BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030321
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32159|YURR_BACSU Uncharacterized oxidoreductase YurR OS=Bacillus subtilis (strain
168) GN=yurR PE=3 SV=1
Length = 372
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 40 SDAWLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTG 99
SD ++ + ++ G+T E N + + + E+L KA A+ PG+ + +
Sbjct: 248 SDQYILSFDNGRIVAGATHE----NDAGLDDLRVTAGGQHEVLSKALAVAPGLADAAAVE 303
Query: 100 ARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159
R G R P TP G P++G V N+ G + GLG+ GL + G +A+ V
Sbjct: 304 TRVGFR---PFTP-GFLPVVGAVPNVQG------LYAANGLGASGLTMGPFLGAELAKLV 353
Query: 160 L 160
L
Sbjct: 354 L 354
>sp|C6BSP9|ATPD_DESAD ATP synthase subunit delta OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=atpH PE=3
SV=1
Length = 183
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 65 SSPIVSADEASKALEELLPKASAIYPGMKNW-SFTGARAGLRALPPMTPNGSPPLLGCVD 123
+P+ SADE LE+LL K SA P +KN+ S + L P+ P + G +D
Sbjct: 51 QNPVFSADEKKAVLEKLLEKTSA-GPVVKNFCSLLADKGRL----PVIPEIASDYAGMLD 105
Query: 124 NLVGTTH 130
N+ G
Sbjct: 106 NVQGVVR 112
>sp|Q47RT4|RIMO_THEFY Ribosomal protein S12 methylthiotransferase RimO OS=Thermobifida
fusca (strain YX) GN=rimO PE=3 SV=1
Length = 483
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 23 LPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEEL 81
+P F G Y +L +A WLA QG R L + S NS+ +ALE+L
Sbjct: 201 IPSFRGAYLSRKPEDVLREAEWLAGQGVRELFL------VSENSTSYGKDLGDVRALEKL 254
Query: 82 LPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYW 135
LP+ +AI PG++ + + P P G +D L GT Y+
Sbjct: 255 LPRLAAI-PGIERVRVS----------YLQPAEVRP--GLIDVLTGTPGVVPYF 295
>sp|Q6IR80|CL066_XENLA UPF0536 protein C12orf66 homolog OS=Xenopus laevis PE=2 SV=1
Length = 442
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 2 LPELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQGSRSLLMGSTKEWK 61
L EL L + C V AHM++ DF + Y ++ S ++ + +L K++
Sbjct: 117 LEELLSHLSEQLCYFVQAHMEIADFYEKMY-----TLSSQKFINAEELVKILEAILKKYS 171
Query: 62 SRNSSPIVSADEASKALE-----ELLPKASAIYPGMKNWSFTGARAGLR 105
SR P +S E+ LE LL IY W F A L
Sbjct: 172 SRFHHPTLSPLESGFQLEVDVLAHLLKAQFLIY----EWKFLPALVNLH 216
>sp|Q2J750|RIMO_FRASC Ribosomal protein S12 methylthiotransferase RimO OS=Frankia sp.
(strain CcI3) GN=rimO PE=3 SV=1
Length = 523
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 14 CRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSAD 72
C A +P F G + +L++A WLA QG+R L++ S NS+
Sbjct: 192 CDRRCAFCAIPSFRGSHVSRSPDDVLAEAEWLAGQGARELVL------VSENSTSYGKDL 245
Query: 73 EASKALEELLPKASAI 88
+ALE+LLP+ +A+
Sbjct: 246 GDLRALEKLLPQLAAV 261
>sp|Q41768|ILVB1_MAIZE Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3
SV=1
Length = 638
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 ELSGKLPLRTCRGVIAHMQL-PDFIGEYYPDHGPSILSDAWLAVQGSRSLLMGSTKE 59
++GK+ R I H+ + P IG+ H SI +D LA+QG +LL GST +
Sbjct: 345 RVTGKIEAFASRAKIVHVDIDPAEIGKNKQPH-VSICADVKLALQGMNALLEGSTSK 400
>sp|O85228|HCNC_PSEFL Hydrogen cyanide synthase subunit HcnC OS=Pseudomonas fluorescens
GN=hcnC PE=2 SV=1
Length = 417
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 40 SDAWLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTG 99
SD ++A + + +L+GST E K + + + L+ A P + + +
Sbjct: 285 SDCYMAQKDNGEILIGSTTEDKGFDVTTTYPE------INGLVQGAVRCVPELAHVNLKR 338
Query: 100 ARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159
AGLR P +P+ P+LG +D + G +AC ++ G+L G L+ + V
Sbjct: 339 CWAGLR---PGSPD-ELPILGPMDGVEGYLNACGHF------RTGILTSAITGVLLDKLV 388
Query: 160 LACSENIIPSEVTSW 174
+E +P ++T +
Sbjct: 389 ---NEEALPLDITPF 400
>sp|Q41769|ILVB2_MAIZE Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3
SV=1
Length = 638
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 ELSGKLPLRTCRGVIAHMQL-PDFIGEYYPDHGPSILSDAWLAVQGSRSLLMGSTKE 59
++GK+ R I H+ + P IG+ H SI +D LA+QG +LL GST +
Sbjct: 345 RVTGKIEAFAGRAKIVHIDIDPAEIGKNKQPH-VSICADVKLALQGMNTLLEGSTSK 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,996,450
Number of Sequences: 539616
Number of extensions: 2994328
Number of successful extensions: 6822
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6821
Number of HSP's gapped (non-prelim): 14
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)