Query 030321
Match_columns 179
No_of_seqs 173 out of 1153
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03197 MnmC_Cterm tRNA U-34 99.9 4.2E-23 9E-28 174.3 13.1 139 8-167 198-367 (381)
2 PRK01747 mnmC bifunctional tRN 99.9 4.2E-22 9.2E-27 179.2 13.7 144 8-166 471-637 (662)
3 TIGR02352 thiamin_ThiO glycine 99.9 4E-22 8.7E-27 164.4 12.4 138 9-163 199-337 (337)
4 PRK00711 D-amino acid dehydrog 99.9 2.7E-21 5.9E-26 164.5 11.3 149 3-173 262-413 (416)
5 TIGR01373 soxB sarcosine oxida 99.8 2.6E-20 5.7E-25 158.4 14.6 148 6-174 248-397 (407)
6 COG0665 DadA Glycine/D-amino a 99.8 4.7E-20 1E-24 155.0 11.8 149 7-170 222-375 (387)
7 PRK11259 solA N-methyltryptoph 99.8 1.7E-19 3.6E-24 151.4 14.9 152 8-174 212-372 (376)
8 TIGR01377 soxA_mon sarcosine o 99.8 4.6E-19 1E-23 148.9 14.0 156 3-174 205-372 (380)
9 PRK12409 D-amino acid dehydrog 99.8 2.5E-19 5.5E-24 152.4 10.9 139 5-164 265-408 (410)
10 TIGR03329 Phn_aa_oxid putative 99.8 4.2E-18 9E-23 147.5 12.9 144 9-165 246-397 (460)
11 TIGR03364 HpnW_proposed FAD de 99.7 6.4E-17 1.4E-21 135.6 10.2 133 2-153 201-364 (365)
12 PF01266 DAO: FAD dependent ox 99.7 2.3E-17 4.9E-22 136.0 5.8 144 3-158 208-358 (358)
13 KOG2853 Possible oxidoreductas 99.6 5.8E-15 1.3E-19 121.5 11.0 140 8-163 339-483 (509)
14 KOG3923 D-aspartate oxidase [A 99.6 9E-15 2E-19 118.1 8.6 138 4-161 197-335 (342)
15 PRK11728 hydroxyglutarate oxid 99.4 2.2E-12 4.8E-17 109.5 9.6 137 8-159 216-393 (393)
16 TIGR03377 glycerol3P_GlpA glyc 99.3 2.5E-11 5.5E-16 106.7 14.3 138 6-161 198-346 (516)
17 PRK11101 glpA sn-glycerol-3-ph 99.3 3.8E-11 8.1E-16 106.4 14.2 141 6-162 219-370 (546)
18 KOG2844 Dimethylglycine dehydr 99.3 1.7E-11 3.6E-16 108.2 10.3 144 8-169 253-408 (856)
19 PRK13369 glycerol-3-phosphate 99.0 1.3E-08 2.8E-13 89.4 14.3 137 9-162 229-377 (502)
20 PLN02464 glycerol-3-phosphate 99.0 6.2E-09 1.4E-13 93.7 12.3 139 10-161 310-453 (627)
21 PRK12266 glpD glycerol-3-phosp 99.0 2E-08 4.3E-13 88.4 14.6 140 8-161 229-377 (508)
22 KOG2852 Possible oxidoreductas 99.0 1.8E-09 4E-14 87.5 7.1 139 8-163 214-364 (380)
23 KOG2820 FAD-dependent oxidored 98.9 4.4E-09 9.6E-14 86.8 8.4 88 77-175 303-390 (399)
24 COG0578 GlpA Glycerol-3-phosph 97.3 0.0091 2E-07 53.0 13.7 138 9-161 240-385 (532)
25 COG0579 Predicted dehydrogenas 96.5 0.012 2.7E-07 50.9 7.5 143 9-162 224-375 (429)
26 KOG2665 Predicted FAD-dependen 92.6 0.45 9.7E-06 40.0 6.5 83 76-160 370-452 (453)
27 KOG0042 Glycerol-3-phosphate d 90.7 1.6 3.6E-05 39.1 8.2 59 46-109 338-399 (680)
28 TIGR02032 GG-red-SF geranylger 88.1 3.7 7.9E-05 32.6 8.1 91 43-159 198-295 (295)
29 TIGR02733 desat_CrtD C-3',4' d 85.5 5.1 0.00011 35.0 8.2 31 132-162 459-491 (492)
30 PRK10157 putative oxidoreducta 76.7 1.4 3.1E-05 38.0 1.6 54 100-161 269-333 (428)
31 PRK10015 oxidoreductase; Provi 75.3 17 0.00036 31.5 7.8 61 92-161 268-333 (429)
32 PRK06185 hypothetical protein; 64.2 64 0.0014 27.1 9.0 129 8-160 178-319 (407)
33 TIGR02734 crtI_fam phytoene de 64.0 24 0.00052 30.9 6.5 31 132-162 459-491 (502)
34 PRK05257 malate:quinone oxidor 61.3 21 0.00045 31.6 5.6 72 81-161 371-449 (494)
35 TIGR02730 carot_isom carotene 60.8 40 0.00087 29.5 7.3 31 132-162 459-491 (493)
36 PRK13339 malate:quinone oxidor 58.3 27 0.00058 31.1 5.7 71 81-160 372-450 (497)
37 COG0644 FixC Dehydrogenases (f 52.4 1.5E+02 0.0032 25.2 9.2 58 95-163 246-307 (396)
38 PRK07233 hypothetical protein; 51.6 79 0.0017 26.6 7.4 79 75-162 343-430 (434)
39 TIGR01320 mal_quin_oxido malat 48.7 55 0.0012 28.9 6.1 70 82-160 366-443 (483)
40 TIGR02732 zeta_caro_desat caro 41.3 1.5E+02 0.0032 26.0 7.7 76 75-159 389-473 (474)
41 PLN02697 lycopene epsilon cycl 40.8 2.7E+02 0.0059 25.0 12.8 136 9-163 261-414 (529)
42 PLN02487 zeta-carotene desatur 33.1 2.2E+02 0.0047 25.9 7.5 80 75-163 465-553 (569)
43 TIGR03467 HpnE squalene-associ 32.3 1.8E+02 0.0038 24.3 6.5 77 75-160 333-418 (419)
44 PRK10693 response regulator of 29.5 1.1E+02 0.0024 25.0 4.7 29 133-161 165-195 (303)
45 COG5321 Uncharacterized protei 28.5 35 0.00076 25.0 1.3 15 131-145 106-120 (164)
46 PF14606 Lipase_GDSL_3: GDSL-l 27.8 72 0.0016 24.4 3.0 23 135-158 36-58 (178)
47 TIGR01789 lycopene_cycl lycope 27.4 3.8E+02 0.0082 22.6 9.1 98 43-160 182-286 (370)
48 PLN02612 phytoene desaturase 27.2 2.2E+02 0.0047 25.7 6.5 80 75-163 455-548 (567)
49 TIGR02023 BchP-ChlP geranylger 24.1 2.9E+02 0.0062 23.2 6.4 22 140-161 279-300 (388)
50 PF05834 Lycopene_cycl: Lycope 23.9 4.3E+02 0.0094 22.1 9.0 58 43-109 188-245 (374)
51 TIGR03419 NifU_clost FeS clust 23.4 1.2E+02 0.0026 21.3 3.4 31 133-163 45-75 (121)
52 TIGR01994 SUF_scaf_2 SUF syste 21.0 1.5E+02 0.0033 21.4 3.5 31 133-163 49-79 (137)
53 TIGR01999 iscU FeS cluster ass 20.8 1.5E+02 0.0033 20.9 3.5 31 133-163 49-79 (124)
54 KOG4387 Ornithine decarboxylas 20.5 87 0.0019 24.1 2.2 19 100-123 156-174 (191)
No 1
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.90 E-value=4.2e-23 Score=174.33 Aligned_cols=139 Identities=22% Similarity=0.399 Sum_probs=111.7
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHh
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
.+||.|+|||+++++++... ...+.. +..+.|+.+. ++. +++|+|++.. ..+..++ ....+.+++++.
T Consensus 198 ~~pi~p~rg~~~~~~~~~~~-~~~~~~---~~~~~y~~p~~~g~-~~iG~t~~~~--~~~~~~~----~~~~~~~~~~~~ 266 (381)
T TIGR03197 198 HLPLRPVRGQVSHLPATEAL-SALKTV---LCYDGYLTPANNGE-HCIGASYDRN--DDDLALR----EADHAENLERLA 266 (381)
T ss_pred cCCccccccceeeccCCCcc-cccCce---EeCCceecccCCCc-eEeecccCCC--CCCCCcC----HHHHHHHHHHHH
Confidence 58999999999999764311 111211 2234588876 554 9999998874 3455556 566788899999
Q ss_pred ccCCCCC-----CceeeeeeEEEeecCCCCCCCCCceeeccCC-------------------------CCCCcccCcEEE
Q 030321 87 AIYPGMK-----NWSFTGARAGLRALPPMTPNGSPPLLGCVDN-------------------------LVGTTHACKYWL 136 (179)
Q Consensus 87 ~~~P~l~-----~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~-------------------------~~~~~~~~~l~~ 136 (179)
+++|.++ +.++.+.|+|+|++|| |++|+||++|+ .+ |+|+
T Consensus 267 ~~~P~l~~~~~~~~~~~~~~~G~r~~t~----D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~ 336 (381)
T TIGR03197 267 ECLPALAWASEVDISALQGRVGVRCASP----DHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYP------GLYV 336 (381)
T ss_pred HhCcccchhhccCccccCceEEEeccCC----CcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCC------CeEE
Confidence 9999987 7899999999999999 99999999987 55 9999
Q ss_pred EeecCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 030321 137 FGGLGSRGLLYHGWFGKLVAQAVLACSENII 167 (179)
Q Consensus 137 ~~G~g~~G~~~ap~~g~~lA~~i~~~~~~~~ 167 (179)
++||+|+||++||++|++||++|++++.+..
T Consensus 337 a~G~~g~G~~~ap~~g~~la~~i~~~~~~~~ 367 (381)
T TIGR03197 337 LGGLGSRGLTSAPLAAEILAAQICGEPLPLE 367 (381)
T ss_pred EecccchHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999998876543
No 2
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.88 E-value=4.2e-22 Score=179.24 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=109.1
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEe-c-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAV-Q-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~-~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
.+||+|+|||+++++..... +...+.+..++|+.| . ++. +++|+|++.. +.+..++ .+..+++++++
T Consensus 471 ~lpl~p~RGqv~~~~~~~~~----~~~~~~~~~~~Y~~p~~~~g~-~~iGat~~~~--~~~~~~~----~~~~~~~~~~l 539 (662)
T PRK01747 471 HLPLYSVRGQVSHLPTTPAL----SALKQVLCYDGYLTPQPANGT-HCIGASYDRD--DTDTAFR----EADHQENLERL 539 (662)
T ss_pred CCCcccccceEEeecCCccc----cccCceeECCceeCCCCCCCc-eEeCcccCCC--CCCCCCC----HHHHHHHHHHH
Confidence 58999999999998754311 111112334568888 5 554 9999999874 4455556 56667888889
Q ss_pred hccCCCC-----CCceeeeeeEEEeecCCCCCCCCCceeeccCCCCC----------------CcccCcEEEEeecCCcc
Q 030321 86 SAIYPGM-----KNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVG----------------TTHACKYWLFGGLGSRG 144 (179)
Q Consensus 86 ~~~~P~l-----~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~----------------~~~~~~l~~~~G~g~~G 144 (179)
.+++|.+ .+.++.+.|+|+|++|| |++|+||++++... .+..+|+|+++||||+|
T Consensus 540 ~~~~P~l~~~~~~~~~~~~~~aG~R~~tp----D~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs~G 615 (662)
T PRK01747 540 AECLPQALWAKEVDVSALQGRVGFRCASR----DRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGSRG 615 (662)
T ss_pred HHhCCCchhhhccCccccCceEEEeccCC----CcccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccccH
Confidence 9999987 56788999999999999 99999999543100 01123999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC
Q 030321 145 LLYHGWFGKLVAQAVLACSENI 166 (179)
Q Consensus 145 ~~~ap~~g~~lA~~i~~~~~~~ 166 (179)
|++||++|++||++|++++.+.
T Consensus 616 l~~ap~~a~~lA~li~g~~~p~ 637 (662)
T PRK01747 616 LCSAPLGAELLASQIEGEPLPL 637 (662)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999877543
No 3
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.88 E-value=4e-22 Score=164.42 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=109.9
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhc
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASA 87 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (179)
+|++|+|||++.++.+.......+..........|+.|. ++ ++++|++++.. ..+..++ .+..+.+++++.+
T Consensus 199 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g-~~~iG~~~~~~--~~~~~~~----~~~~~~l~~~~~~ 271 (337)
T TIGR02352 199 LPLRPVRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDG-RLVVGATMEES--GFDTTPT----LGGIKELLRDAYT 271 (337)
T ss_pred CCccccCceEEEeeccccccCCcccceEEEcCCEEEEEcCCC-eEEEEEecccc--CccCCCC----HHHHHHHHHHHHH
Confidence 789999999999986532111122211111123477776 55 49999998763 3444556 6778899999999
Q ss_pred cCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 88 IYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 88 ~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
+||.+.+.++.+.|+|+|++|+ |++|+||++|+.+ |+|+++||||+||+++|++|+++|++|++++
T Consensus 272 ~~P~l~~~~~~~~~~g~r~~t~----D~~piig~~~~~~------~~~~~~g~~g~G~~~~p~~g~~la~~i~~~~ 337 (337)
T TIGR02352 272 ILPALKEARLLETWAGLRPGTP----DNLPYIGEHPEDR------RLLIATGHYRNGILLAPATAEVIADLILGKE 337 (337)
T ss_pred hCCCcccCcHHHheecCCCCCC----CCCCEeCccCCCC------CEEEEcccccCceehhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999 9999999999888 9999999999999999999999999999753
No 4
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.86 E-value=2.7e-21 Score=164.47 Aligned_cols=149 Identities=19% Similarity=0.291 Sum_probs=112.0
Q ss_pred ccCCCCCCceecceeEEEEeCCCCCCCCCCCCCCcccc-Ce-eEEe-cCCCeEEEeeccCCCCCCCCCccChHHHHHHHH
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILS-DA-WLAV-QGSRSLLMGSTKEWKSRNSSPIVSADEASKALE 79 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~-~~-y~~~-~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~ 79 (179)
+.++.++|+.|+|||++.++.... ...|.. .+.. .. +..+ .+++ +++|++.+.. +.+..++ .+..+
T Consensus 262 ~~~g~~~pi~p~rg~~~~~~~~~~--~~~p~~--~~~~~~~~~~~~~~~~~-~~iG~~~~~~--~~~~~~~----~~~~~ 330 (416)
T PRK00711 262 KPLGVDIPVYPLKGYSLTVPITDE--DRAPVS--TVLDETYKIAITRFDDR-IRVGGMAEIV--GFDLRLD----PARRE 330 (416)
T ss_pred HHhCCCcccCCccceEEEEecCCC--CCCCce--eEEecccCEEEeecCCc-eEEEEEEEec--CCCCCCC----HHHHH
Confidence 334556899999999987754321 111221 1111 12 3333 3565 9999887652 3444555 56677
Q ss_pred HHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHH
Q 030321 80 ELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 80 ~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i 159 (179)
.+.+.+.++||.+++.++.+.|+|+|++|+ |++|+||+++ .+ |+|+++||+|+||++||++|+++|++|
T Consensus 331 ~l~~~~~~~~P~l~~~~~~~~w~G~r~~t~----D~~PiIG~~~-~~------gl~~a~G~~g~G~~~ap~~g~~la~li 399 (416)
T PRK00711 331 TLEMVVRDLFPGGGDLSQATFWTGLRPMTP----DGTPIVGATR-YK------NLWLNTGHGTLGWTMACGSGQLLADLI 399 (416)
T ss_pred HHHHHHHHHCCCcccccccceeeccCCCCC----CCCCEeCCcC-CC------CEEEecCCchhhhhhhhhHHHHHHHHH
Confidence 888889999999999999999999999999 9999999986 36 999999999999999999999999999
Q ss_pred HcCCCCCCchhhhh
Q 030321 160 LACSENIIPSEVTS 173 (179)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (179)
++++.+.+...|+.
T Consensus 400 ~g~~~~~~~~~f~~ 413 (416)
T PRK00711 400 SGRKPAIDADDLSV 413 (416)
T ss_pred cCCCCCCCccccCc
Confidence 99887666556654
No 5
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.85 E-value=2.6e-20 Score=158.35 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=112.0
Q ss_pred CCCCCceecceeEEEEeCCCCCCCCCCCCCCccccC-eeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHH
Q 030321 6 SGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSD-AWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLP 83 (179)
Q Consensus 6 ~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~-~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~ 83 (179)
+..+|+++.++|++.+++.... .+..+.. ... .|+.+. ++ ++++|++.+.. .+++...+ ....+.+++
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~y~~p~~~g-~~~ig~~~~~~-~~~~~~~~----~~~~~~l~~ 317 (407)
T TIGR01373 248 GFRLPIESHPLQALVSEPLKPI---IDTVVMS-NAVHFYVSQSDKG-ELVIGGGIDGY-NSYAQRGN----LPTLEHVLA 317 (407)
T ss_pred CCCCCcCcccceEEEecCCCCC---cCCeEEe-CCCceEEEEcCCc-eEEEecCCCCC-CccCcCCC----HHHHHHHHH
Confidence 4458999999999887643211 1111100 022 377776 55 49999876532 23333344 567788999
Q ss_pred HHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 84 KASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 84 ~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
.+.++||.+++.++.+.|+|+|++|+ |++|+||++| .+ |+|+++||+|+|+++||++|+++|++|.++.
T Consensus 318 ~~~~~~P~l~~~~~~~~w~G~~~~t~----D~~PiIg~~~-~~------gl~~a~G~~g~G~~~ap~~G~~la~li~~~~ 386 (407)
T TIGR01373 318 AILEMFPILSRVRMLRSWGGIVDVTP----DGSPIIGKTP-LP------NLYLNCGWGTGGFKATPASGTVFAHTLARGE 386 (407)
T ss_pred HHHHhCCCcCCCCeEEEeccccccCC----CCCceeCCCC-CC------CeEEEeccCCcchhhchHHHHHHHHHHhCCC
Confidence 99999999999999999999999999 9999999997 36 9999999999999999999999999999877
Q ss_pred CCCCchhhhhh
Q 030321 164 ENIIPSEVTSW 174 (179)
Q Consensus 164 ~~~~~~~~~~~ 174 (179)
+..+...|+.-
T Consensus 387 ~~~~~~~f~~~ 397 (407)
T TIGR01373 387 PHDINAPFTLD 397 (407)
T ss_pred CCCCCcccCHh
Confidence 65555556543
No 6
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.83 E-value=4.7e-20 Score=155.03 Aligned_cols=149 Identities=24% Similarity=0.334 Sum_probs=110.8
Q ss_pred CCCCceecceeEEEEeCCCCCCC--CCCCCCCccccCeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHH
Q 030321 7 GKLPLRTCRGVIAHMQLPDFIGE--YYPDHGPSILSDAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLP 83 (179)
Q Consensus 7 ~~lpl~p~rGq~~~~~~~~~~~~--~~p~~~~~i~~~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~ 83 (179)
..+|+.|+|||++.+++...... ..+..........|+.+. ++. +++|++.+... ..+.....+ .....++++
T Consensus 222 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~-~~~g~~~~~~~-~~~~~~~~~--~~~~~~l~~ 297 (387)
T COG0665 222 LPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGR-LRVGGTDEEGG-DDPSDPERE--DLVIAELLR 297 (387)
T ss_pred CcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCc-EEEeecccccC-CCCccccCc--chhHHHHHH
Confidence 34789999999999997643100 000011111123488886 665 99999988741 122222210 114678999
Q ss_pred HHhccCCCCCCceeeeeeEEEeecC-CCCCCCCCceeec-cCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 84 KASAIYPGMKNWSFTGARAGLRALP-PMTPNGSPPLLGC-VDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 84 ~~~~~~P~l~~~~i~~~w~G~R~~t-p~~~~D~~PiiG~-~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
.+.+++|.+.+..+.+.|+|+|++| | |++|+||+ .+ .+ |+|+++|||++|++++|++|+++|++|++
T Consensus 298 ~~~~~~P~l~~~~~~~~w~g~~~~t~p----d~~P~iG~~~~-~~------~l~~a~G~~~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 298 VARALLPGLADAGIEAAWAGLRPPTTP----DGLPVIGRAAP-LP------NLYVATGHGGHGFTLAPALGRLLADLILG 366 (387)
T ss_pred HHHHhCccccccccceeeeccccCCCC----CCCceeCCCCC-CC------CEEEEecCCCcChhhccHHHHHHHHHHcC
Confidence 9999999999999999999999988 9 99999996 66 78 99999999999999999999999999999
Q ss_pred CCCCCCchh
Q 030321 162 CSENIIPSE 170 (179)
Q Consensus 162 ~~~~~~~~~ 170 (179)
++...+...
T Consensus 367 ~~~~~~~~~ 375 (387)
T COG0665 367 GEPELDLRP 375 (387)
T ss_pred CCCCCCccc
Confidence 877655543
No 7
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.83 E-value=1.7e-19 Score=151.44 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=109.1
Q ss_pred CCCceecceeEEEEeCCCCCC--CCCCCCCCccc-cC-eeEEecCCCe-EEEeeccCCC----CCCCCCccChHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIG--EYYPDHGPSIL-SD-AWLAVQGSRS-LLMGSTKEWK----SRNSSPIVSADEASKAL 78 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~--~~~p~~~~~i~-~~-~y~~~~~g~~-~~iG~t~e~~----~~~~~~~~~~~~~~~~~ 78 (179)
.+|+.|+|+|++.+++..... ..+|....... +. .|+.+..+++ +++|++.+.. ..+.+...+ .....
T Consensus 212 ~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~---~~~~~ 288 (376)
T PRK11259 212 ELPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVT---VAEDG 288 (376)
T ss_pred cCCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCC---cHHHH
Confidence 489999999999998642211 11221110000 22 2555653324 8999887521 111111111 14567
Q ss_pred HHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHH
Q 030321 79 EELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQA 158 (179)
Q Consensus 79 ~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~ 158 (179)
+.+++.+.++||.+++ +.+.|+|+|++|| |++|+||++|+.+ |+|+++||+|+|++++|++|+++|++
T Consensus 289 ~~l~~~~~~~~P~~~~--~~~~~~g~~~~t~----D~~P~ig~~~~~~------gl~~~~G~~g~G~~~ap~~g~~la~l 356 (376)
T PRK11259 289 AELRPFLRNYLPGVGP--CLRGAACTYTNTP----DEHFIIDTLPGHP------NVLVASGCSGHGFKFASVLGEILADL 356 (376)
T ss_pred HHHHHHHHHHCCCCCc--cccceEEecccCC----CCCceeecCCCCC------CEEEEecccchhhhccHHHHHHHHHH
Confidence 8888999999998876 7889999999999 9999999999988 99999999999999999999999999
Q ss_pred HHcCCCCCCchhhhhh
Q 030321 159 VLACSENIIPSEVTSW 174 (179)
Q Consensus 159 i~~~~~~~~~~~~~~~ 174 (179)
|.+++++.+...|+.-
T Consensus 357 i~~~~~~~~~~~~~~~ 372 (376)
T PRK11259 357 AQDGTSDFDLSPFSLS 372 (376)
T ss_pred HhcCCCCCCcCccCcc
Confidence 9988876665566543
No 8
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.81 E-value=4.6e-19 Score=148.94 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=109.7
Q ss_pred ccCCCCCCceecceeEEEEeCCCCC----CCCCCCCCCcccc-CeeEEec-C-CCeEEEeeccCCCC-----CCCCCccC
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDFI----GEYYPDHGPSILS-DAWLAVQ-G-SRSLLMGSTKEWKS-----RNSSPIVS 70 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~~----~~~~p~~~~~i~~-~~y~~~~-~-g~~~~iG~t~e~~~-----~~~~~~~~ 70 (179)
+.++..+|+.+.|+|++.++..... +..+|..+..-.. ..|+.|. + ++ +++|+...... ...+..++
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 283 (380)
T TIGR01377 205 SPLGIEIPLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLNPHIYGLPSFEYPG-LMKVYYHHGQQIDPDERDCPFGAD 283 (380)
T ss_pred hhcccCCCceEEEEEEEEEecCCccccCccCCCCEEEEeCCCCceEecCCCCCCc-eEEEEeCCCCccCcccccCCCCCC
Confidence 4455568999999999888653211 1122322111001 1366665 3 34 66664332110 11122344
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHH
Q 030321 71 ADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGW 150 (179)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~ 150 (179)
....+.+.+.+.+++|.+++.. .+.|+|+|++|| |..|+||++|+++ |+|+++||+++||++||.
T Consensus 284 ----~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~t~----D~~piIg~~p~~~------~l~va~G~~g~G~~~~p~ 348 (380)
T TIGR01377 284 ----IEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTNTP----DEHFVIDLHPKYD------NVVIGAGFSGHGFKLAPV 348 (380)
T ss_pred ----HHHHHHHHHHHHHHCCCCCCCc-ceeeEEEeccCC----CCCeeeecCCCCC------CEEEEecCCccceeccHH
Confidence 5678888899999999998644 578999999999 9999999999999 999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhhhh
Q 030321 151 FGKLVAQAVLACSENIIPSEVTSW 174 (179)
Q Consensus 151 ~g~~lA~~i~~~~~~~~~~~~~~~ 174 (179)
+|+++|++|+++.++.+...|+.-
T Consensus 349 ~g~~la~li~~~~~~~~~~~f~~~ 372 (380)
T TIGR01377 349 VGKILAELAMKLKPSYDLAIFSLN 372 (380)
T ss_pred HHHHHHHHHhcCCCCCCccccChh
Confidence 999999999998876655566543
No 9
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.80 E-value=2.5e-19 Score=152.44 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=104.5
Q ss_pred CCCCCCceecceeEEEEeCCCCC-CCCCCCCCCccc-cCeeEEe---cCCCeEEEeeccCCCCCCCCCccChHHHHHHHH
Q 030321 5 LSGKLPLRTCRGVIAHMQLPDFI-GEYYPDHGPSIL-SDAWLAV---QGSRSLLMGSTKEWKSRNSSPIVSADEASKALE 79 (179)
Q Consensus 5 l~~~lpl~p~rGq~~~~~~~~~~-~~~~p~~~~~i~-~~~y~~~---~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~ 79 (179)
++..+|+.|+|||+++++..+.. ....|... +. ...|+.+ ..++ +++|++.+.. +.+..++ .+.++
T Consensus 265 ~~~~~~i~p~~g~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~-~~igg~~~~~--~~~~~~~----~~~~~ 335 (410)
T PRK12409 265 LGDRVNVYPVKGYSITVNLDDEASRAAAPWVS--LLDDSAKIVTSRLGADR-FRVAGTAEFN--GYNRDIR----ADRIR 335 (410)
T ss_pred hCCCCccccCCceEEEeecCCccccccCCcee--eeecCCcEEEEecCCCc-EEEEEEEEec--CCCCCCC----HHHHH
Confidence 44457999999999988653321 01122111 11 2234432 2455 8899987763 3444555 66788
Q ss_pred HHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHH
Q 030321 80 ELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 80 ~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i 159 (179)
.+++++.++||.+++..+. .|+|+|++|+ |++|+||+.+ .+ |+|+++||+|+||++||++|++||++|
T Consensus 336 ~l~~~~~~~~P~l~~~~~~-~w~G~r~~t~----D~~PiiG~~~-~~------~l~~~~G~~~~G~~~ap~~g~~lA~~i 403 (410)
T PRK12409 336 PLVDWVRRNFPDVSTRRVV-PWAGLRPMMP----NMMPRVGRGR-RP------GVFYNTGHGHLGWTLSAATADLVAQVV 403 (410)
T ss_pred HHHHHHHHhCCCCCccccc-eecccCCCCC----CCCCeeCCCC-CC------CEEEecCCcccchhhcccHHHHHHHHH
Confidence 9999999999999888766 7999999999 9999999965 46 999999999999999999999999999
Q ss_pred HcCCC
Q 030321 160 LACSE 164 (179)
Q Consensus 160 ~~~~~ 164 (179)
+++.+
T Consensus 404 ~~~~~ 408 (410)
T PRK12409 404 AQKLP 408 (410)
T ss_pred cCCCC
Confidence 87654
No 10
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.77 E-value=4.2e-18 Score=147.49 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=100.8
Q ss_pred CCceecceeEEEEeCCCCCC--CCCCCCCCccccC---eeEEec-CCCeEEEeeccCCC-CCC-CCCccChHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQLPDFIG--EYYPDHGPSILSD---AWLAVQ-GSRSLLMGSTKEWK-SRN-SSPIVSADEASKALEE 80 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~--~~~p~~~~~i~~~---~y~~~~-~g~~~~iG~t~e~~-~~~-~~~~~~~~~~~~~~~~ 80 (179)
.++.|+++|++.+++..... ..++......... .|+.+. +++ +++|+..... ..+ .+...+ ......+.
T Consensus 246 ~~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgr-ll~G~~~~~~~~~~~~~~~~~--~~~~~~~~ 322 (460)
T TIGR03329 246 RSIAIVSSDMVITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGR-LMLGKGGNTFAYGGRMLPVFN--QPSPYEAL 322 (460)
T ss_pred CeEEEeccceEecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCc-EEEcCCccccccCcccccccC--CchHHHHH
Confidence 46788999998887643210 0111111000011 266665 554 9999753211 001 011000 00334567
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
+.+.+.++||.|++.++.+.|+|+|++|+ |++|+||++++.+ |+|+++||+|+|+++||++|++||++|+
T Consensus 323 l~~~~~~~fP~L~~~~i~~~W~G~~~~t~----D~~P~iG~~~~~~------gl~~a~G~~G~Gv~~a~~~G~~lA~li~ 392 (460)
T TIGR03329 323 LTRSLRKFFPALAEVPIAASWNGPSDRSV----TGLPFFGRLNGQP------NVFYGFGYSGNGVAPSRMGGQILSSLVL 392 (460)
T ss_pred HHHHHHHhCCCcCCCeeeEEEeceeCCCC----CCCceeeeecCCC------CEEEEeCcCCCChhHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999 9999999998878 9999999999999999999999999999
Q ss_pred cCCCC
Q 030321 161 ACSEN 165 (179)
Q Consensus 161 ~~~~~ 165 (179)
+++.+
T Consensus 393 g~~~~ 397 (460)
T TIGR03329 393 GLDNP 397 (460)
T ss_pred CCCCc
Confidence 86543
No 11
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.70 E-value=6.4e-17 Score=135.56 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=92.5
Q ss_pred CccCCCCCCceecceeEEEEeCCCCCCC------CC-----------CC----------CCCccc--cC-eeEEec-CCC
Q 030321 2 LPELSGKLPLRTCRGVIAHMQLPDFIGE------YY-----------PD----------HGPSIL--SD-AWLAVQ-GSR 50 (179)
Q Consensus 2 lp~l~~~lpl~p~rGq~~~~~~~~~~~~------~~-----------p~----------~~~~i~--~~-~y~~~~-~g~ 50 (179)
++.++..+|++|+|||++.+++...... .+ |. ..+.+. +. .|+.|. +|+
T Consensus 201 ~~~~~~~~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 280 (365)
T TIGR03364 201 FPELFAASGVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGE 280 (365)
T ss_pred CcchhhccCcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCC
Confidence 4556556899999999999986531000 00 00 001111 12 377776 665
Q ss_pred eEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcc
Q 030321 51 SLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTH 130 (179)
Q Consensus 51 ~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~ 130 (179)
+++|++++.... .+...+ ....+.+.+.+.+++ .+++.++.+.|+|+|++|+ |..|+++.. .+
T Consensus 281 -~~iG~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~t~----d~~~v~~~~--~~---- 343 (365)
T TIGR03364 281 -LIIGDSHEYGLA-PDPFDD----EEIDNLILAEAKTIL-GLPDLDIVERWQGVYASSP----PAPIFLERP--DD---- 343 (365)
T ss_pred -EEecCcccccCC-CCCcch----HHHHHHHHHHHHHhc-CCCCCceEEEEeEEecCCC----CCCceecCC--CC----
Confidence 999999876311 111112 344556677777776 6888999999999999999 999999854 45
Q ss_pred cCcEEEEeecCCcchhHHHHHHH
Q 030321 131 ACKYWLFGGLGSRGLLYHGWFGK 153 (179)
Q Consensus 131 ~~~l~~~~G~g~~G~~~ap~~g~ 153 (179)
|+|+++||+|+||++||++|+
T Consensus 344 --g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 344 --GVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred --CeEEEEecCCCcccccccccC
Confidence 999999999999999999986
No 12
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.69 E-value=2.3e-17 Score=136.03 Aligned_cols=144 Identities=24% Similarity=0.420 Sum_probs=101.2
Q ss_pred ccCCCCCCceecceeEEEEeCCCCCCCCCCCCCCcccc--Ce-eEEecCCCeEEEeeccCCCCCCCCC-cc---ChHHHH
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILS--DA-WLAVQGSRSLLMGSTKEWKSRNSSP-IV---SADEAS 75 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~--~~-y~~~~~g~~~~iG~t~e~~~~~~~~-~~---~~~~~~ 75 (179)
+.++.++|++++||+++.++.............+.... .. |+.+..+. +++|.+........+. .. +.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~-~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 286 (358)
T PF01266_consen 208 PLLGLDLPLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGG-VLIGTADGNYDPGPSPEDSSGEDPDVDE 286 (358)
T ss_dssp HTTTTSSTEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTE-EEEEESECEEEESSSHHHHSHHHHHHHH
T ss_pred ecccccccccccceEEEEEccCCcccccccccccccccccccceecccccc-cccccccccccccccccccccccccccH
Confidence 44555569999999999999764321000000011111 23 66666664 8899332111011111 00 000112
Q ss_pred HHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHH
Q 030321 76 KALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLV 155 (179)
Q Consensus 76 ~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~l 155 (179)
+ ++++++++.+++|.+.+.++.+.|+|+|++|+ |+.|+||++|+.+ |+|+++|++|+||++||++|+++
T Consensus 287 ~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t~----d~~p~ig~~~~~~------~l~~~~g~~~~G~~~a~~~a~~~ 355 (358)
T PF01266_consen 287 E-IDELLERLARLLPGLGDAEVVRSWAGIRPFTP----DGRPIIGELPGSP------NLYLAGGHGGHGFTLAPGLAELL 355 (358)
T ss_dssp H-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEET----TSECEEEEESSEE------EEEEEECETTCHHHHHHHHHHHH
T ss_pred H-HHHhHHHHHHHHHHhhhccccccccceeeecc----CCCeeeeecCCCC------CEEEEECCCchHHHHHHHHHHHH
Confidence 3 67899999999999999999999999999999 9999999999888 99999999999999999999999
Q ss_pred HHH
Q 030321 156 AQA 158 (179)
Q Consensus 156 A~~ 158 (179)
||+
T Consensus 356 a~~ 358 (358)
T PF01266_consen 356 ADL 358 (358)
T ss_dssp HHH
T ss_pred hcC
Confidence 986
No 13
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.61 E-value=5.8e-15 Score=121.54 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=108.4
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEec--CCCeEEEeecc-CC-CCCCCCCccChHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQ--GSRSLLMGSTK-EW-KSRNSSPIVSADEASKALEELL 82 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~--~g~~~~iG~t~-e~-~~~~~~~~~~~~~~~~~~~~l~ 82 (179)
.+||.|.|-++.++..++.+....|.... ..+ |+... .++ +++|-+- |. ..+..+..++ +.-..+.+.
T Consensus 339 plPiepRKRyvyvi~~~~~PGl~~Pl~iD---psG~f~Rrdglg~n-fl~grsp~ed~~~d~~nldVD---~d~F~qkiw 411 (509)
T KOG2853|consen 339 PLPIEPRKRYVYVIFAPDVPGLDTPLTID---PSGVFFRRDGLGGN-FLCGRSPSEDEEPDHSNLDVD---HDYFYQKIW 411 (509)
T ss_pred cccCCccceeEEEEeCCCCCCCCCceeEC---CCccEEEecCCCCc-eecccCCccccCCCccccccC---hHHHHhhhh
Confidence 58999999999999877543333344332 235 77765 555 8887652 22 1122233444 356678888
Q ss_pred HHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcC
Q 030321 83 PKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 83 ~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~ 162 (179)
..+....|.++.++|..+|+|++...- .|..++||++|-+. |+|+++||+|||+..+|++|+.+|++|+++
T Consensus 412 P~L~nRVP~fetakVqsaWaGyyD~Nt---fD~ngViG~HP~y~------Nly~atGFsghGvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 412 PHLANRVPAFETAKVQSAWAGYYDHNT---FDDNGVIGEHPLYT------NLYMATGFSGHGVQQSPAVGRAIAELILDG 482 (509)
T ss_pred HHHHhcccccceeeeeehhcccccccc---cccCCcccCCccee------eeeeeecccccchhcchHHHHHHHHHHhcC
Confidence 999999999999999999999999543 39999999999888 999999999999999999999999999987
Q ss_pred C
Q 030321 163 S 163 (179)
Q Consensus 163 ~ 163 (179)
.
T Consensus 483 ~ 483 (509)
T KOG2853|consen 483 A 483 (509)
T ss_pred c
Confidence 5
No 14
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.57 E-value=9e-15 Score=118.10 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=104.7
Q ss_pred cCCCCCCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHH
Q 030321 4 ELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELL 82 (179)
Q Consensus 4 ~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~ 82 (179)
.|+++-.|+|+|||++.+++++... ....+ ... |+.|..+. +++|++.+.+ +++.+++ .+..+.++
T Consensus 197 ~L~gDd~~yPiRGqVl~V~ApWvkh----f~~~D--~~~ty~iP~~~~-V~lGg~~Q~g--~w~~ei~----~~D~~dIl 263 (342)
T KOG3923|consen 197 KLAGDDDLYPIRGQVLKVDAPWVKH----FIYRD--FSRTYIIPGTES-VTLGGTKQEG--NWNLEIT----DEDRRDIL 263 (342)
T ss_pred cccCCcceeeccceEEEeeCCceeE----EEEec--CCccEEecCCce-EEEccccccC--cccCcCC----hhhHHHHH
Confidence 4666667999999999999986421 11101 222 77788885 9999999984 7788888 77788999
Q ss_pred HHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 83 PKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 83 ~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
++..++.|.|..+++++.|+|+||..+.+|...- ++.. ...+.-+++..||||.|+++++.+|-..|.+++.
T Consensus 264 ~rc~aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e-~~~~------~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~ 335 (342)
T KOG3923|consen 264 ERCCALEPSLRHAEIIREWVGLRPGRKQVRLEAE-LRTR------GGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLD 335 (342)
T ss_pred HHHHHhCcccccceehhhhhcccCCCCceeeeee-eecC------CCccceeEeeccCCCCceecccchHHHHHHHHHH
Confidence 9999999999999999999999999883333110 0011 0122356899999999999999999999988764
No 15
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.38 E-value=2.2e-12 Score=109.50 Aligned_cols=137 Identities=13% Similarity=0.067 Sum_probs=95.8
Q ss_pred CCCceecceeEEEEeCCCC-C--CCCCCCCCCccccCe-eEEec-CCCeEEEeeccCCCC--CCCCCc-c----------
Q 030321 8 KLPLRTCRGVIAHMQLPDF-I--GEYYPDHGPSILSDA-WLAVQ-GSRSLLMGSTKEWKS--RNSSPI-V---------- 69 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~-~--~~~~p~~~~~i~~~~-y~~~~-~g~~~~iG~t~e~~~--~~~~~~-~---------- 69 (179)
++++.|+|||++.++.... . ..-+|...+.+...+ |+.+. +|+ +++|++..... .+++.. .
T Consensus 216 ~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~-~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~ 294 (393)
T PRK11728 216 DFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGS-VTVGPNAVLAFKREGYRKRDFSLRDLLEILT 294 (393)
T ss_pred CCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCC-EEECCCcceehhhcCccccCCCHHHHHHHHh
Confidence 4789999999999985421 1 011111111111223 78777 675 99997432211 233321 1
Q ss_pred -----------ChHHHHHHHHHH---------HHHHhccCCCCCCceeeeeeEEEee--cCCCCCCCCCceeeccCC-CC
Q 030321 70 -----------SADEASKALEEL---------LPKASAIYPGMKNWSFTGARAGLRA--LPPMTPNGSPPLLGCVDN-LV 126 (179)
Q Consensus 70 -----------~~~~~~~~~~~l---------~~~~~~~~P~l~~~~i~~~w~G~R~--~tp~~~~D~~PiiG~~~~-~~ 126 (179)
+ ...++++ ++.+.+++|.++...+.+.|+|+|| +++ |+.|+-+.+-. .+
T Consensus 295 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~----d~~~~~d~~i~~~~ 366 (393)
T PRK11728 295 YPGFWKLAQKHW----RSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSR----DGKLVDDFLFVETP 366 (393)
T ss_pred ccchHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCC----CCCccCceEEecCC
Confidence 2 4455566 5899999999999999999999999 899 99887776532 24
Q ss_pred CCcccCcEEEEeecCCcchhHHHHHHHHHHHHH
Q 030321 127 GTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 127 ~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i 159 (179)
+.+.+.|.-|.|+|.||.+|+.|++++
T Consensus 367 ------~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 367 ------RSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred ------CEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 899999999999999999999999863
No 16
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.34 E-value=2.5e-11 Score=106.65 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=96.8
Q ss_pred CCCCCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHH
Q 030321 6 SGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPK 84 (179)
Q Consensus 6 ~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (179)
+.++||.|.|||++.++..... ...+..... .++ |+.|.++. +++|.|.+..+...+..++ .+.++.+++.
T Consensus 198 g~~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~--~~g~~~~P~~~~-~liGtT~~~~~~~~~~~~~----~~~v~~ll~~ 269 (516)
T TIGR03377 198 GLDIRMFPAKGALLIMNHRINN-TVINRCRKP--SDADILVPGDTI-SIIGTTSERIDDPDDLPVT----QEEVDVLLRE 269 (516)
T ss_pred CCCCceecceEEEEEECCcccc-cccccccCC--CCCcEEEECCCe-EEEecCCCCCCCCCCCCCC----HHHHHHHHHH
Confidence 3368999999999999753211 000111111 233 77787665 8999987753223345566 6778899999
Q ss_pred HhccCCCCCCceeeeeeEEEeecCCCCCCC--------CCceeec--cCCCCCCcccCcEEEEeecCCcchhHHHHHHHH
Q 030321 85 ASAIYPGMKNWSFTGARAGLRALPPMTPNG--------SPPLLGC--VDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKL 154 (179)
Q Consensus 85 ~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D--------~~PiiG~--~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~ 154 (179)
+.+++|.+...++++.|+|+||...... | .+.|++. .++.+ |++.++| |+ ++.++++|+.
T Consensus 270 ~~~~~P~l~~~~i~~~~aGvRPl~~~~~-~~~~~~~sR~~~i~~~~~~~~~~------g~i~i~G--Gk-ltt~r~~Ae~ 339 (516)
T TIGR03377 270 GAKLAPMLAQTRILRAFAGVRPLVAVDD-DPSGRNISRGIVLLDHAERDGLP------GFITITG--GK-LTTYRLMAEW 339 (516)
T ss_pred HHHhCcccccCCEEEEEeecccccCCCC-CCCccccCCCeEEeecccccCCC------CeEEEec--ch-HHHHHHHHHH
Confidence 9999999999999999999999765110 1 2245553 24456 9999997 44 9999999999
Q ss_pred HHHHHHc
Q 030321 155 VAQAVLA 161 (179)
Q Consensus 155 lA~~i~~ 161 (179)
+++++..
T Consensus 340 ~~d~~~~ 346 (516)
T TIGR03377 340 ATDVVCK 346 (516)
T ss_pred HHHHHHH
Confidence 9999964
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.32 E-value=3.8e-11 Score=106.38 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=96.6
Q ss_pred CCCCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEecCCCeEEEeeccCCC--CCCCCCccChHHHHHHHHHHHH
Q 030321 6 SGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQGSRSLLMGSTKEWK--SRNSSPIVSADEASKALEELLP 83 (179)
Q Consensus 6 ~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~~g~~~~iG~t~e~~--~~~~~~~~~~~~~~~~~~~l~~ 83 (179)
+.++||+|+|||++.++.............+. ...|+.|.++. ++||+|.+.. +...+..++ .+.++.+++
T Consensus 219 g~~~~i~p~kG~~lv~~~~~~~~vi~~~~~~~--~~~~~vp~~~~-~liGtT~~~~~~~~~~~~~~t----~~~i~~Ll~ 291 (546)
T PRK11101 219 DLRIRMFPAKGSLLIMDHRINNHVINRCRKPA--DADILVPGDTI-SLIGTTSTRIDYDQIDDNRVT----AEEVDILLR 291 (546)
T ss_pred CCCCceeecceEEEEECCccCceeEeccCCCC--CCCEEEecCCE-EEEeeCCCCccCCCcCCCCCC----HHHHHHHHH
Confidence 33689999999999997532100000000111 22366666664 8999987652 112235667 778889999
Q ss_pred HHhccCCCCCCceeeeeeEEEeecCCCCCCC-------CCceeecc--CCCCCCcccCcEEEEeecCCcchhHHHHHHHH
Q 030321 84 KASAIYPGMKNWSFTGARAGLRALPPMTPNG-------SPPLLGCV--DNLVGTTHACKYWLFGGLGSRGLLYHGWFGKL 154 (179)
Q Consensus 84 ~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D-------~~PiiG~~--~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~ 154 (179)
.+.+++|.+.+.+|++.|+|+||.......+ .+++++.. ++.+ |++.++| |+ ++.++++|+.
T Consensus 292 ~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~------gli~i~G--Gk-ltt~r~~Ae~ 362 (546)
T PRK11101 292 EGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLD------GFITITG--GK-LMTYRLMAEW 362 (546)
T ss_pred HHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCC------CeEEEEC--Ch-HHHHHHHHHH
Confidence 9999999999999999999999984211001 24688854 3456 9999997 44 9999999999
Q ss_pred HHHHHHcC
Q 030321 155 VAQAVLAC 162 (179)
Q Consensus 155 lA~~i~~~ 162 (179)
+++++...
T Consensus 363 v~d~v~~~ 370 (546)
T PRK11101 363 ATDAVCRK 370 (546)
T ss_pred HHHHHHHh
Confidence 99998643
No 18
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.30 E-value=1.7e-11 Score=108.17 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=109.6
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccc-cCe--eEEecCCCeEEEeeccCCC--CCC----C---CCccChHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSIL-SDA--WLAVQGSRSLLMGSTKEWK--SRN----S---SPIVSADEAS 75 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~-~~~--y~~~~~g~~~~iG~t~e~~--~~~----~---~~~~~~~~~~ 75 (179)
++|+.|+..+.++++.-... .+.+. +.+. .++ |+....++ ++.|+-.... .++ . -.+++ +
T Consensus 253 kvPL~p~~H~YvvT~~IeGi-~s~t~--p~irD~DgSvylR~~~~g-il~GGyE~n~i~~egv~~~~~~~lqE~D----W 324 (856)
T KOG2844|consen 253 KVPLVPMHHAYVVTSRIEGV-SSLTR--PNIRDLDGSVYLRQQGDG-ILFGGYESNPIFTEGVPPGFATGLQEPD----W 324 (856)
T ss_pred cccceeeeeeEEEecccCCc-cCCCc--cceecccceEEEEecCCc-eeccccccCceeccccCCcccccccccc----H
Confidence 48999999999999875432 11111 1121 223 67766665 7777532211 000 0 11234 8
Q ss_pred HHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHH
Q 030321 76 KALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLV 155 (179)
Q Consensus 76 ~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~l 155 (179)
+..+..++.+.+..|.|+.+.|...-.|.-.+|| |.+|++|+.|+.. |+|+++||+|-|++++-.+||.|
T Consensus 325 d~F~~hlesai~r~P~l~k~~i~~~v~gpe~ftP----D~~p~mGe~p~~~------gy~v~~G~ns~G~~~~GG~Gk~l 394 (856)
T KOG2844|consen 325 DHFEPHLEAAIERVPVLEKAGIKSLVNGPETFTP----DHLPIMGESPEVR------GYWVACGFNSAGLSFGGGCGKYL 394 (856)
T ss_pred hhhHHHHHHHHHhCchhhhcCccceecCccccCC----ccccccCCCcccc------ceEEeecCCccceeccCchhHHH
Confidence 8889999999999999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred HHHHHcCCCCCCch
Q 030321 156 AQAVLACSENIIPS 169 (179)
Q Consensus 156 A~~i~~~~~~~~~~ 169 (179)
|++|..+.++.+--
T Consensus 395 a~wi~~g~p~~d~~ 408 (856)
T KOG2844|consen 395 AEWIIHGQPPLDVH 408 (856)
T ss_pred HHHhhcCCCCccch
Confidence 99998876654433
No 19
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.99 E-value=1.3e-08 Score=89.42 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=90.8
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCC-CCCCCccChHHHHHHHHHHHHHHh
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKS-RNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
.+++|.|||++.++........+...... ++. |+.|..++.+++|.|.+..+ ...+..++ .+.++.+++.+.
T Consensus 229 ~~v~p~kG~~lv~~~~~~~~~~~~~~~~d--gr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~----~~~i~~ll~~~~ 302 (502)
T PRK13369 229 RNVRLVKGSHIVVPKFWDGAQAYLFQNPD--KRVIFANPYEGDFTLIGTTDIAYEGDPEDVAAD----EEEIDYLLDAAN 302 (502)
T ss_pred cceEEeeEEEEEeCCccCCCceEEEeCCC--CeEEEEEEecCCEEEEEecCccccCCCCCCCCC----HHHHHHHHHHHH
Confidence 46999999999986432110001111111 222 67777433488898865421 22456677 777899999999
Q ss_pred ccCC-CCCCceeeeeeEEEeecCCCCCCCCCc---------eeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHH
Q 030321 87 AIYP-GMKNWSFTGARAGLRALPPMTPNGSPP---------LLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVA 156 (179)
Q Consensus 87 ~~~P-~l~~~~i~~~w~G~R~~tp~~~~D~~P---------iiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA 156 (179)
++|| .+....|++.|+|+||.++ |... +|-.... .-.+|++.++| -++|.++.+|+.++
T Consensus 303 ~~~~~~l~~~~i~~~waGlRPl~~----d~~~~~~~~sR~~~i~~~~~----~g~~gli~i~G---gk~Tt~r~~Ae~v~ 371 (502)
T PRK13369 303 RYFKEKLRREDVVHSFSGVRPLFD----DGAGNPSAVTRDYVFDLDAE----TGGAPLLSVFG---GKITTFRKLAEHAL 371 (502)
T ss_pred HhhCCCCCHhHEEEEeeceEEcCC----CCCCCcccCCcceEEeeccc----cCCCCeEEEeC---ChHhhHHHHHHHHH
Confidence 9997 8888999999999999997 5421 1111100 00137998887 47999999999999
Q ss_pred HHHHcC
Q 030321 157 QAVLAC 162 (179)
Q Consensus 157 ~~i~~~ 162 (179)
+.+...
T Consensus 372 d~~~~~ 377 (502)
T PRK13369 372 ERLKPF 377 (502)
T ss_pred HHHHHh
Confidence 998643
No 20
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.98 E-value=6.2e-09 Score=93.70 Aligned_cols=139 Identities=12% Similarity=-0.012 Sum_probs=93.6
Q ss_pred CceecceeEEEEeCCCCCCCCCCCCCCcc-ccCe-eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhc
Q 030321 10 PLRTCRGVIAHMQLPDFIGEYYPDHGPSI-LSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASA 87 (179)
Q Consensus 10 pl~p~rGq~~~~~~~~~~~~~~p~~~~~i-~~~~-y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (179)
+|.|.||+++.++..-.. .......+.. .++. |+.|.+|. +++|+|.+....+.+..++ .+.++.+++.+.+
T Consensus 310 ~I~p~kG~hlvl~~~~~~-~~~~~i~~~~~dgr~~~~~P~~g~-~liGtTd~~~~~~~~~~~t----~~ei~~Ll~~a~~ 383 (627)
T PLN02464 310 MICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPWLGR-TVAGTTDSKTPITMLPEPH----EDEIQFILDAISD 383 (627)
T ss_pred ceEeeeeEEEecccccCC-CCceEEecCCCCCCEEEEEecCCc-EEEecCCCCCCCCCCCCCC----HHHHHHHHHHHHH
Confidence 499999999988642100 0111112111 1333 67787775 9999887764344566666 6778999999999
Q ss_pred cCC-CCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCC--cccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 88 IYP-GMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGT--THACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 88 ~~P-~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~--~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
+|| .+....|+..|+|+||.++ |..|.++.....+.. ....|++-.+ ||. +|....+|+.+.|.+..
T Consensus 384 ~~~~~l~~~~v~~~waG~RPl~~----d~~~~~~~~~sr~~~i~~~~~gli~i~--GGk-~Tt~R~mAe~~~d~~~~ 453 (627)
T PLN02464 384 YLNVKVRRSDVLSAWSGIRPLAV----DPSAKSTESISRDHVVCEEPDGLVTIT--GGK-WTTYRSMAEDAVDAAIK 453 (627)
T ss_pred hhCCCCChhhEEEEEEeEEeecc----CCCCCcccccCCceEEEecCCCeEEEE--CCh-HHHHHHHHHHHHHHHHH
Confidence 998 6888899999999999999 987766654433300 0112444444 233 88889999999998865
No 21
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.97 E-value=2e-08 Score=88.37 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=90.8
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEec-CCCeEEEeeccCCC-CCCCCCccChHHHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQ-GSRSLLMGSTKEWK-SRNSSPIVSADEASKALEELLPK 84 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~-~g~~~~iG~t~e~~-~~~~~~~~~~~~~~~~~~~l~~~ 84 (179)
..+++|.||+++.++........+ ..+.-.+.. |+.|. ++. .++|.|.+.. ....+..++ .+.++.+++.
T Consensus 229 ~~~i~p~kG~~lvl~~~~~~~~~~--~~~~~dgr~v~~~P~~~g~-~liGttd~~~~~~~~~~~~~----~~~i~~Ll~~ 301 (508)
T PRK12266 229 PYGIRLVKGSHIVVPRLFDHDQAY--ILQNPDGRIVFAIPYEDDF-TLIGTTDVEYKGDPAKVAIS----EEEIDYLCKV 301 (508)
T ss_pred CcceeeeeeEEEEECCcCCCCcEE--EEeCCCCCEEEEEEeCCCe-EEEecCCCCCCCCCCCCCCC----HHHHHHHHHH
Confidence 358999999999986421110000 011100222 56677 554 8999886542 122355666 7778899999
Q ss_pred HhccCC-CCCCceeeeeeEEEeecCCCCCCCCCceeeccC-CCCCCcc----cCcEEEEeecCCcchhHHHHHHHHHHHH
Q 030321 85 ASAIYP-GMKNWSFTGARAGLRALPPMTPNGSPPLLGCVD-NLVGTTH----ACKYWLFGGLGSRGLLYHGWFGKLVAQA 158 (179)
Q Consensus 85 ~~~~~P-~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~-~~~~~~~----~~~l~~~~G~g~~G~~~ap~~g~~lA~~ 158 (179)
+.++|| .+....|++.|+|+||.++ |..|--+.+. ++.-... .+|++.++| | .+|.++.+|+.+++.
T Consensus 302 ~~~~~p~~l~~~~ii~~waG~RPl~~----d~~~~~~~~sr~~~i~~~~~~g~~gli~v~G--g-k~Tt~r~mAe~~~~~ 374 (508)
T PRK12266 302 VNRYFKKQLTPADVVWTYSGVRPLCD----DESDSAQAITRDYTLELDDENGGAPLLSVFG--G-KITTYRKLAEHALEK 374 (508)
T ss_pred HHHhcCCCCCHHHEEEEeeeeEeeCC----CCCCCcccCCcceEEEecccCCCCCeEEEEc--C-hHHHHHHHHHHHHHH
Confidence 999996 7888899999999999998 7655211111 0000000 138888886 3 499999999999999
Q ss_pred HHc
Q 030321 159 VLA 161 (179)
Q Consensus 159 i~~ 161 (179)
+..
T Consensus 375 ~~~ 377 (508)
T PRK12266 375 LAP 377 (508)
T ss_pred HHH
Confidence 864
No 22
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.96 E-value=1.8e-09 Score=87.52 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=94.4
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCcc--ccCe-eE----Eec-CCCeEEEeeccCCC--CCC-CCCccChHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSI--LSDA-WL----AVQ-GSRSLLMGSTKEWK--SRN-SSPIVSADEASK 76 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i--~~~~-y~----~~~-~g~~~~iG~t~e~~--~~~-~~~~~~~~~~~~ 76 (179)
..+|.-.|-.++++++.......+..++ .+ +++. .. .+. ++..+++|.+.... +++ .+..++ ++
T Consensus 214 ~~rIsglrihsI~l~~~e~~v~~~avf~-~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~n----pe 288 (380)
T KOG2852|consen 214 FTRISGLRIHSITLSPGEKPVGPSAVFC-ELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVN----PE 288 (380)
T ss_pred ccccceeeeeeEEecCCCCCCCCceEEE-EEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeC----HH
Confidence 4567888888888887653111111100 00 1111 11 122 43336677665442 111 223344 56
Q ss_pred HHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCC-CCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHH
Q 030321 77 ALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNG-SPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLV 155 (179)
Q Consensus 77 ~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D-~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~l 155 (179)
...++.+-+..+.+.+....+...-+.+-|.+. + +.|+||..+. ++|+++||+-+|++.||++|+.|
T Consensus 289 ki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn----~tg~PvIget~s--------g~yVaagHscWGItnaPaTG~~m 356 (380)
T KOG2852|consen 289 KIIELKEMADLVSSELTKSNVLDAQACFLPTSN----ITGIPVIGETKS--------GVYVAAGHSCWGITNAPATGKCM 356 (380)
T ss_pred HHHHHHHHHHHhhhhhccchhhhhhhccccccC----CCCCceEeecCC--------ceEEeecccccceecCcchhHHH
Confidence 667777777777777777888889999999998 7 9999999985 89999999999999999999999
Q ss_pred HHHHHcCC
Q 030321 156 AQAVLACS 163 (179)
Q Consensus 156 A~~i~~~~ 163 (179)
|++|+++.
T Consensus 357 AEllldge 364 (380)
T KOG2852|consen 357 AELLLDGE 364 (380)
T ss_pred HHHHhccc
Confidence 99999864
No 23
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.93 E-value=4.4e-09 Score=86.83 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHH
Q 030321 77 ALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVA 156 (179)
Q Consensus 77 ~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA 156 (179)
.++.......++.|.+++-..+.....++..|| |-.-+|+.+|+++ |+++++|++||||.++|.+||++|
T Consensus 303 ~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~Tp----D~~FviD~~P~~~------Nv~Vg~G~SGHGFK~aP~iGk~la 372 (399)
T KOG2820|consen 303 AIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTP----DANFVIDKHPQYD------NVFVGGGGSGHGFKFAPNIGKYLA 372 (399)
T ss_pred HHHHHHHHHHHhCccccCCCcceeeEEEeeCCC----CcCeeeecCCCcc------cEEEecCCCCcceeecchHHHHHH
Confidence 444444556678899988888889999999999 9999999999999 999999999999999999999999
Q ss_pred HHHHcCCCCCCchhhhhhh
Q 030321 157 QAVLACSENIIPSEVTSWK 175 (179)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~ 175 (179)
+++.+..+. --.+..+|+
T Consensus 373 e~~~~~~~e-~~~d~~~f~ 390 (399)
T KOG2820|consen 373 EMAMGDLSE-EWVDAWRFR 390 (399)
T ss_pred HHhhhcccc-cceehhhhh
Confidence 999986653 223444444
No 24
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.30 E-value=0.0091 Score=52.96 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=82.1
Q ss_pred CCceecceeEEEEeC--CCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCCC-CCCCccChHHHHHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQL--PDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSR-NSSPIVSADEASKALEELLPK 84 (179)
Q Consensus 9 lpl~p~rGq~~~~~~--~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~~-~~~~~~~~~~~~~~~~~l~~~ 84 (179)
..|+|.||-+++++. +.. ..+-..+.. -++. ++.|-.+. .+||.|...-+. ..+..++ ++-++.+++.
T Consensus 240 ~~vr~skGsHlVv~~~~~~~--~a~~~~~~~-d~r~~f~iP~~~~-~liGTTD~~~~~~~~~~~~~----~eEidyll~~ 311 (532)
T COG0578 240 IGVRPSKGSHLVVDKKFPIN--QAVINRCRK-DGRIVFAIPYEGK-TLIGTTDTDYDGDPEDPRIT----EEEIDYLLDA 311 (532)
T ss_pred ccceeccceEEEecccCCCC--ceEEeecCC-CCceEEEecCCCC-EEeeccccccCCCcccCCCC----HHHHHHHHHH
Confidence 359999999999987 211 000011110 0233 55677776 799998655322 3456677 5666777777
Q ss_pred Hh-ccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCC-CCCCccc--CcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 85 AS-AIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDN-LVGTTHA--CKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 85 ~~-~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~-~~~~~~~--~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
+. .+-|.+....|++.|+|+||.-. |.-+--..+.. +.-.... .|++..+ ||. +|.-=.+|+.+++.+.
T Consensus 312 ~~~~~~~~l~~~dI~~syaGVRPL~~----~~~~~~~~isR~~~l~~~~~~~glltv~--GGK-lTTyR~maE~a~d~v~ 384 (532)
T COG0578 312 VNRYLAPPLTREDILSTYAGVRPLVD----DGDDDTSAISRDHVLFDHAELAGLLTVA--GGK-LTTYRKMAEDALDAVC 384 (532)
T ss_pred HHhhhhccCChhheeeeeeeeeeccC----CCCCchhhccCceEEEecCCCCCeEEEe--cch-hHHhHHHHHHHHHHHH
Confidence 77 55667888899999999999877 55431111110 0000011 3777776 344 5555566777777765
Q ss_pred c
Q 030321 161 A 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 385 ~ 385 (532)
T COG0578 385 E 385 (532)
T ss_pred H
Confidence 3
No 25
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.45 E-value=0.012 Score=50.93 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=90.7
Q ss_pred CCceecceeEEEEeCCCC---CCCCCCCCCCccccCe-eEEec-CCCeEEEeeccCCCC--CCCCCccChHHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQLPDF---IGEYYPDHGPSILSDA-WLAVQ-GSRSLLMGSTKEWKS--RNSSPIVSADEASKALEEL 81 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~---~~~~~p~~~~~i~~~~-y~~~~-~g~~~~iG~t~e~~~--~~~~~~~~~~~~~~~~~~l 81 (179)
..+.|++||.++++.... ...-||...+..-+.+ .+.+. +|+ +++|.+..+.. ...+...+ .+....+
T Consensus 224 ~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~-~l~GP~A~~~~~~~k~~~~~~----~d~~d~v 298 (429)
T COG0579 224 FKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGS-LLFGPNALDSPKFLKGDRGVD----FDLLDSV 298 (429)
T ss_pred cccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCe-EEECCCcccchhhhccccccc----cchhhhH
Confidence 568899999999987321 1122332221110234 45555 776 99999876641 11123344 5555667
Q ss_pred HHHHhccCCCCC-CceeeeeeEEEeecCCCCCC-CCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHH
Q 030321 82 LPKASAIYPGMK-NWSFTGARAGLRALPPMTPN-GSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 82 ~~~~~~~~P~l~-~~~i~~~w~G~R~~tp~~~~-D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i 159 (179)
.......+|.+. .-.....++|.|++....+. +..-+|-...+.+ +.....|.-+.|++-+|..++.+.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~------~~~~~aGiRsq~lt~~~a~~~~~~~~~ 372 (429)
T COG0579 299 RKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDED------WFINVAGIRSQGLTADPAIAGGVLELL 372 (429)
T ss_pred HHhhhhhcccccccccchhhhheeccccccccccccceecccccCCC------CceeeeeEEccccccChhHhhhHhhhc
Confidence 777788898877 45677899999995321111 2222343343445 778888999999999999999999988
Q ss_pred HcC
Q 030321 160 LAC 162 (179)
Q Consensus 160 ~~~ 162 (179)
++.
T Consensus 373 t~~ 375 (429)
T COG0579 373 TER 375 (429)
T ss_pred ccc
Confidence 653
No 26
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=92.61 E-value=0.45 Score=40.02 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHH
Q 030321 76 KALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLV 155 (179)
Q Consensus 76 ~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~l 155 (179)
..+..-.+.+.+++|++.+..+.+..+|+|+..-.. |+.=+-+.+=+-.+.---+++....+--|.|.|.+-++|+++
T Consensus 370 ~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~--~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mI 447 (453)
T KOG2665|consen 370 KFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDG--DGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMI 447 (453)
T ss_pred hhhhhhhHHHHHhCccccccccccCcccccchhccC--CCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHH
Confidence 333344477889999999999999999999644300 221110111000001112488999999999999999999999
Q ss_pred HHHHH
Q 030321 156 AQAVL 160 (179)
Q Consensus 156 A~~i~ 160 (179)
|+.+.
T Consensus 448 a~k~~ 452 (453)
T KOG2665|consen 448 ADKFL 452 (453)
T ss_pred HHHhc
Confidence 99764
No 27
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.71 E-value=1.6 Score=39.12 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=40.1
Q ss_pred ecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCC---CCCCceeeeeeEEEeecCC
Q 030321 46 VQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYP---GMKNWSFTGARAGLRALPP 109 (179)
Q Consensus 46 ~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P---~l~~~~i~~~w~G~R~~tp 109 (179)
|=.|. .+.|.|........++.++ ++.++.+++.+..++- .+....|...|+|+||.-.
T Consensus 338 PWqg~-TIaGTTD~pt~v~~~P~Pt----E~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~ 399 (680)
T KOG0042|consen 338 PWQGK-TIAGTTDIPTSVTHSPTPT----EDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVR 399 (680)
T ss_pred ccCCc-eeeccCCCCCCCCCCCCCC----HHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCccccc
Confidence 33554 6678887665456677888 5666777776666653 2344567788999999776
No 28
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.10 E-value=3.7 Score=32.61 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeecc
Q 030321 43 WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCV 122 (179)
Q Consensus 43 y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~ 122 (179)
|+.|.+++++.+|-+.... . ...+ .++.++...+.+|.+.+.++.+.+.+..+... ...+..+
T Consensus 198 ~~~P~~~~~~~v~~~~~~~--~--~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~-- 260 (295)
T TIGR02032 198 WVFPKGDGTANVGVGSRSA--E--EGED-------LKKYLKDFLARRPELKDAETVEVIGAPIPIGR----PDDKTVR-- 260 (295)
T ss_pred EEEeCCCCeEEEeeeeccC--C--CCCC-------HHHHHHHHHHhCcccccCcEEeeeceeeccCC----CCCcccc--
Confidence 5566644447777654432 1 1112 22333334445787877878777777766543 1111111
Q ss_pred CCCCCCcccCcEEEEee-------cCCcchhHHHHHHHHHHHHH
Q 030321 123 DNLVGTTHACKYWLFGG-------LGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 123 ~~~~~~~~~~~l~~~~G-------~g~~G~~~ap~~g~~lA~~i 159 (179)
+ ++++..= +.|.|+.+|--.|.++|+.|
T Consensus 261 ---~------~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 261 ---G------NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred ---C------CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 1 4444332 68999999999999988753
No 29
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=85.46 E-value=5.1 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=25.3
Q ss_pred CcEEEEee--cCCcchhHHHHHHHHHHHHHHcC
Q 030321 132 CKYWLFGG--LGSRGLLYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 132 ~~l~~~~G--~g~~G~~~ap~~g~~lA~~i~~~ 162 (179)
+|||++.+ |-|.|+..+.+.|+.+|+.|+..
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 459 KGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 49998865 33568999999999999999754
No 30
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=76.74 E-value=1.4 Score=38.01 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=36.0
Q ss_pred eeEEEeecCCCCCCCCCceeecc--CCCCCCcccCcEEEE---------eecCCcchhHHHHHHHHHHHHHHc
Q 030321 100 ARAGLRALPPMTPNGSPPLLGCV--DNLVGTTHACKYWLF---------GGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 100 ~w~G~R~~tp~~~~D~~PiiG~~--~~~~~~~~~~~l~~~---------~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
.|.+...++. ...|..|.. |. .+.+|++++ .|+.|+|+.+|..+|+++|+.|..
T Consensus 269 ~~~~~~~~~~----~~ip~~g~~~~~~----~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~ 333 (428)
T PRK10157 269 AGGKLVEYSA----HVVPEAGINMLPE----LVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLS 333 (428)
T ss_pred CCCeEHHHHh----hHhhcCCcccCCc----eecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHH
Confidence 4445555555 555555422 21 112377766 789999999999999999998864
No 31
>PRK10015 oxidoreductase; Provisional
Probab=75.32 E-value=17 Score=31.47 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=41.4
Q ss_pred CCCceeeeeeEEEeecC-----CCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 92 MKNWSFTGARAGLRALP-----PMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 92 l~~~~i~~~w~G~R~~t-----p~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
+++.+..+.-+.+.|.. |..-.|+.-++|-. . +++...++.+.|+-+|-.+|++.|+.|..
T Consensus 268 ~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDA---A------g~v~p~~~~g~Gi~~A~~SG~~AAe~i~~ 333 (429)
T PRK10015 268 ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDA---A------GFCLNLGFTVRGMDLAIASAQAAATTVIA 333 (429)
T ss_pred hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecc---c------ccccccCccccchhHHHHHHHHHHHHHHH
Confidence 34556555556665522 22123777778755 2 66666688999999999999999998753
No 32
>PRK06185 hypothetical protein; Provisional
Probab=64.21 E-value=64 Score=27.13 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=61.7
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCe--eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA--WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~--y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
..+.++.+++++.++.+... .........+..++ ++.|..+ .+.++.+.... . ..... ....+.+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~llP~~~-~~~i~~~~~~~--~-~~~~~----~~~~~~~~~~~ 248 (407)
T PRK06185 178 EVREFGAPMDVLWFRLPREP-DDPESLMGRFGPGQGLIMIDRGD-YWQCGYVIPKG--G-YAALR----AAGLEAFRERV 248 (407)
T ss_pred CccccCCCceeEEEecCCCC-CCCcccceEecCCcEEEEEcCCC-eEEEEEEecCC--C-chhhh----hhhHHHHHHHH
Confidence 34556677777766543211 00000010111233 2334454 47777766542 1 11122 23345566666
Q ss_pred hccCCCCCC-ceeeeeeEEEe--e--------cCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHH
Q 030321 86 SAIYPGMKN-WSFTGARAGLR--A--------LPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKL 154 (179)
Q Consensus 86 ~~~~P~l~~-~~i~~~w~G~R--~--------~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~ 154 (179)
.+.+|.+.. ......|.... + ... |+..++|-. .....-++|.|+.+|-.-|..
T Consensus 249 ~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~rv~LvGDA-----------Ah~~~P~~GqG~nlgl~Da~~ 313 (407)
T PRK06185 249 AELAPELADRVAELKSWDDVKLLDVRVDRLRRWHR----PGLLCIGDA-----------AHAMSPVGGVGINLAIQDAVA 313 (407)
T ss_pred HHhCccHHHHHhhcCCccccEEEEEeccccccccC----CCeEEEecc-----------ccccCcccccchhHHHHHHHH
Confidence 666776421 11112222111 1 223 666666643 233345789999999977777
Q ss_pred HHHHHH
Q 030321 155 VAQAVL 160 (179)
Q Consensus 155 lA~~i~ 160 (179)
||+.+.
T Consensus 314 La~~l~ 319 (407)
T PRK06185 314 AANILA 319 (407)
T ss_pred HHHHHH
Confidence 777664
No 33
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=64.05 E-value=24 Score=30.86 Aligned_cols=31 Identities=19% Similarity=0.047 Sum_probs=25.2
Q ss_pred CcEEEEeecC--CcchhHHHHHHHHHHHHHHcC
Q 030321 132 CKYWLFGGLG--SRGLLYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 132 ~~l~~~~G~g--~~G~~~ap~~g~~lA~~i~~~ 162 (179)
+|||++.+.- |.|+..+-+.|+.+|+.|+++
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 459 DNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3999886543 468999989999999999864
No 34
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=61.29 E-value=21 Score=31.64 Aligned_cols=72 Identities=17% Similarity=0.041 Sum_probs=48.2
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCC----CCceeec-c-CCCCCCcccCcEE-EEeecCCcchhHHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNG----SPPLLGC-V-DNLVGTTHACKYW-LFGGLGSRGLLYHGWFGK 153 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D----~~PiiG~-~-~~~~~~~~~~~l~-~~~G~g~~G~~~ap~~g~ 153 (179)
.++.+.+++|.+....+....+|+|++-= ..| +.-+.|. + ..-+ +.+ +.+| -|.|.|.|..+++
T Consensus 371 ~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i--~~~~~~~g~L~~~~~~i~~~~------~~~~~l~~-~SPgat~s~~i~~ 441 (494)
T PRK05257 371 RFEALREFYPNAKPEDWELIVAGQRVQII--KKDPKKGGVLQFGTEVVSSAD------GSIAALLG-ASPGASTAVPIML 441 (494)
T ss_pred HHHHHHHhCCCCCHHHceEcCCceEeEEE--ccCCCCCCEEECCcEEEecCC------CeEEEEcC-CCchHHHHHHHHH
Confidence 34567789999875555667899999653 014 3334452 2 1223 555 4455 5999999999999
Q ss_pred HHHHHHHc
Q 030321 154 LVAQAVLA 161 (179)
Q Consensus 154 ~lA~~i~~ 161 (179)
.+++.+..
T Consensus 442 ~v~~~~~~ 449 (494)
T PRK05257 442 EVLEKCFP 449 (494)
T ss_pred HHHHHhCH
Confidence 99997754
No 35
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=60.84 E-value=40 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=25.2
Q ss_pred CcEEEEeec--CCcchhHHHHHHHHHHHHHHcC
Q 030321 132 CKYWLFGGL--GSRGLLYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 132 ~~l~~~~G~--g~~G~~~ap~~g~~lA~~i~~~ 162 (179)
+|||++.+. -|.|+..+.+.|+.+|+.|+.+
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 459 PGLYCVGDSCFPGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 499988644 3568999999999999999753
No 36
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=58.34 E-value=27 Score=31.08 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=46.9
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeecc-------CCCCCCcccCc-EEEEeecCCcchhHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCV-------DNLVGTTHACK-YWLFGGLGSRGLLYHGWFG 152 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~-------~~~~~~~~~~~-l~~~~G~g~~G~~~ap~~g 152 (179)
.++.+.+++|.+..-.+....+|+|++-= ..|+--+-+.+ ..-+ + +.+.+| -|.|.|.|..+|
T Consensus 372 ~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i--~~~~~~~~dfl~~g~~~i~~~~------~s~~~lna-~SPgATssl~ia 442 (497)
T PRK13339 372 RMNHLRTFYPEARAEDWRLYTAGKRVQVI--KDTPEHGKGFIQFGTEVVNSQD------HSVIALLG-ESPGASTSVSVA 442 (497)
T ss_pred HHHHHHHhCCCCCHHHeeEcCCceEEEEE--eCCCCccCCEEEecceeeecCC------CeEEEecC-CCcHHHhhHHHH
Confidence 34567789999876566677999999553 01443221221 1112 5 555555 599999999999
Q ss_pred HHHHHHHH
Q 030321 153 KLVAQAVL 160 (179)
Q Consensus 153 ~~lA~~i~ 160 (179)
+.|++.+.
T Consensus 443 ~~v~~~~f 450 (497)
T PRK13339 443 LEVLERNF 450 (497)
T ss_pred HHHHHHHh
Confidence 99999764
No 37
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=52.36 E-value=1.5e+02 Score=25.19 Aligned_cols=58 Identities=21% Similarity=0.121 Sum_probs=37.6
Q ss_pred ceeeeeeEEEeecCCCCCC----CCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 95 WSFTGARAGLRALPPMTPN----GSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 95 ~~i~~~w~G~R~~tp~~~~----D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
.++...-+|.-|...-.+. |+.-+||-.- | +...+.+.|+-.|-.+|+++|+.|.+..
T Consensus 246 ~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAA---------g--~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~ 307 (396)
T COG0644 246 GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAA---------G--FVNPLTGEGIRYAIKSGKLAAEAIAEAL 307 (396)
T ss_pred CceEEEeeeecccCCcCCCccccCCEEEEeccc---------c--CCCCcccCcHHHHHHHHHHHHHHHHHHH
Confidence 4666777777765521111 3333444331 3 4456789999999999999999997643
No 38
>PRK07233 hypothetical protein; Provisional
Probab=51.62 E-value=79 Score=26.61 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhccCCCCCCceeeeeeEE----Eeec-CCCCCCCCCceeeccCCCCCCcccCcEEEEee----cCCcch
Q 030321 75 SKALEELLPKASAIYPGMKNWSFTGARAG----LRAL-PPMTPNGSPPLLGCVDNLVGTTHACKYWLFGG----LGSRGL 145 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i~~~w~G----~R~~-tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G----~g~~G~ 145 (179)
++..+.+++.+.+++|.+...+++..++- -.+. ++ +....+..+. ...+|+|++.- ..+.++
T Consensus 343 ~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~----g~~~~~~~~~-----~~~~~l~~aG~~~~~~~~~~~ 413 (434)
T PRK07233 343 EELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEP----GYLDKIPPYD-----TPIEGLYLAGMSQIYPEDRSI 413 (434)
T ss_pred HHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccC----chhhcCCCcc-----cCcCCEEEeCCcccCCccCch
Confidence 56677788888999997654443332211 1121 12 2111111110 01139998852 234578
Q ss_pred hHHHHHHHHHHHHHHcC
Q 030321 146 LYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 146 ~~ap~~g~~lA~~i~~~ 162 (179)
--|-..|+.+|+.|+..
T Consensus 414 ~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 414 NGSVRAGRRVAREILED 430 (434)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 88999999999998754
No 39
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=48.70 E-value=55 Score=28.89 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=44.7
Q ss_pred HHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccC-------CCCCCcccCcEEE-EeecCCcchhHHHHHHH
Q 030321 82 LPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVD-------NLVGTTHACKYWL-FGGLGSRGLLYHGWFGK 153 (179)
Q Consensus 82 ~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~-------~~~~~~~~~~l~~-~~G~g~~G~~~ap~~g~ 153 (179)
++.+.+++|.+..-.+....+|+|++-= ..|..-.+|.+. .-+ +.++ .+| =|.|.|.|..+|+
T Consensus 366 ~~~~~~~~p~~~~~d~~~~~~GiR~Q~i--~~~~~~~~g~l~~g~~~i~~~~------~~~~~l~~-~SPgaTss~~i~~ 436 (483)
T TIGR01320 366 VSALREFYPEAIDSDWELIVAGQRVQVI--KKDPEKGGGVLEFGTTLIADAD------GSIAGLLG-ASPGASTAVSIML 436 (483)
T ss_pred HHHHHHhCCCCCHHHcEEccCceEEEEE--ecCCCCCcCEEecCCeEEECCC------CeEEEecC-CCchHHhhHHHHH
Confidence 4557789999876666678999999653 003111001111 112 4444 455 5999999999999
Q ss_pred HHHHHHH
Q 030321 154 LVAQAVL 160 (179)
Q Consensus 154 ~lA~~i~ 160 (179)
.+++...
T Consensus 437 ~v~~~~~ 443 (483)
T TIGR01320 437 DLLERCF 443 (483)
T ss_pred HHHHHHh
Confidence 9998664
No 40
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=41.34 E-value=1.5e+02 Score=25.98 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCCCCCCceeeee-----eEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcch----
Q 030321 75 SKALEELLPKASAIYPGMKNWSFTGA-----RAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGL---- 145 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i~~~-----w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~---- 145 (179)
++..+..++.+.++||...++++... .-.+..++| +..+. .|.. ....+|+|+|.-+-..|+
T Consensus 389 ~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~p----g~~~~---~P~~--~t~~~~l~lAGD~t~~~~pas~ 459 (474)
T TIGR02732 389 EEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAP----GMDPF---RPDQ--KTPISNFFLAGSYTQQDYIDSM 459 (474)
T ss_pred HHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCC----CCccc---CCCC--CCCCCCeEEeccccccCchHHH
Confidence 56667778888889997766655432 223333444 33211 1110 111349999975555544
Q ss_pred hHHHHHHHHHHHHH
Q 030321 146 LYHGWFGKLVAQAV 159 (179)
Q Consensus 146 ~~ap~~g~~lA~~i 159 (179)
--|-.+|+..|+.|
T Consensus 460 egAv~sG~~aA~~i 473 (474)
T TIGR02732 460 EGATLSGRQAAAAI 473 (474)
T ss_pred hHHHHHHHHHHHHh
Confidence 34667788888765
No 41
>PLN02697 lycopene epsilon cyclase
Probab=40.76 E-value=2.7e+02 Score=25.01 Aligned_cols=136 Identities=10% Similarity=0.041 Sum_probs=64.2
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCC-c---------c---ccCe-eEEecCCCeEEEeeccCCCCCCCCCccChHHH
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGP-S---------I---LSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEA 74 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~-~---------i---~~~~-y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~ 74 (179)
.+.+..+|+.+.++.+... ......+. . . .... |+.|.+.+++.|=.|.-.. ....+.
T Consensus 261 ~~~Q~a~Gi~ve~~~~~~d-~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~----~~~l~~--- 332 (529)
T PLN02697 261 VCVQTAYGVEVEVENNPYD-PSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS----KDAMPF--- 332 (529)
T ss_pred cccEEEEEEEEEecCCCCC-cchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc----CCCCCH---
Confidence 4578899999988753211 11111111 0 0 0123 6667655558884453110 011121
Q ss_pred HHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCC--CCCCCceeeccCCCCCCcccCcEEEE-eecC-CcchhHHHH
Q 030321 75 SKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMT--PNGSPPLLGCVDNLVGTTHACKYWLF-GGLG-SRGLLYHGW 150 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~--~~D~~PiiG~~~~~~~~~~~~~l~~~-~G~g-~~G~~~ap~ 150 (179)
....+.+.+++... .+...++++.=.|+-|+.-.. ..++...||-.- |++.- +|++ .+++..||.
T Consensus 333 ~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AA---------G~vhPsTGy~v~~~l~~A~~ 401 (529)
T PLN02697 333 DLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAA---------SMVHPATGYSVVRSLSEAPK 401 (529)
T ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCCCcccCCCeeEeehhh---------cCCCCchhhhHHHHHHhHHH
Confidence 22223444444443 355567777777777774200 012333333321 22221 2211 233377888
Q ss_pred HHHHHHHHHHcCC
Q 030321 151 FGKLVAQAVLACS 163 (179)
Q Consensus 151 ~g~~lA~~i~~~~ 163 (179)
+|+.+|+.+....
T Consensus 402 ~A~~ia~~l~~~~ 414 (529)
T PLN02697 402 YASVIARILKNVS 414 (529)
T ss_pred HHHHHHHHhhCCc
Confidence 8888888886543
No 42
>PLN02487 zeta-carotene desaturase
Probab=33.05 E-value=2.2e+02 Score=25.90 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCCCCCCceeee-----eeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCc----ch
Q 030321 75 SKALEELLPKASAIYPGMKNWSFTG-----ARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSR----GL 145 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i~~-----~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~----G~ 145 (179)
++.++...+.+.++||...+.++.. ..-.+...+| +...+ -|.. .+..+|+|+|.-+-.. .+
T Consensus 465 ~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~p----g~~~~---RP~~--~T~~~nl~LAGD~t~~~yPat~ 535 (569)
T PLN02487 465 DKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAP----GMDPF---RPDQ--KTPISNFFLAGSYTKQDYIDSM 535 (569)
T ss_pred HHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCC----Ccccc---CCCC--CCCCCCEEEeCcccccCCcchH
Confidence 5667778888889999876665542 2222223333 21100 0110 0112488888633333 34
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 030321 146 LYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 146 ~~ap~~g~~lA~~i~~~~ 163 (179)
=-|-.+|...|+.|+...
T Consensus 536 EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 536 EGATLSGRQAAAYICEAG 553 (569)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457788999999887543
No 43
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=32.30 E-value=1.8e+02 Score=24.25 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccCCCCCCcee----eeeeE-EEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchh---
Q 030321 75 SKALEELLPKASAIYPGMKNWSF----TGARA-GLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLL--- 146 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i----~~~w~-G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~--- 146 (179)
++..+.+++.+.++||.....++ +..|. +....++ +.....|.+. ... ++||++..+.+.|+.
T Consensus 333 e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~------~~l~~aGd~~~~~~~~~~ 403 (419)
T TIGR03467 333 EELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATP-GLNRLRPGAR--TPW------PNLFLAGDWTATGWPATM 403 (419)
T ss_pred HHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCC-cccccCCCCC--CCc------CCEEEecccccCCCcchH
Confidence 56677888888889985522222 11221 2222223 0001122211 112 389988766666543
Q ss_pred -HHHHHHHHHHHHHH
Q 030321 147 -YHGWFGKLVAQAVL 160 (179)
Q Consensus 147 -~ap~~g~~lA~~i~ 160 (179)
-|-.+|+.+|+.|+
T Consensus 404 egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 404 EGAVRSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHHHHHh
Confidence 47788888888775
No 44
>PRK10693 response regulator of RpoS; Provisional
Probab=29.49 E-value=1.1e+02 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=22.5
Q ss_pred cEEE--EeecCCcchhHHHHHHHHHHHHHHc
Q 030321 133 KYWL--FGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 133 ~l~~--~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
++|+ .+|||+||+..|-++..++.+++..
T Consensus 165 ~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~ 195 (303)
T PRK10693 165 AFYCLDVTRAGDNGVLAALLLRALFNGLLQE 195 (303)
T ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHHHH
Confidence 5665 4699999999999887777776654
No 45
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.49 E-value=35 Score=24.97 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.9
Q ss_pred cCcEEEEeecCCcch
Q 030321 131 ACKYWLFGGLGSRGL 145 (179)
Q Consensus 131 ~~~l~~~~G~g~~G~ 145 (179)
.+|++++-|+|++=+
T Consensus 106 ecGlilsDGyGa~il 120 (164)
T COG5321 106 ECGLILSDGYGAEIL 120 (164)
T ss_pred cCCeEeeccccHHHH
Confidence 469999999987644
No 46
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.76 E-value=72 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=16.2
Q ss_pred EEEeecCCcchhHHHHHHHHHHHH
Q 030321 135 WLFGGLGSRGLLYHGWFGKLVAQA 158 (179)
Q Consensus 135 ~~~~G~g~~G~~~ap~~g~~lA~~ 158 (179)
+++.||+|.| .+-|.+|+++|+.
T Consensus 36 ~iNLGfsG~~-~le~~~a~~ia~~ 58 (178)
T PF14606_consen 36 VINLGFSGNG-KLEPEVADLIAEI 58 (178)
T ss_dssp EEEEE-TCCC-S--HHHHHHHHHS
T ss_pred eEeeeecCcc-ccCHHHHHHHhcC
Confidence 6788999999 5677888888874
No 47
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=27.36 E-value=3.8e+02 Score=22.57 Aligned_cols=98 Identities=14% Similarity=-0.000 Sum_probs=49.3
Q ss_pred eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCC-------CCCC
Q 030321 43 WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMT-------PNGS 115 (179)
Q Consensus 43 y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~-------~~D~ 115 (179)
|+.|-..+++++..|+-.. .+..+. ....+.+.+.+.+. .+...+|++...|+-|++-.+ +.++
T Consensus 182 Y~lP~~~~~~lvE~T~~s~----~~~l~~---~~l~~~l~~~~~~~--g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~ 252 (370)
T TIGR01789 182 YVLPLGSHDLLIEDTYYAD----DPLLDR---NALSQRIDQYARAN--GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRI 252 (370)
T ss_pred EECcCCCCeEEEEEEeccC----CCCCCH---HHHHHHHHHHHHHh--CCCceEEEEeeeeEEeeecCCCcccccccCCc
Confidence 6555543348887664321 012221 22223344444443 455677888877999875410 0111
Q ss_pred CceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 116 PPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 116 ~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
...||-.- |.+..+ .|-|+..+-..++.||+.+.
T Consensus 253 v~~iG~AA---------g~~~P~--tGyg~~~a~~~a~~la~~~~ 286 (370)
T TIGR01789 253 VAIAGLRA---------GLTHPT--TGYSLPVAVENADALAAQPD 286 (370)
T ss_pred eeeeeccc---------cccccc--ccccHHHHHHHHHHHHhccC
Confidence 22233221 333222 56677777777777777664
No 48
>PLN02612 phytoene desaturase
Probab=27.19 E-value=2.2e+02 Score=25.67 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhccCCCCC-----Cceeeee-eEEE----eecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCc-
Q 030321 75 SKALEELLPKASAIYPGMK-----NWSFTGA-RAGL----RALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSR- 143 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~-----~~~i~~~-w~G~----R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~- 143 (179)
++..+.+++.+.++||... ..++... +++. ....|.. ....|... .| .+ |+|+|.=+-..
T Consensus 455 eei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~-~~~rp~~~-tP-i~------~l~lAGd~t~~~ 525 (567)
T PLN02612 455 EDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNC-EPCRPLQR-SP-IE------GFYLAGDYTKQK 525 (567)
T ss_pred HHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCC-cccCcccc-Cc-cC------CEEEeecceeCC
Confidence 6777888899999999752 2333331 1111 1112200 01122211 11 23 88887622222
Q ss_pred ---chhHHHHHHHHHHHHHHcCC
Q 030321 144 ---GLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 144 ---G~~~ap~~g~~lA~~i~~~~ 163 (179)
++--|-.+|+..|+.|+..-
T Consensus 526 ~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 526 YLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 57778889999999987543
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=24.07 E-value=2.9e+02 Score=23.19 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=18.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHc
Q 030321 140 LGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 140 ~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
++|.|+.+|-..|+++|+.|..
T Consensus 279 ~tG~GI~~A~~sg~~aa~~i~~ 300 (388)
T TIGR02023 279 ASGEGIYFAMKSGQMAAQAIAE 300 (388)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888764
No 50
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=23.95 E-value=4.3e+02 Score=22.12 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=34.9
Q ss_pred eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCC
Q 030321 43 WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPP 109 (179)
Q Consensus 43 y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp 109 (179)
|+.|-+.++.+|..|.=.. ....+. ....+.+.+.+.+ -.+...+|.+.-.|+-|++.
T Consensus 188 Y~lP~~~~~alvE~T~fs~----~~~~~~---~~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~~ 245 (374)
T PF05834_consen 188 YVLPFSEDRALVEETSFSP----RPALPE---EELKARLRRYLER--LGIDDYEILEEERGVIPMTT 245 (374)
T ss_pred EEEEcCCCeEEEEEEEEcC----CCCCCH---HHHHHHHHHHHHH--cCCCceeEEEeecceeeccc
Confidence 7767654458998774331 111221 2333445555555 24667889999999999953
No 51
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=23.37 E-value=1.2e+02 Score=21.34 Aligned_cols=31 Identities=3% Similarity=-0.231 Sum_probs=28.4
Q ss_pred cEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 133 KYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 133 ~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
+.+.-.+|-+.|=..+-++|.++++++.+.+
T Consensus 45 ~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~ 75 (121)
T TIGR03419 45 DIIKDVKFKTFGCGAAIASSSMATEMIKGKT 75 (121)
T ss_pred CEEEEEEEEEeccHHHHHHHHHHHHHHcCCC
Confidence 7888889999999999999999999998865
No 52
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=20.95 E-value=1.5e+02 Score=21.35 Aligned_cols=31 Identities=3% Similarity=-0.120 Sum_probs=28.0
Q ss_pred cEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 133 KYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 133 ~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
+.+...+|.+.|=..+-++|.++++++.|.+
T Consensus 49 ~~I~d~~f~~~GCais~Asas~~~e~i~Gk~ 79 (137)
T TIGR01994 49 DRIEDIAFEGEGCSISQASASMMTELIKGKT 79 (137)
T ss_pred CeEEEEEEEecccHHHHHHHHHHHHHHcCCC
Confidence 7888999999999999999999999987754
No 53
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=20.81 E-value=1.5e+02 Score=20.90 Aligned_cols=31 Identities=10% Similarity=-0.197 Sum_probs=28.2
Q ss_pred cEEEEeecCCcchhHHHHHHHHHHHHHHcCC
Q 030321 133 KYWLFGGLGSRGLLYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 133 ~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~ 163 (179)
+.+.-..|-+.|=..+-++|.++++++.|.+
T Consensus 49 ~~I~d~~f~~~GC~~s~Asas~~~e~i~Gkt 79 (124)
T TIGR01999 49 GIIEDAKFKTFGCGSAIASSSLATELIKGKS 79 (124)
T ss_pred CeEEEEEEEecCcHHHHHHHHHHHHHHcCCC
Confidence 6788889999999999999999999998865
No 54
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.53 E-value=87 Score=24.09 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=16.0
Q ss_pred eeEEEeecCCCCCCCCCceeeccC
Q 030321 100 ARAGLRALPPMTPNGSPPLLGCVD 123 (179)
Q Consensus 100 ~w~G~R~~tp~~~~D~~PiiG~~~ 123 (179)
+|+||+++.| | +|++-+.+
T Consensus 156 syvGFEpvrp----~-HP~~pp~~ 174 (191)
T KOG4387|consen 156 SYVGFEPVRP----D-HPVVPPRP 174 (191)
T ss_pred hcceeeecCC----C-CCCCCCcc
Confidence 6999999999 8 78776665
Done!