BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030319
MLMTSSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSS
ENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF
PRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL

High Scoring Gene Products

Symbol, full name Information P value
AT1G71480 protein from Arabidopsis thaliana 2.3e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030319
        (179 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2825304 - symbol:AT1G71480 species:3702 "Arabi...   203  2.3e-16   1


>TAIR|locus:2825304 [details] [associations]
            symbol:AT1G71480 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0006606 "protein import into nucleus"
            evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0008565
            "protein transporter activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] InterPro:IPR002075 Pfam:PF02136 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006810 EMBL:AC016163 GO:GO:0009535
            UniGene:At.43507 UniGene:At.75242 EMBL:BT010641 EMBL:AK175810
            EMBL:AK175869 EMBL:AK176645 EMBL:AK176822 EMBL:AK176871
            EMBL:AK316764 IPI:IPI00540601 RefSeq:NP_177304.1
            ProteinModelPortal:Q9C9I5 SMR:Q9C9I5 IntAct:Q9C9I5 STRING:Q9C9I5
            PRIDE:Q9C9I5 EnsemblPlants:AT1G71480.1 GeneID:843489
            KEGG:ath:AT1G71480 TAIR:At1g71480 eggNOG:NOG300686
            HOGENOM:HOG000243032 InParanoid:Q9C9I5 OMA:CVEPAIK PhylomeDB:Q9C9I5
            ArrayExpress:Q9C9I5 Genevestigator:Q9C9I5 Uniprot:Q9C9I5
        Length = 216

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/73 (57%), Positives = 47/73 (64%)

Query:    93 FYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLXXXXXXXXXXXXXLQFVIDDI 152
             FYA +N  DL+SV +LIA DCVYEDL+F  PF+GRKA L             LQFVIDDI
Sbjct:    78 FYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFGKFIESTSTDLQFVIDDI 137

Query:   153 SAEDSSANGKESH 165
             S EDSSA G   H
Sbjct:   138 STEDSSAVGVSWH 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       133   0.00091  102 3  11 22  0.40    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.43u 0.11s 12.54t   Elapsed:  00:00:00
  Total cpu time:  12.43u 0.11s 12.54t   Elapsed:  00:00:00
  Start:  Fri May 10 19:29:13 2013   End:  Fri May 10 19:29:13 2013

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