BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030320
MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSS
IVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK
DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSRSSI

High Scoring Gene Products

Symbol, full name Information P value
ASD1
alpha-L-arabinofuranosidase 1
protein from Arabidopsis thaliana 1.7e-43
ASD2
alpha-L-arabinofuranosidase 2
protein from Arabidopsis thaliana 6.9e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030320
        (179 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103172 - symbol:ASD1 "alpha-L-arabinofuranosi...   461  1.7e-43   1
TAIR|locus:2180652 - symbol:ASD2 "alpha-L-arabinofuranosi...   384  6.9e-35   1


>TAIR|locus:2103172 [details] [associations]
            symbol:ASD1 "alpha-L-arabinofuranosidase 1" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016798 "hydrolase activity, acting on glycosyl
            bonds" evidence=ISS] [GO:0046373 "L-arabinose metabolic process"
            evidence=IEA] [GO:0046556 "alpha-N-arabinofuranosidase activity"
            evidence=IEA;IDA] [GO:0009044 "xylan 1,4-beta-xylosidase activity"
            evidence=IDA] [GO:0045493 "xylan catabolic process" evidence=IDA]
            [GO:0005773 "vacuole" evidence=IDA] [GO:0009505 "plant-type cell
            wall" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
            [GO:0045492 "xylan biosynthetic process" evidence=RCA]
            InterPro:IPR010720 Pfam:PF06964 SMART:SM00813 GO:GO:0005773
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045493
            InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0048046 GO:GO:0005578
            EMBL:AC011708 CAZy:GH51 GO:GO:0046556 GO:GO:0046373 eggNOG:COG3534
            HOGENOM:HOG000115340 KO:K01209 GO:GO:0009505 EMBL:AY243509
            EMBL:AF372949 EMBL:AY143944 EMBL:AK222175 EMBL:AK220766
            IPI:IPI00526411 RefSeq:NP_187685.1 UniGene:At.20271
            ProteinModelPortal:Q9SG80 SMR:Q9SG80 STRING:Q9SG80 PaxDb:Q9SG80
            PRIDE:Q9SG80 EnsemblPlants:AT3G10740.1 GeneID:820243
            KEGG:ath:AT3G10740 TAIR:At3g10740 InParanoid:Q9SG80 OMA:LEYLGIG
            PhylomeDB:Q9SG80 ProtClustDB:CLSN2684036 Genevestigator:Q9SG80
            GO:GO:0009044 Uniprot:Q9SG80
        Length = 678

 Score = 461 (167.3 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 93/175 (53%), Positives = 118/175 (67%)

Query:     1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFREXXXXXXXXXXXXXXXXXX 60
             MASYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ+FF E                  
Sbjct:   500 MASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSL 559

Query:    61 XXXXXXXWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK 120
                    W++  N K ++RIK VN  +NS N++V V GL PN +++SGS KT LTS+N+ 
Sbjct:   560 VASAIS-WKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVM 616

Query:   121 DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFS 175
             DENSF++P KVVP  +LLE A +DM VV+ P+SF+SFDLL+ES  ++M  +DS S
Sbjct:   617 DENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSS 671


>TAIR|locus:2180652 [details] [associations]
            symbol:ASD2 "alpha-L-arabinofuranosidase 2" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016798 "hydrolase activity, acting on glycosyl
            bonds" evidence=ISS] [GO:0046373 "L-arabinose metabolic process"
            evidence=IEA] [GO:0046556 "alpha-N-arabinofuranosidase activity"
            evidence=IEA] InterPro:IPR010720 Pfam:PF06964 SMART:SM00813
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR017853
            SUPFAM:SSF51445 GO:GO:0005578 CAZy:GH51 GO:GO:0046556 GO:GO:0046373
            eggNOG:COG3534 HOGENOM:HOG000115340 InterPro:IPR008979
            SUPFAM:SSF49785 ProtClustDB:CLSN2684036 EMBL:AY243510 EMBL:AF149413
            EMBL:AY063925 EMBL:BT006062 IPI:IPI00517686 RefSeq:NP_197984.2
            UniGene:At.27144 ProteinModelPortal:Q8VZR2 SMR:Q8VZR2 STRING:Q8VZR2
            PaxDb:Q8VZR2 PRIDE:Q8VZR2 EnsemblPlants:AT5G26120.1 GeneID:832681
            KEGG:ath:AT5G26120 TAIR:At5g26120 InParanoid:Q8VZR2 OMA:GISHNDQ
            PhylomeDB:Q8VZR2 Genevestigator:Q8VZR2 Uniprot:Q8VZR2
        Length = 674

 Score = 384 (140.2 bits), Expect = 6.9e-35, P = 6.9e-35
 Identities = 85/180 (47%), Positives = 106/180 (58%)

Query:     1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFREXXXXXXXXXXXXXXXXXX 60
             M SYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ FF E                  
Sbjct:   499 MVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTLKGKTSSV 558

Query:    61 XXXXXXXWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK 120
                         N K +++IK VN    SVNLKV+V GL     K  GS K  LTS+++ 
Sbjct:   559 EASAISF---QTNGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVM 612

Query:   121 DENSFTEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRESV-AMKMEGADSFSRSS 178
             DENSF+ PN +VP  +LLE    +D+  V+ P+SF+SFDLL ES   +KM  +DS+ ++S
Sbjct:   613 DENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTESENVIKMPISDSYKKTS 672


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       154   0.00088  105 3  11 23  0.39    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  132 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.08u 0.22s 14.30t   Elapsed:  00:00:01
  Total cpu time:  14.09u 0.22s 14.31t   Elapsed:  00:00:01
  Start:  Fri May 10 19:30:19 2013   End:  Fri May 10 19:30:20 2013

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