Query 030320
Match_columns 179
No_of_seqs 125 out of 683
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06964 Alpha-L-AF_C: Alpha-L 100.0 4.7E-38 1E-42 246.8 14.9 136 1-153 42-177 (177)
2 smart00813 Alpha-L-AF_C Alpha- 100.0 5.5E-33 1.2E-37 220.5 15.1 139 1-153 42-189 (189)
3 COG3534 AbfA Alpha-L-arabinofu 99.9 5.7E-25 1.2E-29 190.7 12.5 135 20-162 357-501 (501)
4 PF02055 Glyco_hydro_30: O-Gly 96.2 0.06 1.3E-06 48.9 11.0 85 9-99 382-474 (496)
5 PF02806 Alpha-amylase_C: Alph 92.8 1.1 2.3E-05 30.9 7.9 20 141-160 75-94 (95)
6 PF14509 GH97_C: Glycosyl-hydr 86.2 10 0.00022 27.2 11.0 75 77-160 28-102 (103)
7 PLN02808 alpha-galactosidase 77.4 13 0.00027 33.0 7.6 65 77-161 321-385 (386)
8 COG5520 O-Glycosyl hydrolase [ 76.6 27 0.00058 30.9 9.2 106 35-163 327-432 (433)
9 PLN02229 alpha-galactosidase 70.4 29 0.00062 31.2 8.2 67 77-162 354-420 (427)
10 PLN02692 alpha-galactosidase 69.0 28 0.0006 31.1 7.8 67 77-162 345-411 (412)
11 KOG2566 Beta-glucocerebrosidas 64.0 17 0.00036 32.5 5.3 60 8-69 406-473 (518)
12 TIGR02456 treS_nterm trehalose 63.3 25 0.00054 32.2 6.6 58 78-159 481-538 (539)
13 cd06466 p23_CS_SGT1_like p23_l 53.4 58 0.0013 21.3 5.6 23 129-151 52-74 (84)
14 PF11614 FixG_C: IG-like fold 52.0 27 0.00058 25.0 4.0 24 77-100 34-57 (118)
15 PF05506 DUF756: Domain of unk 52.0 72 0.0016 21.6 7.4 33 61-97 9-41 (89)
16 PRK12568 glycogen branching en 49.8 85 0.0019 30.2 7.9 74 78-160 653-729 (730)
17 PRK14706 glycogen branching en 48.3 2E+02 0.0044 27.2 10.1 75 78-162 547-624 (639)
18 PF08533 Glyco_hydro_42C: Beta 47.6 17 0.00037 22.8 2.1 17 78-94 13-29 (58)
19 PF11941 DUF3459: Domain of un 40.6 1.1E+02 0.0023 20.3 6.9 16 78-93 44-59 (89)
20 PRK12313 glycogen branching en 39.9 1.5E+02 0.0032 27.8 7.8 21 141-161 609-629 (633)
21 TIGR02455 TreS_stutzeri trehal 39.3 3.5E+02 0.0075 26.0 10.0 63 78-163 623-685 (688)
22 PRK05402 glycogen branching en 38.7 1.6E+02 0.0035 28.2 8.0 74 78-160 648-724 (726)
23 PRK14705 glycogen branching en 36.4 1.5E+02 0.0033 30.3 7.7 74 78-160 1147-1223(1224)
24 PF06030 DUF916: Bacterial pro 32.3 2E+02 0.0043 20.9 7.2 22 77-98 30-51 (121)
25 cd06494 p23_NUDCD2_like p23-li 32.0 1.6E+02 0.0036 20.4 5.3 27 68-97 10-37 (93)
26 PF01229 Glyco_hydro_39: Glyco 31.8 3.3E+02 0.0071 24.6 8.5 18 144-161 468-485 (486)
27 PLN02447 1,4-alpha-glucan-bran 27.6 2.7E+02 0.0058 27.1 7.4 76 79-162 654-733 (758)
28 smart00632 Aamy_C Aamy_C domai 25.1 1.2E+02 0.0027 20.1 3.6 19 139-157 57-76 (81)
29 PF00207 A2M: Alpha-2-macroglo 24.4 1.3E+02 0.0029 20.3 3.7 20 77-96 73-92 (92)
30 COG2808 PaiB Transcriptional r 23.8 66 0.0014 26.0 2.3 27 13-39 62-94 (209)
31 TIGR01515 branching_enzym alph 23.8 2.7E+02 0.0058 26.1 6.6 19 140-158 595-613 (613)
32 KOG1263 Multicopper oxidases [ 22.1 76 0.0017 29.6 2.7 18 145-162 493-510 (563)
33 PLN02960 alpha-amylase 21.7 3.7E+02 0.008 26.7 7.2 21 140-160 872-892 (897)
34 KOG1667 Zn2+-binding protein M 21.7 3.3E+02 0.0071 23.1 6.0 39 130-169 271-312 (320)
35 KOG3848 Extracellular protein 21.6 57 0.0012 29.3 1.6 27 4-30 190-217 (516)
36 cd06469 p23_DYX1C1_like p23_li 21.5 2.3E+02 0.005 18.0 5.4 24 128-151 45-68 (78)
37 cd06463 p23_like Proteins cont 20.9 2.3E+02 0.005 17.8 6.5 21 130-150 52-72 (84)
38 PF11182 AlgF: Alginate O-acet 20.5 4.4E+02 0.0094 20.8 7.5 68 78-162 29-96 (181)
39 PHA03131 dUTPase; Provisional 20.4 2.6E+02 0.0056 23.7 5.3 14 77-90 84-97 (286)
40 PF10438 Cyc-maltodext_C: Cycl 20.1 1.3E+02 0.0028 20.4 2.8 14 146-159 65-78 (78)
No 1
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=100.00 E-value=4.7e-38 Score=246.82 Aligned_cols=136 Identities=38% Similarity=0.655 Sum_probs=117.4
Q ss_pred CceecceeecCCCCCCCccEEEEcCCceecCcchhhhhhhcccCCCeEEEEEEecCCCCceEEEEEEeccCCCceeeEEE
Q 030320 1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 80 (179)
Q Consensus 1 ma~yAPl~~~~~~~qW~p~lI~~d~~~~~~tp~Yyv~~lfs~~~g~~~l~~~~~~~~~~~v~~sA~~~~~t~~~~~~l~v 80 (179)
||||||||++.+..||+|+||+||++++|+||+||||+||+.|.|+.+| ++|+++|++|+++++ ++|
T Consensus 42 ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l---------~~l~~~As~d~~~~~----l~v 108 (177)
T PF06964_consen 42 MACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL---------PPLDVSASRDEDGGE----LYV 108 (177)
T ss_dssp EEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE---------ESEEEEEEEETTTTE----EEE
T ss_pred EEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe---------ccEEEEEEEECCCCE----EEE
Confidence 8999999999999999999999999999999999999999999999999 579999999888764 999
Q ss_pred EEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCce
Q 030320 81 KVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYS 153 (179)
Q Consensus 81 k~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S 153 (179)
|+||+++++++++|+|+|+... ..+++++|+|+++.++|++++|++|.|++..+...++.|+++|||+|
T Consensus 109 ~vVN~~~~~~~v~l~l~g~~~~----~~a~~~~Ltg~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 109 KVVNRSSEPQTVTLNLQGFSPA----ATATVTTLTGDDPDAENTFENPENVVPVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp EEEE-SSSBEEEEEEETTSTS-----EEEEEEEEETSSTT-B-CSSSTTSSEEEEEEEEEETTEEEEEE-SSE
T ss_pred EEEECCCCCEEEEEEEcCCCCC----ceEEEEEEECCCcccccCCCCCCEEEEEEeeEEecCCEEEEEeCCCC
Confidence 9999998899999999998764 68999999999999999999999999999888888999999999998
No 2
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=100.00 E-value=5.5e-33 Score=220.48 Aligned_cols=139 Identities=37% Similarity=0.544 Sum_probs=125.1
Q ss_pred CceecceeecCCCCCCCccEEEEcCCceecCcchhhhhhhcccCCCeEEEEEEecCCC-------CceEEEEEEeccCCC
Q 030320 1 MASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS-------SSIVASAISWEDSEN 73 (179)
Q Consensus 1 ma~yAPl~~~~~~~qW~p~lI~~d~~~~~~tp~Yyv~~lfs~~~g~~~l~~~~~~~~~-------~~v~~sA~~~~~t~~ 73 (179)
|||||||+++.+ |+||+||++++|+||+||||+||+.|+|+++|++.+.++.+ +.|+++|++|++++
T Consensus 42 ma~~A~lvn~~~-----p~~i~~~~~~~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~- 115 (189)
T smart00813 42 MASYAQLVNVIN-----PDMLTFNGGQAWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGG- 115 (189)
T ss_pred eehhhhhhcccc-----ceEEEeCCCCEEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCC-
Confidence 899999999764 89999999999999999999999999999999999988754 56999999987665
Q ss_pred ceeeEEEEEEeCCCC-cEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEE-EecCCeeEEEEcC
Q 030320 74 AKSFLRIKVVNLRSN-SVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLL-ENAAKDMDVVISP 151 (179)
Q Consensus 74 ~~~~l~vk~VN~~~~-~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~-~~~~~~~~~~lp~ 151 (179)
+++||+||++.+ +++++|+|+|+.. ..+++++|+++++.+.||+++|++|+|++... ...++.|+++|||
T Consensus 116 ---~~~v~vvN~~~~~~~~~~l~l~g~~~-----~~~~~~~l~~~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~~lp~ 187 (189)
T smart00813 116 ---SLTVKVVNRSPEEAVTVTISLRGLKA-----KSAEGTVLTSPDLNAANTFEDPNKVVPVTSTLAAVEGGTLTVTLPP 187 (189)
T ss_pred ---EEEEEEEeCCCCcCEEEEEEecCCcc-----ceEEEEEEeCCCCccccCCCCCCeeeccccCCceeeCCEEEEEeCC
Confidence 499999999855 7999999999874 46789999999999999999999999999774 5677899999999
Q ss_pred ce
Q 030320 152 YS 153 (179)
Q Consensus 152 ~S 153 (179)
+|
T Consensus 188 ~S 189 (189)
T smart00813 188 HS 189 (189)
T ss_pred CC
Confidence 97
No 3
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=5.7e-25 Score=190.70 Aligned_cols=135 Identities=23% Similarity=0.299 Sum_probs=118.4
Q ss_pred EEEEcCCceecCcchhhhhhhcccCCCeEEEEEEecCCC--------CceEEEEEEeccCCCceeeEEEEEEeCCCC-cE
Q 030320 20 AIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS--------SSIVASAISWEDSENAKSFLRIKVVNLRSN-SV 90 (179)
Q Consensus 20 lI~~d~~~~~~tp~Yyv~~lfs~~~g~~~l~~~~~~~~~--------~~v~~sA~~~~~t~~~~~~l~vk~VN~~~~-~~ 90 (179)
++...++++|+||+||||+|++.|.+++.|.+.+++++| +.|++||++|+++++ |+||+||++.+ +.
T Consensus 357 i~~ekgg~~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~----l~i~vvN~~~~d~~ 432 (501)
T COG3534 357 IMTEKGGPAWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGE----LTIFVVNRALEDAL 432 (501)
T ss_pred eeecCCCcceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCe----EEEEEEeccccccc
Confidence 344444556679999999999999999999999998874 259999999998774 99999999866 49
Q ss_pred EEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeE-EEecCCeeEEEEcCceEEEEEEecc
Q 030320 91 NLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTL-LENAAKDMDVVISPYSFTSFDLLRE 162 (179)
Q Consensus 91 ~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~-~~~~~~~~~~~lp~~S~~vi~l~~~ 162 (179)
+++|+|+|++.. ..+++++|+|++++|.|+|++|++|+|++.. ..++++.|+++|||+||.||||++.
T Consensus 433 ~~~i~l~G~~~a----~~~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S~~virl~~~ 501 (501)
T COG3534 433 KLNISLNGLKKA----KSAEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLSVSVIRLKLK 501 (501)
T ss_pred cceEEecccccc----ceeeEEEEecCccccccCCCCCCceecccCCCccccCCceeEecCCceEEEEEEecC
Confidence 999999999863 6899999999999999999999999999877 4778889999999999999999863
No 4
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.23 E-value=0.06 Score=48.95 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=54.9
Q ss_pred ecCCCCCCCcc------EEEEcCCceecCcchhhhhhhccc--CCCeEEEEEEecCCCCceEEEEEEeccCCCceeeEEE
Q 030320 9 VNANDRWWTPD------AIVFNSAQLYGTPSYWVQQFFRES--SGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRI 80 (179)
Q Consensus 9 ~~~~~~qW~p~------lI~~d~~~~~~tp~Yyv~~lfs~~--~g~~~l~~~~~~~~~~~v~~sA~~~~~t~~~~~~l~v 80 (179)
-..+|+.|..+ ++..+.+.++++|.||.+..|+.. .|.+.+.+..... -..|..+|-.+.++ .++|
T Consensus 382 D~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~-~~~l~~vAF~nPDG-----s~vv 455 (496)
T PF02055_consen 382 DENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSS-DSGLEAVAFLNPDG-----SIVV 455 (496)
T ss_dssp ETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSS-TTTEEEEEEEETTS-----EEEE
T ss_pred CCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCC-CCceeEEEEECCCC-----CEEE
Confidence 33456665432 333455889999999999999996 5888888866532 13688888776653 2677
Q ss_pred EEEeCCCCcEEEEEEEccC
Q 030320 81 KVVNLRSNSVNLKVSVDGL 99 (179)
Q Consensus 81 k~VN~~~~~~~v~i~l~g~ 99 (179)
-+.|++++++.++|.+++.
T Consensus 456 Vv~N~~~~~~~~~v~v~~~ 474 (496)
T PF02055_consen 456 VVLNRGDSDQNFSVTVKDG 474 (496)
T ss_dssp EEEE-SSS-EEEEEEEECT
T ss_pred EEEcCCCCccceEEEEecC
Confidence 7899998888878887653
No 5
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=92.75 E-value=1.1 Score=30.90 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.9
Q ss_pred cCCeeEEEEcCceEEEEEEe
Q 030320 141 AAKDMDVVISPYSFTSFDLL 160 (179)
Q Consensus 141 ~~~~~~~~lp~~S~~vi~l~ 160 (179)
.+++++++|||+|..|++++
T Consensus 75 ~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 75 SNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp TTSEEEEEESTTEEEEEEEE
T ss_pred eCCEEEEEECCCEEEEEEEc
Confidence 46789999999999999986
No 6
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=86.23 E-value=10 Score=27.15 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEE
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~v 156 (179)
.-+|-.+|-.... .++|.|..+... ..-++.++. +..++.. ++|..+..++..+. .++.+++.|.|+.=.+
T Consensus 28 ~Wyvg~in~~~~r-~i~l~L~FL~~g----~~y~a~i~~-D~~~a~~--~~~~~~~~~~~~v~-~~~~l~i~l~~~GG~v 98 (103)
T PF14509_consen 28 DWYVGGINGEDAR-TITLPLSFLDKG----KKYTATIYT-DGPDADY--TNPEAYKIETRKVT-SGDKLTITLAPGGGFV 98 (103)
T ss_dssp EEEEEEEE-TT-E-EEEEEGCCS-TT------EEEEEEE-E-TTTCT--TCTT-EEEEEEEE--TT-EEEEEE-TT-EEE
T ss_pred CEEEEEeeCCCce-EEEEECcccCCC----CcEEEEEEE-eCCcccc--cCCcceEEEEEEEC-CCCEEEEEEeCCCcEE
Confidence 4899999976444 489999877642 123445554 4443333 67777776665553 4678999999998888
Q ss_pred EEEe
Q 030320 157 FDLL 160 (179)
Q Consensus 157 i~l~ 160 (179)
++|.
T Consensus 99 i~~~ 102 (103)
T PF14509_consen 99 IRIT 102 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 7
>PLN02808 alpha-galactosidase
Probab=77.41 E-value=13 Score=33.00 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEE
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~v 156 (179)
...|-+.|++++++++++++..++... ....++. |+-..-+.. ...+.+++++|||.+.+
T Consensus 321 ~~aVal~N~~~~~~~~~~~~~~lgl~~--~~~~~vr-----DlWs~~~~g-------------~~~~~~~~~v~pHg~~~ 380 (386)
T PLN02808 321 RVAVVLWNRGSSRATITARWSDIGLNS--SAVVNAR-----DLWAHSTQS-------------SVKGQLSALVESHACKM 380 (386)
T ss_pred CEEEEEEECCCCCEEEEEEHHHhCCCC--CCceEEE-----ECCCCCccC-------------cccceEEEEECCceEEE
Confidence 378999999999999999987554320 0111222 222211111 01245889999999999
Q ss_pred EEEec
Q 030320 157 FDLLR 161 (179)
Q Consensus 157 i~l~~ 161 (179)
+||..
T Consensus 381 ~rlt~ 385 (386)
T PLN02808 381 YVLTP 385 (386)
T ss_pred EEEeC
Confidence 99864
No 8
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=76.65 E-value=27 Score=30.89 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred hhhhhhcccCCCeEEEEEEecCCCCceEEEEEEeccCCCceeeEEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEE
Q 030320 35 WVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQL 114 (179)
Q Consensus 35 yv~~lfs~~~g~~~l~~~~~~~~~~~v~~sA~~~~~t~~~~~~l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L 114 (179)
|++..|+...+.-++.+.-...+++-+++|+=. +.+ -++|-..|.+..+.-=++.++..+. ..+ ...+
T Consensus 327 y~ma~fskf~q~gy~rldat~sp~~nvyvsayv----g~n--kvvivaink~~~~vnq~f~fqNpdg-----snV-s~w~ 394 (433)
T COG5520 327 YCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYV----GPN--KVVIVAINKGTYPVNQSFNFQNPDG-----SNV-SSWV 394 (433)
T ss_pred eeEeeeeeeccCCceEEecccCccceEEEEEEe----cCC--cEEEEeecccccccceeEEEECCCC-----CeE-EEEE
Confidence 344444444443333333332345567777632 221 2677778887666444555654333 222 2444
Q ss_pred ecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEEEEEeccc
Q 030320 115 TSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRES 163 (179)
Q Consensus 115 ~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~vi~l~~~~ 163 (179)
+.+.. .+.+. +.+...+++|..+|||.|++.+.-..+|
T Consensus 395 ns~t~----------n~~~~-sni~~a~~rf~asLPaqsvtTfv~~~ns 432 (433)
T COG5520 395 NSSTL----------NMAKT-SNILAAGGRFNASLPAQSVTTFVWDLNS 432 (433)
T ss_pred eccch----------hhccc-cceeccCceeeeecCcccceeEEEeccC
Confidence 43321 12222 3455678999999999999988776654
No 9
>PLN02229 alpha-galactosidase
Probab=70.39 E-value=29 Score=31.23 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEE
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~v 156 (179)
..+|-+.|++++++++++.+...+... ....++. |+-..-+... ...+.+++++|||.+.+
T Consensus 354 ~~aValfN~~~~~~~v~v~~~~lGl~~--~~~~~Vr-----DLW~~~dlg~------------~~~~~~~~~v~~Hg~~l 414 (427)
T PLN02229 354 RLVVALWNRCSEPATITASWDVIGLES--SISVSVR-----DLWKHKDLSE------------NVVGSFGAQVDAHDCHM 414 (427)
T ss_pred CEEEEEEeCCCCCEEEEEEHHHcCCCC--CCceEEE-----ECCCCCccCc------------cccceEEEEECCCeEEE
Confidence 378999999999999999987554320 0111222 2222111100 01457899999999999
Q ss_pred EEEecc
Q 030320 157 FDLLRE 162 (179)
Q Consensus 157 i~l~~~ 162 (179)
+||...
T Consensus 415 ~rl~~~ 420 (427)
T PLN02229 415 YIFTPQ 420 (427)
T ss_pred EEEecc
Confidence 999764
No 10
>PLN02692 alpha-galactosidase
Probab=69.04 E-value=28 Score=31.14 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=41.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEE
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~v 156 (179)
...|-+.|+++.+.++++.+..++... ....++.=|- +.-+... ...+.+++++|||.+.+
T Consensus 345 ~~aVal~N~~~~~~~i~~~~~~lgl~~--~~~~~vrDLW-----~~~~~g~------------~~~~~~~~~v~~Hg~~l 405 (412)
T PLN02692 345 RVALLLLNRGPWRNSITANWDDIGIPA--NSIVEARDLW-----EHKTLKQ------------HFVGNLTATVDSHACKM 405 (412)
T ss_pred CEEEEEEECCCCCEEEEEeHHHhCCCC--CCceEEEECC-----CCCccCc------------cccceEEEEECCceEEE
Confidence 378999999998888898876444320 0112222222 2111110 02456899999999999
Q ss_pred EEEecc
Q 030320 157 FDLLRE 162 (179)
Q Consensus 157 i~l~~~ 162 (179)
+|+...
T Consensus 406 ~rl~~~ 411 (412)
T PLN02692 406 YILKPI 411 (412)
T ss_pred EEEecC
Confidence 998653
No 11
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=63.99 E-value=17 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=37.9
Q ss_pred eecCCCCCCCcc-----EEEEc-CCceecCcchhhhhhhcccC--CCeEEEEEEecCCCCceEEEEEEec
Q 030320 8 FVNANDRWWTPD-----AIVFN-SAQLYGTPSYWVQQFFRESS--GATLLNATLLTNSSSSIVASAISWE 69 (179)
Q Consensus 8 ~~~~~~~qW~p~-----lI~~d-~~~~~~tp~Yyv~~lfs~~~--g~~~l~~~~~~~~~~~v~~sA~~~~ 69 (179)
|.-.+|+.|-.+ +|.+- ..+.+++|-||+...|+... |.+.+...++. ...|.++|..++
T Consensus 406 Ld~~GGP~wv~nfvDspiIv~~t~~~fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~--~~~ve~~aflnp 473 (518)
T KOG2566|consen 406 LDAQGGPNWVSNFVDSPIIVNPTAQEFYKQPMFYALGHFSKFLPPGSVRVGHSINQ--NLDVEATAFLNP 473 (518)
T ss_pred ecCcCCchhHhccCCCceEecHHHHHHhhccHHHHHHHHhhcCCCCceEeeeeecc--ccccceeEEEcC
Confidence 334467777532 44443 36789999999999999954 67666665553 123455555433
No 12
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.32 E-value=25 Score=32.22 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=34.4
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEEE
Q 030320 78 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~vi 157 (179)
.+|-++|.+.+++.++|.+.... +.. ..-|.+++. +. ...++.+.++|||+|+.+|
T Consensus 481 ~vlVv~N~s~~~~~v~l~~~~~~------~~~-~~dl~~~~~-----------~~------~~~~~~~~~~l~p~~~~~~ 536 (539)
T TIGR02456 481 RVLCVFNFSRNPQAVELDLSEFA------GRV-PVELIGGAP-----------FP------PVGGDGYLLTLGPHGFYWF 536 (539)
T ss_pred EEEEEEeCCCCCEEeeccccccc------cCc-ceecccCCc-----------cc------cccCCcceEEECCceEEEE
Confidence 56778899988888777664321 111 122222211 10 1123457899999999999
Q ss_pred EE
Q 030320 158 DL 159 (179)
Q Consensus 158 ~l 159 (179)
+|
T Consensus 537 ~~ 538 (539)
T TIGR02456 537 RL 538 (539)
T ss_pred Ee
Confidence 85
No 13
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=53.35 E-value=58 Score=21.27 Aligned_cols=23 Identities=4% Similarity=0.216 Sum_probs=14.6
Q ss_pred ceEeeeeeEEEecCCeeEEEEcC
Q 030320 129 NKVVPSLTLLENAAKDMDVVISP 151 (179)
Q Consensus 129 ~~V~P~~~~~~~~~~~~~~~lp~ 151 (179)
..|.|.++...+.++.+.+.|+.
T Consensus 52 ~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 52 GPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred cccCchhcEEEEeCeEEEEEEEc
Confidence 45667766666666666666653
No 14
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=52.02 E-value=27 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=18.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCC
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDGLG 100 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g~~ 100 (179)
...+++.|.+.+++.++|.+.|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~ 57 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP 57 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S
T ss_pred EEEEEEEECCCCCEEEEEEEecCC
Confidence 478999999999999999998843
No 15
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=51.99 E-value=72 Score=21.59 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=25.1
Q ss_pred eEEEEEEeccCCCceeeEEEEEEeCCCCcEEEEEEEc
Q 030320 61 IVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVD 97 (179)
Q Consensus 61 v~~sA~~~~~t~~~~~~l~vk~VN~~~~~~~v~i~l~ 97 (179)
+.+.+.++..++ .|.|.+.|.+...+.++|.-.
T Consensus 9 ~~v~~~~~~~~g----~l~l~l~N~g~~~~~~~v~~~ 41 (89)
T PF05506_consen 9 PEVTARYDPATG----NLRLTLSNPGSAAVTFTVYDN 41 (89)
T ss_pred CEEEEEEECCCC----EEEEEEEeCCCCcEEEEEEeC
Confidence 455666666655 399999999888888888864
No 16
>PRK12568 glycogen branching enzyme; Provisional
Probab=49.85 E-value=85 Score=30.23 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=40.5
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCccccCceEE-EEEecCCCC-CCCCCCCCceEeeeeeEEEecCCeeEEEEcCceE
Q 030320 78 LRIKVVNLRSNS-VNLKVSVDGLGPNSIKLSGSTK-TQLTSSNLK-DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 78 l~vk~VN~~~~~-~~v~i~l~g~~~~~~~~~~~~~-~~L~~~d~~-a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~ 154 (179)
-+|.|+|.++.+ ...+|.++. .+.. .+|.+++.. .-.-..+...+..+.....+....++++|||+|+
T Consensus 653 ~v~vV~Nft~~~~~~Y~ig~p~---------~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~ 723 (730)
T PRK12568 653 PLLAVSNLTPQPHHDYRVGVPR---------AGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLAT 723 (730)
T ss_pred eEEEEECCCCCCccCeEECCCC---------CCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEE
Confidence 467789999876 445554432 1222 344433221 1111233334433333334445679999999999
Q ss_pred EEEEEe
Q 030320 155 TSFDLL 160 (179)
Q Consensus 155 ~vi~l~ 160 (179)
.+++..
T Consensus 724 ~~~~~~ 729 (730)
T PRK12568 724 IYLQAE 729 (730)
T ss_pred EEEEEC
Confidence 999864
No 17
>PRK14706 glycogen branching enzyme; Provisional
Probab=48.33 E-value=2e+02 Score=27.19 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=40.5
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCccccCceEE-EEEecCCCCCCCC-CCCCceEeeeeeEEEecCCeeEEEEcCceE
Q 030320 78 LRIKVVNLRSNS-VNLKVSVDGLGPNSIKLSGSTK-TQLTSSNLKDENS-FTEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 78 l~vk~VN~~~~~-~~v~i~l~g~~~~~~~~~~~~~-~~L~~~d~~a~Nt-~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~ 154 (179)
-+|.|+|.++.. ...+|.++. .++. .+|.+++..-.-+ ..++ .+..+..........+.++|||+|.
T Consensus 547 ~vlvV~Nfs~~~~~~y~ig~p~---------~g~~~~i~nsd~~~~gG~g~~n~-~~~~~~~~~~g~~~si~i~lp~~~~ 616 (639)
T PRK14706 547 WSLAVANLTPVYREQYRIGVPQ---------GGEYRVLLSTDDGEYGGFGTQQP-DLMASQEGWHGQPHSLSLNLPPSSV 616 (639)
T ss_pred eEEEEEeCCCCCcCCeEECCCC---------CCeEEEEEcCCccccCCCCCCCC-ceeccccccCCCccEEEEEeCCcEE
Confidence 478889999754 456665542 1222 4444433211111 1121 1222221223345589999999999
Q ss_pred EEEEEecc
Q 030320 155 TSFDLLRE 162 (179)
Q Consensus 155 ~vi~l~~~ 162 (179)
.|++....
T Consensus 617 ~~~~~~~~ 624 (639)
T PRK14706 617 LILEFVGD 624 (639)
T ss_pred EEEEECCC
Confidence 99988644
No 18
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=47.57 E-value=17 Score=22.77 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=10.8
Q ss_pred EEEEEEeCCCCcEEEEE
Q 030320 78 LRIKVVNLRSNSVNLKV 94 (179)
Q Consensus 78 l~vk~VN~~~~~~~v~i 94 (179)
-++|+.|.+++++++++
T Consensus 13 ~y~F~~N~s~~~~~v~l 29 (58)
T PF08533_consen 13 RYLFLLNFSDEPQTVTL 29 (58)
T ss_dssp TEEEEEE-SSS-EE---
T ss_pred EEEEEEECCCCCEEEEc
Confidence 58999999999988776
No 19
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=40.59 E-value=1.1e+02 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.4
Q ss_pred EEEEEEeCCCCcEEEE
Q 030320 78 LRIKVVNLRSNSVNLK 93 (179)
Q Consensus 78 l~vk~VN~~~~~~~v~ 93 (179)
-.+-++|.+++++++.
T Consensus 44 ~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 44 RLLVAFNLSDEPVTVP 59 (89)
T ss_dssp EEEEEEE-SSS-EEEE
T ss_pred eEEEEEecCCCcEEcc
Confidence 5777899999888777
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=39.88 E-value=1.5e+02 Score=27.82 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCeeEEEEcCceEEEEEEec
Q 030320 141 AAKDMDVVISPYSFTSFDLLR 161 (179)
Q Consensus 141 ~~~~~~~~lp~~S~~vi~l~~ 161 (179)
....+.+.|||+|..|++...
T Consensus 609 ~~~~~~i~ip~~s~~v~~~~~ 629 (633)
T PRK12313 609 RPQSLTLTLPPLGALVLKPKR 629 (633)
T ss_pred CCCEEEEEeCCCEEEEEEEcc
Confidence 445789999999999988754
No 21
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=39.34 E-value=3.5e+02 Score=25.99 Aligned_cols=63 Identities=10% Similarity=0.352 Sum_probs=43.5
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEEE
Q 030320 78 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~vi 157 (179)
+.|.+.|.+.+++.++|++.++.. . ...-|.++.. +... .+++.+.++|+||....+
T Consensus 623 ~~L~v~Nfs~~~~~~~l~l~~~~~-----~--~~~dl~~~~~-----~~~~-----------~~~~~~~i~L~~y~~~wl 679 (688)
T TIGR02455 623 IQITALNFGADAIAEEICLPGFAP-----G--PVVDIIHESV-----EGDL-----------TDDCELMINLDPYEALAL 679 (688)
T ss_pred eEEEeeccCCCCeeeEEeccccCC-----C--CceeccCCCc-----cCCc-----------CCCceeEEEecCcceEEE
Confidence 789999999999999999887643 1 2233333221 1110 146789999999999999
Q ss_pred EEeccc
Q 030320 158 DLLRES 163 (179)
Q Consensus 158 ~l~~~~ 163 (179)
+++..+
T Consensus 680 ~~~~~~ 685 (688)
T TIGR02455 680 RIVNAA 685 (688)
T ss_pred Eecccc
Confidence 887653
No 22
>PRK05402 glycogen branching enzyme; Provisional
Probab=38.70 E-value=1.6e+02 Score=28.17 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCccccCceEEEEEecCCCC--CCCCCCCCceEeeeeeEEEecCCeeEEEEcCceE
Q 030320 78 LRIKVVNLRSNS-VNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK--DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 78 l~vk~VN~~~~~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~--a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~ 154 (179)
-+|.++|.++++ ...+|.+.. . +.- ..+|.+++.. -.+ ..+...+..++..-.+....+.++|||+|.
T Consensus 648 ~vlvv~N~~~~~~~~y~i~~p~---~----g~~-~~ilnsd~~~~gg~~-~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~ 718 (726)
T PRK05402 648 PLLVVCNFTPVPRHDYRLGVPQ---A----GRW-REVLNTDAEHYGGSN-VGNGGGVHAEEVPWHGRPHSLSLTLPPLAT 718 (726)
T ss_pred eEEEEEeCCCCcccceEECCCC---C----CeE-EEEEcCcchhhCCCC-CCCCCceeccccccCCCCCEEEEEeCCCEE
Confidence 467789998765 345655432 1 111 2444444322 111 112222221111123345678999999999
Q ss_pred EEEEEe
Q 030320 155 TSFDLL 160 (179)
Q Consensus 155 ~vi~l~ 160 (179)
.|++..
T Consensus 719 ~v~~~~ 724 (726)
T PRK05402 719 LILKPE 724 (726)
T ss_pred EEEEEc
Confidence 998763
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=36.35 E-value=1.5e+02 Score=30.31 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCcEE-EEEEEccCCCCccccCceEEEEEecCCCC--CCCCCCCCceEeeeeeEEEecCCeeEEEEcCceE
Q 030320 78 LRIKVVNLRSNSVN-LKVSVDGLGPNSIKLSGSTKTQLTSSNLK--DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 78 l~vk~VN~~~~~~~-v~i~l~g~~~~~~~~~~~~~~~L~~~d~~--a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~ 154 (179)
-+|.|+|.++.+.. .+|-+... + .-..+|.+++.. -.| ..+...+..++.........+.++|||+|.
T Consensus 1147 ~vlvv~Nftp~~~~~y~igvp~~-------G-~y~eilnsd~~~ygGsg-~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~ 1217 (1224)
T PRK14705 1147 PLVCAINFSGGPHKGYTLGVPAA-------G-AWTEVLNTDHETYGGSG-VLNPGSLKATTEGQDGQPATLTVTLPPLGA 1217 (1224)
T ss_pred EEEEEEcCCCCCccCceECCCCC-------C-eEEEEEeCchhhcCCCC-cCCCCceeecccccCCCCceEEEEecCCEE
Confidence 36778999987644 55544321 1 112444443321 111 223333433332233445679999999999
Q ss_pred EEEEEe
Q 030320 155 TSFDLL 160 (179)
Q Consensus 155 ~vi~l~ 160 (179)
.+++..
T Consensus 1218 ~~~~~~ 1223 (1224)
T PRK14705 1218 SFFAPA 1223 (1224)
T ss_pred EEEEEC
Confidence 988753
No 24
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=32.30 E-value=2e+02 Score=20.95 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.3
Q ss_pred eEEEEEEeCCCCcEEEEEEEcc
Q 030320 77 FLRIKVVNLRSNSVNLKVSVDG 98 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l~g 98 (179)
.+.|.+-|.++++.++++.+..
T Consensus 30 ~l~v~i~N~s~~~~tv~v~~~~ 51 (121)
T PF06030_consen 30 TLEVRITNNSDKEITVKVSANT 51 (121)
T ss_pred EEEEEEEeCCCCCEEEEEEEee
Confidence 5999999999999999998864
No 25
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=31.99 E-value=1.6e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=15.2
Q ss_pred eccCCCceeeEEEEE-EeCCCCcEEEEEEEc
Q 030320 68 WEDSENAKSFLRIKV-VNLRSNSVNLKVSVD 97 (179)
Q Consensus 68 ~~~t~~~~~~l~vk~-VN~~~~~~~v~i~l~ 97 (179)
|.+|.+ ++.|.+ +-.+-...++.|.+.
T Consensus 10 W~QT~~---eV~v~i~lp~~~~~kdv~V~i~ 37 (93)
T cd06494 10 WYQTMD---EVFIEVNVPPGTRAKDVKCKLG 37 (93)
T ss_pred EEeEcC---EEEEEEECCCCCceeeEEEEEE
Confidence 344554 477776 555544556666664
No 26
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=31.76 E-value=3.3e+02 Score=24.56 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.5
Q ss_pred eeEEEEcCceEEEEEEec
Q 030320 144 DMDVVISPYSFTSFDLLR 161 (179)
Q Consensus 144 ~~~~~lp~~S~~vi~l~~ 161 (179)
++.++||++|+..|+|+.
T Consensus 468 ~l~~~L~~~~V~li~I~~ 485 (486)
T PF01229_consen 468 TLKLELPPPSVVLIHICA 485 (486)
T ss_dssp EEEEEE-TTEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEc
Confidence 467899999999999964
No 27
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=27.57 E-value=2.7e+02 Score=27.07 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=39.8
Q ss_pred EEEEEeCCCC-c-EEEEEEEccCCCCccccCceEEEEEecCCCC--CCCCCCCCceEeeeeeEEEecCCeeEEEEcCceE
Q 030320 79 RIKVVNLRSN-S-VNLKVSVDGLGPNSIKLSGSTKTQLTSSNLK--DENSFTEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 79 ~vk~VN~~~~-~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~--a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~ 154 (179)
.|+|.|.++. . ...+|-++.. + .-..+|.+++.. -.+..++.......+.........+.+.|||.|.
T Consensus 654 ll~V~NF~p~~s~~~Y~igvp~~-------G-~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~ 725 (758)
T PLN02447 654 LVFVFNFHPTNSYSDYRVGCDKP-------G-KYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTA 725 (758)
T ss_pred eEEEEeCCCCCCCCCcEECCCCC-------C-eEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceE
Confidence 5788999974 3 5555544311 1 123455444321 1111222111222222223445689999999999
Q ss_pred EEEEEecc
Q 030320 155 TSFDLLRE 162 (179)
Q Consensus 155 ~vi~l~~~ 162 (179)
.|++....
T Consensus 726 ~vl~~~~~ 733 (758)
T PLN02447 726 VVYAPVDE 733 (758)
T ss_pred EEEEECCc
Confidence 99988544
No 28
>smart00632 Aamy_C Aamy_C domain.
Probab=25.11 E-value=1.2e+02 Score=20.06 Aligned_cols=19 Identities=0% Similarity=-0.136 Sum_probs=13.9
Q ss_pred Eec-CCeeEEEEcCceEEEE
Q 030320 139 ENA-AKDMDVVISPYSFTSF 157 (179)
Q Consensus 139 ~~~-~~~~~~~lp~~S~~vi 157 (179)
.+. ++.+++++||.|..+|
T Consensus 57 ~V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 57 TVGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred EECCCCEEEEEECCCCeEEE
Confidence 444 6789999999995333
No 29
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=24.37 E-value=1.3e+02 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=14.7
Q ss_pred eEEEEEEeCCCCcEEEEEEE
Q 030320 77 FLRIKVVNLRSNSVNLKVSV 96 (179)
Q Consensus 77 ~l~vk~VN~~~~~~~v~i~l 96 (179)
.+.+.+-|+.+++.+++|.|
T Consensus 73 ~i~v~v~N~~~~~~~v~V~l 92 (92)
T PF00207_consen 73 QIPVTVFNYTDKDQEVTVTL 92 (92)
T ss_dssp EEEEEEEE-SSS-EEEEEEE
T ss_pred EEEEEEEeCCCCCEEEEEEC
Confidence 47788999998888888875
No 30
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=23.83 E-value=66 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.607 Sum_probs=21.6
Q ss_pred CCCCC------ccEEEEcCCceecCcchhhhhh
Q 030320 13 DRWWT------PDAIVFNSAQLYGTPSYWVQQF 39 (179)
Q Consensus 13 ~~qW~------p~lI~~d~~~~~~tp~Yyv~~l 39 (179)
.+||+ +-|+.|.+.+.|-+|+||+.|-
T Consensus 62 Np~w~~~~~~~~vLvvFqgpdAYISP~WY~sK~ 94 (209)
T COG2808 62 NPQWRGLEDGQPVLVVFQGPDAYISPAWYPSKR 94 (209)
T ss_pred CCcccccCCCCeEEEEEeCCCcccCcccccccc
Confidence 46775 4578899999999999998763
No 31
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=23.75 E-value=2.7e+02 Score=26.08 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=15.1
Q ss_pred ecCCeeEEEEcCceEEEEE
Q 030320 140 NAAKDMDVVISPYSFTSFD 158 (179)
Q Consensus 140 ~~~~~~~~~lp~~S~~vi~ 158 (179)
+....+.++|||+|..|++
T Consensus 595 g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 595 GRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred CCCCEEEEEeCCcEEEEeC
Confidence 3456899999999998763
No 32
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.12 E-value=76 Score=29.58 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.7
Q ss_pred eEEEEcCceEEEEEEecc
Q 030320 145 MDVVISPYSFTSFDLLRE 162 (179)
Q Consensus 145 ~~~~lp~~S~~vi~l~~~ 162 (179)
=++.+||.||++||+..+
T Consensus 493 ~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 493 DTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred ceEEeCCCCEEEEEEEcC
Confidence 367999999999999765
No 33
>PLN02960 alpha-amylase
Probab=21.73 E-value=3.7e+02 Score=26.71 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.2
Q ss_pred ecCCeeEEEEcCceEEEEEEe
Q 030320 140 NAAKDMDVVISPYSFTSFDLL 160 (179)
Q Consensus 140 ~~~~~~~~~lp~~S~~vi~l~ 160 (179)
.....+.++|||+|..|+++.
T Consensus 872 g~~~si~i~LPp~sa~v~k~~ 892 (897)
T PLN02960 872 GLRNCLELTLPSRSAQVYKLA 892 (897)
T ss_pred CCCceEEEEeCCCEEEEEEEe
Confidence 345678999999999998863
No 34
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=21.67 E-value=3.3e+02 Score=23.07 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.8
Q ss_pred eEeeeeeEEEecCCeeEEEEc---CceEEEEEEecccccceec
Q 030320 130 KVVPSLTLLENAAKDMDVVIS---PYSFTSFDLLRESVAMKME 169 (179)
Q Consensus 130 ~V~P~~~~~~~~~~~~~~~lp---~~S~~vi~l~~~~~~~~~~ 169 (179)
.|.++++.+...+.++.++|+ |.||+-|++... ++-|.|
T Consensus 271 vvnve~s~v~m~~tkVEIsl~k~ep~sWa~Le~p~~-l~kK~e 312 (320)
T KOG1667|consen 271 VVNVEESSVVMGETKVEISLKKAEPGSWARLEFPPE-LAKKNE 312 (320)
T ss_pred eechhhceEEeecceEEEEEeccCCCCcccccCCHH-Hhhhhh
Confidence 455555555555667777766 899999998766 666654
No 35
>KOG3848 consensus Extracellular protein TEM7, contains PSI domain (tumor endothelial marker in humans) [Extracellular structures]
Probab=21.61 E-value=57 Score=29.34 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=19.3
Q ss_pred ecceeecCCC-CCCCccEEEEcCCceec
Q 030320 4 YAPLFVNAND-RWWTPDAIVFNSAQLYG 30 (179)
Q Consensus 4 yAPl~~~~~~-~qW~p~lI~~d~~~~~~ 30 (179)
.||||+|-+- --=+....+||++.+|.
T Consensus 190 IAPLMANFdts~snnS~V~y~DnGtafv 217 (516)
T KOG3848|consen 190 IAPLMANFDTSYSNNSTVVYFDNGTAFV 217 (516)
T ss_pred HhHHhhcCCccccCCceEEEecCCeEEE
Confidence 4899999763 33356788899987653
No 36
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=21.48 E-value=2.3e+02 Score=18.04 Aligned_cols=24 Identities=0% Similarity=-0.122 Sum_probs=16.2
Q ss_pred CceEeeeeeEEEecCCeeEEEEcC
Q 030320 128 PNKVVPSLTLLENAAKDMDVVISP 151 (179)
Q Consensus 128 P~~V~P~~~~~~~~~~~~~~~lp~ 151 (179)
|..|.|........++.+.++|+.
T Consensus 45 ~~~I~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 45 AAPIDDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred cccccccccEEEEeCCEEEEEEEe
Confidence 455677766666667777777764
No 37
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=20.91 E-value=2.3e+02 Score=17.79 Aligned_cols=21 Identities=5% Similarity=0.241 Sum_probs=11.1
Q ss_pred eEeeeeeEEEecCCeeEEEEc
Q 030320 130 KVVPSLTLLENAAKDMDVVIS 150 (179)
Q Consensus 130 ~V~P~~~~~~~~~~~~~~~lp 150 (179)
.|.|........++.+.+.|+
T Consensus 52 ~I~~~~s~~~~~~~~l~i~L~ 72 (84)
T cd06463 52 PIDPEESKWTVEDRKIEITLK 72 (84)
T ss_pred ccchhhcEEEEeCCEEEEEEE
Confidence 344544444555555655554
No 38
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=20.51 E-value=4.4e+02 Score=20.85 Aligned_cols=68 Identities=25% Similarity=0.239 Sum_probs=40.7
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCccccCceEEEEEecCCCCCCCCCCCCceEeeeeeEEEecCCeeEEEEcCceEEEE
Q 030320 78 LRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vk~VN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~P~~~~~~~~~~~~~~~lp~~S~~vi 157 (179)
-.|-++|.+.+++.+++. |.+ ....|..+.+.+. ..+.+-...+.+.+..+.+++.|.++.-+
T Consensus 29 AFVRvvN~~~~~~~v~~~--g~~---------~~~~~~~~~~~~~------~~~~~G~~~~~~ggk~~~~~v~~~~f~Tv 91 (181)
T PF11182_consen 29 AFVRVVNASAAPVSVTVS--GSK---------AFQQLAPDQASSY------FFVPPGGYTLQVGGKQAEVDVAPGEFYTV 91 (181)
T ss_pred eEEEEEcCCCCcEEEEEe--cCC---------cccccCCCCccce------eecCCCceeEeecCcccceEecCCceEEE
Confidence 688899999988777653 321 1233333222111 12222233356667778888899998888
Q ss_pred EEecc
Q 030320 158 DLLRE 162 (179)
Q Consensus 158 ~l~~~ 162 (179)
.+...
T Consensus 92 V~~~~ 96 (181)
T PF11182_consen 92 VLRPG 96 (181)
T ss_pred EEcCC
Confidence 87666
No 39
>PHA03131 dUTPase; Provisional
Probab=20.40 E-value=2.6e+02 Score=23.72 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=10.9
Q ss_pred eEEEEEEeCCCCcE
Q 030320 77 FLRIKVVNLRSNSV 90 (179)
Q Consensus 77 ~l~vk~VN~~~~~~ 90 (179)
++.|.+.|.+.++.
T Consensus 84 EI~V~l~N~~~~~~ 97 (286)
T PHA03131 84 ELKLILLNKTKYNV 97 (286)
T ss_pred ceEEEEEeCCCCCE
Confidence 58999999986543
No 40
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.07 E-value=1.3e+02 Score=20.38 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.4
Q ss_pred EEEEcCceEEEEEE
Q 030320 146 DVVISPYSFTSFDL 159 (179)
Q Consensus 146 ~~~lp~~S~~vi~l 159 (179)
+++|||.|..||+|
T Consensus 65 ~l~l~~~~~~ILel 78 (78)
T PF10438_consen 65 NLTLPPKSVLILEL 78 (78)
T ss_dssp EEEE-TTEEEEEEE
T ss_pred cEEECCCceEEEEC
Confidence 67999999999986
Done!