Query 030321
Match_columns 179
No_of_seqs 173 out of 1153
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyc_A D-arginine dehydrogenas 99.9 3.6E-23 1.2E-27 171.0 13.4 139 9-165 221-361 (381)
2 3pvc_A TRNA 5-methylaminomethy 99.9 3.7E-22 1.3E-26 178.8 13.9 146 8-167 477-654 (689)
3 3ps9_A TRNA 5-methylaminomethy 99.9 7.1E-22 2.4E-26 176.5 13.3 146 8-167 481-650 (676)
4 1y56_B Sarcosine oxidase; dehy 99.9 2.2E-21 7.6E-26 161.0 14.3 147 9-173 218-366 (382)
5 2gf3_A MSOX, monomeric sarcosi 99.9 1.1E-21 3.7E-26 162.9 11.3 154 3-173 210-375 (389)
6 3g3e_A D-amino-acid oxidase; F 99.9 4.9E-21 1.7E-25 157.7 13.9 137 5-162 189-333 (351)
7 3axb_A Putative oxidoreductase 99.9 1.6E-21 5.5E-26 165.6 10.3 147 3-165 259-421 (448)
8 1ryi_A Glycine oxidase; flavop 99.9 4.7E-21 1.6E-25 158.9 12.4 147 3-172 224-373 (382)
9 1c0p_A D-amino acid oxidase; a 99.8 1.1E-20 3.8E-25 156.2 13.8 141 8-162 193-357 (363)
10 2uzz_A N-methyl-L-tryptophan o 99.8 1.1E-20 3.7E-25 156.2 9.8 153 5-174 207-369 (372)
11 2gag_B Heterotetrameric sarcos 99.8 1E-19 3.6E-24 151.7 12.5 147 5-174 237-387 (405)
12 2oln_A NIKD protein; flavoprot 99.8 3.7E-19 1.2E-23 148.6 14.6 153 3-173 213-385 (397)
13 3dme_A Conserved exported prot 99.8 1.4E-19 4.9E-24 148.3 10.5 134 9-160 225-368 (369)
14 3dje_A Fructosyl amine: oxygen 99.8 8.9E-19 3.1E-23 148.1 9.5 142 9-165 229-387 (438)
15 3c4n_A Uncharacterized protein 99.8 1.3E-18 4.4E-23 146.5 9.1 137 4-164 243-399 (405)
16 1pj5_A N,N-dimethylglycine oxi 99.7 7.5E-17 2.6E-21 147.0 12.8 149 5-171 214-388 (830)
17 2qcu_A Aerobic glycerol-3-phos 99.3 5.7E-12 1.9E-16 108.8 11.8 141 9-162 224-372 (501)
18 2rgh_A Alpha-glycerophosphate 99.2 1.1E-10 3.7E-15 102.6 12.7 132 9-161 264-410 (571)
19 3da1_A Glycerol-3-phosphate de 99.0 1.9E-09 6.7E-14 94.4 10.7 131 9-160 245-389 (561)
20 3cgv_A Geranylgeranyl reductas 92.4 0.33 1.1E-05 39.2 6.9 99 43-161 212-313 (397)
21 3nks_A Protoporphyrinogen oxid 87.6 0.6 2.1E-05 38.8 4.7 84 75-163 387-474 (477)
22 3oz2_A Digeranylgeranylglycero 87.4 3 0.0001 33.0 8.7 68 78-160 238-312 (397)
23 3i6d_A Protoporphyrinogen oxid 85.7 1.6 5.3E-05 36.0 6.2 77 75-161 381-466 (470)
24 2weu_A Tryptophan 5-halogenase 82.6 3.2 0.00011 34.9 6.9 94 43-161 281-374 (511)
25 3nix_A Flavoprotein/dehydrogen 76.9 1.1 3.9E-05 36.4 2.2 37 114-161 288-324 (421)
26 3atr_A Conserved archaeal prot 73.2 15 0.00052 30.2 8.3 57 88-160 253-317 (453)
27 3lov_A Protoporphyrinogen oxid 72.4 3.4 0.00012 34.3 4.0 79 75-163 378-465 (475)
28 3ka7_A Oxidoreductase; structu 65.3 17 0.00059 29.2 6.9 76 76-161 344-425 (425)
29 4dgk_A Phytoene dehydrogenase; 62.0 14 0.00047 30.7 5.8 30 132-161 458-489 (501)
30 2ivd_A PPO, PPOX, protoporphyr 58.7 5 0.00017 33.2 2.4 78 75-162 387-472 (478)
31 3nlc_A Uncharacterized protein 52.9 61 0.0021 27.9 8.4 79 73-161 458-540 (549)
32 2gmh_A Electron transfer flavo 47.0 28 0.00096 30.0 5.4 51 100-161 326-383 (584)
33 2e4g_A Tryptophan halogenase; 38.4 33 0.0011 29.1 4.4 60 87-161 337-397 (550)
34 3nrn_A Uncharacterized protein 35.3 71 0.0024 25.6 5.8 71 77-159 329-403 (421)
35 3i3l_A Alkylhalidase CMLS; fla 33.0 22 0.00076 30.8 2.5 53 94-161 291-344 (591)
36 3kkj_A Amine oxidase, flavin-c 32.4 1.3E+02 0.0044 21.0 8.6 29 133-161 296-325 (336)
37 2aqj_A Tryptophan halogenase, 30.5 73 0.0025 26.8 5.3 55 92-161 311-366 (538)
No 1
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.90 E-value=3.6e-23 Score=170.96 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=106.9
Q ss_pred CCceecceeEEEEeCCCCC-CCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHh
Q 030321 9 LPLRTCRGVIAHMQLPDFI-GEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~-~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
+|+.|+|||++.++.+... ...+|.... ...+ |+.|..+ ++++|++.+......+..++ ...++++++++.
T Consensus 221 ~~~~p~rg~~~~~~~~~~~~~~~~p~~~~--~~~~~y~~p~~g-~~~ig~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 293 (381)
T 3nyc_A 221 LGLQPKRRSAFIFAPPPGIDCHDWPMLVS--LDESFYLKPDAG-MLLGSPANADPVEAHDVQPE----QLDIATGMYLIE 293 (381)
T ss_dssp CCCEEEEEEEEEECCCTTCCCTTCCEEEE--TTSSCEEEEETT-EEEEECCCCEECCSSCCCCC----HHHHHHHHHHHH
T ss_pred CceeeeEEEEEEECCCcCCCcCccceEEe--CCCCEEEEeCCC-cEEEeCCcCCCCCcccCCCC----hHHHHHHHHHHH
Confidence 6999999999999865421 111222110 1223 8888776 49999988753223444555 445567777765
Q ss_pred ccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcCCCC
Q 030321 87 AIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLACSEN 165 (179)
Q Consensus 87 ~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~~~ 165 (179)
+ +|.+.+.++.+.|+|+|++|+ |++|+||++|+.+ |+|+++||+|+||++||++|++||++|.+++.+
T Consensus 294 ~-~~~l~~~~~~~~w~G~r~~t~----D~~p~ig~~~~~~------~l~~a~G~~g~G~~~ap~~g~~la~~i~g~~~~ 361 (381)
T 3nyc_A 294 E-ATTLTIRRPEHTWAGLRSFVA----DGDLVAGYAANAE------GFFWVAAQGGYGIQTSAAMGEASAALIRHQPLP 361 (381)
T ss_dssp H-HBSCCCCCCSEEEEEEEEECT----TSCCEEEECTTST------TEEEEECCTTCTTTTHHHHHHHHHHHHTTCCCC
T ss_pred h-cCCCcccceeeeeEEccccCC----CCCceecCCCCCC------CeEEEEcCCChhHhhCHHHHHHHHHHHhCCCCC
Confidence 5 577888899999999999999 9999999999888 999999999999999999999999999998766
No 2
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.88 E-value=3.7e-22 Score=178.80 Aligned_cols=146 Identities=19% Similarity=0.285 Sum_probs=112.2
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEecC--CCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQG--SRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~~--g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
.+|++|+|||+++++..... ..++. .+..++|+.|.. ++++++|+|++.. +.+..++ .+..+++++++
T Consensus 477 ~lpl~p~rGq~~~~~~~~~~-~~l~~---v~~~~~Yl~P~~~~~g~~~iGat~~~~--~~d~~~~----~~~~~~ll~~l 546 (689)
T 3pvc_A 477 HLPLSAVRGQVSHIPTTPVL-SQLQQ---VLCYDGYLTPVNPANQHHCIGASYQRG--DIATDFR----LTEQQENRERL 546 (689)
T ss_dssp TSCCEEEEEEEEEEECCTTG-GGCCS---EEESSSEECCCBTTTTEEEEECCCEET--BCCCCCC----HHHHHHHHHHH
T ss_pred CCccccccCcEEEECCCCcc-ccCCe---eEeCCceEccccCCCCeEEEEEeccCC--CCCCCCC----HHHHHHHHHHH
Confidence 47999999999999865321 11221 122446888864 4459999999874 4455666 56677888999
Q ss_pred hccCCCCC-----CceeeeeeEEEeecCCCCCCCCCceeeccCCC-----------------------C--CCcccCcEE
Q 030321 86 SAIYPGMK-----NWSFTGARAGLRALPPMTPNGSPPLLGCVDNL-----------------------V--GTTHACKYW 135 (179)
Q Consensus 86 ~~~~P~l~-----~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~-----------------------~--~~~~~~~l~ 135 (179)
.+++|.+. +.++.+.|+|+|++|+ |++|+||++|+. . ..+..+|+|
T Consensus 547 ~~~~P~l~~~~~~~~~~~~~w~G~R~~t~----D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 622 (689)
T 3pvc_A 547 LRCLPQVSWPQQVDVSDNQARCGVRCAIR----DHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVWPELF 622 (689)
T ss_dssp HHHCTTCSGGGGCCCTTCCEEEEEEEECT----TSCCEEEEEECHHHHHHHSTTHHHHC--------CCCCCCCEEEEEE
T ss_pred HHhCCCccccccccccccceeEEEeeecC----CCCcccCcCCCHHHHHHHHHhhhccccccccccccccccCCCCCChH
Confidence 99999886 3467899999999999 999999999861 0 001234999
Q ss_pred EEeecCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 030321 136 LFGGLGSRGLLYHGWFGKLVAQAVLACSENII 167 (179)
Q Consensus 136 ~~~G~g~~G~~~ap~~g~~lA~~i~~~~~~~~ 167 (179)
+++||||+||++||++|++||++|++++.++.
T Consensus 623 ~a~G~g~~Gl~~ap~~ae~lA~~i~g~~~p~~ 654 (689)
T 3pvc_A 623 MVGGLGSRGLCSAPLVAEILAAQMFGEPLPLD 654 (689)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HhhcccccHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999998876654
No 3
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.87 E-value=7.1e-22 Score=176.47 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=111.4
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEecC--CCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHH
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQG--SRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~~--g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
.+|++|+|||+++++..... ...+. .+..++|+.|.. ++++++|+|++.. +.+..++ .+..+++++++
T Consensus 481 ~lpl~p~rGq~~~~~~~~~~-~~l~~---~l~~~~Yl~P~~~~~g~~~iG~t~~~~--~~d~~~~----~~~~~~~l~~l 550 (676)
T 3ps9_A 481 TLPVYSVAGQVSHIPTTPEL-AELKQ---VLCYDGYLTPQNPANQHHCIGASYHRG--SEDTAYS----EDDQQQNRQRL 550 (676)
T ss_dssp TCSCEEEEEEEEEEECCTTG-GGCCS---EEESSSEECCCBTTTTEEEEECCCEET--CCCCCCC----HHHHHHHHHHH
T ss_pred CCcceeecCEEEEECCCccc-ccCCc---eeECCeeeccccCCCCeEEEeeccCCC--CCCCCCC----HHHHHHHHHHH
Confidence 47999999999999865321 11121 122446888864 3459999999874 4556666 66677888889
Q ss_pred hccCCCCC-----CceeeeeeEEEeecCCCCCCCCCceeeccCCCC-----------------CCcccCcEEEEeecCCc
Q 030321 86 SAIYPGMK-----NWSFTGARAGLRALPPMTPNGSPPLLGCVDNLV-----------------GTTHACKYWLFGGLGSR 143 (179)
Q Consensus 86 ~~~~P~l~-----~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~-----------------~~~~~~~l~~~~G~g~~ 143 (179)
.+++|.+. +.++.+.|+|+|++|+ |++|+||++|+.+ ..+..+|+|+++||||+
T Consensus 551 ~~~~P~l~~~~~~d~~~~~~~~G~R~~t~----D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~~~l~~a~G~g~~ 626 (676)
T 3ps9_A 551 IDCFPQAQWAKEVDVSDKEARCGVRCATR----DHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSR 626 (676)
T ss_dssp HHHSTTCHHHHTCCCTTCCEEEEEEEECT----TCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCCEEEEEEEEECCTTC
T ss_pred HHhCCCccccccCcccccceEEEEeCccC----CcCCccCcCCChHHHHHHHHhhhccccccccCCCCCCEeeeeccccc
Confidence 99999875 3457899999999999 9999999998610 00113499999999999
Q ss_pred chhHHHHHHHHHHHHHHcCCCCCC
Q 030321 144 GLLYHGWFGKLVAQAVLACSENII 167 (179)
Q Consensus 144 G~~~ap~~g~~lA~~i~~~~~~~~ 167 (179)
||++||++|++||++|.+++.+..
T Consensus 627 Gl~~Ap~~ae~lA~~i~g~~~pl~ 650 (676)
T 3ps9_A 627 GLCSAPLCAEILAAQMSDEPIPMD 650 (676)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSB
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999998876544
No 4
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.2e-21 Score=160.98 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCccc-cCeeEEecCCCeEEEee-ccCCCCCCCCCccChHHHHHHHHHHHHHHh
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPSIL-SDAWLAVQGSRSLLMGS-TKEWKSRNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~-~~~y~~~~~g~~~~iG~-t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
+|+.|.|||++.+++.... ...+..... . ...|+.|..++ +++|+ +.+.. .+++..++ .+..+++++.+.
T Consensus 218 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~-~~~~~y~~p~~~g-~~iG~~~~~~~-~~~~~~~~----~~~~~~l~~~~~ 289 (382)
T 1y56_B 218 IPIEPYKHQAVITQPIKRG-TINPMVISF-KYGHAYLTQTFHG-GIIGGIGYEIG-PTYDLTPT----YEFLREVSYYFT 289 (382)
T ss_dssp CCCEEEEEEEEEECCCSTT-SSCSEEEES-TTTTEEEECCSSS-CCEEECSCCBS-SCCCCCCC----HHHHHHHHHHHH
T ss_pred cCCCeeEeEEEEEccCCcc-cCCCeEEec-CCCeEEEEEeCCe-EEEecCCCCCC-CCCCCCCC----HHHHHHHHHHHH
Confidence 8999999999999764311 011111100 0 12388887655 88995 43321 34455566 677888999999
Q ss_pred ccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHcCCCCC
Q 030321 87 AIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLACSENI 166 (179)
Q Consensus 87 ~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~~~~~~ 166 (179)
+++|.+.+.++.+.|+|+|++|+ |++|+||++|+.+ |+|+++||+|+||++||++|+++|++|.++....
T Consensus 290 ~~~p~l~~~~~~~~~~g~r~~t~----d~~p~ig~~~~~~------~~~~~~G~~g~G~~~a~~~g~~la~~i~~~~~~~ 359 (382)
T 1y56_B 290 KIIPALKNLLILRTWAGYYAKTP----DSNPAIGRIEELN------DYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKL 359 (382)
T ss_dssp HHCGGGGGSEEEEEEEEEEEECT----TSCCEEEEESSSB------TEEEEECCTTCHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HhCCCcCCCCceEEEEeccccCC----CCCcEeccCCCCC------CEEEEEecCcchHhhhHHHHHHHHHHHhCCCCcC
Confidence 99999998999999999999999 9999999999888 9999999999999999999999999999987655
Q ss_pred Cchhhhh
Q 030321 167 IPSEVTS 173 (179)
Q Consensus 167 ~~~~~~~ 173 (179)
+...|+.
T Consensus 360 ~~~~~~~ 366 (382)
T 1y56_B 360 PVEWYDP 366 (382)
T ss_dssp CGGGGCG
T ss_pred cccccCH
Confidence 5555543
No 5
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.86 E-value=1.1e-21 Score=162.88 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=113.9
Q ss_pred ccCCCCCCceecceeEEEEeCCCC-C--CCCCCCCCCcccc--CeeEEec-CC-CeEEEeeccCC---CCCCCCCcc--C
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDF-I--GEYYPDHGPSILS--DAWLAVQ-GS-RSLLMGSTKEW---KSRNSSPIV--S 70 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~-~--~~~~p~~~~~i~~--~~y~~~~-~g-~~~~iG~t~e~---~~~~~~~~~--~ 70 (179)
+.++.++|+.|+|||++++++... . ...+|..... .. ..|+.|. ++ . +++|++... ...+.+..+ +
T Consensus 210 ~~~g~~~pl~~~rg~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~y~~p~~~g~~-~~iG~~~~~~~~~~~~~~~~~~~~ 287 (389)
T 2gf3_A 210 SKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVE-VPNGIYYGFPSFGGCG-LKLGYHTFGQKIDPDTINREFGVY 287 (389)
T ss_dssp GGGTEECCCEEEEEEEEEECCCHHHHBGGGTCCEEEEE-ETTEEEEEECBSTTCC-EEEEESSCCEECCTTTCCCCTTSS
T ss_pred hhhccCCceEEEEEEEEEEecCcccccccccCCEEEEe-CCCCcEEEcCCCCCCc-EEEEEcCCCCccCcccccCccCCC
Confidence 444445899999999999986531 0 0112321100 01 2377776 44 5 999987521 112234444 5
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHH
Q 030321 71 ADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGW 150 (179)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~ 150 (179)
.+..+++++.+.++||.+.+ ++.+.|+|+|++|| |++|+||++|+.+ |+|+++||+|+||++||+
T Consensus 288 ----~~~~~~l~~~~~~~~P~l~~-~~~~~w~g~r~~t~----D~~p~ig~~~~~~------~l~~a~G~~g~G~~~ap~ 352 (389)
T 2gf3_A 288 ----PEDESNLRAFLEEYMPGANG-ELKRGAVCMYTKTL----DEHFIIDLHPEHS------NVVIAAGFSGHGFKFSSG 352 (389)
T ss_dssp ----HHHHHHHHHHHHHHCGGGCS-CEEEEEEEEEEECT----TSCCEEEEETTEE------EEEEEECCTTCCGGGHHH
T ss_pred ----HHHHHHHHHHHHHhCCCCCC-CceEEEEEEeccCC----CCCeEEccCCCCC------CEEEEECCccccccccHH
Confidence 56678999999999999887 88999999999999 9999999999888 999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhhh
Q 030321 151 FGKLVAQAVLACSENIIPSEVTS 173 (179)
Q Consensus 151 ~g~~lA~~i~~~~~~~~~~~~~~ 173 (179)
+|+++|++|.++..+.+...|+.
T Consensus 353 ~g~~la~~i~~~~~~~~~~~~~~ 375 (389)
T 2gf3_A 353 VGEVLSQLALTGKTEHDISIFSI 375 (389)
T ss_dssp HHHHHHHHHHHSCCSSCCGGGCT
T ss_pred HHHHHHHHHcCCCCCCCcccccc
Confidence 99999999999876655455543
No 6
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=99.86 E-value=4.9e-21 Score=157.72 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=108.0
Q ss_pred CCCCCCceecceeEEEEeCCCCCCCCCCCCCC----ccccCeeEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHH
Q 030321 5 LSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGP----SILSDAWLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEE 80 (179)
Q Consensus 5 l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~----~i~~~~y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~ 80 (179)
+..++|++|+|||++.++++.. ..+.... ......|+.|..++ +++|++++.. +.+..++ .+..+.
T Consensus 189 l~~~~~l~p~rg~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~p~~~~-~~iGg~~~~~--~~~~~~~----~~~~~~ 258 (351)
T 3g3e_A 189 LQRDPLLQPGRGQIMKVDAPWM---KHFILTHDPERGIYNSPYIIPGTQT-VTLGGIFQLG--NWSELNN----IQDHNT 258 (351)
T ss_dssp TSCCTTCEEEEEEEEEEECTTC---CSEEEECCTTTCTTCSCEEEECSSC-EEEECCCEET--CCCCSCC----HHHHHH
T ss_pred hcCCCceeecCCcEEEEeCCCc---ceEEEeccccCCCCceeEEEeCCCc-EEEeeeeecC--CCCCCCC----HHHHHH
Confidence 4445899999999999987531 1111000 00012388887555 9999998873 4566666 677889
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCce----eeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPL----LGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVA 156 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~Pi----iG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA 156 (179)
+++++.++||.+.+.++.+.|+|+|++|| | +|+ ||+.|+.+ |+|+++||+|+||++||++|+++|
T Consensus 259 l~~~~~~~~P~l~~~~i~~~w~G~r~~t~----D-~p~~~~~ig~~~~~~------~~~~~~G~~g~G~~~ap~~g~~la 327 (351)
T 3g3e_A 259 IWEGCCRLEPTLKNARIIGERTGFRPVRP----Q-IRLEREQLRTGPSNT------EVIHNYGHGGYGLTIHWGCALEAA 327 (351)
T ss_dssp HHHHHHHHCGGGGGCEEEEEEEEEEEECS----S-CEEEEEEECCSSSCE------EEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccCCcEeeeeEeeCCCCC----C-ccceeeeccCCCCCC------eEEEEeCCCcchHhhhHHHHHHHH
Confidence 99999999999999999999999999999 9 985 66667677 999999999999999999999999
Q ss_pred HHHHcC
Q 030321 157 QAVLAC 162 (179)
Q Consensus 157 ~~i~~~ 162 (179)
++|.+.
T Consensus 328 ~li~~~ 333 (351)
T 3g3e_A 328 KLFGRI 333 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999763
No 7
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.85 E-value=1.6e-21 Score=165.61 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=112.0
Q ss_pred ccCCCCCCceecceeEEEEeCCCC-CCC-----CC-C-CCCCccc--cCeeEEecCC-CeEEEeeccCCC-CCCCCC--c
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDF-IGE-----YY-P-DHGPSIL--SDAWLAVQGS-RSLLMGSTKEWK-SRNSSP--I 68 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~-~~~-----~~-p-~~~~~i~--~~~y~~~~~g-~~~~iG~t~e~~-~~~~~~--~ 68 (179)
+.++.++|+.|+|||++.++.... ... .+ + ...+.+. ...|+.|..+ +++++|++.+.. ..+++. .
T Consensus 259 ~~~g~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~~~~~~~~~~~ 338 (448)
T 3axb_A 259 NPLGIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQ 338 (448)
T ss_dssp GGGTCCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTTSCBCCCSSCC
T ss_pred HHcCCCCcccccceEEEEeCCcccccccccccccccccCCCceEEcCCceEEeecCCCCeEEEecCCcccCCcccccccC
Confidence 455567899999999999987532 100 00 0 0011121 2238887633 359999998742 123344 5
Q ss_pred cChHHHHHH-HHHHHHHHhccCCCCCCceeeeeeEEEeec-CCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchh
Q 030321 69 VSADEASKA-LEELLPKASAIYPGMKNWSFTGARAGLRAL-PPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLL 146 (179)
Q Consensus 69 ~~~~~~~~~-~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~-tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~ 146 (179)
++ .+. .+.+++.+.++||.+++.++.+.|+|+|++ |+ |++|+||+++ + |+|+++||+|+||+
T Consensus 339 ~~----~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~----d~~p~ig~~~--~------~l~~a~G~~g~G~~ 402 (448)
T 3axb_A 339 PE----EHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISFD----ANPVVFEPWE--S------GIVVAAGTSGSGIM 402 (448)
T ss_dssp CC----HHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEETT----SSCEEECGGG--C------SEEEEECCTTCCGG
T ss_pred CC----hHHHHHHHHHHHHHhCcCcccCCcccceEEEeccccC----CCCcEeeecC--C------CEEEEECCCchhHh
Confidence 55 566 788999999999999988999999999999 99 9999999997 6 99999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 030321 147 YHGWFGKLVAQAVLACSEN 165 (179)
Q Consensus 147 ~ap~~g~~lA~~i~~~~~~ 165 (179)
+||++|+++|++|.++..+
T Consensus 403 ~ap~~g~~la~~i~~~~~~ 421 (448)
T 3axb_A 403 KSDSIGRVAAAVALGMESV 421 (448)
T ss_dssp GHHHHHHHHHHHHTTCSEE
T ss_pred HhHHHHHHHHHHHcCCCcc
Confidence 9999999999999988755
No 8
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.85 E-value=4.7e-21 Score=158.85 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=116.2
Q ss_pred ccCCCCCCceecceeEEEEeCCCCCCCCCCCCCCcccc-CeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHH
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILS-DAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEE 80 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~-~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~ 80 (179)
+.++..+|+.|+|||++.++..... .+. .+.. ..|+.|. ++ ++++|++.+.. +++..++ .+..+.
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~---~~~---~~~~~~~~~~p~~~g-~~~vG~~~~~~--~~~~~~~----~~~~~~ 290 (382)
T 1ryi_A 224 KQLGLNNAFLPVKGECLSVWNDDIP---LTK---TLYHDHCYIVPRKSG-RLVVGATMKPG--DWSETPD----LGGLES 290 (382)
T ss_dssp HHTTCCCCCEEEEEEEEEEECCSSC---CCS---EEEETTEEEEECTTS-EEEEECCCEET--CCCCSCC----HHHHHH
T ss_pred HhcCCCCceeccceEEEEECCCCCC---ccc---eEEcCCEEEEEcCCC-eEEEeeccccc--CCCCCCC----HHHHHH
Confidence 3445567999999999999875321 111 1222 3488776 55 59999987763 4455566 667788
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
+++.+.+++|.+++.++.+.|+|+|++++ |++|+||++|+.+ |+|+++||+|+|+++||++|+++|++|.
T Consensus 291 l~~~~~~~~p~l~~~~~~~~w~g~~~~t~----d~~p~ig~~~~~~------~l~~~~G~~g~G~~~a~~~g~~la~~i~ 360 (382)
T 1ryi_A 291 VMKKAKTMLPAIQNMKVDRFWAGLRPGTK----DGKPYIGRHPEDS------RILFAAGHFRNGILLAPATGALISDLIM 360 (382)
T ss_dssp HHHHHHHHCGGGGGSEEEEEEEEEEEECS----SSCCEEEEETTEE------EEEEEECCSSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCCceeeEEEEecccCC----CCCcEeccCCCcC------CEEEEEcCCcchHHHhHHHHHHHHHHHh
Confidence 99999999999988899999999999999 9999999998877 9999999999999999999999999999
Q ss_pred cCCCCCCc-hhhh
Q 030321 161 ACSENIIP-SEVT 172 (179)
Q Consensus 161 ~~~~~~~~-~~~~ 172 (179)
++..+.+. ..|+
T Consensus 361 ~~~~~~~~~~~~~ 373 (382)
T 1ryi_A 361 NKEVNQDWLHAFR 373 (382)
T ss_dssp TCCCCHHHHHHTC
T ss_pred CCCCCchhhcCCC
Confidence 88765433 3443
No 9
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=99.85 E-value=1.1e-20 Score=156.24 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=105.6
Q ss_pred CCCceecceeEEEEeCCCCCCCCCCCCCCccccCeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHh
Q 030321 8 KLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 8 ~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
++|++|+|||++.++.+... ...+..... ...|+.|. ++ ++++|+|++.. +.+..++ .+..+++++++.
T Consensus 193 ~~~~~p~rg~~~~~~~~~~~-~~~~~~~~~--~~~y~~p~~~g-~~~iG~t~~~~--~~~~~~~----~~~~~~l~~~~~ 262 (363)
T 1c0p_A 193 DQAAEPIRGQTVLVKSPCKR-CTMDSSDPA--SPAYIIPRPGG-EVICGGTYGVG--DWDLSVN----PETVQRILKHCL 262 (363)
T ss_dssp CTTEEEEEEEEEEEECCCCC-CEEECSCTT--CCEEEEEETTT-EEEEECCCEET--CCCCSCC----HHHHHHHHHHHH
T ss_pred cCCccccCCeEEEEeCCccc-ceEeeccCC--CcEEEEEcCCC-EEEEEeeeccC--CCCCCCC----HHHHHHHHHHHH
Confidence 58999999999999875411 111110000 12478776 55 49999998874 4566666 677889999999
Q ss_pred ccCCCC------CCceeeeeeEEEeecCCCCCCCCCceeecc-C-------CC---C----CCccc--CcEEEEeecCCc
Q 030321 87 AIYPGM------KNWSFTGARAGLRALPPMTPNGSPPLLGCV-D-------NL---V----GTTHA--CKYWLFGGLGSR 143 (179)
Q Consensus 87 ~~~P~l------~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~-~-------~~---~----~~~~~--~~l~~~~G~g~~ 143 (179)
+++|.+ ++.++++.|+|+||+|+ |++|++|++ + ++ . +.+.. +|+|+++||+|+
T Consensus 263 ~~~P~l~~~~~~~~~~i~~~w~G~rp~t~----d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~ 338 (363)
T 1c0p_A 263 RLDPTISSDGTIEGIEVLRHNVGLRPARR----GGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSA 338 (363)
T ss_dssp HHCGGGSSSSSGGGCEEEEEEEEEEEEET----TSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTC
T ss_pred HhCccccCCcccccceEeeceEEECCCCC----CCceeEEEecccccccccCccccccccccccccccceEEEecCCCCc
Confidence 999988 45789999999999999 999999974 2 10 0 00001 399999999999
Q ss_pred chhHHHHHHHHHHHHHHcC
Q 030321 144 GLLYHGWFGKLVAQAVLAC 162 (179)
Q Consensus 144 G~~~ap~~g~~lA~~i~~~ 162 (179)
||++||++|+++|++|.+.
T Consensus 339 G~~~a~~~g~~~a~li~~~ 357 (363)
T 1c0p_A 339 GYQQSWGAAEDVAQLVDEA 357 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chheeccHHHHHHHHHHHH
Confidence 9999999999999999863
No 10
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.83 E-value=1.1e-20 Score=156.17 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=109.1
Q ss_pred CCCCCCceecceeEEEEeCCCCCC--CCCCCCCCccc-cCe-eEEec-CCCeEEEeeccCC---CC--CCCCCccChHHH
Q 030321 5 LSGKLPLRTCRGVIAHMQLPDFIG--EYYPDHGPSIL-SDA-WLAVQ-GSRSLLMGSTKEW---KS--RNSSPIVSADEA 74 (179)
Q Consensus 5 l~~~lpl~p~rGq~~~~~~~~~~~--~~~p~~~~~i~-~~~-y~~~~-~g~~~~iG~t~e~---~~--~~~~~~~~~~~~ 74 (179)
+..++|+.|+|||++.++.+.... ...|....... +.. |+.|. ++. +++|++... .. ...+...+
T Consensus 207 l~~~l~~~p~rg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~-~~iG~~~~g~~~~~~~~~~~~~~~---- 281 (372)
T 2uzz_A 207 LLPELPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDA-LKIGKHNGGQVIHSADERVPFAEV---- 281 (372)
T ss_dssp TSTTCCCEEEECCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECCSSSC-EEEEESSCCEECCSGGGCCCTTTS----
T ss_pred hccccCceEEEEEEEEEEeccccCccccCCEEEEecCCCCeEEecCCCCCe-EEEEecCCCCccCChhhccCCCCC----
Confidence 444689999999999987652111 11221100000 123 66665 555 999987521 10 11112222
Q ss_pred HHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHH
Q 030321 75 SKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKL 154 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~ 154 (179)
.+..+++++.+.++||.+. ++...|+|+|++|| |++|+||++|+.+ |+|+++||+|+||++||++|++
T Consensus 282 ~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r~~t~----d~~p~ig~~~~~~------~l~~~~G~~g~G~~~ap~~g~~ 349 (372)
T 2uzz_A 282 VSDGSEAFPFLRNVLPGIG--CCLYGAACTYDNSP----DEDFIIDTLPGHD------NTLLITGLSGHGFKFASVLGEI 349 (372)
T ss_dssp TTGGGSSHHHHHHHSCSCC--CEEEECCCEEEECT----TSCCCEEEETTEE------EEEEECCCCSCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC--ccceeeEEeeccCC----CCCeEEecCCCCC------CEEEEeCCCccchhccHHHHHH
Confidence 2345678888899999987 67899999999999 9999999999888 9999999999999999999999
Q ss_pred HHHHHHcCCCCCCchhhhhh
Q 030321 155 VAQAVLACSENIIPSEVTSW 174 (179)
Q Consensus 155 lA~~i~~~~~~~~~~~~~~~ 174 (179)
+|++|.++..+.....|+.-
T Consensus 350 la~~i~~~~~~~~~~~~~~~ 369 (372)
T 2uzz_A 350 AADFAQDKKSDFDLTPFRLS 369 (372)
T ss_dssp HHHHHTTCCCSSCCGGGCST
T ss_pred HHHHHhCCCCCCCccccCcC
Confidence 99999998776665666543
No 11
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.82 E-value=1e-19 Score=151.65 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=112.3
Q ss_pred CCCCCCceecceeEEEEeCCCCCCCCCCCCCCccc---cCeeEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHH
Q 030321 5 LSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSIL---SDAWLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEE 80 (179)
Q Consensus 5 l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~---~~~y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~ 80 (179)
++.++|+.+.|||++.+++... ... +.+. ...|+.|. ++ ++++|++.+.. .+.+...+ .+..+.
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~y~~p~~~g-~~~ig~~~~~~-~~~~~~~~----~~~~~~ 304 (405)
T 2gag_B 237 AGFELPIQSHPLQALVSELFEP---VHP---TVVMSNHIHVYVSQAHKG-ELVMGAGIDSY-NGYGQRGA----FHVIQE 304 (405)
T ss_dssp HTCCCCEEEEEEEEEEEEEBCS---CCC---SEEEETTTTEEEEECTTS-EEEEEEEECSS-CCCSSCCC----THHHHH
T ss_pred cCCCCCccccceeEEEecCCcc---ccC---ceEEeCCCcEEEEEcCCC-cEEEEeccCCC-CccccCCC----HHHHHH
Confidence 3446899999999998875321 011 1111 22377776 55 59999987642 23444455 556788
Q ss_pred HHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 81 LLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 81 l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
+++.+.+++|.+.+.++.+.|+|+|++++ |++|+||++| .+ |+|+++||+|+||++||.+|+++|++|.
T Consensus 305 l~~~~~~~~p~l~~~~~~~~w~g~~~~t~----d~~p~ig~~~-~~------~l~~~~G~~g~G~~~a~~~g~~la~~i~ 373 (405)
T 2gag_B 305 QMAAAVELFPIFARAHVLRTWGGIVDTTM----DASPIISKTP-IQ------NLYVNCGWGTGGFKGTPGAGFTLAHTIA 373 (405)
T ss_dssp HHHHHHHHCGGGGGCEECEEEEEEEEEET----TSCCEEEECS-SB------TEEEEECCGGGCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccCCcceEEeeccccCC----CCCCEecccC-CC------CEEEEecCCCchhhHHHHHHHHHHHHHh
Confidence 88899999999988899999999999999 9999999987 56 9999999999999999999999999999
Q ss_pred cCCCCCCchhhhhh
Q 030321 161 ACSENIIPSEVTSW 174 (179)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (179)
++....+...|+..
T Consensus 374 g~~~~~~~~~~~~~ 387 (405)
T 2gag_B 374 NDEPHELNKPFSLE 387 (405)
T ss_dssp HTSCCTTTTTSCST
T ss_pred CCCCCccccccCcc
Confidence 87655444445433
No 12
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.81 E-value=3.7e-19 Score=148.61 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=111.8
Q ss_pred ccCCCCCCceecceeEEEEeCCCCCCCCCCCCCCc-ccc-----CeeEEec-CC---CeEEEeeccCCC----CCCCCCc
Q 030321 3 PELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPS-ILS-----DAWLAVQ-GS---RSLLMGSTKEWK----SRNSSPI 68 (179)
Q Consensus 3 p~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~-i~~-----~~y~~~~-~g---~~~~iG~t~e~~----~~~~~~~ 68 (179)
+.++..+|+.+.|||++.+++.... ..+|..... -.. ..|+.|. ++ +++++|++.+.. ..+.+..
T Consensus 213 ~~~g~~~p~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 291 (397)
T 2oln_A 213 EPLGARLAYSVYEMAIAAYRQATPV-TEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGV 291 (397)
T ss_dssp GGGTCCCCEEEEEEEEEEEEBCSCC-SCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCSS
T ss_pred hhcCCCCCeeEEEEEEEEEeecCcc-cCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccCC
Confidence 4555678999999999999865311 112321100 001 2377665 43 159999876411 1123344
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEee--cCCCCCCCCCceeeccCC----CCCCcccCcEEEEeecCC
Q 030321 69 VSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRA--LPPMTPNGSPPLLGCVDN----LVGTTHACKYWLFGGLGS 142 (179)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~--~tp~~~~D~~PiiG~~~~----~~~~~~~~~l~~~~G~g~ 142 (179)
++ .+..+.+++.+.++||.+.. ++.+.|+|+|+ +|| |++|+||++|+ .+ |+|+++| |
T Consensus 292 ~~----~~~~~~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~----D~~p~ig~~~~~~~~~~------~l~~a~G--g 354 (397)
T 2oln_A 292 AD----RRQMDRLSGWLRDHLPTVDP-DPVRTSTCLAVLPTDP----ERQFFLGTARDLMTHGE------KLVVYGA--G 354 (397)
T ss_dssp CC----HHHHHHHHHHHHHHCTTBCS-SCSEEEEEEEEEESST----TCCCEEEESTTTSTTGG------GEEEEEE--S
T ss_pred CC----HHHHHHHHHHHHHhCCCCCC-CceeEEEEEecCCcCC----CCCeEeecCCccccCCC------CEEEEeC--c
Confidence 55 56778899999999999876 78899999988 999 99999999987 77 9999999 7
Q ss_pred cchhHHHHHHHHHHHHHHcCCCCCCchhhhh
Q 030321 143 RGLLYHGWFGKLVAQAVLACSENIIPSEVTS 173 (179)
Q Consensus 143 ~G~~~ap~~g~~lA~~i~~~~~~~~~~~~~~ 173 (179)
+||++||++|+++|++|++++.+.+...|+.
T Consensus 355 ~G~~~ap~~g~~la~~i~~~~~~~~~~~f~~ 385 (397)
T 2oln_A 355 WAFKFVPLFGRICADLAVEDSTAYDISRLAP 385 (397)
T ss_dssp SCGGGHHHHHHHHHHHHHHSCCSSCCGGGSC
T ss_pred chhhccHHHHHHHHHHHhCCCCCCCcccccc
Confidence 8999999999999999999876655555543
No 13
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.80 E-value=1.4e-19 Score=148.35 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=102.2
Q ss_pred CCceecceeEEEEeCCCCC-CCCCCCCCCccccCe-eEEec-CCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQLPDFI-GEYYPDHGPSILSDA-WLAVQ-GSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~-~~~~p~~~~~i~~~~-y~~~~-~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
+|+.|+|||++.++.+... ...|+..... +.+ ++.+. +++ +++|+|.+.. .+.+..++ .+.++++++.+
T Consensus 225 ~~i~p~rG~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~g~-~~iG~t~e~~-~~~~~~~~----~~~~~~l~~~~ 296 (369)
T 3dme_A 225 PPEYLCKGSYFTLAGRAPFSRLIYPVPQHA--GLGVHLTLDLGGQ-AKFGPDTEWI-ATEDYTLD----PRRADVFYAAV 296 (369)
T ss_dssp CCCEEEEEEEEECSSSCSCSSEEEECTTCS--SCCCCEEECTTSC-EEECCCCEEE-SSCCCCCC----GGGGGGHHHHH
T ss_pred ceeeecceEEEEECCCCccCceeecCCCCC--CceEEEeCccCCc-EEECCCcccc-cccccccC----HHHHHHHHHHH
Confidence 5799999999998754211 0011111111 223 45544 665 9999998762 13455666 56678899999
Q ss_pred hccCCCCCCceeeeeeEEEeecC-----CCCCCCCCcee-ec-cCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHH
Q 030321 86 SAIYPGMKNWSFTGARAGLRALP-----PMTPNGSPPLL-GC-VDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQA 158 (179)
Q Consensus 86 ~~~~P~l~~~~i~~~w~G~R~~t-----p~~~~D~~Pii-G~-~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~ 158 (179)
.+++|.+.+.++.+.|+|+||++ + |+.|+| |+ .+..+ |+|+++||+|+||++||++|+++|++
T Consensus 297 ~~~~P~l~~~~v~~~w~G~Rp~~~~~~~~----d~~p~i~g~~~~~~~------~l~~~~G~~~~G~t~ap~~a~~~a~~ 366 (369)
T 3dme_A 297 RSYWPALPDGALAPGYTGIRPKISGPHEP----AADFAIAGPASHGVA------GLVNLYGIESPGLTASLAIAEETLAR 366 (369)
T ss_dssp HTTCTTCCTTCCEEEEEEEEEESSCTTSC----CCCCEEECHHHHCCT------TEEEEECCCTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCCChhhceecceeccccccCCCCC----cCCeEEecccccCCC------CEEEEeCCCCchHhccHHHHHHHHHH
Confidence 99999999999999999999996 6 899999 88 47777 99999999999999999999999999
Q ss_pred HH
Q 030321 159 VL 160 (179)
Q Consensus 159 i~ 160 (179)
|.
T Consensus 367 i~ 368 (369)
T 3dme_A 367 LA 368 (369)
T ss_dssp HC
T ss_pred hh
Confidence 84
No 14
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.77 E-value=8.9e-19 Score=148.13 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCccc--cCe-eEEec-CCCeEEEeec---cCCCC---------CCC-CCccCh
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPSIL--SDA-WLAVQ-GSRSLLMGST---KEWKS---------RNS-SPIVSA 71 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~--~~~-y~~~~-~g~~~~iG~t---~e~~~---------~~~-~~~~~~ 71 (179)
.++.|.++++.++..+......+. ..+.+. ..+ |+.+. +++.++||.. +.... ... +...+
T Consensus 229 ~~~~p~~~~~~~~~l~~~~~~~~~-~~p~~~~~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~- 306 (438)
T 3dje_A 229 NQLRPTAWTLVHIALKPEERALYK-NIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIP- 306 (438)
T ss_dssp TCCEEEEEEEEEEECCGGGHHHHT-TCCEEEETTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCCSSCB-
T ss_pred cceeeEEEEEEEEEcChHHhhhhc-CCCEEEECCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCcccccCC-
Confidence 578898888888765432100011 112221 334 66565 4444777532 11100 000 12233
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHH
Q 030321 72 DEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWF 151 (179)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~ 151 (179)
.+..+.+.+.+.++||.|++.++.+.|+|+|++|| |++|+||++|..+ |+|+++||+|+||+++|++
T Consensus 307 ---~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~~~~t~----D~~piig~~p~~~------~l~~a~G~~g~G~~~ap~~ 373 (438)
T 3dje_A 307 ---KEAETRVRALLKETMPQLADRPFSFARICWCADTA----NREFLIDRHPQYH------SLVLGCGASGRGFKYLPSI 373 (438)
T ss_dssp ---HHHHHHHHHHHHHHCGGGTTCCCSEEEEEEEEECT----TSCCEEEECSSCT------TEEEEECCTTCCGGGTTTH
T ss_pred ---HHHHHHHHHHHHHhCcccccCCcceeeEEEeCcCC----CCCeEEeecCCCC------CEEEEECCCCcchhhhHHH
Confidence 56677888899999999999999999999999999 9999999999888 9999999999999999999
Q ss_pred HHHHHHHHHcCCCC
Q 030321 152 GKLVAQAVLACSEN 165 (179)
Q Consensus 152 g~~lA~~i~~~~~~ 165 (179)
|++||++|.++..+
T Consensus 374 g~~la~~i~g~~~~ 387 (438)
T 3dje_A 374 GNLIVDAMEGKVPQ 387 (438)
T ss_dssp HHHHHHHHHTCCCH
T ss_pred HHHHHHHHhCCCCh
Confidence 99999999987643
No 15
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=99.76 E-value=1.3e-18 Score=146.50 Aligned_cols=137 Identities=17% Similarity=0.064 Sum_probs=99.7
Q ss_pred cCCCCCCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCCCCCC----------CccChH
Q 030321 4 ELSGKLPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKSRNSS----------PIVSAD 72 (179)
Q Consensus 4 ~l~~~lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~~~~~----------~~~~~~ 72 (179)
.++..+|+.|+|||++.++.+.. .+. +.+...+ |+.|..++.+++|+|++....+++ ...+
T Consensus 243 ~~g~~~~~~~~~g~~~~~~~~~~---~~~---~~~~~~~~y~~p~~~g~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~-- 314 (405)
T 3c4n_A 243 GLGLHTRHGRAYRQFPRLDLLSG---AQT---PVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLR-- 314 (405)
T ss_dssp HHCCCCCCEEEEEECCEECSCCC---TTC---CEEEETTEEEEEETTEEEEECCCCSCBCSSCCCCCCCBTTBCCSSC--
T ss_pred hcCCCCCcccceeEEEEECCCCc---cCC---CeEECCcEEEEEcCCCeEEEeccccccccCcCcccccccccccCCC--
Confidence 34556789999999998875431 111 1122333 888874435889988542112222 1223
Q ss_pred HHHHHHHHHHHHHhccCCCCCCce---------eeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCc
Q 030321 73 EASKALEELLPKASAIYPGMKNWS---------FTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSR 143 (179)
Q Consensus 73 ~~~~~~~~l~~~~~~~~P~l~~~~---------i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~ 143 (179)
.+.++.+.+. .++||.+++.+ +.+.|+|+|++|+ |++|+||+++ + |+|+++||+++
T Consensus 315 --~~~~~~l~~~-~~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~----D~~P~ig~~~--~------gl~~a~G~~g~ 379 (405)
T 3c4n_A 315 --RELLEDLVGL-MDAVPALAGEGLELGRSSADVPGAWLALPGGRP----DAPPQAEELA--P------GLHLLLGGPLA 379 (405)
T ss_dssp --HHHHHHHHHH-TTTCGGGGSSCBCCCSSGGGSCEEEEEEGGGCT----TCCCEEEEEE--T------TEEEEECCTTH
T ss_pred --HHHHHHHHHH-HHhCCCccccCccccccccceeeEEEeecCcCC----CCCCEecccC--C------CeEEEEccCcH
Confidence 5666677655 48999887765 8899999999999 9999999997 5 99999999876
Q ss_pred chhHHHHHHHHHHHHHHcCCC
Q 030321 144 GLLYHGWFGKLVAQAVLACSE 164 (179)
Q Consensus 144 G~~~ap~~g~~lA~~i~~~~~ 164 (179)
+++||++|+++|++|.++++
T Consensus 380 -~~~ap~~a~~la~~i~~~~~ 399 (405)
T 3c4n_A 380 -DTLGLAAAHELAQRVSASLE 399 (405)
T ss_dssp -HHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHhCchh
Confidence 59999999999999998654
No 16
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.70 E-value=7.5e-17 Score=147.02 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=108.1
Q ss_pred CCCCCCceecceeEEEEeCCCCCCC-C---CCCCCCccc--c-CeeEEecCCCeEEEeeccCCC-------CCC------
Q 030321 5 LSGKLPLRTCRGVIAHMQLPDFIGE-Y---YPDHGPSIL--S-DAWLAVQGSRSLLMGSTKEWK-------SRN------ 64 (179)
Q Consensus 5 l~~~lpl~p~rGq~~~~~~~~~~~~-~---~p~~~~~i~--~-~~y~~~~~g~~~~iG~t~e~~-------~~~------ 64 (179)
++.++|+.|+|||++.+++...... . .....+.+. . ..|+.+..+. +++|++.... ...
T Consensus 214 ~g~~~pl~p~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~y~r~~~~~-l~iG~~~~~~~~~~~~~~~~t~~~~~ 292 (830)
T 1pj5_A 214 IGMAVPLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREHGDR-YGIGSYAHRPMPVDVDTLGAYAPETV 292 (830)
T ss_dssp TTCCCCCEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEETTE-EEEEECCSCCCBCCGGGSCCCCGGGC
T ss_pred hCCCccceeceeEEEEEecCcccccccccccCCCCCeEEcCCCCEEEEEeCCe-EEEeccCCCCcccCcccccccccccc
Confidence 4456899999999999976422100 0 011112111 1 2377777664 9999874310 000
Q ss_pred ------CCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEe
Q 030321 65 ------SSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFG 138 (179)
Q Consensus 65 ------~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~ 138 (179)
.+...+ .+.++.+++.+.+++|.+.+.++.+.|+|+|++|| |++|+||++|+.+ |+|+++
T Consensus 293 ~~~~~~~~~~~~----~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~----D~~PiIG~~p~~~------gl~va~ 358 (830)
T 1pj5_A 293 SEHHMPSRLDFT----LEDFLPAWEATKQLLPALADSEIEDGFNGIFSFTP----DGGPLLGESKELD------GFYVAE 358 (830)
T ss_dssp BTTBSTTEECCC----HHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEECT----TSCCEEEECSSSB------TEEEEE
T ss_pred cccccccccCCC----HHHHHHHHHHHHHhCccccccCcceEEEeecccCC----CCCeeeccCCCCC------CEEEEE
Confidence 112234 56678899999999999999999999999999999 9999999999888 999999
Q ss_pred ecCCcchhHHHHHHHHHHHHHHcCCCCCCchhh
Q 030321 139 GLGSRGLLYHGWFGKLVAQAVLACSENIIPSEV 171 (179)
Q Consensus 139 G~g~~G~~~ap~~g~~lA~~i~~~~~~~~~~~~ 171 (179)
|| |+++||++|++||++|.++.++.+...|
T Consensus 359 G~---G~~~ap~~g~~la~li~~~~~~~dl~~~ 388 (830)
T 1pj5_A 359 AV---WVTHSAGVAKAMAELLTTGRSETDLGEC 388 (830)
T ss_dssp SC---CGGGHHHHHHHHHHHHHHSSCSSCCTTT
T ss_pred Cc---hHHhhHHHHHHHHHHHhCCCCCcccccc
Confidence 87 7999999999999999988755443333
No 17
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.35 E-value=5.7e-12 Score=108.82 Aligned_cols=141 Identities=8% Similarity=-0.049 Sum_probs=96.2
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCccccCe-eEEecCCCeEEEeeccCCCC-CCCCCccChHHHHHHHHHHHHHHh
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPSILSDA-WLAVQGSRSLLMGSTKEWKS-RNSSPIVSADEASKALEELLPKAS 86 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~i~~~~-y~~~~~g~~~~iG~t~e~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 86 (179)
.|++|+|||+++++.... ...+...+.-.+.. |+.|..++.+++|+|.+... ...+..++ .+.++.+++.+.
T Consensus 224 ~~i~p~rG~~~~~~~~~~--~~~~~~~~~~dg~~~~~~P~~~g~~~iG~t~~~~~~~~~~~~~~----~~~~~~l~~~~~ 297 (501)
T 2qcu_A 224 YGIRLIKGSHIVVPRVHT--QKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIE----ESEINYLLNVYN 297 (501)
T ss_dssp SCBCCEEEEEEEEECSSS--CSCEEEEECTTSCEEEEEEETTTEEEEECCCEECCSCGGGCCCC----HHHHHHHHHHHH
T ss_pred cccccceeEEEEECCCCC--CceEEEeecCCCCEEEEEEcCCCcEEEcCCCCCCCCCcCCCCCC----HHHHHHHHHHHH
Confidence 689999999999984311 00011010000233 67776433489999865421 12345566 667889999999
Q ss_pred ccCC-CCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCC-CC----cccCcEEEEeecCCcchhHHHHHHHHHHHHHH
Q 030321 87 AIYP-GMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLV-GT----THACKYWLFGGLGSRGLLYHGWFGKLVAQAVL 160 (179)
Q Consensus 87 ~~~P-~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~-~~----~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~ 160 (179)
++|| .+...++++.|+|+||.++ |+.|++|+++.-- -. ....|++.++|. |++.+|.+|+.+++++.
T Consensus 298 ~~~p~~l~~~~v~~~~aG~Rp~~~----d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg---~~t~~~~~Ae~~~~~~~ 370 (501)
T 2qcu_A 298 THFKKQLSRDDIVWTYSGVRPLCD----DESDSPQAITRDYTLDIHDENGKAPLLSVFGG---KLTTYRKLAEHALEKLT 370 (501)
T ss_dssp HHBSSCCCGGGCCEEEEEEECCBC----CCCSSGGGSCCCCEEEEEEETTEEEEEEEECC---CGGGHHHHHHHHHHHHG
T ss_pred HhcCCCCCcccEEEEEEEEeeecC----CCCCccccCcCceEEEecccCCCCCeEEEeCc---cccchHHHHHHHHHHHH
Confidence 9999 7888899999999999999 9999999876310 00 001255555543 79999999999999997
Q ss_pred cC
Q 030321 161 AC 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 371 ~~ 372 (501)
T 2qcu_A 371 PY 372 (501)
T ss_dssp GG
T ss_pred Hh
Confidence 64
No 18
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.22 E-value=1.1e-10 Score=102.57 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=90.7
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCc--cccCe-eEEecCCCeEEEeeccCCC-CCCCCCccChHHHHHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPS--ILSDA-WLAVQGSRSLLMGSTKEWK-SRNSSPIVSADEASKALEELLPK 84 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~--i~~~~-y~~~~~g~~~~iG~t~e~~-~~~~~~~~~~~~~~~~~~~l~~~ 84 (179)
.+|+|+|||+++++..... ...+...+. --+.. |+.|.++. ++||+|.+.. ....+..++ .+.++.+++.
T Consensus 264 ~~i~p~rG~~l~~~~~~~~-~~~~~~~~~~~~dgr~~~~~P~~~~-~~iG~t~~~~~~~~~~~~~~----~~~~~~ll~~ 337 (571)
T 2rgh_A 264 PKMRPTKGIHLVVDAKKLP-VPQPTYFDTGKQDGRMVFAIPRENK-TYFGTTDTDYQGDFTDPKVT----QEDVDYLLDV 337 (571)
T ss_dssp CCBCCEEEEEEEEEGGGSC-CSSCEEEECSSSSSCEEEEEEETTE-EEECCCCEECCSCSSSCCCC----HHHHHHHHHH
T ss_pred ceeeccceEEEEeccccCC-CCcEEEEeccCCCCcEEEEEEcCCe-EEEcCCCcCCCCCcCCCCCC----HHHHHHHHHH
Confidence 5799999999999753210 011111100 00223 67777765 9999997632 123355666 6678889999
Q ss_pred HhccCCC--CCCceeeeeeEEEeecCCCCCCCCC---------ceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHH
Q 030321 85 ASAIYPG--MKNWSFTGARAGLRALPPMTPNGSP---------PLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGK 153 (179)
Q Consensus 85 ~~~~~P~--l~~~~i~~~w~G~R~~tp~~~~D~~---------PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~ 153 (179)
+.++||. +...+|++.|+|+||.++ |+. |+|+.. .+ |+|.++|. + ++.++.+|+
T Consensus 338 ~~~~~P~~~l~~~~v~~~waG~Rp~~~----d~~~~~~~~~r~~~i~~~--~~------gl~~v~GG--k-~Tt~r~~Ae 402 (571)
T 2rgh_A 338 INHRYPEANITLADIEASWAGLRPLLI----GNSGSPSTISRGSSLERE--PD------GLLTLSGG--K-ITDYRKMAE 402 (571)
T ss_dssp HHHHSTTTCCCGGGCCEEEEEEECCBC----C-----------EEEEEC--TT------SCEEEEEC--C-GGGHHHHHH
T ss_pred HHHhcCccCCchhceeEEeEEeeeccC----CCCCCcccCCCCcEEecC--CC------CeEEEeCc--c-hhhHHHHHH
Confidence 9999997 467789999999999998 653 677653 24 89976653 3 999999999
Q ss_pred HHHHHHHc
Q 030321 154 LVAQAVLA 161 (179)
Q Consensus 154 ~lA~~i~~ 161 (179)
.+++++.+
T Consensus 403 ~~~~~i~~ 410 (571)
T 2rgh_A 403 GALRLIRQ 410 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 19
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.00 E-value=1.9e-09 Score=94.39 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=89.8
Q ss_pred CCceecceeEEEEeCCCCCCCCCCCCCCc-cccCe-eEEecCCCeEEEeeccCC-CCCCCCCccChHHHHHHHHHHHHHH
Q 030321 9 LPLRTCRGVIAHMQLPDFIGEYYPDHGPS-ILSDA-WLAVQGSRSLLMGSTKEW-KSRNSSPIVSADEASKALEELLPKA 85 (179)
Q Consensus 9 lpl~p~rGq~~~~~~~~~~~~~~p~~~~~-i~~~~-y~~~~~g~~~~iG~t~e~-~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (179)
++++|+|||++.++..... ...+...+. -.+.. |+.|.++. ++||+|.+. .....+..++ .+.++.+++.+
T Consensus 245 ~~v~p~kG~~lvl~~~~~~-~~~~~~~~~~~dgr~v~~iP~~g~-~~iGtT~~~~~~~~~~~~~t----~~~i~~ll~~~ 318 (561)
T 3da1_A 245 KYLKLSKGVHLVVDQSRFP-LRQAVYFDTESDGRMIFAIPREGK-TYIGTTDTFYDKDIASPRMT----VEDRDYILAAA 318 (561)
T ss_dssp SEEEEEEEEEEEEEGGGSC-CSSEEEECCSSSCCCEEEEEETTE-EEECCCCEEECSCTTCCCCC----HHHHHHHHHHH
T ss_pred ceEEeccEEEEEECCccCC-CceEEEeccCCCCcEEEEEecCCC-EEEcCCCCccCCCcCCCCCC----HHHHHHHHHHH
Confidence 6899999999999753211 011111100 00333 67777765 999999864 2123466777 77788999999
Q ss_pred hccCCCCC--CceeeeeeEEEeecCCCCCCC---------CCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHH
Q 030321 86 SAIYPGMK--NWSFTGARAGLRALPPMTPNG---------SPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKL 154 (179)
Q Consensus 86 ~~~~P~l~--~~~i~~~w~G~R~~tp~~~~D---------~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~ 154 (179)
.++||.+. ...|+..|+|+||.+. | +-.+|...+ + |++.++| |. +|.++.+|+.
T Consensus 319 ~~~~P~l~~~~~~v~~~~aGlRPl~~----~~~~~~~~~sR~~~i~~~~--~------gli~i~G--gk-~Tt~r~mAe~ 383 (561)
T 3da1_A 319 NYMFPSLRLTADDVESSWAGLRPLIH----EEGKKASEISRKDEIFFSD--S------GLISIAG--GK-LTGYRKMAER 383 (561)
T ss_dssp HHHCTTCCCCTTTEEEEEEEEEEEEE----C-----------CCEEECS--S------CCEEECC--CC-STTHHHHHHH
T ss_pred HHhCCCCCCChhhEEEEeEEeccccC----CCCCCccccccceEEEecC--C------CeEEEeC--Ch-hhhHHHHHHH
Confidence 99999886 7889999999999876 3 122232222 3 8777764 55 9999999999
Q ss_pred HHHHHH
Q 030321 155 VAQAVL 160 (179)
Q Consensus 155 lA~~i~ 160 (179)
+++++.
T Consensus 384 ~~d~~~ 389 (561)
T 3da1_A 384 TVDAVA 389 (561)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 20
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=92.44 E-value=0.33 Score=39.17 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=57.0
Q ss_pred eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCC---CCCCCcee
Q 030321 43 WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMT---PNGSPPLL 119 (179)
Q Consensus 43 y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~---~~D~~Pii 119 (179)
|+.|..++++.+|.+.... .. .. .....+.++...+.+|.+...++.+.|.|..|.+... ..++..++
T Consensus 212 ~~~P~~~~~~~vg~~~~~~--~~---~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~li 282 (397)
T 3cgv_A 212 WVFPKGEGMANVGIGSSIN--WI---HN----RFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMPITMPGLMLV 282 (397)
T ss_dssp EEEEEETTEEEEEEEEETT--TC---SC----HHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSCCEETTEEEC
T ss_pred EEEECCCCeEEEEEEeccc--cc---cC----CCCHHHHHHHHHHhCcCCCCCeEEeeeeeeeecCCCccceeeCCEEEE
Confidence 5556533347788765542 11 11 1222333334344455556778889999998874310 01344444
Q ss_pred eccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 120 GCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 120 G~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
|-.- .....++|.|+.+|...|..+|+.+..
T Consensus 283 GDAa-----------~~~~P~~G~G~~~a~~~a~~la~~l~~ 313 (397)
T 3cgv_A 283 GDAA-----------RLIDPITGGGIANAIVSGMYAAQVTKE 313 (397)
T ss_dssp GGGG-----------TCSCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred Eccc-----------cCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4321 122457899999999999998887753
No 21
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=87.56 E-value=0.6 Score=38.81 Aligned_cols=84 Identities=13% Similarity=-0.013 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccCCC---CCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEee-cCCcchhHHHH
Q 030321 75 SKALEELLPKASAIYPG---MKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGG-LGSRGLLYHGW 150 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~---l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G-~g~~G~~~ap~ 150 (179)
++..+.+++.+.+++.. .....+.+.+-++-.+++ ++.+.++.+...- ....++||++.. +.|.|+--+-.
T Consensus 387 ~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~----g~~~~~~~~~~~l-~~~~~~l~l~G~~~~G~gv~~a~~ 461 (477)
T 3nks_A 387 ELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTL----GHWQKLESARQFL-TAHRLPLTLAGASYEGVAVNDCIE 461 (477)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBT----THHHHHHHHHHHH-HHTTCSEEECSTTTSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCC----CHHHHHHHHHHHH-HhcCCCEEEEccCCCCCcHHHHHH
Confidence 34445555555555532 223345555567766788 8877766653210 000128888764 78899999999
Q ss_pred HHHHHHHHHHcCC
Q 030321 151 FGKLVAQAVLACS 163 (179)
Q Consensus 151 ~g~~lA~~i~~~~ 163 (179)
.|+.+|+.|++..
T Consensus 462 sg~~aA~~il~~~ 474 (477)
T 3nks_A 462 SGRQAAVSVLGTE 474 (477)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998754
No 22
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=87.41 E-value=3 Score=33.05 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEE-------eecCCcchhHHHH
Q 030321 78 LEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLF-------GGLGSRGLLYHGW 150 (179)
Q Consensus 78 ~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~-------~G~g~~G~~~ap~ 150 (179)
.+..+++..+.+|.+...+.++.+.|..+... ...|+.+ + +++++ .-++|.|+.+|-.
T Consensus 238 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~-----~------~v~lvGDAA~~~~P~~G~Gi~~A~~ 302 (397)
T 3oz2_A 238 LKNYLDRFIENHPGLKKGQDIQLVTGGVSVSK----VKMPITM-----P------GLMLVGDAARLIDPITGGGIANAIV 302 (397)
T ss_dssp HHHHHHHHHHTCHHHHTSEEEEEEEEEEECCC----CCSCCEE-----T------TEEECGGGGTCSCTTTCCCHHHHHH
T ss_pred HHHHHHHHHHhCccccccceeeeeeccccccC----cccceee-----e------eEEEcccccccCCCCcchhHHHHHH
Confidence 34455555556777777788888888888766 4444333 1 55443 2358999999999
Q ss_pred HHHHHHHHHH
Q 030321 151 FGKLVAQAVL 160 (179)
Q Consensus 151 ~g~~lA~~i~ 160 (179)
.|+++|+.|.
T Consensus 303 ~g~~~A~~i~ 312 (397)
T 3oz2_A 303 SGMYAAQVTK 312 (397)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
No 23
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=85.67 E-value=1.6 Score=35.96 Aligned_cols=77 Identities=9% Similarity=-0.002 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhccCCCCCCce--eeeeeEEEee-cCCCCCCCCCceeeccC-----CCCCCcccCcEEEEee-cCCcch
Q 030321 75 SKALEELLPKASAIYPGMKNWS--FTGARAGLRA-LPPMTPNGSPPLLGCVD-----NLVGTTHACKYWLFGG-LGSRGL 145 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~--i~~~w~G~R~-~tp~~~~D~~PiiG~~~-----~~~~~~~~~~l~~~~G-~g~~G~ 145 (179)
++..+.+++.+.++|+...+.. .+..|..-.| +++ ++.+.+..+. ..+ |||+|.. +.+.|+
T Consensus 381 ~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~----g~~~~~~~~~~~l~~~~~------~l~~aG~~~~g~gv 450 (470)
T 3i6d_A 381 NDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHV----GHKQRIKELREALASAYP------GVYMTGASFEGVGI 450 (470)
T ss_dssp HHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBT----THHHHHHHHHHHHHHHST------TEEECSTTTSCCSH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCC----CHHHHHHHHHHHHHhhCC------CEEEEeecCCCCCH
Confidence 5667788888999998643332 4677887665 555 5433222211 123 8999887 788899
Q ss_pred hHHHHHHHHHHHHHHc
Q 030321 146 LYHGWFGKLVAQAVLA 161 (179)
Q Consensus 146 ~~ap~~g~~lA~~i~~ 161 (179)
--|...|+.+|+.|+.
T Consensus 451 ~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 451 PDCIDQGKAAVSDALT 466 (470)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999864
No 24
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=82.57 E-value=3.2 Score=34.91 Aligned_cols=94 Identities=15% Similarity=-0.003 Sum_probs=59.8
Q ss_pred eEEecCCCeEEEeeccCCCCCCCCCccChHHHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeecc
Q 030321 43 WLAVQGSRSLLMGSTKEWKSRNSSPIVSADEASKALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCV 122 (179)
Q Consensus 43 y~~~~~g~~~~iG~t~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~ 122 (179)
|+.|..++ ..+|..+.. .. .++ .+..+.+.+.. ...|.+....++..|.|.++... .++..+||-.
T Consensus 281 ~~~P~~~~-~~~g~~~~~--~~----~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~rv~liGDA 346 (511)
T 2weu_A 281 WTIPLFKR-DGNGYVYSD--EF----ISP---EEAERELRSTV-APGRDDLEANHIQMRIGRNERTW---INNCVAVGLS 346 (511)
T ss_dssp EEEECSSE-EEEEEEECT--TT----SCH---HHHHHHHHHHH-CTTCTTSCCEEEECCCEEESCSE---ETTEEECGGG
T ss_pred EEEECCCc-eEEEEEECC--CC----CCH---HHHHHHHHHHh-CcccccccceeEEeecccccccc---CCCEEEEech
Confidence 45555443 666765432 11 121 23333444333 44455666777888999876442 2888888865
Q ss_pred CCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 123 DNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 123 ~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
- ....-++|.|+.+|...|..||+++.+
T Consensus 347 A-----------h~~~P~~g~G~~~a~~da~~La~~l~~ 374 (511)
T 2weu_A 347 A-----------AFVEPLESTGIFFIQHAIEQLVKHFPG 374 (511)
T ss_dssp T-----------EECCGGGCCHHHHHHHHHHHHHHTCCC
T ss_pred h-----------hccCccccccHHHHHHHHHHHHHHhcc
Confidence 2 234577899999999999999999875
No 25
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=76.93 E-value=1.1 Score=36.41 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=29.2
Q ss_pred CCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 114 GSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 114 D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
|+.++||-.. .....+.|.|+.+|...|..+|+.|..
T Consensus 288 ~~v~lvGDAa-----------~~~~P~~G~G~~~A~~~a~~la~~l~~ 324 (421)
T 3nix_A 288 DGFVLTGNAT-----------EFLDPIFSSGATFAMESGSKGGKLAVQ 324 (421)
T ss_dssp TTEEECGGGT-----------CBCCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccc-----------cccCCcccccHHHHHHHHHHHHHHHHH
Confidence 7888888653 233567999999999999999998864
No 26
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=73.23 E-value=15 Score=30.21 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=37.8
Q ss_pred cCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEee--------cCCcchhHHHHHHHHHHHHH
Q 030321 88 IYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGG--------LGSRGLLYHGWFGKLVAQAV 159 (179)
Q Consensus 88 ~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G--------~g~~G~~~ap~~g~~lA~~i 159 (179)
+.|.+.++++++.|.+..+... ..-.+. .+ ++ +..| +.|.|+.+|...|..+|+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~p~~~----~~~~~~-----~~------~v-~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l 316 (453)
T 3atr_A 253 YAPDVDKSKLLVKGGALVPTRR----PLYTMA-----WN------GI-IVIGDSGFTVNPVHGGGKGSAMISGYCAAKAI 316 (453)
T ss_dssp HCTTEEEEEEEEEEEEEEECSS----CCSCSE-----ET------TE-EECGGGGTCSCTTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCeEEeccceeccCCC----CCCcee-----cC------CE-EEEeCcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 4566666678888877766532 100011 12 54 4556 89999999999999999987
Q ss_pred H
Q 030321 160 L 160 (179)
Q Consensus 160 ~ 160 (179)
.
T Consensus 317 ~ 317 (453)
T 3atr_A 317 L 317 (453)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=72.41 E-value=3.4 Score=34.25 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCCCCCC--ceeeeeeEEEee-cCCCCCCCCCceeeccC-----CCCCCcccCcEEEEe-ecCCcch
Q 030321 75 SKALEELLPKASAIYPGMKN--WSFTGARAGLRA-LPPMTPNGSPPLLGCVD-----NLVGTTHACKYWLFG-GLGSRGL 145 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~--~~i~~~w~G~R~-~tp~~~~D~~PiiG~~~-----~~~~~~~~~~l~~~~-G~g~~G~ 145 (179)
++..+.+++.+.++|+.-.. ...+..|..-.+ +++ ++...+..+. ..+ |||++. .+.+.|+
T Consensus 378 e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~----g~~~~~~~~~~~l~~~~~------~l~~aG~~~~g~g~ 447 (475)
T 3lov_A 378 EVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTV----GHADRIQRVREEVLAQYP------GIYLAGLAYDGVGL 447 (475)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCT----THHHHHHHHHHHHHHHST------TEEECSTTTSCSSH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCC----ChHHHHHHHHHHHHhhCC------CEEEEccCCCCCCH
Confidence 45566777777777764222 224567877665 555 5432222111 123 899987 5788899
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 030321 146 LYHGWFGKLVAQAVLACS 163 (179)
Q Consensus 146 ~~ap~~g~~lA~~i~~~~ 163 (179)
--|...|+.+|+.|++.-
T Consensus 448 ~~a~~sG~~aA~~i~~~l 465 (475)
T 3lov_A 448 PDCVASAKTMIESIELEQ 465 (475)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998643
No 28
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=65.32 E-value=17 Score=29.21 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhccCCCCCCceee--eeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecC----CcchhHHH
Q 030321 76 KALEELLPKASAIYPGMKNWSFT--GARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLG----SRGLLYHG 149 (179)
Q Consensus 76 ~~~~~l~~~~~~~~P~l~~~~i~--~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g----~~G~~~ap 149 (179)
+..+.+++.+.+++|.. .++++ ..|-+-.|.... ............+ |||+|..+. |.|+--+.
T Consensus 344 ~~~~~~~~~l~~~~p~~-~~~~~~v~~~~~~~P~~~~---~~~~~~~~~~p~~------gL~laG~~~~~~gg~gv~~~~ 413 (425)
T 3ka7_A 344 SEIEMGLEDLKEIFPGK-RYEVLLIQSYHDEWPVNRA---ASGTDPGNETPFS------GLYVVGDGAKGKGGIEVEGVA 413 (425)
T ss_dssp HHHHHHHHHHHHHSTTC-CEEEEEEEEEBTTBCSBSS---CTTCCCCSBCSSB------TEEECSTTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-ceEEEEEEEECCCcccccc---ccCCCCCCCCCcC------CeEEeCCccCCCCCCccHHHH
Confidence 34578888889999973 34433 334332232210 1111112222233 999987543 57777788
Q ss_pred HHHHHHHHHHHc
Q 030321 150 WFGKLVAQAVLA 161 (179)
Q Consensus 150 ~~g~~lA~~i~~ 161 (179)
++|+..|+.|++
T Consensus 414 ~s~~~~~~~i~~ 425 (425)
T 3ka7_A 414 LGVMSVMEKVLG 425 (425)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHhhC
Confidence 899999988864
No 29
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=62.01 E-value=14 Score=30.66 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=21.3
Q ss_pred CcEEEEeec--CCcchhHHHHHHHHHHHHHHc
Q 030321 132 CKYWLFGGL--GSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 132 ~~l~~~~G~--g~~G~~~ap~~g~~lA~~i~~ 161 (179)
+|||++... -|.|+..+...|+..|+.|+.
T Consensus 458 ~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~ 489 (501)
T 4dgk_A 458 TNLYLVGAGTHPGAGIPGVIGSAKATAGLMLE 489 (501)
T ss_dssp TTEEECCCH------HHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 499998753 346888888999999998863
No 30
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=58.70 E-value=5 Score=33.19 Aligned_cols=78 Identities=14% Similarity=-0.072 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhccCCCCCCce--eeeeeEEEee-cCCCCCCCCCceeecc----CCCCCCcccCcEEEEeec-CCcchh
Q 030321 75 SKALEELLPKASAIYPGMKNWS--FTGARAGLRA-LPPMTPNGSPPLLGCV----DNLVGTTHACKYWLFGGL-GSRGLL 146 (179)
Q Consensus 75 ~~~~~~l~~~~~~~~P~l~~~~--i~~~w~G~R~-~tp~~~~D~~PiiG~~----~~~~~~~~~~~l~~~~G~-g~~G~~ 146 (179)
++..+.+++.+.+++|...... ....|.+-.+ +++ +..+.++.+ ...+ |||++..+ .+.|+-
T Consensus 387 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~----g~~~~~~~~~~~~~~~~------~l~~aG~~~~g~gv~ 456 (478)
T 2ivd_A 387 DALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNL----GHLERVAAIDAALQRLP------GLHLIGNAYKGVGLN 456 (478)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBT----THHHHHHHHHHHHHTST------TEEECSTTTSCCSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCc----CHHHHHHHHHHHHhhCC------CEEEEccCCCCCCHH
Confidence 5566777788888888643221 2345655443 344 433222211 1123 99999876 467888
Q ss_pred HHHHHHHHHHHHHHcC
Q 030321 147 YHGWFGKLVAQAVLAC 162 (179)
Q Consensus 147 ~ap~~g~~lA~~i~~~ 162 (179)
-|..+|+.+|+.|++.
T Consensus 457 gA~~SG~~aA~~i~~~ 472 (478)
T 2ivd_A 457 DCIRNAAQLADALVAG 472 (478)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8889999999999753
No 31
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=52.91 E-value=61 Score=27.87 Aligned_cols=79 Identities=24% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceeeeeeEEEeecCC--CCCCCCCceeeccCCCCCCcccCcEEEEe-ec-CCcchhHH
Q 030321 73 EASKALEELLPKASAIYPGMKNWSFTGARAGLRALPP--MTPNGSPPLLGCVDNLVGTTHACKYWLFG-GL-GSRGLLYH 148 (179)
Q Consensus 73 ~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp--~~~~D~~PiiG~~~~~~~~~~~~~l~~~~-G~-g~~G~~~a 148 (179)
...+.+.+.+....+.+|.+.....+=.=+=+|-.+| -.+.+.+ +...++ |||.+. |- ..+|++.|
T Consensus 458 ~~~~~l~e~~~~~~~~~~g~~~~~~~l~g~e~~~ssp~ri~~~~~~----~~~~~~------gly~~GegaG~a~gi~~A 527 (549)
T 3nlc_A 458 FAVEAIREAIPAFDRKIKGFASEDGLLTGVETRTSSPVCIKRGKDF----QSVNLK------GFYPAGEGAGYAGGILSA 527 (549)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCTTCEEEEEECCSSCSEECCCTTTT----SCTTCB------TEEECHHHHTSCCSHHHH
T ss_pred HHHHHHHHHHHHhhccCcCCCCCCcEEEEEeeccCCceeEEECCCc----eECCcC------CEEEccccCChhhHHHHH
Confidence 3467778888888899998875443222222232222 0011111 223345 999886 22 37899999
Q ss_pred HHHHHHHHHHHHc
Q 030321 149 GWFGKLVAQAVLA 161 (179)
Q Consensus 149 p~~g~~lA~~i~~ 161 (179)
.+.|-.+|+.|..
T Consensus 528 a~~G~~~a~~i~~ 540 (549)
T 3nlc_A 528 GIDGIKVAEAVAR 540 (549)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 32
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=47.03 E-value=28 Score=29.99 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=33.6
Q ss_pred eeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEE-------eecCCcchhHHHHHHHHHHHHHHc
Q 030321 100 ARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLF-------GGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 100 ~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~-------~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
.+.+.|...+ ++++.+.+.. .+ +++++ .-+.|.|+.+|...|.++|+.|..
T Consensus 326 ~~~~~~~~~~----~~~~~~~~~~-~~------rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~ 383 (584)
T 2gmh_A 326 IAYGARALNE----GGFQSIPKLT-FP------GGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFN 383 (584)
T ss_dssp EEEEEEEEEC----CGGGGCCCCE-ET------TEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHH
T ss_pred EEecceEccC----CCcccCCccc-cC------CEEEEcccccccCccccccHHHHHHHHHHHHHHHHH
Confidence 3567777666 5554333221 12 65554 345799999999999999998863
No 33
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=38.40 E-value=33 Score=29.14 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=40.1
Q ss_pred ccCCCCCCceeeeeeEEEee-cCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 87 AIYPGMKNWSFTGARAGLRA-LPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 87 ~~~P~l~~~~i~~~w~G~R~-~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
...|.+.+.+.+..+.|.++ ... ++..+||-.- ....-++|.|+.+|...|..||+.+.+
T Consensus 337 ~~~p~l~~~~~i~~~~~~~~~~~~----~rvvliGDAA-----------h~~~P~~GqGi~~a~~da~~La~~L~~ 397 (550)
T 2e4g_A 337 HLDPETQPLNRIRFRVGRNRRAWV----GNCVSIGTSS-----------CFVEPLESTGIYFVYAALYQLVKHFPD 397 (550)
T ss_dssp TCCTTTSCCEEEECCCEEESCSEE----TTEEECSTTT-----------EECCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred CcCcccCCCceEEecCCCcccccc----CCEEEEehhh-----------cccCccchhhHHHHHHHHHHHHHhccc
Confidence 33455555666667777765 234 5666666431 222356899999999999999998864
No 34
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=35.29 E-value=71 Score=25.58 Aligned_cols=71 Identities=8% Similarity=-0.107 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCCCCCceeeeeeEEEeecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCc--ch--hHHHHHH
Q 030321 77 ALEELLPKASAIYPGMKNWSFTGARAGLRALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSR--GL--LYHGWFG 152 (179)
Q Consensus 77 ~~~~l~~~~~~~~P~l~~~~i~~~w~G~R~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~--G~--~~ap~~g 152 (179)
..+..++.+.+++| -.+...++.|..=.|.....+...++ ... + |||++..+-.. |+ --|-.+|
T Consensus 329 ~~~~~~~~L~~~~p-~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~-~------gl~laGd~~~~~~g~~~~ga~~sg 396 (421)
T 3nrn_A 329 AIEKGWEELLEIFP-EGEPLLAQVYRDGNPVNRTRAGLHIE----WPL-N------EVLVVGDGYRPPGGIEVDGIALGV 396 (421)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEEEC-------------CCC----CCC-S------SEEECSTTCCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCeEEEeeeccCCCCcccccCCCCCC----CCC-C------cEEEECCcccCCCceeeehHHHHH
Confidence 36777888888999 22222234554332322100001122 112 3 99998755332 34 5677889
Q ss_pred HHHHHHH
Q 030321 153 KLVAQAV 159 (179)
Q Consensus 153 ~~lA~~i 159 (179)
+.+|+.|
T Consensus 397 ~~aA~~l 403 (421)
T 3nrn_A 397 MKALEKL 403 (421)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999988
No 35
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=32.99 E-value=22 Score=30.81 Aligned_cols=53 Identities=13% Similarity=-0.059 Sum_probs=38.2
Q ss_pred CceeeeeeEEEe-ecCCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 94 NWSFTGARAGLR-ALPPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 94 ~~~i~~~w~G~R-~~tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
...+...|.+.. .... ++..+||-.- .....+.|.|+.+|...|..+|+.|..
T Consensus 291 ~~~~~~~~~~~~~~~~~----~rvvLIGDAA-----------h~~~Pl~GqGinlAl~dA~~LA~~L~~ 344 (591)
T 3i3l_A 291 EVRIVQDWSYDTEVFSA----DRFFLCGDAA-----------CFTDPLFSQGVHLASQSAVSAAAAIDR 344 (591)
T ss_dssp CCEEEEEEEEEESCSEE----TTEEECGGGT-----------CBCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEecccccchhhccc----CCEEEEcccc-----------ccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 345667787743 3445 8888888542 233567899999999999999998764
No 36
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=32.37 E-value=1.3e+02 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=24.3
Q ss_pred cEEEEe-ecCCcchhHHHHHHHHHHHHHHc
Q 030321 133 KYWLFG-GLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 133 ~l~~~~-G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
++|++. .++|.|+..|-..|+.+|+.|.+
T Consensus 296 ~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~ 325 (336)
T 3kkj_A 296 GIYVCGDWCLSGRVEGAWLSGQEAARRLLE 325 (336)
T ss_dssp TEEECCGGGTTSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccCCcCHHHHHHHHHHHHHHHHH
Confidence 888774 36788999999999999999864
No 37
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=30.51 E-value=73 Score=26.77 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=37.6
Q ss_pred CCCceeeeeeEEEeec-CCCCCCCCCceeeccCCCCCCcccCcEEEEeecCCcchhHHHHHHHHHHHHHHc
Q 030321 92 MKNWSFTGARAGLRAL-PPMTPNGSPPLLGCVDNLVGTTHACKYWLFGGLGSRGLLYHGWFGKLVAQAVLA 161 (179)
Q Consensus 92 l~~~~i~~~w~G~R~~-tp~~~~D~~PiiG~~~~~~~~~~~~~l~~~~G~g~~G~~~ap~~g~~lA~~i~~ 161 (179)
+....++..|.|.+.. .. ++.-+||-. -....-++|.|+.+|...|..||+.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~----grvvliGDA-----------Ah~~~P~~gqG~~~a~~da~~La~~L~~ 366 (538)
T 2aqj_A 311 NQPLNQIKFRVGRNKRAWV----NNCVSIGLS-----------SCFLEPLESTGIYFIYAALYQLVKHFPD 366 (538)
T ss_dssp TCCCEEEECCCEEESCSEE----TTEEECGGG-----------TEECCGGGSCHHHHHHHHHHHHHHTCCB
T ss_pred CCCceEEeecccccccccc----CCEEEEccc-----------ccccCcchhccHHHHHHHHHHHHHHhhc
Confidence 3445666677776542 23 565566643 2334567899999999999999998864
Done!