BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030321
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
 pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
          Length = 1232

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 66  SPIVSADEASKALEELLPKASAIYPGMKNWSFTGARA 102
           SPIV ADE   +L  L  K +  Y  MK++   G R+
Sbjct: 648 SPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRS 684


>pdb|2HNL|A Chain A, Structure Of The Prostaglandin D Synthase From The
           Parasitic Nematode Onchocerca Volvulus
 pdb|2HNL|B Chain B, Structure Of The Prostaglandin D Synthase From The
           Parasitic Nematode Onchocerca Volvulus
          Length = 225

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 100 ARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACK 133
            R   + L P TP G  P+L    N++G +HA +
Sbjct: 59  TRDEWKYLKPRTPFGHVPMLNVSGNVLGESHAIE 92


>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
           Essential Gene Of Salmonella Typhimurium
 pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
           Essential Gene Of Salmonella Typhimurium
          Length = 353

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 66  SPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNL 125
            P     E  KAL+ L+    A+Y G+ N+    AR  +  L  +   G+P L+      
Sbjct: 162 DPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDILEDL---GTPCLI------ 212

Query: 126 VGTTHACKYWLFGGLGSRGLL 146
               H  KY LF      GLL
Sbjct: 213 ----HQPKYSLFERWVEDGLL 229


>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
           Rhodobacter Sphaeroides Kd131
 pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
           Rhodobacter Sphaeroides Kd131
          Length = 476

 Score = 26.6 bits (57), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 97  FTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHA 131
           F  A A LR LP +    S  L+GCV  L+  T A
Sbjct: 362 FAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRA 396


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,012,626
Number of Sequences: 62578
Number of extensions: 241063
Number of successful extensions: 577
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 5
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)