320 pantothenate kinase; 60.7 23 0.0005 30.0 5.6 18 22-39 3-20 (244)
53 TIGR00250 RNAse_H_YqgF RNAse H 58.9 79 0.0017 24.2 8.3 32 111-142 72-103 (130)
54 PRK11678 putative chaperone; P 56.6 25 0.00053 32.6 5.4 42 101-142 401-445 (450)
55 PF04260 DUF436: Protein of un 54.7 6.4 0.00014 32.2 1.1 13 22-34 121-133 (172)
56 TIGR00671 baf pantothenate kin 53.8 35 0.00076 28.8 5.6 17 23-39 1-17 (243)
57 PF00349 Hexokinase_1: Hexokin 52.5 14 0.0003 30.6 2.8 23 18-40 60-82 (206)
58 PF01548 DEDD_Tnp_IS110: Trans 52.3 44 0.00095 25.0 5.4 43 24-84 2-46 (144)
59 COG0703 AroK Shikimate kinase 51.9 7.7 0.00017 31.7 1.2 39 101-139 73-113 (172)
60 TIGR01174 ftsA cell division p 51.3 27 0.00059 30.8 4.7 29 102-130 317-347 (371)
61 TIGR02259 benz_CoA_red_A benzo 50.8 40 0.00086 31.4 5.7 17 23-39 4-20 (432)
62 TIGR01664 DNA-3'-Pase DNA 3'-p 50.7 75 0.0016 25.0 6.7 42 21-84 13-58 (166)
63 PRK04123 ribulokinase; Provisi 50.3 31 0.00068 32.1 5.1 43 100-142 439-484 (548)
64 TIGR03123 one_C_unchar_1 proba 49.9 37 0.0008 30.2 5.3 16 24-39 1-16 (318)
65 TIGR01315 5C_CHO_kinase FGGY-f 49.9 15 0.00033 34.4 3.0 17 23-39 2-18 (541)
66 PRK13331 pantothenate kinase; 49.0 59 0.0013 27.9 6.2 21 19-39 5-25 (251)
67 COG5026 Hexokinase [Carbohydra 48.6 52 0.0011 30.9 6.1 27 14-41 69-95 (466)
68 COG3426 Butyrate kinase [Energ 48.6 29 0.00064 31.1 4.3 44 100-143 297-347 (358)
69 PRK05082 N-acetylmannosamine k 48.4 1.6E+02 0.0036 24.7 12.0 31 111-141 86-116 (291)
70 TIGR01315 5C_CHO_kinase FGGY-f 47.5 48 0.001 31.0 5.9 43 100-142 444-488 (541)
71 TIGR02529 EutJ ethanolamine ut 46.0 44 0.00096 27.9 5.0 37 101-137 196-235 (239)
72 PRK10640 rhaB rhamnulokinase; 45.6 63 0.0014 29.7 6.3 42 100-142 376-419 (471)
73 PRK13326 pantothenate kinase; 44.6 59 0.0013 27.9 5.6 19 21-39 6-24 (262)
74 COG1548 Predicted transcriptio 44.2 17 0.00036 32.3 2.1 62 20-108 2-64 (330)
75 PRK00047 glpK glycerol kinase; 43.0 22 0.00048 32.7 2.9 17 23-39 7-23 (498)
76 PF06210 DUF1003: Protein of u 42.7 12 0.00027 28.2 1.0 12 164-175 31-42 (108)
77 TIGR01440 conserved hypothetic 40.9 9.3 0.0002 31.3 0.1 14 22-35 121-134 (172)
78 PF14450 FtsA: Cell division p 40.5 27 0.00058 26.0 2.5 16 24-39 2-17 (120)
79 PF06277 EutA: Ethanolamine ut 39.9 24 0.00052 33.2 2.6 89 21-114 3-99 (473)
80 PRK13690 hypothetical protein; 39.7 9.7 0.00021 31.5 0.0 14 22-35 128-141 (184)
81 TIGR01311 glycerol_kin glycero 39.2 33 0.00071 31.6 3.4 43 100-142 400-444 (493)
82 COG4972 PilM Tfp pilus assembl 39.1 35 0.00076 30.9 3.4 20 22-41 11-30 (354)
83 PF01968 Hydantoinase_A: Hydan 38.6 31 0.00067 29.8 3.0 21 19-39 75-95 (290)
84 PRK10719 eutA reactivating fac 38.6 26 0.00057 33.0 2.7 22 20-42 5-26 (475)
85 PTZ00107 hexokinase; Provision 38.5 1.2E+02 0.0025 28.5 6.9 22 18-39 71-92 (464)
86 PRK10331 L-fuculokinase; Provi 38.5 41 0.00088 30.7 3.9 17 23-39 4-20 (470)
87 TIGR03123 one_C_unchar_1 proba 38.3 21 0.00045 31.8 1.9 18 22-39 129-146 (318)
88 PF08967 DUF1884: Domain of un 38.0 22 0.00048 25.9 1.6 32 102-133 29-61 (85)
89 COG3933 Transcriptional antite 37.9 53 0.0012 30.9 4.5 23 99-121 243-266 (470)
90 KOG4276 Predicted hormone rece 37.5 54 0.0012 24.8 3.7 25 18-42 4-28 (113)
91 PRK10331 L-fuculokinase; Provi 36.6 70 0.0015 29.2 5.1 43 100-142 390-434 (470)
92 smart00842 FtsA Cell division 36.5 28 0.0006 27.7 2.2 17 24-40 2-18 (187)
93 PLN02295 glycerol kinase 36.4 33 0.00071 31.8 3.0 18 23-40 2-19 (512)
94 PRK15027 xylulokinase; Provisi 35.3 38 0.00083 31.0 3.2 18 23-40 2-19 (484)
95 TIGR02628 fuculo_kin_coli L-fu 35.2 39 0.00085 30.8 3.2 18 23-40 3-20 (465)
96 PF06406 StbA: StbA protein; 35.0 71 0.0015 27.8 4.7 18 22-39 1-18 (318)
97 PRK10939 autoinducer-2 (AI-2) 34.6 50 0.0011 30.6 3.9 18 23-40 5-22 (520)
98 PRK09472 ftsA cell division pr 34.1 68 0.0015 29.1 4.6 28 100-127 329-358 (420)
99 PTZ00294 glycerol kinase-like 33.7 39 0.00084 31.2 2.9 18 23-40 4-21 (504)
100 PF03309 Pan_kinase: Type III 33.1 1.7E+02 0.0036 23.7 6.4 17 23-39 1-17 (206)
101 COG4420 Predicted membrane pro 33.0 21 0.00046 29.7 1.0 14 164-177 85-98 (191)
102 PF03744 BioW: 6-carboxyhexano 32.4 47 0.001 28.6 3.0 25 58-83 210-234 (239)
103 PRK01322 6-carboxyhexanoate--C 32.1 53 0.0012 28.3 3.3 25 58-83 210-234 (242)
104 PRK13324 pantothenate kinase; 31.1 1.6E+02 0.0035 25.2 6.2 18 22-39 1-18 (258)
105 PRK13320 pantothenate kinase; 30.7 1.1E+02 0.0025 25.7 5.1 37 101-143 205-241 (244)
106 PRK13930 rod shape-determining 30.0 40 0.00087 28.9 2.3 16 23-38 10-25 (335)
107 COG1070 XylB Sugar (pentulose 29.8 44 0.00094 31.0 2.6 20 22-41 5-24 (502)
108 PRK13329 pantothenate kinase; 29.7 1.1E+02 0.0024 26.0 4.9 51 73-144 194-246 (249)
109 PF03401 TctC: Tripartite tric 29.3 1E+02 0.0023 26.1 4.7 58 70-142 90-149 (274)
110 PLN02362 hexokinase 29.1 1.3E+02 0.0029 28.5 5.7 22 18-39 92-113 (509)
111 TIGR03192 benz_CoA_bzdQ benzoy 29.1 38 0.00082 29.9 2.0 17 23-39 127-143 (293)
112 TIGR02261 benz_CoA_red_D benzo 28.7 32 0.00069 29.8 1.4 17 23-39 99-115 (262)
113 PRK15080 ethanolamine utilizat 28.3 47 0.001 28.2 2.4 21 20-40 23-43 (267)
114 TIGR02627 rhamnulo_kin rhamnul 27.9 1.6E+02 0.0035 26.6 6.0 42 100-142 388-431 (454)
115 PF00012 HSP70: Hsp70 protein; 27.7 87 0.0019 29.1 4.2 16 24-39 2-17 (602)
116 PRK13331 pantothenate kinase; 27.4 97 0.0021 26.6 4.1 41 100-142 204-247 (251)
117 PLN02645 phosphoglycolate phos 26.8 2.6E+02 0.0057 24.1 6.8 39 72-126 48-89 (311)
118 TIGR02628 fuculo_kin_coli L-fu 26.6 1.2E+02 0.0027 27.6 5.0 44 100-143 394-439 (465)
119 PRK13927 rod shape-determining 26.6 54 0.0012 28.2 2.5 16 23-39 7-22 (334)
120 TIGR01312 XylB D-xylulose kina 26.3 1.4E+02 0.0029 27.0 5.1 16 24-39 1-16 (481)
121 COG1077 MreB Actin-like ATPase 26.3 49 0.0011 30.0 2.1 43 103-145 287-332 (342)
122 TIGR01234 L-ribulokinase L-rib 26.2 1.4E+02 0.0031 27.7 5.4 43 100-142 436-481 (536)
123 COG1521 Pantothenate kinase ty 26.1 1.7E+02 0.0037 25.2 5.4 18 22-39 1-18 (251)
124 TIGR01174 ftsA cell division p 25.9 50 0.0011 29.1 2.2 18 23-40 2-19 (371)
125 PRK10444 UMP phosphatase; Prov 25.7 4E+02 0.0086 22.3 8.3 25 101-126 35-62 (248)
126 cd04240 AAK_UC AAK_UC: Unchara 25.5 1.9E+02 0.0041 23.6 5.4 54 73-142 12-68 (203)
127 TIGR02529 EutJ ethanolamine ut 25.3 41 0.0009 28.1 1.5 18 25-42 1-18 (239)
128 PRK10939 autoinducer-2 (AI-2) 25.3 84 0.0018 29.1 3.6 43 100-142 410-454 (520)
129 cd04373 RhoGAP_p190 RhoGAP_p19 25.3 1.4E+02 0.003 23.9 4.5 68 72-153 18-90 (185)
130 COG0145 HyuA N-methylhydantoin 25.1 57 0.0012 32.0 2.6 18 22-39 279-296 (674)
131 COG0560 SerB Phosphoserine pho 25.0 1.3E+02 0.0029 24.7 4.4 42 70-127 79-120 (212)
132 KOG1615 Phosphoserine phosphat 24.8 1.3E+02 0.0027 25.7 4.2 46 70-131 90-137 (227)
133 cd04408 RhoGAP_GMIP RhoGAP_GMI 24.8 1.3E+02 0.0028 24.5 4.3 68 72-153 19-90 (200)
134 PF11104 PilM_2: Type IV pilus 24.5 1E+02 0.0022 26.9 3.8 16 25-40 1-16 (340)
135 CHL00094 dnaK heat shock prote 24.4 1.7E+02 0.0037 28.0 5.6 44 100-143 329-375 (621)
136 PF03612 EIIBC-GUT_N: Sorbitol 24.4 91 0.002 25.8 3.2 37 100-136 25-68 (183)
137 PRK13322 pantothenate kinase; 24.3 72 0.0016 27.0 2.8 18 22-39 1-18 (246)
138 cd04390 RhoGAP_ARHGAP22_24_25 24.2 1.4E+02 0.0031 24.0 4.4 68 72-153 25-96 (199)
139 PRK15027 xylulokinase; Provisi 24.1 1.5E+02 0.0033 27.1 5.1 43 100-142 387-432 (484)
140 PRK13328 pantothenate kinase; 23.6 1.6E+02 0.0035 25.0 4.8 53 73-144 201-253 (255)
141 PF06706 CTV_P6: Citrus triste 23.5 46 0.00099 21.5 1.1 12 131-142 1-12 (51)
142 COG4819 EutA Ethanolamine util 22.9 62 0.0013 29.8 2.2 17 25-41 172-195 (473)
143 TIGR01234 L-ribulokinase L-rib 22.7 70 0.0015 29.8 2.6 17 23-39 3-19 (536)
144 PLN03184 chloroplast Hsp70; Pr 22.7 1.8E+02 0.004 28.2 5.5 43 100-142 366-411 (673)
145 COG4231 Indolepyruvate ferredo 22.6 1.3E+02 0.0028 29.5 4.4 49 71-126 225-274 (640)
146 PRK04123 ribulokinase; Provisi 22.5 74 0.0016 29.7 2.7 17 23-39 5-21 (548)
147 PLN02914 hexokinase 22.5 2.8E+02 0.006 26.3 6.5 22 18-39 92-113 (490)
148 PF00702 Hydrolase: haloacid d 22.3 3.5E+02 0.0076 20.7 6.2 48 60-123 119-166 (215)
149 TIGR01204 bioW 6-carboxyhexano 22.2 1E+02 0.0022 26.4 3.3 25 58-83 203-227 (232)
150 PLN02669 xylulokinase 22.1 1.2E+02 0.0025 28.8 4.0 44 100-143 446-491 (556)
151 COG4972 PilM Tfp pilus assembl 22.0 1.9E+02 0.0041 26.4 5.0 60 65-135 264-325 (354)
152 PF10686 DUF2493: Protein of u 21.8 21 0.00046 24.7 -0.8 22 101-122 4-25 (71)
153 TIGR02350 prok_dnaK chaperone 21.6 2.2E+02 0.0048 26.9 5.7 59 73-141 308-369 (595)
154 PF14824 Sirohm_synth_M: Siroh 21.3 99 0.0022 18.2 2.1 20 102-121 7-26 (30)
155 TIGR01753 flav_short flavodoxi 20.4 1.8E+02 0.0039 21.1 4.0 22 100-121 82-106 (140)
156 cd04403 RhoGAP_ARHGAP27_15_12_ 20.2 2.3E+02 0.005 22.6 4.9 69 72-154 19-93 (187)
157 PF02541 Ppx-GppA: Ppx/GppA ph 20.2 2.1E+02 0.0045 24.2 4.8 20 20-39 111-130 (285)
158 PLN02295 glycerol kinase 20.1 1.3E+02 0.0028 27.9 3.7 44 100-143 413-458 (512)
No 1
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=314.16 Aligned_cols=158 Identities=41% Similarity=0.567 Sum_probs=130.5
Q ss_pred CCCCCCCCeEEEecCCceeEEEEEeecCCCCCCCC----CCC-CCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhccc
Q 030315 15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVD----DSG-KKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG 89 (179)
Q Consensus 15 ~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~----~~g-~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~ 89 (179)
++ .+.++|+|+||||||+|+|||++.+...++.. .++ .+..+..+|||+|++|+|.+|+.|++||+.+..+..
T Consensus 17 ~~-~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~~~n~~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~- 94 (371)
T KOG2201|consen 17 NN-KPMISHFAMDIGGTLVKLVYFSPVDISPEEEESEVILNGAYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHP- 94 (371)
T ss_pred cc-cccCceEEEecCCcEEEEEEEecCCCCcchhhhhcccccccccccccccEEEEEEeeecCccchhHHhhcchhhcc-
Confidence 45 77899999999999999999999987543221 122 223456899999999999999999999999865442
Q ss_pred ccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccceec------c
Q 030315 90 FRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLT------R 163 (179)
Q Consensus 90 ~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~~~------~ 163 (179)
.++.....++|||||||||||+|+|++.|+++++|+|||+|||+|++|+++++|+|||||+++..+..++ .
T Consensus 95 ---~k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d 171 (371)
T KOG2201|consen 95 ---VKNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLD 171 (371)
T ss_pred ---ccccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccC
Confidence 1122223578999999999999999999999999999999999999999999999999999987654432 5
Q ss_pred cCcchhhHhhhhhh
Q 030315 164 MIYTLIFLLILALV 177 (179)
Q Consensus 164 ~~yp~~~~ni~~~~ 177 (179)
+|||||||||||-|
T Consensus 172 ~~yPyLLVNIGSGV 185 (371)
T KOG2201|consen 172 SPYPYLLVNIGSGV 185 (371)
T ss_pred CCCceEEEEcCCCe
Confidence 68999999999976
No 2
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=9.6e-44 Score=316.78 Aligned_cols=168 Identities=54% Similarity=0.843 Sum_probs=133.1
Q ss_pred CCCCCCCCCCCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhccc
Q 030315 10 ENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG 89 (179)
Q Consensus 10 ~~~~~~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~ 89 (179)
++.+..++++.++||||||||||+|||||++................+..+|||||++|||++|++|++||+++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~a~Diggsl~Klvy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~ 86 (398)
T PLN02920 7 DEGDGNSSPIQISHLALDIGGSLIKLVYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLHHGG 86 (398)
T ss_pred cCCCcCCCccceeEEEEEcCCceEEEEEEeccCCccccccccccccccCCCceEEEEEecccCHHHHHHHHHhccccccc
Confidence 33445777888999999999999999999987653221111111112468999999999999999999999998765533
Q ss_pred ccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccce-e-cccCcc
Q 030315 90 FRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCR-L-TRMIYT 167 (179)
Q Consensus 90 ~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~-~-~~~~yp 167 (179)
..+++.......+|+||||||+||+++|+++++++++|+|||+|+++|++||++++|+|+|+|+++++.+. . ..++||
T Consensus 87 ~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyP 166 (398)
T PLN02920 87 FQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYP 166 (398)
T ss_pred cccccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccCc
Confidence 22222223346889999999999999999999999999999999999999999999999999998664332 1 247999
Q ss_pred hhhHhhhhhh
Q 030315 168 LIFLLILALV 177 (179)
Q Consensus 168 ~~~~ni~~~~ 177 (179)
||||||||-|
T Consensus 167 yLLVNIGSGV 176 (398)
T PLN02920 167 YLLVNIGSGV 176 (398)
T ss_pred eEEEEcCCCE
Confidence 9999999865
No 3
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=1.4e-44 Score=318.81 Aligned_cols=150 Identities=43% Similarity=0.651 Sum_probs=114.1
Q ss_pred CeEEEecCCceeEEEEEeecCCCCCCCCC-----------CCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcccc
Q 030315 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDD-----------SGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGF 90 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~~~~~~~~~~-----------~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~ 90 (179)
+||||||||||+|||||+|.+...+...+ ......+..+|||||++|||++|++||+|++++..+..
T Consensus 1 ~~faiDIGGTL~KlVYfs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~Fi~FeT~~ie~~i~fi~~~~~~~~-- 78 (341)
T PF03630_consen 1 SHFAIDIGGTLVKLVYFSPVDSSPDNQDKEDDSLRSLRREMHEIESKERGGRLHFIKFETKNIEECIDFIKENILEHK-- 78 (341)
T ss_dssp -EEEEEE-SSEEEEEEEEESS--CHHHHHCHHHHHHHHH-EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHS--S-T--
T ss_pred CeEEEEcCCceEEEEEEeecCCCcccccccccchhhhhhhhccccccCcCCEEEEEEechhhHHHHHHHHHHhhhhcc--
Confidence 59999999999999999998753211000 00111355799999999999999999999999764321
Q ss_pred cccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccc------eeccc
Q 030315 91 RHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLC------RLTRM 164 (179)
Q Consensus 91 ~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~------~~~~~ 164 (179)
+.....++|+|||||||||+++|+++||++++|+|||+|||+|++||++++|+|+|+|+++.+.. ....+
T Consensus 79 ----~~~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~~ 154 (341)
T PF03630_consen 79 ----GISQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNSD 154 (341)
T ss_dssp ----TGGGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTSS
T ss_pred ----ccCccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCCC
Confidence 11224689999999999999999999999999999999999999999999999999999755322 24689
Q ss_pred CcchhhHhhhhhh
Q 030315 165 IYTLIFLLILALV 177 (179)
Q Consensus 165 ~yp~~~~ni~~~~ 177 (179)
+||||||||||-|
T Consensus 155 ~~PyllvniGsGv 167 (341)
T PF03630_consen 155 IYPYLLVNIGSGV 167 (341)
T ss_dssp -SSEEEEEESSSE
T ss_pred CCcEEEEEcCCce
Confidence 9999999999865
No 4
>PLN02902 pantothenate kinase
Probab=100.00 E-value=1e-41 Score=325.19 Aligned_cols=175 Identities=51% Similarity=0.788 Sum_probs=136.8
Q ss_pred CCCCCcCCCCCC--------CCCCCCCCCeEEEecCCceeEEEEEeecCCCCCC-CCC-----------CCCCCCCCCCC
Q 030315 2 DVKKPASQENLN--------GDESESQISHLALDIGGSLIKVVYFLRSNGSGGS-VDD-----------SGKKSDPVLEG 61 (179)
Q Consensus 2 ~~~~~~~~~~~~--------~~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~-~~~-----------~g~~~~~~~~G 61 (179)
|+..+.++++.+ ||| ++.++|||+||||||+|||||++...+..+ +.+ ..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~~~~~i~lp~~-~~~i~h~~~digg~l~klvy~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 105 (876)
T PLN02902 27 DLSKAAIQGNLEERDPTILLPNQ-SDDISHLALDIGGSLIKLVYFSRHEDRSTDDKRKRTIKERLGITNGNRRSYPILGG 105 (876)
T ss_pred CccccccccccccCCCCccCCCC-CCcceeEEEecCCceEEEEEEeccCCccccccccccccccccccccccccccCCCc
Confidence 455555554444 366 899999999999999999999987653221 111 22333567899
Q ss_pred eEEEEEeeccCHHHHHHHHHhhhhhcccccc-cC-CCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHH
Q 030315 62 RLHFAKFETSKIIDCLEFIRSKNLHLAGFRH-HD-ASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGAN 139 (179)
Q Consensus 62 ~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~-~~-~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~ 139 (179)
||||++|||++|++|++|++++.++..+... ++ +.....++|+|||||||||+++|++++|++++|+|||+|+|+|++
T Consensus 106 rl~F~~fet~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~DEm~~li~Gl~ 185 (876)
T PLN02902 106 RLHFVKFETSKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGAN 185 (876)
T ss_pred eEEEEEcCcccHHHHHHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeecHHHHHHHHHH
Confidence 9999999999999999999998765533211 11 112234789999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEecCCccce-e-cccCcchhhHhhhhhh
Q 030315 140 FLLKFIKKLLLMWMVRRNLCR-L-TRMIYTLIFLLILALV 177 (179)
Q Consensus 140 fLL~~i~~E~Fty~~~~~~~~-~-~~~~yp~~~~ni~~~~ 177 (179)
||++++++|+|||.++...+. . ..++||||||||||-|
T Consensus 186 fLl~~i~~e~f~~~~~~~~~~~~~~~~lyPyLLVNIGSGV 225 (876)
T PLN02902 186 FLLKAIRHEAFTHMEGEKEFVQIDQNDLFPYLLVNIGSGV 225 (876)
T ss_pred HHHhhCcchheeeccccccccccCccCCCceEEEEcCCce
Confidence 999999999999987654322 1 3589999999999865
No 5
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=6.4e-36 Score=300.34 Aligned_cols=153 Identities=24% Similarity=0.395 Sum_probs=121.9
Q ss_pred CCCCeEEEecCCceeEEEEEeecCC---------CCCCCC-CCCCC-----------------CCCCCCCeEEEEEeecc
Q 030315 19 SQISHLALDIGGSLIKVVYFLRSNG---------SGGSVD-DSGKK-----------------SDPVLEGRLHFAKFETS 71 (179)
Q Consensus 19 ~~~~~~aiDIGGTL~KlVYf~~~~~---------~~~~~~-~~g~~-----------------~~~~~~G~LhF~kFeT~ 71 (179)
+.--.++||||||++|+||+.|+.+ |++..+ +.|.| +.+.++|||||++|||+
T Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~f~~f~t~ 1116 (1452)
T PTZ00297 1037 SLQVPVTIDIGGTFAKIAYVQPPGGFAFPTYIVHEASSLSEKLGLRTFHFFADAEAAESELRTRPHSRVGTLRFAKIPSK 1116 (1452)
T ss_pred cccCceEEecCceeEEEEEEeCCCCCCCcchhhhhhhhhhhccCccccccccChHHhhhhhccCCCCCceEEEEEEeccc
Confidence 3445799999999999999999853 111111 12222 23568999999999999
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEE
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLM 151 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Ft 151 (179)
+|++|++||+++..+... ......+|+|||||||||+++|++.+|++++|+|||+|||+|++||++++|+|+||
T Consensus 1117 ~i~~~~~~l~~~~~~~~~------~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~~~~f~ 1190 (1452)
T PTZ00297 1117 QIPDFADYLAGSHAINYY------KPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAPESIFT 1190 (1452)
T ss_pred CHHHHHHHHHhhhhhccc------CcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCCceEEE
Confidence 999999999987654321 11235789999999999999999999999999999999999999999999999999
Q ss_pred EecCCcc---ceec------ccCcchhhHhhhhhh
Q 030315 152 WMVRRNL---CRLT------RMIYTLIFLLILALV 177 (179)
Q Consensus 152 y~~~~~~---~~~~------~~~yp~~~~ni~~~~ 177 (179)
|+...+. .+++ .++||||||||||-|
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~~~yp~llvNIGSGv 1225 (1452)
T PTZ00297 1191 VDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSGI 1225 (1452)
T ss_pred eccccccccccccccCccccCCCCceEEEEccCce
Confidence 9874321 2333 479999999999965
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-35 Score=247.85 Aligned_cols=136 Identities=30% Similarity=0.423 Sum_probs=115.9
Q ss_pred CCCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcccccccCCCC
Q 030315 18 ESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASA 97 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~ 97 (179)
.+.++++||||||||+|+|| +| ....||.|++++|.+||+|++|+.+... .|+...
T Consensus 15 ~~n~~~vaiDiGGtLaKvv~-sp-----------------~~snrl~F~t~eT~kId~~ve~l~~li~------~h~k~C 70 (342)
T COG5146 15 ANNVMKVAIDIGGTLAKVVQ-SP-----------------SQSNRLTFKTEETKKIDQVVEWLNNLIQ------QHEKLC 70 (342)
T ss_pred ccceEEEEEecCceeeeeee-Cc-----------------ccccceeeehHhhhhHHHHHHHHHHHHH------HHHhhh
Confidence 45689999999999999999 53 3567999999999999999999976532 122233
Q ss_pred CCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccce------ecccCcchhhH
Q 030315 98 SDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCR------LTRMIYTLIFL 171 (179)
Q Consensus 98 ~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~------~~~~~yp~~~~ 171 (179)
.....+.|||||||||+|++.+.|.+++.+++||+||+.|++|+..+||+|+|++.+...+-- +..++||||+|
T Consensus 71 ~~~~~liatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 71 LTKITLIATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hheeeEEecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeeccHHHeeeeccccchhhhhhhhccccccceeeE
Confidence 356789999999999999999999999999999999999999999999999999998654322 34779999999
Q ss_pred hhhhhh
Q 030315 172 LILALV 177 (179)
Q Consensus 172 ni~~~~ 177 (179)
||||-|
T Consensus 151 NiGsGv 156 (342)
T COG5146 151 NIGSGV 156 (342)
T ss_pred eccCCe
Confidence 999865
No 7
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=99.97 E-value=1.3e-31 Score=230.82 Aligned_cols=112 Identities=43% Similarity=0.635 Sum_probs=100.9
Q ss_pred CeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcccccccCCCCCCce
Q 030315 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~ 101 (179)
+|+||||||||+|+||++ .++++||.+|||+++++|++|+++...... ...
T Consensus 1 ~~iGiDiGgT~~Kiv~~~-------------------~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 51 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEE-------------------PKGRRKFKTFETTNIDKFIEWLKNQIHRHS----------RIT 51 (279)
T ss_pred CeEEEEeCcceEEEEEEc-------------------CCCcEEEEEeecccHHHHHHHHHHHHHhhc----------Cce
Confidence 589999999999999976 589999999999999999999988653221 257
Q ss_pred EEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccceecccCcchhhHhhhhhh
Q 030315 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALV 177 (179)
Q Consensus 102 ~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~~~~~~yp~~~~ni~~~~ 177 (179)
+|++|||||+||++.|++.++++++|+|||+|+++|++||+++.|+ .++||||+|||||-|
T Consensus 52 ~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~---------------~~~~p~llvnIGsGv 112 (279)
T TIGR00555 52 TLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPK---------------DDIYPYLLVNIGTGT 112 (279)
T ss_pred EEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccC---------------CCCCceEEEEecCCe
Confidence 8999999999999999999999999999999999999999987765 789999999999854
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=99.82 E-value=1.8e-20 Score=161.41 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=90.3
Q ss_pred CeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcccccccCCCCCCce
Q 030315 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~ 101 (179)
.++|||||||++|+||+. .+++++|.+|+++..+.+++|+.+.. ...
T Consensus 3 ~~iGIDiGstt~K~v~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~ 49 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLE-------------------EKKQRTFKTEYSAEGKKVIDWLINLQ--------------DIE 49 (277)
T ss_pred ceEEEEeCcccEEEEEEc-------------------CCCeEEEEeeccHHHHHHHHHhhccC--------------Cce
Confidence 579999999999999987 57889999999999999999985431 246
Q ss_pred EEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccceecccCcchhhHhhhhh
Q 030315 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILAL 176 (179)
Q Consensus 102 ~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~~~~~~yp~~~~ni~~~ 176 (179)
+|++|||||+++++++ .+|++++|+|||+|+++|++|++++. ..+.+||+++|||+-
T Consensus 50 ~i~~TG~g~~~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~----------------~~~~~~~~i~~iG~g 106 (277)
T PRK13317 50 KICLTGGKAGYLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEE----------------GHDLNDYIFTNIGTG 106 (277)
T ss_pred EEEEECcchhhhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhc----------------CCCCCcEEEEEecCc
Confidence 7999999999999977 47899999999999999999999653 247889999999974
No 9
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.12 E-value=1.4e-05 Score=72.75 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEE----EeeccCHHHHH-HHHHhhhhhcccccccC
Q 030315 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFA----KFETSKIIDCL-EFIRSKNLHLAGFRHHD 94 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~----kFeT~~i~~~i-~fik~~~l~~~~~~~~~ 94 (179)
....+|||||+|.+|+|+.. .+..++.. .++...+.+++ +|+++.++...
T Consensus 143 ~g~~lGIDiGSTttK~Vl~d-------------------d~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl~~~------ 197 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVME-------------------DNEVIGTGWVPTTKVIESAEEAVERALEEAGVSLE------ 197 (404)
T ss_pred CCEEEEEEcChhheeeEEEc-------------------CCeEEEEEEeecccHHHHHHHHHHHHHHHcCCCcc------
Confidence 34689999999999999965 11112222 22333455555 55555443211
Q ss_pred CCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEe
Q 030315 95 ASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWM 153 (179)
Q Consensus 95 ~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~ 153 (179)
....+.+||.|.....+.+ +.+. ...|+.|..+|+.||..+.|+.....+
T Consensus 198 ----di~~i~~TGyGR~~i~~~~----~ad~-iv~EItaha~GA~~L~p~~~~v~TIID 247 (404)
T TIGR03286 198 ----DVEAIGTTGYGRFTIGEHF----GADL-IQEELTVNSKGAVYLADKQEGPATVID 247 (404)
T ss_pred ----ceeEEEeeeecHHHHhhhc----CCCc-eEEEEhhHHHHHHHhcccCCCCcEEEE
Confidence 2467999999988664333 2332 379999999999999754444443333
No 10
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.27 E-value=0.044 Score=38.90 Aligned_cols=17 Identities=35% Similarity=0.223 Sum_probs=15.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|||-+|++.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 3 VLGLDPGRKGIGVAVVD 19 (99)
T ss_pred EEEEccCCCeEEEEEEC
Confidence 58999999999999976
No 11
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.23 E-value=0.029 Score=49.33 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=52.9
Q ss_pred CCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeE-EEEEeecc-CH-HHHHHHHHhhhhhcccccccCCCC
Q 030315 21 ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRL-HFAKFETS-KI-IDCLEFIRSKNLHLAGFRHHDASA 97 (179)
Q Consensus 21 ~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~L-hF~kFeT~-~i-~~~i~fik~~~l~~~~~~~~~~~~ 97 (179)
+..+|||||.|.+|+|-+. . +++ .+...+|. +. +...+.+++. +...+.. .
T Consensus 32 m~~~GIDiGStt~K~Vlld-------------------~-~~i~~~~~~~tg~~~~~~a~~~l~~~-l~~~g~~-----~ 85 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-------------------D-GELYGYNSMRTGNNSPDSAKNALQGI-MDKIGMK-----L 85 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-------------------C-CEEEEEEeecCCCCHHHHHHHHHHHH-HHHcCCc-----c
Confidence 5679999999999999976 2 234 45555554 22 2333333332 1111100 0
Q ss_pred CCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 98 SDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 98 ~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
.....+.+||=|.... +-.-..+.|+-|..+|..|+.
T Consensus 86 ~~v~~~~~TGyGr~~~--------~~a~~~v~EItaha~Ga~~~~ 122 (293)
T TIGR03192 86 EDINYVVGTGYGRVNV--------PFAHKAITEIACHARGANYMG 122 (293)
T ss_pred cceEEEEEECcchhhc--------chhhcceeeHHHHHHHHHHhc
Confidence 0234588999995432 111245899999999999986
No 12
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.63 E-value=0.066 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.6
Q ss_pred ceEEEEecCchHh--hHHHHHHHhCCCcceeehhhHHH
Q 030315 100 KTLIKATGGGAYK--FADLIKEKLGVVLDKEDEMDCLV 135 (179)
Q Consensus 100 ~~~i~aTGGGA~K--f~dl~~~~lgv~~~k~DEMecLI 135 (179)
...|.+|||||.- +.+.|.+.||++++..+=+.++-
T Consensus 283 i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~ 320 (348)
T TIGR01175 283 LDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMA 320 (348)
T ss_pred cceEEEECccccchhHHHHHHHHHCCCeEecChHHhcc
Confidence 4679999999986 89999999999999888766543
No 13
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.69 Score=39.64 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccC-------HHHHHHHHHhhhhhcccc
Q 030315 18 ESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSK-------IIDCLEFIRSKNLHLAGF 90 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~-------i~~~i~fik~~~l~~~~~ 90 (179)
++....+|||||||-+|++.... .+..+.-.+++|.. ++..++.+++......
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~------------------~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-- 62 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL------------------DGEILLRERIPTPTPDPEEAILEAILALVAELLKQAQ-- 62 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC------------------CCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHhcC--
Confidence 34567899999999999999661 23333444555442 4456666655432110
Q ss_pred cccCCCCCCceEEEEec---------------Cch---HhhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 91 RHHDASASDKTLIKATG---------------GGA---YKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 91 ~~~~~~~~~~~~i~aTG---------------GGA---~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
.. ....-|.++| -+. .-+.+.|++.+++++..+.+-.|..-|=.++-.
T Consensus 63 ~~-----~~~iGIgi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~ 128 (314)
T COG1940 63 GR-----VAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGA 128 (314)
T ss_pred Cc-----CceEEEEeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCC
Confidence 00 0011122221 111 347999999999999999999999988777653
No 14
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.57 E-value=0.051 Score=51.80 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=60.6
Q ss_pred CCCCCCCCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcc----
Q 030315 13 NGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLA---- 88 (179)
Q Consensus 13 ~~~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~---- 88 (179)
+..||.+. +.+++|||||-+|+..+.. .+.-+...+++|...+.+.+.|++......
T Consensus 11 ~~~~~~~~-~~L~iDIGGT~ir~al~~~------------------~g~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~ 71 (638)
T PRK14101 11 EASQHADG-PRLLADVGGTNARFALETG------------------PGEITQIRVYPGADYPTLTDAIRKYLKDVKIGRV 71 (638)
T ss_pred hhccCCCC-CEEEEEcCchhheeeeecC------------------CCcccceeEEecCCCCCHHHHHHHHHHhcCCCCc
Confidence 34675544 5999999999999998741 122255577888765555555544311100
Q ss_pred ---cccccCCCCCCceEEEEecCchHhh-HHHHHHHhCCC-cceeehhhHHHHhHHHH
Q 030315 89 ---GFRHHDASASDKTLIKATGGGAYKF-ADLIKEKLGVV-LDKEDEMDCLVTGANFL 141 (179)
Q Consensus 89 ---~~~~~~~~~~~~~~i~aTGGGA~Kf-~dl~~~~lgv~-~~k~DEMecLI~Gl~fL 141 (179)
++.- -++. ....+.+|-=+ .++ .+.+++.+|++ +..+..+.|...|...|
T Consensus 72 ~~igig~-pGpV-d~~~~~~~nl~-w~~~~~~l~~~~g~~~v~l~ND~~aaA~ge~~l 126 (638)
T PRK14101 72 NHAAIAI-ANPV-DGDQVRMTNHD-WSFSIEATRRALGFDTLLVVNDFTALAMALPGL 126 (638)
T ss_pred ceEEEEE-ecCc-cCCeeeecCCC-cEecHHHHHHHcCCCeEEEEchHHHHHcCCccC
Confidence 0000 0111 11123332111 111 26678889985 68999999999986443
No 15
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=94.42 E-value=0.24 Score=41.55 Aligned_cols=87 Identities=25% Similarity=0.279 Sum_probs=52.5
Q ss_pred eEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc-CHHHHHHHHHhhhhhcccccccCCCCCCce
Q 030315 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS-KIIDCLEFIRSKNLHLAGFRHHDASASDKT 101 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~-~i~~~i~fik~~~l~~~~~~~~~~~~~~~~ 101 (179)
.+|||||+|.+|.|-+. .+..+...+.++. ..+.+.+-+++.. ...+. ......
T Consensus 2 ~lGIDiGtts~K~vl~d-------------------~g~il~~~~~~~~~~~~~~~~~l~~~~-~~~~~-----~~~~i~ 56 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-------------------DGKVIGYKWLDTTPVIEETARAILEAL-KEAGI-----GLEPID 56 (248)
T ss_pred EEEEEcChhheEEEEEc-------------------CCEEEEEEEecCCCCHHHHHHHHHHHH-HHcCC-----Chhhee
Confidence 47999999999999875 1223343343443 3344444454432 11110 011245
Q ss_pred EEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 102 LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 102 ~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
.|.+||-|..-.. + .+ ..++|..|..+|..++.
T Consensus 57 ~i~~Tg~~~~~v~--~-----~~-~~~~ei~~~~~g~~~~~ 89 (248)
T TIGR00241 57 KIVATGYGRHKVG--F-----AD-KIVTEISCHGKGANYLA 89 (248)
T ss_pred EEEEECCCccccc--c-----cC-CceEEhhHHHHHHHHHC
Confidence 6899998755332 1 12 36899999999999987
No 16
>PRK12408 glucokinase; Provisional
Probab=94.41 E-value=0.083 Score=46.53 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=59.1
Q ss_pred eEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhc-----ccccccCCCC
Q 030315 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHL-----AGFRHHDASA 97 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~-----~~~~~~~~~~ 97 (179)
.+++|||||-+|+..+....... .+...+...+++|..++.+.+.+++..... ..+.- -++.
T Consensus 18 ~L~~DIGGT~i~~al~d~~g~~~------------~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~igIg~-pG~~ 84 (336)
T PRK12408 18 FVAADVGGTHVRVALVCASPDAA------------KPVELLDYRTYRCADYPSLAAILADFLAECAPVRRGVIAS-AGYA 84 (336)
T ss_pred EEEEEcChhhhheeEEeccCCcc------------ccccccceeEecCCCccCHHHHHHHHHhcCCCcCEEEEEe-cCCc
Confidence 69999999999999975211000 001135567777766555444444321100 00000 1211
Q ss_pred CCceEEEEecCchHhhHHHHHHHhCCC-cceeehhhHHHHhHHHH
Q 030315 98 SDKTLIKATGGGAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFL 141 (179)
Q Consensus 98 ~~~~~i~aTGGGA~Kf~dl~~~~lgv~-~~k~DEMecLI~Gl~fL 141 (179)
.....+.+|-=.-..+.+.+++.++++ +..+...+|...|..++
T Consensus 85 ~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~gE~~~ 129 (336)
T PRK12408 85 LDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAPYM 129 (336)
T ss_pred eECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcccccC
Confidence 112233333101123568889999985 99999999999997665
No 17
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=93.86 E-value=0.41 Score=41.48 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=54.7
Q ss_pred CeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCC--e-EEEEEeec--cC----HHHHHHHHHhh-hhhccccc
Q 030315 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEG--R-LHFAKFET--SK----IIDCLEFIRSK-NLHLAGFR 91 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G--~-LhF~kFeT--~~----i~~~i~fik~~-~l~~~~~~ 91 (179)
..+|||||.|-+|.|-+.. .++ . +.+...++ .+ ..++++-+.+. ++..
T Consensus 2 ~~~GIDiGStttK~Vlid~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---- 59 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV------------------DGDKEECLAKRNDRIRQRDPFKLAEDAYDDLLEEAGLAA---- 59 (262)
T ss_pred eEEEEEcCcccEEEEEEec------------------CCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHHcCCCh----
Confidence 3689999999999999761 122 2 23333333 23 34455444332 2111
Q ss_pred ccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEe
Q 030315 92 HHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWM 153 (179)
Q Consensus 92 ~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~ 153 (179)
.....+.+||=|-.. .+. -..+.|.-|..+|+.|+. |+-....+
T Consensus 60 ------~~i~~i~~TGYGR~~---~~a------~~~vtEIt~ha~GA~~~~---p~~~tIiD 103 (262)
T TIGR02261 60 ------ADVAYCATTGEGESL---AFH------TGHFYSMTTHARGAIYLN---PEARAVLD 103 (262)
T ss_pred ------hheEEEEEECCchhh---hhh------cCCeeEEeHHHHHHHHHC---CCCCEEEE
Confidence 134678999998753 221 124679999999999975 55444444
No 18
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=93.69 E-value=0.1 Score=42.23 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=15.9
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
+||||+|||.+..|.+.
T Consensus 1 RigIDvGGT~TD~v~~d 17 (176)
T PF05378_consen 1 RIGIDVGGTFTDAVLLD 17 (176)
T ss_pred CeeEecCCCcEEEEEEe
Confidence 58999999999999987
No 19
>PRK13318 pantothenate kinase; Reviewed
Probab=93.03 E-value=0.27 Score=41.65 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=16.3
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
|.++||||||-+|++.+.
T Consensus 1 MiL~IDIGnT~iK~al~d 18 (258)
T PRK13318 1 MLLAIDVGNTNTVFGLYE 18 (258)
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 468999999999999987
No 20
>PRK13321 pantothenate kinase; Reviewed
Probab=92.05 E-value=0.45 Score=40.31 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.4
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
|.++||||||-+|+..|.
T Consensus 1 MiL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFD 18 (256)
T ss_pred CEEEEEECCCeEEEEEEE
Confidence 468999999999999987
No 21
>PRK00292 glk glucokinase; Provisional
Probab=90.50 E-value=0.45 Score=41.09 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=55.7
Q ss_pred eEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCe-EEEEEeeccCHHHHH----HHHHh-hhhhcccc--cccC
Q 030315 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGR-LHFAKFETSKIIDCL----EFIRS-KNLHLAGF--RHHD 94 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~-LhF~kFeT~~i~~~i----~fik~-~~l~~~~~--~~~~ 94 (179)
.+|+|||||-+|++.+.- .+++ +...+++|...+.+. +++++ .......+ .- .
T Consensus 4 ~lgiDIGgT~i~~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gigIg~-p 64 (316)
T PRK00292 4 ALVGDIGGTNARFALCDW------------------ANGEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACFAI-A 64 (316)
T ss_pred EEEEEcCccceEEEEEec------------------CCCceeeeEEEecCCCCCHHHHHHHHHHhccCCCCceEEEEE-e
Confidence 689999999999998751 2333 666777775444343 44432 11000000 00 0
Q ss_pred CCCCCceEEEEecCchHhhHHHHHHHhCCC-cceeehhhHHHHhHHHH
Q 030315 95 ASASDKTLIKATGGGAYKFADLIKEKLGVV-LDKEDEMDCLVTGANFL 141 (179)
Q Consensus 95 ~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~-~~k~DEMecLI~Gl~fL 141 (179)
++. +..++..|--.-.-..+.++++++++ +..+....|...|-.++
T Consensus 65 G~v-d~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~ 111 (316)
T PRK00292 65 GPV-DGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRL 111 (316)
T ss_pred Ccc-cCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccC
Confidence 111 01123333211111247788899995 99999999999886654
No 22
>PRK09557 fructokinase; Reviewed
Probab=90.04 E-value=4.7 Score=34.36 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred CeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc--CHHHHHHHHHhhhhhc-------ccccc
Q 030315 22 SHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS--KIIDCLEFIRSKNLHL-------AGFRH 92 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~--~i~~~i~fik~~~l~~-------~~~~~ 92 (179)
+.+|+|||||-++++.+.. .+..+.-.++++. .-+++++.|.+..... .++.-
T Consensus 1 ~~lgidig~t~~~~~l~d~------------------~g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gIgi 62 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD------------------AGEELFRKRLPTPRDDYQQTIEAIATLVDMAEQATGQRGTVGV 62 (301)
T ss_pred CEEEEEECCCcEEEEEECC------------------CCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 4689999999999999661 2233445566663 3344444443311000 00000
Q ss_pred -cCCCC-CCceEEEEec--C-chHhhHHHHHHHhCCCcceeehhhHHHHhHHHH
Q 030315 93 -HDASA-SDKTLIKATG--G-GAYKFADLIKEKLGVVLDKEDEMDCLVTGANFL 141 (179)
Q Consensus 93 -~~~~~-~~~~~i~aTG--G-GA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fL 141 (179)
..+.- .....+..+. . .-+...+.+++.+++++..+....|...|-.+.
T Consensus 63 ~~pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~ 116 (301)
T PRK09557 63 GIPGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVD 116 (301)
T ss_pred cCcccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHh
Confidence 00000 0011122211 1 234567789999999999999999999887654
No 23
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=89.40 E-value=5.7 Score=33.91 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=29.9
Q ss_pred hhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEE
Q 030315 112 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMW 152 (179)
Q Consensus 112 Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty 152 (179)
-..+.+++.+++++.......|...|-.++-.....+.|.|
T Consensus 88 ~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~~~ 128 (318)
T TIGR00744 88 PLKEKVEARVGLPVVVENDANAAALGEYKKGAGKGARDVIC 128 (318)
T ss_pred CHHHHHHHHHCCCEEEechHHHHHHHHHHhcccCCCCcEEE
Confidence 46788999999999999999999888766533223344444
No 24
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=88.78 E-value=6 Score=30.74 Aligned_cols=94 Identities=20% Similarity=0.120 Sum_probs=59.3
Q ss_pred CCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhcccccccCCCCCC
Q 030315 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASD 99 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~~~ 99 (179)
....+|||.|-.-+=++...+... . ...-+.+..... ...+++..+++++..
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~----------~--a~pl~~i~~~~~-~~~~~~l~~~i~~~~--------------- 54 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGG----------T--AQPLETIKRNNG-TPDWDRLEKLIKEWQ--------------- 54 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCC----------E--EcCEEEEEcCCC-chHHHHHHHHHHHhC---------------
Confidence 456899999999999998442110 0 001122221111 113566666665542
Q ss_pred ceEEEEec-----CchH--------hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATG-----GGAY--------KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTG-----GGA~--------Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
....+-| .|.. +|.+.+++.+++++...||=-+...--..|-
T Consensus 55 -i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~ 109 (138)
T PRK00109 55 -PDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERALA 109 (138)
T ss_pred -CCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHH
Confidence 1224444 4444 8999999999999999999998888877764
No 25
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=88.68 E-value=0.64 Score=40.55 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=38.8
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCccee-ehhhHHHHhHHHHHHhc
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKFI 145 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~-DEMecLI~Gl~fLL~~i 145 (179)
.|.+|||+|. .+.+.+++.+++++... +=++|.+.|+.+.+.+.
T Consensus 278 ~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 278 GIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 5999999998 88999999999988765 48999999999998763
No 26
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=88.60 E-value=10 Score=31.68 Aligned_cols=112 Identities=11% Similarity=0.146 Sum_probs=62.2
Q ss_pred eEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc--CHHHHHHHHHhhhhhccccccc-------
Q 030315 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS--KIIDCLEFIRSKNLHLAGFRHH------- 93 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~--~i~~~i~fik~~~l~~~~~~~~------- 93 (179)
.+|+|||||-+|++.+.- .+..+.-.++++. +.+++++.+++...........
T Consensus 2 ~lgidiggt~i~~~l~d~------------------~g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gIgv~ 63 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDE------------------NLQRIWHKRVPTPREDYPQLLQILRDLTEEADTYCGVQGSVGIG 63 (256)
T ss_pred EEEEEECCCcEEEEEECC------------------CCCEEEEEEecCCCcCHHHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 589999999999999661 2223444556543 3456665554432111000000
Q ss_pred -CCC-CCCceEEEEe---cCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEE
Q 030315 94 -DAS-ASDKTLIKAT---GGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMW 152 (179)
Q Consensus 94 -~~~-~~~~~~i~aT---GGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty 152 (179)
.+. ......+..+ +=..+.+.+.|++++++++.-+.+-.|...|=.+.-..-..+.|.|
T Consensus 64 ~pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~~~~~~v~ 127 (256)
T PRK13311 64 IPGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFRTYPTVLG 127 (256)
T ss_pred ecCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCCCCCcEEE
Confidence 000 0011122222 1123677889999999999999999999988666533223344444
No 27
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=88.39 E-value=1.4 Score=38.85 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=63.6
Q ss_pred EEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCC--eEEEEEeeccCHHHHHHHHHhhhhh-cccccccCCCCCCc
Q 030315 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEG--RLHFAKFETSKIIDCLEFIRSKNLH-LAGFRHHDASASDK 100 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G--~LhF~kFeT~~i~~~i~fik~~~l~-~~~~~~~~~~~~~~ 100 (179)
++-|||||-+-+..+.+.. .. -++-.+|++.+.+.+.+.|.+-... .... +.+..
T Consensus 1 Lv~DIGGTn~Rlal~~~~~-----------------~~~~~~~~~~~~~~~~~s~~~~l~~~l~~~~~~~-----~~p~~ 58 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDG-----------------GPLQLIDIRRYPSADFPSFEDALADYLAELDAGG-----PEPDS 58 (316)
T ss_dssp EEEEEETTEEEEEEEECTC-----------------GG-EEEEEEEEEGCCCCHHHHHHHHHHHHTCHHH-----TCEEE
T ss_pred CeEEeCcccEEEEEEEcCC-----------------CCccccccEEEecCCcCCHHHHHHHHHHhcccCC-----Cccce
Confidence 4679999999999988421 22 3677889999888887766553221 0100 11122
Q ss_pred eEEEEec---CchHhh--------HHHHHHHhCC-CcceeehhhHHHHhHHHHHH
Q 030315 101 TLIKATG---GGAYKF--------ADLIKEKLGV-VLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 101 ~~i~aTG---GGA~Kf--------~dl~~~~lgv-~~~k~DEMecLI~Gl~fLL~ 143 (179)
.+|.+-| ++..++ .+.+++.||+ ++.-++.|+++..|+-.|-.
T Consensus 59 ~~iavAGPV~~~~~~lTN~~W~i~~~~l~~~lg~~~v~liNDfeA~a~gl~~L~~ 113 (316)
T PF02685_consen 59 ACIAVAGPVRDGKVRLTNLPWTIDADELAQRLGIPRVRLINDFEAQAYGLPALDP 113 (316)
T ss_dssp EEEEESS-EETTCEE-SSSCCEEEHHHCHCCCT-TCEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEEecCccCCEEEecCCCccccHHHHHHHhCCceEEEEcccchheeccCCCCH
Confidence 4455544 444443 4667788887 57889999999999988763
No 28
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=86.09 E-value=1.2 Score=38.53 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=38.3
Q ss_pred EEEEecCch--HhhHHHHHHHhCCCcceee-hhhHHHHhHHHHHHhc
Q 030315 102 LIKATGGGA--YKFADLIKEKLGVVLDKED-EMDCLVTGANFLLKFI 145 (179)
Q Consensus 102 ~i~aTGGGA--~Kf~dl~~~~lgv~~~k~D-EMecLI~Gl~fLL~~i 145 (179)
.|.+|||+| -.+.+.+++.+++++...+ =+.+++.|+-+++.+.
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 499999999 8889999999999887764 5999999999998653
No 29
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=85.78 E-value=0.91 Score=39.78 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=27.1
Q ss_pred CceEEEEecCchH--hhHHHHHHHhCCCcceeehhhH
Q 030315 99 DKTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDC 133 (179)
Q Consensus 99 ~~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMec 133 (179)
...+|.+|||||. -..+.|.+.||+++...+.+.-
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~ 310 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKN 310 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGG
T ss_pred CCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHh
Confidence 3578999999995 5689999999999999988764
No 30
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=85.51 E-value=14 Score=28.54 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=63.6
Q ss_pred EEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeec-cCHHHHHHHHHhhhhhcccccc--c-----CCC
Q 030315 25 ALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET-SKIIDCLEFIRSKNLHLAGFRH--H-----DAS 96 (179)
Q Consensus 25 aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT-~~i~~~i~fik~~~l~~~~~~~--~-----~~~ 96 (179)
|||||+|-++++.+. ..+..+.-.++|+ ...+++++.+.+.......... . .+.
T Consensus 1 gidig~~~i~~~l~d------------------~~g~ii~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVD------------------LDGEIIYSESIPTPTSPEELLDALAELIERLLADYGRSGIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEE------------------TTSCEEEEEEEEHHSSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSE
T ss_pred CEEECCCEEEEEEEC------------------CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcccccEEEecccc
Confidence 799999999999977 1344456677777 4556666555442211100000 0 000
Q ss_pred C-CCceEEEEecC---chHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEE
Q 030315 97 A-SDKTLIKATGG---GAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMW 152 (179)
Q Consensus 97 ~-~~~~~i~aTGG---GA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty 152 (179)
- .....|.-+.- ....+.+.|++.+++++..+....|...|-.++-.....+.|.|
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~ 122 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFGVPVIIENDANAAALAEYWFGAAKDCDNFLY 122 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTTTTSSEEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccceEEEEecCCCcceeehhhcCccCCcceEEE
Confidence 0 00112222221 22447889999999999999999999998776654333334433
No 31
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=85.24 E-value=1.8 Score=37.65 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=32.3
Q ss_pred ceEEEEecCchHhhHHHHHHHhCC-Ccceeeh-hhHHHHhHHHH
Q 030315 100 KTLIKATGGGAYKFADLIKEKLGV-VLDKEDE-MDCLVTGANFL 141 (179)
Q Consensus 100 ~~~i~aTGGGA~Kf~dl~~~~lgv-~~~k~DE-MecLI~Gl~fL 141 (179)
-..|.+|||||.-+++.+++.++- .+...|+ --+.++|...+
T Consensus 274 ~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 274 IQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred ccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 357999999999999999998874 4555666 55788886543
No 32
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=85.06 E-value=1.2 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=38.1
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCccee-ehhhHHHHhHHHHHHh
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKF 144 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~-DEMecLI~Gl~fLL~~ 144 (179)
-|.+|||||. .+.+.+++++++++... +=++|++.|+.-.+++
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~~ 326 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSLEV 326 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHHC
Confidence 4999999998 78999999999988875 7799999999998865
No 33
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=84.60 E-value=20 Score=30.50 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=56.3
Q ss_pred eEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCe-EEEEEeec--cCHHHHHHHHHhhhhhcc---------cc
Q 030315 23 HLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGR-LHFAKFET--SKIIDCLEFIRSKNLHLA---------GF 90 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~-LhF~kFeT--~~i~~~i~fik~~~l~~~---------~~ 90 (179)
.+|||||||-++++-+. ..|+ +.-.++++ ...+++++.|.+...... ++
T Consensus 2 ~lgidig~t~i~~~l~d-------------------~~g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~igi 62 (303)
T PRK13310 2 YYGFDIGGTKIELGVFN-------------------EKLELQWEERVPTPRDSYDAFLDAVCELVAEADQRFGCKGSVGI 62 (303)
T ss_pred eEEEEeCCCcEEEEEEC-------------------CCCcEEEEEEecCCCcCHHHHHHHHHHHHHHHHhhcCCcceEEE
Confidence 58999999999999866 2333 44445554 345666655544211100 00
Q ss_pred cccCCCC-CCceEEEEe---cCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHH
Q 030315 91 RHHDASA-SDKTLIKAT---GGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFL 141 (179)
Q Consensus 91 ~~~~~~~-~~~~~i~aT---GGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fL 141 (179)
.- .+.. .....+..+ |=.-+.+.+.|++++++++..+..-.|..-|=.+.
T Consensus 63 a~-pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~ 116 (303)
T PRK13310 63 GI-PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWD 116 (303)
T ss_pred eC-CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhh
Confidence 00 0000 011122211 11224677889999999999999999988775554
No 34
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=84.48 E-value=1.4 Score=38.13 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHhCC-CcceeehhhHHHHhH
Q 030315 115 DLIKEKLGV-VLDKEDEMDCLVTGA 138 (179)
Q Consensus 115 dl~~~~lgv-~~~k~DEMecLI~Gl 138 (179)
..+++.+|+ ++..+..++|...|.
T Consensus 83 ~~l~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 83 AELKQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred HHHHHhcCCCeEEEEecHHHHHcCC
Confidence 367778998 599999999999985
No 35
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=84.36 E-value=0.94 Score=40.30 Aligned_cols=43 Identities=35% Similarity=0.504 Sum_probs=34.3
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCcceeeh-hhHHHHhHHHHHHh
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKEDE-MDCLVTGANFLLKF 144 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DE-MecLI~Gl~fLL~~ 144 (179)
=|++|||||. -..+.|++++|+++...|+ ..|.++|+.-++++
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred CEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 3999999996 5689999999999988555 88999999888764
No 36
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=83.45 E-value=6.1 Score=36.23 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc-CHHHHHHHHHhhhhhcccccccCCCC
Q 030315 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS-KIIDCLEFIRSKNLHLAGFRHHDASA 97 (179)
Q Consensus 19 ~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~-~i~~~i~fik~~~l~~~~~~~~~~~~ 97 (179)
.....+|||.|.|-+|.|-.+ .++.+....+.++ -.+.+.+-+++-- ...+. ..
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~-------------------d~~~I~~~~~~~t~g~p~~~~~l~~~l-e~l~~-----~~ 187 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLME-------------------DGKEILYGFYVSTKGRPIAEKALKEAL-EELGE-----KL 187 (396)
T ss_pred cCcEEEEEecCCcceeEEEEe-------------------CCCeEEEEEEEcCCCChhHHHHHHHHH-HHccc-----Ch
Confidence 356789999999999999966 2333443333333 3344444443321 11100 00
Q ss_pred CCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 98 SDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 98 ~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
.....+.+||=|=+ ++...|+.+. .+.|.-|..+|..||..
T Consensus 188 ~~I~~~~~TGYGR~----~v~~~~~aD~-~~~Ei~ah~kgA~~f~p 228 (396)
T COG1924 188 EEILGLGVTGYGRN----LVGAALGADK-VVVEISAHAKGARYFAP 228 (396)
T ss_pred heeeeeeeecccHH----HhhhhhcCCc-ceeeeehhHHHHHHhCC
Confidence 13567899998844 4444444443 36799999999999974
No 37
>PRK09698 D-allose kinase; Provisional
Probab=81.66 E-value=17 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=22.7
Q ss_pred HhhHHHHHHHhCCCcceeehhhHHHHhH
Q 030315 111 YKFADLIKEKLGVVLDKEDEMDCLVTGA 138 (179)
Q Consensus 111 ~Kf~dl~~~~lgv~~~k~DEMecLI~Gl 138 (179)
+...+.|++.+++++.......|...|=
T Consensus 94 ~~l~~~l~~~~~~pv~v~NDa~aaa~~E 121 (302)
T PRK09698 94 YDLADKLENTLNCPVFFSRDVNLQLLWD 121 (302)
T ss_pred CCHHHHHHHHhCCCEEEcchHhHHHHHH
Confidence 3466889999999999999999876653
No 38
>PTZ00288 glucokinase 1; Provisional
Probab=80.08 E-value=6 Score=36.26 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCCCCCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEee-c-cCHHHHHHHHHhhhhhcccccc
Q 030315 15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFE-T-SKIIDCLEFIRSKNLHLAGFRH 92 (179)
Q Consensus 15 ~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFe-T-~~i~~~i~fik~~~l~~~~~~~ 92 (179)
++++...-.+|+|||||-+.+.+|...... ...-...-++++ | +++.+.++|+.+..........
T Consensus 20 ~~~~~~~~~~~~DiGgt~~R~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (405)
T PTZ00288 20 ASWSSGPIFVGCDVGGTNARVGFAREVQHD-------------DSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLS 86 (405)
T ss_pred cccccCCeEEEEEecCCceEEEEEeccCCC-------------CCceeEEEEecccccccHHHHHHHHHHHHHHHHhcCc
Confidence 333445557999999999999998743210 012334456677 4 3566666665443211110000
Q ss_pred cCCCCCCceEEEE----ecCch----------HhhHHHHHHHhCC-CcceeehhhHHHHhHHHHH
Q 030315 93 HDASASDKTLIKA----TGGGA----------YKFADLIKEKLGV-VLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 93 ~~~~~~~~~~i~a----TGGGA----------~Kf~dl~~~~lgv-~~~k~DEMecLI~Gl~fLL 142 (179)
. -......+|.+ +||-+ ++..++=-..+|. ++.-+..|++...|+..|-
T Consensus 87 ~-~~~~~~a~iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~~~~~liNDfeA~aygi~~l~ 150 (405)
T PTZ00288 87 F-IQRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPPGRSALLNDLEAGAYGVLAVS 150 (405)
T ss_pred c-ccCcCeEEEEEeCceeCCEeeccccccccccccCCCCchhcCCCeEEEEEhHHHHhCcccccC
Confidence 0 00111233333 33433 1333332233775 5888999999999988753
No 39
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.47 E-value=2.9 Score=40.84 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=17.5
Q ss_pred CeEEEecCCceeEEEEEeec
Q 030315 22 SHLALDIGGSLIKVVYFLRS 41 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~ 41 (179)
..||||+|||.+-.|++...
T Consensus 3 ~~iGID~GGTfTDaV~~~~~ 22 (674)
T COG0145 3 LRIGIDVGGTFTDAVLLDED 22 (674)
T ss_pred eEEEEEcCCCcEeEEEEeCC
Confidence 47999999999999998843
No 40
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=79.40 E-value=7.1 Score=34.60 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=31.2
Q ss_pred ceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
...|.+|||||.-+++.|++.++--..-.|=.-+.++|...+-+
T Consensus 292 ~d~IiL~GGGA~ll~~~lk~~f~~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANIFFDSLSHWYSDVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHHHHHHHHHHcCCeEEcCChHHHHHHHHHHHHH
Confidence 35699999999999999999987321222334467777766654
No 41
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=78.25 E-value=12 Score=31.39 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.7
Q ss_pred EEEecCCceeEEEEEe
Q 030315 24 LALDIGGSLIKVVYFL 39 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~ 39 (179)
+|||+|||-+|.|-+.
T Consensus 1 lGIDgGgTkt~~vl~d 16 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVD 16 (271)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred CEEeeChheeeeEEEe
Confidence 6999999999999867
No 42
>PLN02666 5-oxoprolinase
Probab=77.10 E-value=3.6 Score=42.94 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc
Q 030315 19 SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS 71 (179)
Q Consensus 19 ~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~ 71 (179)
+....||||+|||++.+|.+.+ .+++++..|-+|+
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~------------------~~~~~~~~K~~st 41 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVP------------------GGSDFRVLKLLSV 41 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEec------------------CCCeEEEEEeCCC
Confidence 4567899999999999998662 3456888888873
No 43
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=76.98 E-value=3.7 Score=35.66 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=37.2
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCcceee-hhhHHHHhHHHHHHh
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKED-EMDCLVTGANFLLKF 144 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~D-EMecLI~Gl~fLL~~ 144 (179)
.|.+|||+|. .+.+.+++.+|+++...+ =+.|...|+.-++.+
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 5999999995 789999999999888764 799999999988755
No 44
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=75.24 E-value=4.7 Score=34.88 Aligned_cols=44 Identities=32% Similarity=0.527 Sum_probs=37.7
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCccee-ehhhHHHHhHHHHHHhc
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTGANFLLKFI 145 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~-DEMecLI~Gl~fLL~~i 145 (179)
.|.+|||+|. -+.+.+++.+++++... +=++|+..|+..+..++
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhhH
Confidence 4999999998 56899999999888764 58999999999998764
No 45
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=74.63 E-value=6 Score=34.52 Aligned_cols=39 Identities=33% Similarity=0.261 Sum_probs=27.0
Q ss_pred ceEEEEecCchHhhHHHHHHHhCC---Ccceee-hhhHHHHhH
Q 030315 100 KTLIKATGGGAYKFADLIKEKLGV---VLDKED-EMDCLVTGA 138 (179)
Q Consensus 100 ~~~i~aTGGGA~Kf~dl~~~~lgv---~~~k~D-EMecLI~Gl 138 (179)
...|.+|||||.-+++.|++.++. .+...| ---++++|+
T Consensus 273 ~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 273 IDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp -SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 357999999999999999999874 333332 344666664
No 46
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=68.33 E-value=7.3 Score=32.55 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.3
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
..-|||||.-+|+..+.
T Consensus 93 ~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKID 109 (248)
T ss_pred CEEEEecCCeeEEEEEC
Confidence 35899999999999865
No 47
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=65.13 E-value=14 Score=30.35 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||||.|-+|++=+.
T Consensus 2 ~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEEcccceEEEEEe
Confidence 58999999999999877
No 48
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=65.04 E-value=21 Score=27.96 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=30.7
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFL 141 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fL 141 (179)
...|.++||||. -+.+++.+.+|.++.+.+.=++-..|.-++
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~ 193 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALL 193 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHH
Confidence 578999999992 144556667899998887666666776554
No 49
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=65.01 E-value=19 Score=33.11 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.3
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||||+|.+|.+-|.
T Consensus 3 ~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFD 19 (493)
T ss_pred EEEEecCCCceEEEEEC
Confidence 58999999999998877
No 50
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=61.43 E-value=23 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.3
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceee-hhhHHHHhH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKED-EMDCLVTGA 138 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~D-EMecLI~Gl 138 (179)
...|.+|||||. ...+.+++.||+++...+ =..|.+.|+
T Consensus 222 ~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Ga 263 (267)
T PRK15080 222 VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGI 263 (267)
T ss_pred CCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHH
Confidence 357999999994 567899999998776522 224555554
No 51
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=61.05 E-value=7.6 Score=35.81 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.4
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||||+|.+|++-+.
T Consensus 2 ~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE 18 (505)
T ss_pred EEEEeccccceEEEEEc
Confidence 48999999999998877
No 52
>PRK13320 pantothenate kinase; Reviewed
Probab=60.68 E-value=23 Score=29.99 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.9
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
+.+.||||-|-+|..+|+
T Consensus 3 M~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE 20 (244)
T ss_pred eEEEEEeCCCcEEEEEEE
Confidence 679999999999999988
No 53
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=58.94 E-value=79 Score=24.16 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=27.2
Q ss_pred HhhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 111 ~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
.+|.+.+++.+++++.-.||--+...--..|.
T Consensus 72 ~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~ 103 (130)
T TIGR00250 72 QKFANRLEGRFGVPVVLWDERLSTVEAESGLF 103 (130)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHH
Confidence 48999999999999999999888877766665
No 54
>PRK11678 putative chaperone; Provisional
Probab=56.56 E-value=25 Score=32.56 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=35.4
Q ss_pred eEEEEecCchH--hhHHHHHHHhC-CCcceeehhhHHHHhHHHHH
Q 030315 101 TLIKATGGGAY--KFADLIKEKLG-VVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 101 ~~i~aTGGGA~--Kf~dl~~~~lg-v~~~k~DEMecLI~Gl~fLL 142 (179)
..|.+|||++. ...+.+++.+| .++..-|.|.++..|+-..-
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a 445 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWA 445 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHH
Confidence 57899999987 66788888887 68889999999999987653
No 55
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=54.75 E-value=6.4 Score=32.21 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.5
Q ss_pred CeEEEecCCceeE
Q 030315 22 SHLALDIGGSLIK 34 (179)
Q Consensus 22 ~~~aiDIGGTL~K 34 (179)
.+-|||||.||+-
T Consensus 121 A~aGiDIGdTlIG 133 (172)
T PF04260_consen 121 ADAGIDIGDTLIG 133 (172)
T ss_dssp BSEEEEESS---G
T ss_pred eccCcccccceee
Confidence 5789999999974
No 56
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=53.76 E-value=35 Score=28.81 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=15.7
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
|++||||=|-+|+..|.
T Consensus 1 ~L~iDiGNT~i~~g~~~ 17 (243)
T TIGR00671 1 LLLIDVGNTRIVFALNS 17 (243)
T ss_pred CEEEEECCCcEEEEEEE
Confidence 58999999999999987
No 57
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=52.49 E-value=14 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCCCCeEEEecCCceeEEEEEee
Q 030315 18 ESQISHLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~~ 40 (179)
.+.-..+|||+|||-.+++..+=
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L 82 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVEL 82 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEE
Confidence 45667999999999999999773
No 58
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=52.27 E-value=44 Score=24.98 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=32.0
Q ss_pred EEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeec--cCHHHHHHHHHhhh
Q 030315 24 LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFET--SKIIDCLEFIRSKN 84 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT--~~i~~~i~fik~~~ 84 (179)
+|||+|-...=++++.+ .+..+...+|+. ..+.++++|+++..
T Consensus 2 vGiDv~k~~~~v~v~~~------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 46 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDP------------------NGEKLRRFKFENDPAGLEKLLDWLASLG 46 (144)
T ss_pred EEEEcccCeEEEEEEcC------------------CCcEEEEEEEeccccchhHHhhhhcccc
Confidence 79999988777777662 234666778887 57888888887763
No 59
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=51.90 E-value=7.7 Score=31.66 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred eEEEEecCchHhhHHHHHHHh--CCCcceeehhhHHHHhHH
Q 030315 101 TLIKATGGGAYKFADLIKEKL--GVVLDKEDEMDCLVTGAN 139 (179)
Q Consensus 101 ~~i~aTGGGA~Kf~dl~~~~l--gv~~~k~DEMecLI~Gl~ 139 (179)
..|.+|||||+...+-..-.. |.-+.-.-.++.+..-++
T Consensus 73 ~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~ 113 (172)
T COG0703 73 NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ 113 (172)
T ss_pred CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc
Confidence 479999999998766543222 223333445555554443
No 60
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=51.30 E-value=27 Score=30.77 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=24.6
Q ss_pred EEEEecCchH--hhHHHHHHHhCCCcceeeh
Q 030315 102 LIKATGGGAY--KFADLIKEKLGVVLDKEDE 130 (179)
Q Consensus 102 ~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DE 130 (179)
.|.+|||||. ...+++++.||.+++..+-
T Consensus 317 gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 317 GIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred EEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 4999999998 7889999999988876653
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=50.81 E-value=40 Score=31.43 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.1
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||||+|-+|.|-..
T Consensus 4 ~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMD 20 (432)
T ss_pred EEEEEcCchhEEEEEEc
Confidence 58999999999988866
No 62
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=50.73 E-value=75 Score=25.00 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=26.7
Q ss_pred CCeEEEecCCceeE----EEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhh
Q 030315 21 ISHLALDIGGSLIK----VVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKN 84 (179)
Q Consensus 21 ~~~~aiDIGGTL~K----lVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~ 84 (179)
...+++|.-|||++ .+|.... .. .+++...+.++++.+++++
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~-------------------~~---~~~~~pgv~e~L~~Lk~~G 58 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSA-------------------SD---WRFLYPEIPAKLQELDDEG 58 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCCh-------------------HH---eEEecCCHHHHHHHHHHCC
Confidence 35789999999996 2442211 11 2223347889999998765
No 63
>PRK04123 ribulokinase; Provisional
Probab=50.29 E-value=31 Score=32.13 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=33.0
Q ss_pred ceEEEEecCc-h--HhhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGG-A--YKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGG-A--~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.++||| | --+..++.+.+|.+|.+.++=|+...|.-.+-
T Consensus 439 ~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA 484 (548)
T PRK04123 439 VEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFA 484 (548)
T ss_pred cceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHH
Confidence 3579999999 4 34567777889999988877777777877764
No 64
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=49.90 E-value=37 Score=30.24 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.3
Q ss_pred EEEecCCceeEEEEEe
Q 030315 24 LALDIGGSLIKVVYFL 39 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~ 39 (179)
+|+||||--+|++...
T Consensus 1 ~G~DiGGA~~K~a~~~ 16 (318)
T TIGR03123 1 LGIDIGGANTKAAELD 16 (318)
T ss_pred CccccccceeeeEEec
Confidence 5899999999999865
No 65
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.85 E-value=15 Score=34.35 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=15.4
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|+|.+|.+-|.
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 47999999999999887
No 66
>PRK13331 pantothenate kinase; Reviewed
Probab=48.96 E-value=59 Score=27.91 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.0
Q ss_pred CCCCeEEEecCCceeEEEEEe
Q 030315 19 SQISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 19 ~~~~~~aiDIGGTL~KlVYf~ 39 (179)
....+++||||=|-+|+.+|+
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE
Confidence 456789999999999999998
No 67
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=48.61 E-value=52 Score=30.94 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCCCCCCCeEEEecCCceeEEEEEeec
Q 030315 14 GDESESQISHLALDIGGSLIKVVYFLRS 41 (179)
Q Consensus 14 ~~~~~~~~~~~aiDIGGTL~KlVYf~~~ 41 (179)
|.+ ++.-..++||.|||--|+|-..=.
T Consensus 69 p~g-~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 69 PTG-NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCC-CCCCCEEEEecCCceEEEEEEEeC
Confidence 344 788899999999999999997633
No 68
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=48.56 E-value=29 Score=31.09 Aligned_cols=44 Identities=36% Similarity=0.597 Sum_probs=31.9
Q ss_pred ceEEEEecCchHh--hHHHHHHHhC-C-Cc---ceeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAYK--FADLIKEKLG-V-VL---DKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~K--f~dl~~~~lg-v-~~---~k~DEMecLI~Gl~fLL~ 143 (179)
...|.+|||=||- |-+.|.+++. + ++ --+|||++|..|..=+|+
T Consensus 297 vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRVL~ 347 (358)
T COG3426 297 VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRVLR 347 (358)
T ss_pred CCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHHhh
Confidence 4679999999983 4455555544 1 22 248999999999988875
No 69
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=48.39 E-value=1.6e+02 Score=24.66 Aligned_cols=31 Identities=0% Similarity=-0.034 Sum_probs=24.9
Q ss_pred HhhHHHHHHHhCCCcceeehhhHHHHhHHHH
Q 030315 111 YKFADLIKEKLGVVLDKEDEMDCLVTGANFL 141 (179)
Q Consensus 111 ~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fL 141 (179)
..+.+.|++++++++..+.+..|...|=.+.
T Consensus 86 ~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~ 116 (291)
T PRK05082 86 FPLVQTLEQLTDLPTIALNDAQAAAWAEYQA 116 (291)
T ss_pred CChHHHHHHHhCCCEEEECcHHHHHHHHHHh
Confidence 3467789999999999999999988775443
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=47.51 E-value=48 Score=31.00 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=34.4
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.++||||. -+..++.+.+|.++.+.++=|+...|+-.+-
T Consensus 444 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA 488 (541)
T TIGR01315 444 IKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLG 488 (541)
T ss_pred ccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHH
Confidence 357999999985 3555666778999999998888889988875
No 71
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=46.04 E-value=44 Score=27.93 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred eEEEEecCchH--hhHHHHHHHhCCCccee-ehhhHHHHh
Q 030315 101 TLIKATGGGAY--KFADLIKEKLGVVLDKE-DEMDCLVTG 137 (179)
Q Consensus 101 ~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~-DEMecLI~G 137 (179)
..|.+|||||. -..+.+++.||+++... +=..|.+.|
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~G 235 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLG 235 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhhe
Confidence 47999999994 35788889999877542 223344444
No 72
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=45.60 E-value=63 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=31.1
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
..+|.++||||. -+-+++.+.+|+++...++ |+-..|.-++-
T Consensus 376 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a 419 (471)
T PRK10640 376 FSQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQ 419 (471)
T ss_pred cceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHH
Confidence 367999999986 2445556678999987776 78777777664
No 73
>PRK13326 pantothenate kinase; Reviewed
Probab=44.64 E-value=59 Score=27.92 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCeEEEecCCceeEEEEEe
Q 030315 21 ISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 21 ~~~~aiDIGGTL~KlVYf~ 39 (179)
.+.++||||=|-+|+..|.
T Consensus 6 ~~~L~IDiGNT~ik~glf~ 24 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYK 24 (262)
T ss_pred cEEEEEEeCCCeEEEEEEE
Confidence 4779999999999999988
No 74
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=44.17 E-value=17 Score=32.26 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=36.7
Q ss_pred CCCeEEEecCCceeEEEEEeecCCCCCCCCCCCCCCCCCCCCeEEEEEeecc-CHHHHHHHHHhhhhhcccccccCCCCC
Q 030315 20 QISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETS-KIIDCLEFIRSKNLHLAGFRHHDASAS 98 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~~~g~~~~~~~~G~LhF~kFeT~-~i~~~i~fik~~~l~~~~~~~~~~~~~ 98 (179)
.+..+||||||--+|++- + + ...-.++++.||-= +=++.-+-|++.. +.. ..
T Consensus 2 ~~kilGiDIGGAntk~a~-~--D---------------G~~~~~d~~YlPMWk~k~rL~~~Lkei~-~k~--------~~ 54 (330)
T COG1548 2 KMKILGIDIGGANTKIAS-S--D---------------GDNYKIDHIYLPMWKKKDRLEETLKEIV-HKD--------NV 54 (330)
T ss_pred CceEEEeeccCccchhhh-c--c---------------CCeeeeeEEEeccccchhHHHHHHHHHh-ccC--------Cc
Confidence 356799999999999987 3 0 11223689999952 2244444454432 111 11
Q ss_pred CceEEEEecC
Q 030315 99 DKTLIKATGG 108 (179)
Q Consensus 99 ~~~~i~aTGG 108 (179)
..+-++.||=
T Consensus 55 ~~vgvvMTaE 64 (330)
T COG1548 55 DYVGVVMTAE 64 (330)
T ss_pred ceeEEEeeHH
Confidence 2456888874
No 75
>PRK00047 glpK glycerol kinase; Provisional
Probab=43.03 E-value=22 Score=32.71 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.5
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|+|.+|.+-|.
T Consensus 7 ~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 7 ILALDQGTTSSRAIIFD 23 (498)
T ss_pred EEEEecCCCceEEEEEC
Confidence 68999999999988877
No 76
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.67 E-value=12 Score=28.16 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.7
Q ss_pred cCcchhhHhhhh
Q 030315 164 MIYTLIFLLILA 175 (179)
Q Consensus 164 ~~yp~~~~ni~~ 175 (179)
.||||++.|-..
T Consensus 31 DpyPFilLnl~l 42 (108)
T PF06210_consen 31 DPYPFILLNLVL 42 (108)
T ss_pred CCccHHHHHHHH
Confidence 689999999543
No 77
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=40.86 E-value=9.3 Score=31.27 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.0
Q ss_pred CeEEEecCCceeEE
Q 030315 22 SHLALDIGGSLIKV 35 (179)
Q Consensus 22 ~~~aiDIGGTL~Kl 35 (179)
.+-|||||.||+-+
T Consensus 121 A~aGiDIGdT~IGM 134 (172)
T TIGR01440 121 APAGIDIGDTLIGM 134 (172)
T ss_pred cccCcccccceeee
Confidence 57899999999864
No 78
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=40.50 E-value=27 Score=25.96 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.7
Q ss_pred EEEecCCceeEEEEEe
Q 030315 24 LALDIGGSLIKVVYFL 39 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~ 39 (179)
++||||++-++++-+.
T Consensus 2 ~~iDiGs~~~~~~i~~ 17 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAE 17 (120)
T ss_dssp EEEEE-SSSEEEEEEE
T ss_pred EEEEcCCCcEEEEEEE
Confidence 6899999999999888
No 79
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=39.92 E-value=24 Score=33.25 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCeEEEecCCceeEEEEEeecCCCC--C--CCCCCCCCCCC-CCCCeEEEEEeecc-CH--HHHHHHHHhhhhhcccccc
Q 030315 21 ISHLALDIGGSLIKVVYFLRSNGSG--G--SVDDSGKKSDP-VLEGRLHFAKFETS-KI--IDCLEFIRSKNLHLAGFRH 92 (179)
Q Consensus 21 ~~~~aiDIGGTL~KlVYf~~~~~~~--~--~~~~~g~~~~~-~~~G~LhF~kFeT~-~i--~~~i~fik~~~l~~~~~~~ 92 (179)
+-.+|||||.|.++||+ |+-.-+. . ...+--..+.. .-...+||.=+.+. .| +..-+|+++ .....++.+
T Consensus 3 i~SVGIDIGTSTTQlvf-Srl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~al~~iv~~-eY~~Agi~p 80 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVF-SRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAEALKEIVEE-EYRKAGITP 80 (473)
T ss_pred eEEEEEeecCCceeEEE-EEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHHHHHHHHHH-HHHHcCCCH
Confidence 45689999999999999 5533110 0 00000000000 02444666666542 33 445555533 334433332
Q ss_pred cCCCCCCceEEEEecCchHhhH
Q 030315 93 HDASASDKTLIKATGGGAYKFA 114 (179)
Q Consensus 93 ~~~~~~~~~~i~aTGGGA~Kf~ 114 (179)
. +-...-|.+||==|.|=.
T Consensus 81 ~---~I~TGAVIITGETArKeN 99 (473)
T PF06277_consen 81 E---DIDTGAVIITGETARKEN 99 (473)
T ss_pred H---HCccccEEEecchhhhhh
Confidence 1 112456888888777643
No 80
>PRK13690 hypothetical protein; Provisional
Probab=39.73 E-value=9.7 Score=31.47 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=12.1
Q ss_pred CeEEEecCCceeEE
Q 030315 22 SHLALDIGGSLIKV 35 (179)
Q Consensus 22 ~~~aiDIGGTL~Kl 35 (179)
.+-|||||.||+-+
T Consensus 128 A~AGiDIGdT~IGM 141 (184)
T PRK13690 128 AHAGIDIGDTLIGM 141 (184)
T ss_pred eccCcccccceeee
Confidence 67899999999864
No 81
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=39.23 E-value=33 Score=31.56 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=34.5
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.+|||||- -+...+.+.+|.++.+.+.=++-..|+-++-
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a 444 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAA 444 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHH
Confidence 357999999986 5667778888999988776778888888775
No 82
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.13 E-value=35 Score=30.93 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.6
Q ss_pred CeEEEecCCceeEEEEEeec
Q 030315 22 SHLALDIGGSLIKVVYFLRS 41 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~ 41 (179)
.-+|||||-|.+|+|-.++.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~ 30 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRS 30 (354)
T ss_pred ceeeEeeccceEEEEEEccc
Confidence 47999999999999998843
No 83
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=38.64 E-value=31 Score=29.83 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=15.5
Q ss_pred CCCCeEEEecCCceeEEEEEe
Q 030315 19 SQISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 19 ~~~~~~aiDIGGTL~KlVYf~ 39 (179)
..-.-+.+|||||.+.+.-..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEE
T ss_pred CCCCEEEEeCCCCEEEEEEEE
Confidence 345789999999999999976
No 84
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=38.59 E-value=26 Score=32.98 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.1
Q ss_pred CCCeEEEecCCceeEEEEEeecC
Q 030315 20 QISHLALDIGGSLIKVVYFLRSN 42 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~~~~ 42 (179)
.+-.+|||||.|.++||+ |+-.
T Consensus 5 ~i~SVGIDIGTsTTqlvf-Srl~ 26 (475)
T PRK10719 5 ELLSVGIDIGTTTTQVIF-SRLE 26 (475)
T ss_pred EEEEEEEeccCceEEEEE-EEEE
Confidence 456799999999999999 6543
No 85
>PTZ00107 hexokinase; Provisional
Probab=38.49 E-value=1.2e+02 Score=28.45 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred CCCCCeEEEecCCceeEEEEEe
Q 030315 18 ESQISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~ 39 (179)
.+.-..+|||.|||-.+++..+
T Consensus 71 ~E~G~fLAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 71 KEKGVYYAIDFGGTNFRAVRVS 92 (464)
T ss_pred CccceEEEEecCCceEEEEEEE
Confidence 4566799999999999999977
No 86
>PRK10331 L-fuculokinase; Provisional
Probab=38.49 E-value=41 Score=30.72 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|.|-+|.+-|.
T Consensus 4 ~lgID~GTt~~Ka~l~d 20 (470)
T PRK10331 4 ILVLDCGATNVRAIAVD 20 (470)
T ss_pred EEEEecCCCceEEEEEc
Confidence 68999999999998877
No 87
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=38.31 E-value=21 Score=31.83 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.9
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
.-|.+|||||.++++-+.
T Consensus 129 ~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CEEEEEcCccceeeEEec
Confidence 479999999999999865
No 88
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=38.02 E-value=22 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=22.3
Q ss_pred EEEEecCchHhh-HHHHHHHhCCCcceeehhhH
Q 030315 102 LIKATGGGAYKF-ADLIKEKLGVVLDKEDEMDC 133 (179)
Q Consensus 102 ~i~aTGGGA~Kf-~dl~~~~lgv~~~k~DEMec 133 (179)
.|.+-|=.|++| .+.+.+..|+++...+|+.+
T Consensus 29 DivL~G~ef~e~~~~~~l~~~~lkvy~i~ELg~ 61 (85)
T PF08967_consen 29 DIVLVGPEFYEFLSEEVLEVSGLKVYVIEELGS 61 (85)
T ss_dssp -EEEE-HHHHHHHHH---EETTEEEEE-GGGTT
T ss_pred CEEEEcHHHHHHHHHHHHHhhCceEEEHHhcCC
Confidence 478999999999 56667788999999999853
No 89
>COG3933 Transcriptional antiterminator [Transcription]
Probab=37.93 E-value=53 Score=30.90 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.9
Q ss_pred CceEEEEec-CchHhhHHHHHHHh
Q 030315 99 DKTLIKATG-GGAYKFADLIKEKL 121 (179)
Q Consensus 99 ~~~~i~aTG-GGA~Kf~dl~~~~l 121 (179)
.-.+.|+|| |+|.|+..++.+..
T Consensus 243 AlvttC~TG~GtA~klk~~l~~~~ 266 (470)
T COG3933 243 ALVTTCITGEGTAEKLKKVLEEII 266 (470)
T ss_pred EEEEEeccCCcHHHHHHHHHHhcc
Confidence 457899999 77999999998644
No 90
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only]
Probab=37.51 E-value=54 Score=24.83 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCCCeEEEecCCceeEEEEEeecC
Q 030315 18 ESQISHLALDIGGSLIKVVYFLRSN 42 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~~~~ 42 (179)
.+.-+|++||.|--.+-.+|.-+..
T Consensus 4 d~k~awf~iDLG~~vip~~y~lrh~ 28 (113)
T KOG4276|consen 4 DDKNAWFAIDLGLEVIPTAYTLRHA 28 (113)
T ss_pred CCcceeEEEecCceEeeeeeeeeec
Confidence 4567899999999999999977543
No 91
>PRK10331 L-fuculokinase; Provisional
Probab=36.64 E-value=70 Score=29.19 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=32.7
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.++||||. -+-..+.+.+|.++.+.++=|+...|.-++-
T Consensus 390 ~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la 434 (470)
T PRK10331 390 ASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFG 434 (470)
T ss_pred CceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHH
Confidence 457999999985 2345556678999988887788888888775
No 92
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=36.46 E-value=28 Score=27.71 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.5
Q ss_pred EEEecCCceeEEEEEee
Q 030315 24 LALDIGGSLIKVVYFLR 40 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~~ 40 (179)
+|||||.|-+|+|=.+.
T Consensus 2 ~~lDIGs~~ik~vv~~~ 18 (187)
T smart00842 2 VGLDIGTSKIKALVAEV 18 (187)
T ss_pred EEEEeccceEEEEEEEE
Confidence 69999999999887553
No 93
>PLN02295 glycerol kinase
Probab=36.41 E-value=33 Score=31.78 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.3
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
-+|||||.|.+|.+-|..
T Consensus 2 vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEEecCCCceEEEEECC
Confidence 479999999999887773
No 94
>PRK15027 xylulokinase; Provisional
Probab=35.26 E-value=38 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.9
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
.+|||+|.|.+|.+-|..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 589999999999998873
No 95
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=35.16 E-value=39 Score=30.85 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.1
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
-+|||+|.|-+|.+-|..
T Consensus 3 ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINR 20 (465)
T ss_pred EEEEecCCCcEEEEEEcC
Confidence 479999999999999884
No 96
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=34.99 E-value=71 Score=27.81 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=14.4
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
+.|+||-|-|-+||+|.+
T Consensus 1 ~~i~iDdG~~~~K~~~~~ 18 (318)
T PF06406_consen 1 MKIAIDDGSTNVKLAWYE 18 (318)
T ss_dssp -EEEEEE-SSEEEEEEE-
T ss_pred CeEEEecCCCceeEEEec
Confidence 479999999999999986
No 97
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=34.62 E-value=50 Score=30.61 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=16.1
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
.+|||+|.|-+|.+-|..
T Consensus 5 ~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDL 22 (520)
T ss_pred EEEEecCCCceEEEEECC
Confidence 589999999999998884
No 98
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=34.12 E-value=68 Score=29.05 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.4
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcce
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDK 127 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k 127 (179)
..-|.+|||||. ...+++++.|+++++.
T Consensus 329 ~~givLtGG~a~lpgi~e~~~~~f~~~vri 358 (420)
T PRK09472 329 AAGIVLTGGAAQIEGLAACAQRVFHTQVRI 358 (420)
T ss_pred CCEEEEeCchhccccHHHHHHHHhCCCeEE
Confidence 356999999987 7889999999987765
No 99
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=33.67 E-value=39 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.9
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
.+|||||.|-+|.+-|..
T Consensus 4 ~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEecCCCceEEEEECC
Confidence 589999999999988773
No 100
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=33.10 E-value=1.7e+02 Score=23.69 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.5
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+.||||=|-+|++.++
T Consensus 1 ~L~iDiGNT~ik~~~~~ 17 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFD 17 (206)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEECCCeEEEEEEE
Confidence 47899999999999987
No 101
>COG4420 Predicted membrane protein [Function unknown]
Probab=32.97 E-value=21 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.353 Sum_probs=11.0
Q ss_pred cCcchhhHhhhhhh
Q 030315 164 MIYTLIFLLILALV 177 (179)
Q Consensus 164 ~~yp~~~~ni~~~~ 177 (179)
.|||||+.|-..-+
T Consensus 85 DpyPFi~LnLllS~ 98 (191)
T COG4420 85 DPYPFILLNLLLST 98 (191)
T ss_pred CCccHHHHHHHHHH
Confidence 58999999976443
No 102
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=32.41 E-value=47 Score=28.58 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=20.9
Q ss_pred CCCCeEEEEEeeccCHHHHHHHHHhh
Q 030315 58 VLEGRLHFAKFETSKIIDCLEFIRSK 83 (179)
Q Consensus 58 ~~~G~LhF~kFeT~~i~~~i~fik~~ 83 (179)
..|||+.|.+ ...+++++++||++.
T Consensus 210 ~~GGRvffv~-~~~d~~~~i~yLe~~ 234 (239)
T PF03744_consen 210 PKGGRVFFVD-GSIDIEELIDYLENQ 234 (239)
T ss_pred CCCCEEEEEe-CCCCHHHHHHHHhcC
Confidence 3699999999 566889999999654
No 103
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=32.10 E-value=53 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=20.3
Q ss_pred CCCCeEEEEEeeccCHHHHHHHHHhh
Q 030315 58 VLEGRLHFAKFETSKIIDCLEFIRSK 83 (179)
Q Consensus 58 ~~~G~LhF~kFeT~~i~~~i~fik~~ 83 (179)
..|||+.|.+=. .+++++++||.++
T Consensus 210 ~~GGRvffv~~~-~~~~~~i~yLE~~ 234 (242)
T PRK01322 210 PYGGRIFFVDDS-IDLEELISYLENK 234 (242)
T ss_pred CCCCEEEEEeCc-cCHHHHHHHHhcC
Confidence 369999999843 4799999999654
No 104
>PRK13324 pantothenate kinase; Reviewed
Probab=31.14 E-value=1.6e+02 Score=25.21 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.4
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
|.++||||=|-+|+..|+
T Consensus 1 MiL~iDiGNT~ik~gl~~ 18 (258)
T PRK13324 1 MLLVMDMGNSHIHIGVFD 18 (258)
T ss_pred CEEEEEeCCCceEEEEEE
Confidence 468999999999999987
No 105
>PRK13320 pantothenate kinase; Reviewed
Probab=30.69 E-value=1.1e+02 Score=25.73 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=24.5
Q ss_pred eEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 101 TLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 101 ~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
..+.+|||.|..+...++ ..... +=+=+.+|+..+.+
T Consensus 205 ~~vi~TGG~a~~l~~~l~----~~~~~--~p~Lvl~GL~~~~~ 241 (244)
T PRK13320 205 LLVILTGGDAPFLASRLK----NTIFA--DEHAVLKGLNRILE 241 (244)
T ss_pred CEEEEECCCHHHHHHhcC----CccEE--CcchHHHHHHHHHH
Confidence 578999999997776654 33322 23446788877654
No 106
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=29.95 E-value=40 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.4
Q ss_pred eEEEecCCceeEEEEE
Q 030315 23 HLALDIGGSLIKVVYF 38 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf 38 (179)
|+|||.|.|.+|+.+.
T Consensus 10 ~vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 10 DIGIDLGTANTLVYVK 25 (335)
T ss_pred ceEEEcCCCcEEEEEC
Confidence 5999999999999884
No 107
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=29.81 E-value=44 Score=31.03 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=12.7
Q ss_pred CeEEEecCCceeEEEEEeec
Q 030315 22 SHLALDIGGSLIKVVYFLRS 41 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~~~ 41 (179)
..+|||||.|-+|.|-+...
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCC
Confidence 45677777777776666633
No 108
>PRK13329 pantothenate kinase; Reviewed
Probab=29.72 E-value=1.1e+02 Score=25.99 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCCce--EEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHh
Q 030315 73 IIDCLEFIRSKNLHLAGFRHHDASASDKT--LIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKF 144 (179)
Q Consensus 73 i~~~i~fik~~~l~~~~~~~~~~~~~~~~--~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~ 144 (179)
|+.+++-+++.. .. .+.+|||.|..+...++ ......+. =+.+|+..+.+.
T Consensus 194 I~~~i~~~~~~~---------------~~~~~vilTGGda~~l~~~l~----~~~~~~~~--LvL~GL~~i~~~ 246 (249)
T PRK13329 194 VERMFRHLAQHC---------------GAEPECLLTGGAAWKLAPSLT----VPFELVDN--LVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHh---------------CCCCEEEEECCCHHHHHhhcC----CCCEECCC--cHHHHHHHHHhh
No 109
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=29.28 E-value=1e+02 Score=26.14 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEec--CchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 70 TSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATG--GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 70 T~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTG--GGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
-+.++++++++|++. ...++-.+| +..+--...|.+.+|+++..+. ++.--..+.=|+
T Consensus 90 ~~t~~eli~~ak~~p--------------~~~~~g~~g~g~~~hl~~~~l~~~~G~~~~~Vp-y~G~~~~~~all 149 (274)
T PF03401_consen 90 YKTLEELIEYAKANP--------------GKLTFGSSGPGSSDHLAAALLAKAAGIKFTHVP-YDGGAEALTALL 149 (274)
T ss_dssp -SSHHHHHHHHHCSC--------------CC-EEEESSTTSHHHHHHHHHHHHHT---EEEE--SSHHHHHHHHH
T ss_pred cccHHHHHHHHHhCC--------------CCeEEEecCCCchHHHHHHHHHHHhCCceEEEE-eCCccHHHHHHh
Confidence 357999999998863 134555564 3346666788889999886553 544444444444
No 110
>PLN02362 hexokinase
Probab=29.11 E-value=1.3e+02 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.3
Q ss_pred CCCCCeEEEecCCceeEEEEEe
Q 030315 18 ESQISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~ 39 (179)
.+.-..+|||.|||-..++..+
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 92 SEIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred CcceeEEEEecCCceEEEEEEE
Confidence 4667799999999999999977
No 111
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=29.11 E-value=38 Score=29.90 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.9
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.--|||||==+|+..+.
T Consensus 127 ~tIIDIGGQDsK~I~~d 143 (293)
T TIGR03192 127 RTILDMGGQDCKAIHCD 143 (293)
T ss_pred CEEEEeCCCceEEEEEc
Confidence 57799999999999975
No 112
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=28.67 E-value=32 Score=29.84 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
..-|||||==+|+..+.
T Consensus 99 ~tIiDIGGQD~K~I~~~ 115 (262)
T TIGR02261 99 RAVLDIGALHGRAIRMD 115 (262)
T ss_pred CEEEEeCCCceEEEEEc
Confidence 47799999999998864
No 113
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=28.33 E-value=47 Score=28.23 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.5
Q ss_pred CCCeEEEecCCceeEEEEEee
Q 030315 20 QISHLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~~ 40 (179)
.--.++||||.|-+|+|-.+.
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~ 43 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE 43 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC
Confidence 346899999999999887664
No 114
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=27.91 E-value=1.6e+02 Score=26.64 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=29.8
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.++||||. .+-+++.+.+|+++.... =|+...|.-++-
T Consensus 388 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a 431 (454)
T TIGR02627 388 ISQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQ 431 (454)
T ss_pred cCEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHH
Confidence 457999999985 234445667898887654 357788977765
No 115
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=27.66 E-value=87 Score=29.09 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.9
Q ss_pred EEEecCCceeEEEEEe
Q 030315 24 LALDIGGSLIKVVYFL 39 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~ 39 (179)
+|||.|.|-++++++.
T Consensus 2 iGID~Gt~~~~va~~~ 17 (602)
T PF00012_consen 2 IGIDLGTTNSKVAVFK 17 (602)
T ss_dssp EEEEE-SSEEEEEEEE
T ss_pred EEEEeccCCEEEEEEE
Confidence 6888888888888765
No 116
>PRK13331 pantothenate kinase; Reviewed
Probab=27.41 E-value=97 Score=26.62 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=25.5
Q ss_pred ceEEEEecCchHhhHHHHHHHhCCC---cceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAYKFADLIKEKLGVV---LDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~Kf~dl~~~~lgv~---~~k~DEMecLI~Gl~fLL 142 (179)
...+.+|||.|..+...++... .+ -...|+ +=+.+|+..+.
T Consensus 204 ~~~vi~TGG~a~~l~~~~~~~~-~~~~~~~~~~~-~LvL~GL~~i~ 247 (251)
T PRK13331 204 DGKIVLTGGDGELLHNYLQDLD-PELAQRLRVDP-NLIFWGIAAIR 247 (251)
T ss_pred CCEEEEECCCHHHHHHHhhccc-cccccccEECc-chHHHHHHHHH
Confidence 3579999999998888776221 11 123332 34567877665
No 117
>PLN02645 phosphoglycolate phosphatase
Probab=26.76 E-value=2.6e+02 Score=24.06 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=21.7
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCc---hHhhHHHHHHHhCCCcc
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGG---AYKFADLIKEKLGVVLD 126 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGG---A~Kf~dl~~~~lgv~~~ 126 (179)
...++++.+++++ ...+.+|+.+ ...+.+.++ .+|+++.
T Consensus 48 ga~e~l~~lr~~g---------------~~~~~~TN~~~~~~~~~~~~l~-~lGi~~~ 89 (311)
T PLN02645 48 GVPETLDMLRSMG---------------KKLVFVTNNSTKSRAQYGKKFE-SLGLNVT 89 (311)
T ss_pred CHHHHHHHHHHCC---------------CEEEEEeCCCCCCHHHHHHHHH-HCCCCCC
Confidence 3456666666553 3456777766 444444443 4666543
No 118
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=26.64 E-value=1.2e+02 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=33.0
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
...|.++||||. -.-..+.+.+|.++.+.+.=++-..|+-++-.
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~ 439 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGF 439 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHH
Confidence 467999999985 23444556678999888877888899888763
No 119
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=26.58 E-value=54 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
++|||+|.|.+|+ |+.
T Consensus 7 ~igIDlGt~~~~i-~~~ 22 (334)
T PRK13927 7 DLGIDLGTANTLV-YVK 22 (334)
T ss_pred eeEEEcCcceEEE-EEC
Confidence 6999999999997 444
No 120
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=26.33 E-value=1.4e+02 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.5
Q ss_pred EEEecCCceeEEEEEe
Q 030315 24 LALDIGGSLIKVVYFL 39 (179)
Q Consensus 24 ~aiDIGGTL~KlVYf~ 39 (179)
+|||||.|-+|++-+.
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 5899999999999877
No 121
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=26.29 E-value=49 Score=29.95 Aligned_cols=43 Identities=33% Similarity=0.556 Sum_probs=34.9
Q ss_pred EEEecCchHh--hHHHHHHHhCCCcce-eehhhHHHHhHHHHHHhc
Q 030315 103 IKATGGGAYK--FADLIKEKLGVVLDK-EDEMDCLVTGANFLLKFI 145 (179)
Q Consensus 103 i~aTGGGA~K--f~dl~~~~lgv~~~k-~DEMecLI~Gl~fLL~~i 145 (179)
+..|||||-- +-+++.++.++.+.. .|=|+|...|+...|.++
T Consensus 287 ivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 287 IVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred eEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 8999999964 457788888988865 566999999999988653
No 122
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=26.20 E-value=1.4e+02 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=32.5
Q ss_pred ceEEEEecCch-H--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGA-Y--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA-~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
..+|.++|||+ - .+..++.+.+|++|.+...=|+-..|.-.+-
T Consensus 436 ~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA 481 (536)
T TIGR01234 436 VEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFA 481 (536)
T ss_pred cceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHH
Confidence 46799999994 3 3456677788999988777778788877764
No 123
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=26.09 E-value=1.7e+02 Score=25.23 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.6
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
+++.||||=|.+|...++
T Consensus 1 ~~L~iDiGNT~~~~a~~~ 18 (251)
T COG1521 1 MLLLIDIGNTRIVFALYE 18 (251)
T ss_pred CeEEEEeCCCeEEEEEec
Confidence 578999999999999987
No 124
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=25.89 E-value=50 Score=29.09 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=15.2
Q ss_pred eEEEecCCceeEEEEEee
Q 030315 23 HLALDIGGSLIKVVYFLR 40 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~~ 40 (179)
.+|||||.|-+|+|=.+.
T Consensus 2 ~~~lDIGs~~ik~vv~~~ 19 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEV 19 (371)
T ss_pred EEEEEeccceEEEEEEEE
Confidence 469999999999987654
No 125
>PRK10444 UMP phosphatase; Provisional
Probab=25.75 E-value=4e+02 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=14.3
Q ss_pred eEEEEecCchH---hhHHHHHHHhCCCcc
Q 030315 101 TLIKATGGGAY---KFADLIKEKLGVVLD 126 (179)
Q Consensus 101 ~~i~aTGGGA~---Kf~dl~~~~lgv~~~ 126 (179)
..+.+|+.... .+.+.++ .+|+++.
T Consensus 35 ~~~~~Tn~~~~~~~~~~~~l~-~~G~~~~ 62 (248)
T PRK10444 35 PLVLLTNYPSQTGQDLANRFA-TAGVDVP 62 (248)
T ss_pred eEEEEeCCCCCCHHHHHHHHH-HcCCCCC
Confidence 45677777653 3455553 4666554
No 126
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=25.50 E-value=1.9e+02 Score=23.56 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHH---HHhCCCcceeehhhHHHHhHHHHH
Q 030315 73 IIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIK---EKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 73 i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~---~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
.+..++|+++.. ....+.++|||.+ ++.++ .++|+.=...|+|--+..=.|=++
T Consensus 12 ~~~~~~~l~~~~--------------~~~v~iV~GGG~~--A~~~r~~~~~~g~~~~~ad~mgilat~~na~~ 68 (203)
T cd04240 12 AVRLLRWLKTLS--------------GGGVVIVPGGGPF--ADVVRRYQERKGLSDAAAHWMAILAMEQYGYL 68 (203)
T ss_pred HHHHHHHHHhcc--------------CCCEEEEcCCcHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 677888886642 1357899999987 55554 356666667888887777776654
No 127
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.33 E-value=41 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.4
Q ss_pred EEecCCceeEEEEEeecC
Q 030315 25 ALDIGGSLIKVVYFLRSN 42 (179)
Q Consensus 25 aiDIGGTL~KlVYf~~~~ 42 (179)
|+|||.|-+|+|=.+...
T Consensus 1 g~dig~~~ik~v~~~~~~ 18 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDG 18 (239)
T ss_pred CCCcccceEEEEEEecCC
Confidence 689999999999977554
No 128
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=25.33 E-value=84 Score=29.14 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=33.5
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL 142 (179)
...|.++||||. -+-.++.+.+|+++.+.+.-|+...|+-++-
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA 454 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAA 454 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHH
Confidence 457999999985 2444556678999999998888888888875
No 129
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.32 E-value=1.4e+02 Score=23.93 Aligned_cols=68 Identities=15% Similarity=0.310 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCC----Ccceee-hhhHHHHhHHHHHHhcC
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV----VLDKED-EMDCLVTGANFLLKFIK 146 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv----~~~k~D-EMecLI~Gl~fLL~~i~ 146 (179)
-|++|++||.++++... ..... -|.+.+ .+.+++.+.. ++...| .-.++..-+.-+|++.|
T Consensus 18 ~l~~~i~~l~~~gl~~e------------GIFR~-~G~~~~-i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLreLP 83 (185)
T cd04373 18 FLEKCVEFIEATGLETE------------GIYRV-SGNKTH-LDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFSELP 83 (185)
T ss_pred HHHHHHHHHHHcCCCCC------------Ceeec-CCcHHH-HHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHhcCC
Confidence 46899999988765432 23444 333333 4455556553 221111 23466777777888889
Q ss_pred CccEEEe
Q 030315 147 KLLLMWM 153 (179)
Q Consensus 147 ~E~Fty~ 153 (179)
+-.++|+
T Consensus 84 ePlip~~ 90 (185)
T cd04373 84 DPLIPYS 90 (185)
T ss_pred chhccHH
Confidence 8888875
No 130
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.15 E-value=57 Score=32.05 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=16.0
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
..+++|+|||.+++.-+.
T Consensus 279 ~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 279 NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CEEEEEcCCcceeeeeee
Confidence 489999999999998766
No 131
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.03 E-value=1.3e+02 Score=24.73 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcce
Q 030315 70 TSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDK 127 (179)
Q Consensus 70 T~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k 127 (179)
+..-.++++|+++.+ ..++.+|||-. -|.+.+.+.||++...
T Consensus 79 ~~ga~elv~~lk~~G---------------~~v~iiSgg~~-~lv~~ia~~lg~d~~~ 120 (212)
T COG0560 79 TPGAEELVAALKAAG---------------AKVVIISGGFT-FLVEPIAERLGIDYVV 120 (212)
T ss_pred CccHHHHHHHHHHCC---------------CEEEEEcCChH-HHHHHHHHHhCCchhe
Confidence 345678888887765 46788888876 5888999999986644
No 132
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.78 E-value=1.3e+02 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCc--ceeehh
Q 030315 70 TSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVL--DKEDEM 131 (179)
Q Consensus 70 T~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~--~k~DEM 131 (179)
|.-|.+++.+|+.++ .++.+--||=..+.+-.++.||++. .+..+|
T Consensus 90 T~Gi~eLv~~L~~~~----------------~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l 137 (227)
T KOG1615|consen 90 TPGIRELVSRLHARG----------------TQVYLISGGFRQLIEPVAEQLGIPKSNIYANEL 137 (227)
T ss_pred CCCHHHHHHHHHHcC----------------CeEEEEcCChHHHHHHHHHHhCCcHhhhhhhee
Confidence 457888888887763 6788889999999999999999887 444443
No 133
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.78 E-value=1.3e+02 Score=24.48 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCC--Ccceee--hhhHHHHhHHHHHHhcCC
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV--VLDKED--EMDCLVTGANFLLKFIKK 147 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv--~~~k~D--EMecLI~Gl~fLL~~i~~ 147 (179)
=+.+|++||.++++... .-....|-.+ -.+.+++.+.- .....+ +-.++..-+.-+|++.|+
T Consensus 19 iv~~ci~~i~~~gl~~e------------GIfR~sG~~~--~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPe 84 (200)
T cd04408 19 VVVRCTAEIENRALGVQ------------GIYRISGSKA--RVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLKELPE 84 (200)
T ss_pred HHHHHHHHHHHcCCCCc------------ceeeCCCcHH--HHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHHhCCC
Confidence 36899999988765433 2344444432 24555555532 211112 334566666777788898
Q ss_pred ccEEEe
Q 030315 148 LLLMWM 153 (179)
Q Consensus 148 E~Fty~ 153 (179)
-.++|+
T Consensus 85 PLi~~~ 90 (200)
T cd04408 85 PVLPFQ 90 (200)
T ss_pred ccCCHH
Confidence 888774
No 134
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=24.48 E-value=1e+02 Score=26.90 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.8
Q ss_pred EEecCCceeEEEEEee
Q 030315 25 ALDIGGSLIKVVYFLR 40 (179)
Q Consensus 25 aiDIGGTL~KlVYf~~ 40 (179)
|||||.+.+|+|-.+.
T Consensus 1 GiDiG~~siK~v~l~~ 16 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK 16 (340)
T ss_dssp EEEE-SSEEEEEEEET
T ss_pred CeecCCCeEEEEEEEE
Confidence 7999999999999884
No 135
>CHL00094 dnaK heat shock protein 70
Probab=24.44 E-value=1.7e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=34.8
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcc-eeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLD-KEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~-k~DEMecLI~Gl~fLL~ 143 (179)
...|.++||++. +..+.+++.+|.++. ..+-.+|.+.|+-+.-.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa 375 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAG 375 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHH
Confidence 467999999997 678888888887654 36667899999988643
No 136
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=24.41 E-value=91 Score=25.84 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=29.6
Q ss_pred ceEEEEecCchHhhHHHHHHHhCCCcc-------eeehhhHHHH
Q 030315 100 KTLIKATGGGAYKFADLIKEKLGVVLD-------KEDEMDCLVT 136 (179)
Q Consensus 100 ~~~i~aTGGGA~Kf~dl~~~~lgv~~~-------k~DEMecLI~ 136 (179)
...+++||||-+-.++.|.+..|.+.. -.+||-|.|-
T Consensus 25 ~Kiv~iTGG~i~pia~kIaelTG~eaVdGFkt~vPdeEi~~vVI 68 (183)
T PF03612_consen 25 NKIVYITGGGIPPIADKIAELTGAEAVDGFKTSVPDEEIACVVI 68 (183)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHCCeecCCccCCCChHHeEEEEE
Confidence 567999999999999999999987542 2677777663
No 137
>PRK13322 pantothenate kinase; Reviewed
Probab=24.32 E-value=72 Score=26.99 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=16.4
Q ss_pred CeEEEecCCceeEEEEEe
Q 030315 22 SHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 22 ~~~aiDIGGTL~KlVYf~ 39 (179)
|.+.||||=|-+|...|+
T Consensus 1 M~L~IDiGNT~iK~~l~~ 18 (246)
T PRK13322 1 MILELDCGNSRLKWRVID 18 (246)
T ss_pred CEEEEEeCCCcEEEEEEc
Confidence 468999999999999988
No 138
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=24.20 E-value=1.4e+02 Score=23.96 Aligned_cols=68 Identities=15% Similarity=0.422 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCC----CcceeehhhHHHHhHHHHHHhcCC
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV----VLDKEDEMDCLVTGANFLLKFIKK 147 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv----~~~k~DEMecLI~Gl~fLL~~i~~ 147 (179)
=++.|++||.++++... .-+...|..+. .+.+++.++. .+........+..-+.-++++.|+
T Consensus 25 ~i~~~i~~l~~~gl~~e------------GIFR~~G~~~~--i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPe 90 (199)
T cd04390 25 LVEQCVDFIREHGLKEE------------GLFRLPGQANL--VKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELPE 90 (199)
T ss_pred HHHHHHHHHHHcCCCCC------------CeeeCCCCHHH--HHHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHhCCC
Confidence 46899999988775432 23555554433 4555666642 222333455566667777888888
Q ss_pred ccEEEe
Q 030315 148 LLLMWM 153 (179)
Q Consensus 148 E~Fty~ 153 (179)
-.++++
T Consensus 91 PLi~~~ 96 (199)
T cd04390 91 PVIPWA 96 (199)
T ss_pred ccCCHH
Confidence 777664
No 139
>PRK15027 xylulokinase; Provisional
Probab=24.13 E-value=1.5e+02 Score=27.06 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=29.7
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeeh-hhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDE-MDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DE-MecLI~Gl~fLL 142 (179)
...|.++||||. -....+.+.+|.++.+..+ -++-..|.-++-
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHH
Confidence 467999999974 2445556678888865543 336677877775
No 140
>PRK13328 pantothenate kinase; Reviewed
Probab=23.61 E-value=1.6e+02 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHh
Q 030315 73 IIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKF 144 (179)
Q Consensus 73 i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~ 144 (179)
|+.+++-+++.... ...+.+|||.|..+...+. ......+. =+.+|+..+.+.
T Consensus 201 i~~~i~~~~~~~~~-------------~~~vi~TGGda~~l~~~l~----~~~~~~p~--LvL~GL~~i~~~ 253 (255)
T PRK13328 201 IERAWRDLAARWQA-------------PVRLVLSGGAADAVAPALT----VPHTRHDN--LVLLGLALIAAA 253 (255)
T ss_pred HHHHHHHHHHHhCC-------------CCEEEEECCCHHHHHhhCC----CCCEECCC--cHHHHHHHHHhh
No 141
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=23.46 E-value=46 Score=21.53 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.1
Q ss_pred hhHHHHhHHHHH
Q 030315 131 MDCLVTGANFLL 142 (179)
Q Consensus 131 MecLI~Gl~fLL 142 (179)
|||+|+|..=+|
T Consensus 1 MDCVIQGfLT~L 12 (51)
T PF06706_consen 1 MDCVIQGFLTFL 12 (51)
T ss_pred CchhHHHHHHHH
Confidence 899999965444
No 142
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=22.94 E-value=62 Score=29.81 Aligned_cols=17 Identities=65% Similarity=1.056 Sum_probs=0.0
Q ss_pred EEecCCceeE-------EEEEeec
Q 030315 25 ALDIGGSLIK-------VVYFLRS 41 (179)
Q Consensus 25 aiDIGGTL~K-------lVYf~~~ 41 (179)
++||||.|+| ++|..++
T Consensus 172 CLdiGGRLik~drst~~v~Yi~~k 195 (473)
T COG4819 172 CLDIGGRLIKTDRSTGRVVYIHKK 195 (473)
T ss_pred eeecCcEEEEeecccceEEEEccc
No 143
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=22.70 E-value=70 Score=29.82 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=15.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|.|-+|.+-|.
T Consensus 3 ~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEEecCCCceEEEEEE
Confidence 58999999999999888
No 144
>PLN03184 chloroplast Hsp70; Provisional
Probab=22.68 E-value=1.8e+02 Score=28.24 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=35.1
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcce-eehhhHHHHhHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDK-EDEMDCLVTGANFLL 142 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k-~DEMecLI~Gl~fLL 142 (179)
...|.++||++. +..+.+++.+|.++.+ ++=.+|++.|+-+.-
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~a 411 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQA 411 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHH
Confidence 467999999997 6788888888876543 788899999998864
No 145
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=22.64 E-value=1.3e+02 Score=29.52 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHhhhhhcccccccCCCCCCceEE-EEecCchHhhHHHHHHHhCCCcc
Q 030315 71 SKIIDCLEFIRSKNLHLAGFRHHDASASDKTLI-KATGGGAYKFADLIKEKLGVVLD 126 (179)
Q Consensus 71 ~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i-~aTGGGA~Kf~dl~~~~lgv~~~ 126 (179)
.++++..+|+.++.++... +. ...+| .+|.|+||.|.....+.||+...
T Consensus 225 ~k~~a~~~~~~~~~~n~v~-----~~--~~~~lGII~~G~ay~yVkeAl~~lgl~~~ 274 (640)
T COG4231 225 EKWEAAEEFINANPLNRVE-----GS--DDAKLGIIASGIAYNYVKEALEDLGLDDE 274 (640)
T ss_pred HHHHHHHHHHhhCcccccc-----cC--CCCceEEEecCccHHHHHHHHHHcCCCce
Confidence 3577888999888766542 11 12445 89999999999999888886543
No 146
>PRK04123 ribulokinase; Provisional
Probab=22.53 E-value=74 Score=29.66 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.6
Q ss_pred eEEEecCCceeEEEEEe
Q 030315 23 HLALDIGGSLIKVVYFL 39 (179)
Q Consensus 23 ~~aiDIGGTL~KlVYf~ 39 (179)
.+|||+|.|.+|.+-|.
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 68999999999988877
No 147
>PLN02914 hexokinase
Probab=22.53 E-value=2.8e+02 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCceeEEEEEe
Q 030315 18 ESQISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 18 ~~~~~~~aiDIGGTL~KlVYf~ 39 (179)
.+.-..+|||+|||-.-++...
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 92 NEKGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred CeeeEEEEEecCCceEEEEEEE
Confidence 4566799999999999998866
No 148
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.27 E-value=3.5e+02 Score=20.71 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCeEEEEEeeccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCC
Q 030315 60 EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV 123 (179)
Q Consensus 60 ~G~LhF~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv 123 (179)
-|.+.+.-.+-....++|+.+++.+ .....+| |........+.+.+|+
T Consensus 119 ~~~~~~~d~~~~~~~~~l~~L~~~G---------------i~~~i~T-GD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 119 LGLFGLRDPLRPGAKEALQELKEAG---------------IKVAILT-GDNESTASAIAKQLGI 166 (215)
T ss_dssp EEEEEEEEEBHTTHHHHHHHHHHTT---------------EEEEEEE-SSEHHHHHHHHHHTTS
T ss_pred EEEEeecCcchhhhhhhhhhhhccC---------------cceeeee-cccccccccccccccc
Confidence 3445555555667888888887764 2456777 7778888888889998
No 149
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=22.17 E-value=1e+02 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCCCeEEEEEeeccCHHHHHHHHHhh
Q 030315 58 VLEGRLHFAKFETSKIIDCLEFIRSK 83 (179)
Q Consensus 58 ~~~G~LhF~kFeT~~i~~~i~fik~~ 83 (179)
..|||+.|.+=. .+++++++||.++
T Consensus 203 ~~GGRvffv~~~-~~l~~~i~yLE~~ 227 (232)
T TIGR01204 203 ELGGRVFFVSRK-NELSEYIHCLEQK 227 (232)
T ss_pred CCCCEEEEEeCC-CCHHHHHHHHhcC
Confidence 478999999854 6999999999654
No 150
>PLN02669 xylulokinase
Probab=22.12 E-value=1.2e+02 Score=28.76 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=32.4
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
..+|.+|||||. -....+.+.||..+.+.+.=++-..|.-++-.
T Consensus 446 ~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~ 491 (556)
T PLN02669 446 PKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAA 491 (556)
T ss_pred CcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHH
Confidence 467999999984 23445566788889887777777788877654
No 151
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.00 E-value=1.9e+02 Score=26.36 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=41.5
Q ss_pred EEEeeccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHH
Q 030315 65 FAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLV 135 (179)
Q Consensus 65 F~kFeT~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI 135 (179)
|.-=-|.+|.+.|+|..... +......|.++||||- -..+.|.+++++.....+=+..+-
T Consensus 264 f~~~l~~ei~Rslqfy~~~s-----------~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanPf~~~~ 325 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQS-----------EMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANPFAYMA 325 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------ccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCHHHHHh
Confidence 44434567777777775542 2224678999999996 467888899999888887766443
No 152
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.82 E-value=21 Score=24.69 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=10.2
Q ss_pred eEEEEecCchHhhHHHHHHHhC
Q 030315 101 TLIKATGGGAYKFADLIKEKLG 122 (179)
Q Consensus 101 ~~i~aTGGGA~Kf~dl~~~~lg 122 (179)
.+|.+|||--+.=.+++...|+
T Consensus 4 ~rVli~GgR~~~D~~~i~~~Ld 25 (71)
T PF10686_consen 4 MRVLITGGRDWTDHELIWAALD 25 (71)
T ss_pred CEEEEEECCccccHHHHHHHHH
Confidence 3455555554444444444443
No 153
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.58 E-value=2.2e+02 Score=26.88 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchH--hhHHHHHHHhCCCcce-eehhhHHHHhHHHH
Q 030315 73 IIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAY--KFADLIKEKLGVVLDK-EDEMDCLVTGANFL 141 (179)
Q Consensus 73 i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k-~DEMecLI~Gl~fL 141 (179)
++-+-+.|++.++... ....|.++||++. ...+.+++.+|.++.+ .+=.+|.+.|+-+.
T Consensus 308 ~~~i~~~l~~a~~~~~----------~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~ 369 (595)
T TIGR02350 308 KEPVRQALKDAGLSAS----------DIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQ 369 (595)
T ss_pred HHHHHHHHHHcCCCHh----------HCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHH
No 154
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.30 E-value=99 Score=18.22 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=15.7
Q ss_pred EEEEecCchHhhHHHHHHHh
Q 030315 102 LIKATGGGAYKFADLIKEKL 121 (179)
Q Consensus 102 ~i~aTGGGA~Kf~dl~~~~l 121 (179)
...-|||-+=+++.++++++
T Consensus 7 I~ISTnG~sP~la~~iR~~i 26 (30)
T PF14824_consen 7 IAISTNGKSPRLARLIRKEI 26 (30)
T ss_dssp EEEEESSS-HHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHH
Confidence 45679999999999999765
No 155
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.44 E-value=1.8e+02 Score=21.12 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=13.6
Q ss_pred ceEEEEecCchH---hhHHHHHHHh
Q 030315 100 KTLIKATGGGAY---KFADLIKEKL 121 (179)
Q Consensus 100 ~~~i~aTGGGA~---Kf~dl~~~~l 121 (179)
...+..|||..+ +..+.+.+.|
T Consensus 82 ~~~vfgt~g~~~~f~~~~~~~~~~l 106 (140)
T TIGR01753 82 KVALFGSGDWGYEFCEAVDDWEERL 106 (140)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHH
Confidence 467888988766 4444444443
No 156
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.22 E-value=2.3e+02 Score=22.57 Aligned_cols=69 Identities=12% Similarity=0.283 Sum_probs=41.2
Q ss_pred CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCC----Ccceee--hhhHHHHhHHHHHHhc
Q 030315 72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGV----VLDKED--EMDCLVTGANFLLKFI 145 (179)
Q Consensus 72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv----~~~k~D--EMecLI~Gl~fLL~~i 145 (179)
-+.+|++||.++++... .-+...|..+. -+.+++.++. ++...+ .-..+..-+.-++++.
T Consensus 19 ~l~~~i~~l~~~gl~~e------------GIFR~sg~~~~--v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReL 84 (187)
T cd04403 19 FVRLCIEAVEKRGLDVD------------GIYRVSGNLAV--IQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFREL 84 (187)
T ss_pred HHHHHHHHHHHhCCCcC------------ceeeecCcHHH--HHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcC
Confidence 37899999988765432 34666655443 4555666542 122222 2334555566677888
Q ss_pred CCccEEEec
Q 030315 146 KKLLLMWMV 154 (179)
Q Consensus 146 ~~E~Fty~~ 154 (179)
|+-.++++.
T Consensus 85 PepLi~~~~ 93 (187)
T cd04403 85 PEPLFPYSL 93 (187)
T ss_pred CCCcCCHHH
Confidence 888887753
No 157
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=20.18 E-value=2.1e+02 Score=24.16 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.5
Q ss_pred CCCeEEEecCCceeEEEEEe
Q 030315 20 QISHLALDIGGSLIKVVYFL 39 (179)
Q Consensus 20 ~~~~~aiDIGGTL~KlVYf~ 39 (179)
.-+.+-+||||-.+-++++.
T Consensus 111 ~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 111 DKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp TSSEEEEEEESSEEEEEEEE
T ss_pred cCCEEEEEECCCceEEEEEE
Confidence 34678999999999999987
No 158
>PLN02295 glycerol kinase
Probab=20.10 E-value=1.3e+02 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=33.3
Q ss_pred ceEEEEecCchH--hhHHHHHHHhCCCcceeehhhHHHHhHHHHHH
Q 030315 100 KTLIKATGGGAY--KFADLIKEKLGVVLDKEDEMDCLVTGANFLLK 143 (179)
Q Consensus 100 ~~~i~aTGGGA~--Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~ 143 (179)
...|.++||||. -+...+.+.+|.++.+.++=|+-..|.-++..
T Consensus 413 ~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~ 458 (512)
T PLN02295 413 LFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAG 458 (512)
T ss_pred cceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHH
Confidence 357999999985 34555667789999887777787888887753
Done!