BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030320
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1
SV=1
Length = 678
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/176 (63%), Positives = 139/176 (78%), Gaps = 3/176 (1%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSS 60
MASYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ+FF ESSGATLL +TL NS+S
Sbjct: 500 MASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTS- 558
Query: 61 IVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK 120
+VASAISW++ N K ++RIK VN +NS N++V V GL PN +++SGS KT LTS+N+
Sbjct: 559 LVASAISWKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVM 616
Query: 121 DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGADSFSR 176
DENSF++P KVVP +LLE A +DM VV+ P+SF+SFDLL+ES ++M +DS S
Sbjct: 617 DENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSSH 672
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 128/180 (71%), Gaps = 8/180 (4%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSS 60
M SYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ FF ESSGATLLN+T L +SS
Sbjct: 499 MVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNST-LKGKTSS 557
Query: 61 IVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK 120
+ ASAIS++ N K +++IK VN SVNLKV+V GL K GS K LTS+++
Sbjct: 558 VEASAISFQ--TNGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVM 612
Query: 121 DENSFTEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRESV-AMKMEGADSFSRSS 178
DENSF+ PN +VP +LLE +D+ V+ P+SF+SFDLL ES +KM +DS+ ++S
Sbjct: 613 DENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTESENVIKMPISDSYKKTS 672
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2
Length = 629
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 1 MASYAPLFVNANDRWWTPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTP+ I F N + + T SY+VQQ F + G T+ N T
Sbjct: 483 MAAYAPLLQLVNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------ 536
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSN 118
S + W S +A +K+ N +++ + V++ G +G T L S+
Sbjct: 537 SDSAFGPVYWVAS-SADDKYYVKLANYGADTQEITVTISG-------KTGGKLTVLADSD 588
Query: 119 LKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 155
K NS T+ TL+ + DM ++FT
Sbjct: 589 PKAFNSDTQ--------TLVTPSESDMKATNGKFTFT 617
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=abfA PE=3 SV=2
Length = 629
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 1 MASYAPLFVNANDRWWTPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTP+ I F N + + T SY+VQQ F + G T+ N T
Sbjct: 483 MAAYAPLLQLVNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------ 536
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSN 118
S + W S +A +K+ N +++ + V++ G +G T L S+
Sbjct: 537 SDSAFGPVYWVAS-SADDKYYVKLANYGADTQEITVTISG-------KTGGKLTVLADSD 588
Query: 119 LKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFT 155
K NS T+ TL+ + D+ ++FT
Sbjct: 589 PKAFNSDTQ--------TLVTPSESDVKATNGKFTFT 617
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1
Length = 628
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 1 MASYAPLFVNANDRWWTPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTPD I F N + + SY+VQQ F + G T+ T
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLISFTQNPNMVIDSTSYYVQQMFSVNRGDTIKEVT------ 535
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGL 99
S + W S + S+ +K+ N +++ + VS+ G+
Sbjct: 536 SDSAFGPVYWVASSSGSSYY-VKLANYGADTQEVSVSIPGM 575
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTPD I + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDG 98
S + W S S+ +K+ N S + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC
4308) GN=abfA PE=1 SV=2
Length = 628
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTPD I + + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDG 98
S + W S S+ +K+ N S + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori
GN=abfA PE=1 SV=1
Length = 628
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTPD I + + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDG 98
S + W S S+ +K+ N S + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N WTPD I + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDG 98
S + W S S+ +K+ N S + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-MKLANYGSETQDLTVSIPG 574
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1
Length = 825
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSG 45
+ASYAPL N + W PD + FN+ + + +Y VQ+ F + G
Sbjct: 497 LASYAPLLANEDYVQWRPDLVWFNNRASWNSANYEVQKLFMNNVG 541
>sp|Q59219|ABF2_BACOV Alpha-N-arabinofuranosidase 2 OS=Bacteroides ovatus GN=asdII PE=3
SV=1
Length = 514
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 21 IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSS---SIVASAISWEDSENAKSF 77
I+ ++ TP+Y+V + ++ AT L L S + +S S+N
Sbjct: 375 ILTKDKEMVLTPTYYVFKMYKVHQDATYLPIDLTCEKMSVRDNRTVPMVSATASKNKDGV 434
Query: 78 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPS 134
+ I + N+ ++ +++++ LG K + LT+S L D NSF +PN V P+
Sbjct: 435 IHISLSNVDADEAQ-EITIN-LG--DTKAKKAIGEILTASKLTDYNSFEKPNIVKPA 487
>sp|F0XS04|DAPB_GROCL Probable dipeptidyl-aminopeptidase B OS=Grosmannia clavigera
(strain kw1407 / UAMH 11150) GN=DAPB PE=3 SV=1
Length = 975
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 11 ANDRWWTPDA--IVFNSAQLYGTPSYWVQQFFRESSGA 46
A+ WW+PD I F G P Y VQ F SGA
Sbjct: 379 ASATWWSPDGRYIAFLRTNETGVPEYPVQYFLHRPSGA 416
>sp|Q97LQ9|THIE_CLOAB Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thiE PE=3 SV=1
Length = 211
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 27 QLYGTPSYWVQQFFR-ESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNL 85
++ G ++ +++ E +GAT L + N+S+ A A+S E+ +N K+ ++I VV +
Sbjct: 104 KIIGVSAHSIEEALEAERNGATYLGVGAIYNTSTKGDAQAVSLEELKNIKNSVKIPVVGI 163
Query: 86 ------RSNSVNLKVSVDGL 99
+N V ++ VDG+
Sbjct: 164 GGINEENANKV-IETGVDGI 182
>sp|Q6GKT9|GYRA_STAAR DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252)
GN=gyrA PE=3 SV=1
Length = 886
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N I+++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEIISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|P15753|GSPN_KLEPN Type II secretion system protein N OS=Klebsiella pneumoniae GN=pulN
PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 47 TLLNATLLTNSSSSIVASAISWEDSE--NAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSI 104
TL A+ N I ASA+ W+D+ + L + VN + + L +S
Sbjct: 131 TLPEASFNANGCRRIAASAVQWQDAALSSPAGLLELAQVNGKLSCTPAGALAVALTQDSH 190
Query: 105 KLSGSTKTQLTSSNLKDENSFTEPNKVVPS-LTLL--ENAAKD 144
+LS + + LT N +P + P+ LTLL +N KD
Sbjct: 191 QLSLTGQGVLTPDGRYTFNGTLQPRQAAPALLTLLVAQNGRKD 233
>sp|C5DL76|AIM3_LACTC Altered inheritance of mitochondria protein 3 OS=Lachancea
thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL
Y-8284) GN=AIM3 PE=3 SV=1
Length = 842
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 38 QFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNL 85
Q F E +G + + L + +S+ SW+DSE K LRIK+ N+
Sbjct: 345 QPFPEENGVSDVQE--LKSPTSATTVKPYSWKDSEELKESLRIKIQNV 390
>sp|P20831|GYRA_STAAU DNA gyrase subunit A OS=Staphylococcus aureus GN=gyrA PE=1 SV=3
Length = 889
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q932M0|GYRA_STAAM DNA gyrase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrA PE=1 SV=1
Length = 889
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q2FKQ0|GYRA_STAA3 DNA gyrase subunit A OS=Staphylococcus aureus (strain USA300)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q8NKW8|GYRA_STAAW DNA gyrase subunit A OS=Staphylococcus aureus (strain MW2) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q6GD84|GYRA_STAAS DNA gyrase subunit A OS=Staphylococcus aureus (strain MSSA476)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q2G2Q0|GYRA_STAA8 DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325)
GN=gyrA PE=1 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q99XG5|GYRA_STAAN DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) GN=gyrA
PE=1 SV=1
Length = 889
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|Q5HJZ0|GYRA_STAAC DNA gyrase subunit A OS=Staphylococcus aureus (strain COL) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N ++++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN--DEVISTMIAVKDLESE 611
Query: 75 KSFL 78
+FL
Sbjct: 612 DNFL 615
>sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1 OS=Mus musculus
GN=Fgfbp1 PE=1 SV=1
Length = 251
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 73 NAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNL--KDENSF----- 125
NAKS L+ +V R NLK+ + PN+ G+TK + + + ++ N
Sbjct: 135 NAKSVLKTRVCRKRFPESNLKL----VNPNA---RGNTKPRKEKAEVSAREHNKVQEAVS 187
Query: 126 TEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLL 160
TEPN+V +TL A + M + P D+L
Sbjct: 188 TEPNRVKEDITLNPAATQTM-AIRDPECLEDPDVL 221
>sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESE 611
Query: 75 KSFL 78
+ +L
Sbjct: 612 EDYL 615
>sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 17 TPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENA 74
T D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+
Sbjct: 554 THDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESE 611
Query: 75 KSFL 78
+ +L
Sbjct: 612 EDYL 615
>sp|Q7TSL0|IFNK_MOUSE Interferon kappa OS=Mus musculus GN=Ifnk PE=2 SV=1
Length = 199
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 102 NSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDL 159
++KL GST T LKD F P +++P + ++ + IS + T F+L
Sbjct: 33 ENVKLLGSTMTGFPLRCLKDITDFKFPKEILPYIQHMKREINAVSYRISSLALTIFNL 90
>sp|P01512|ATTB_HYACE Attacin-B OS=Hyalophora cecropia PE=2 SV=2
Length = 233
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 7 LFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAI 66
L V N R+ + + Q P WV R +GA +N+ +S ++V I
Sbjct: 11 LLVGVNSRYVLVEEPGYYDKQYEEQPQQWVNSRVRRQAGALTINS---DGTSGAVVKVPI 67
Query: 67 SWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDE 122
+ +EN K F + V+L +N + L + GL +++ G+T T+ D+
Sbjct: 68 T--GNENHK-FSALGSVDL-TNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,245,883
Number of Sequences: 539616
Number of extensions: 1963591
Number of successful extensions: 4757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 4718
Number of HSP's gapped (non-prelim): 68
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)