BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030318
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P00947|SDIS_COMTE Steroid Delta-isomerase OS=Comamonas testosteroni GN=ksi PE=1 SV=2
          Length = 125

 Score = 33.9 bits (76), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFF 134
           VV+R+ A +N  DL  +  L ADD   ED +   P  G  A  +F+
Sbjct: 10  VVQRYVAALNAGDLDGIVALFADDATVEDPVGSEPRSGTAAIREFY 55


>sp|Q03735|NAB6_YEAST RNA-binding protein NAB6 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=NAB6 PE=1 SV=1
          Length = 1134

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 41  STPTTRKRLAPLSKLRIS-SSENNRT-AVDVASPLPTTSNV---DGDDGGGAVVVRRFYA 95
            TPT  +    LS ++IS ++EN+R  + D+ SPLP   ++   D +   GA++ ++  A
Sbjct: 549 QTPTIEEHSTHLSNVKISKTTENSRQFSQDIPSPLPLNEHMFMNDSNQSNGAIIPQQLIA 608


>sp|Q0AF54|RPOC_NITEC DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas eutropha
           (strain C91) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 30.0 bits (66), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 35  ISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFY 94
           I  +FIST   RK LA  +    +S    R  VDV   L    N  G DGG  VV++   
Sbjct: 780 ILQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVIIENDCGTDGG--VVMKALV 837

Query: 95  AGIN 98
            G N
Sbjct: 838 EGGN 841


>sp|Q32N66|PARI_XENLA PCNA-interacting partner OS=Xenopus laevis GN=parpbp PE=2 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 116 EDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAK 170
           ED + P+ +   + T D F K S+S+       + DI  + S+A   E+HFLS++
Sbjct: 79  EDTVVPKDYADIQKTYDLFLKNSNSLD------LIDIYEKISTAGSSEAHFLSSE 127


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.130    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,249,952
Number of Sequences: 539616
Number of extensions: 2453833
Number of successful extensions: 7979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 7809
Number of HSP's gapped (non-prelim): 237
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)