BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030323
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 32/182 (17%)
Query: 1 MGLHGQLIDLSSDSLPLLIVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGP---- 56
MGL GQL D+SSDS+PL++++L+A +LRS L L ++NP P
Sbjct: 1 MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRL----------TSKSNPNLPVDDV 50
Query: 57 HVGSGLASLIVLAEQLNKNRAFSYKYNNNNNINKINDNCCCGQGVASSAAGSDCMVCLCT 116
+ SGLA++IVLA+QL+ NR FSY+ GSDC+VCL
Sbjct: 51 SIASGLANIIVLADQLSLNRLFSYR------------------CGDGGGGGSDCVVCLSK 92
Query: 117 LRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176
L++GE VRKL+CRHVFHK CL+GWLH NF CPLCRS +VS++ V T+R VG DLI F
Sbjct: 93 LKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSVGRDLISCF 152
Query: 177 SL 178
SL
Sbjct: 153 SL 154
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 96/156 (61%), Gaps = 36/156 (23%)
Query: 1 MGLHGQLIDLSSDSLPLLIVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGS 60
MGL GQL D+SSDS+PL+++AL+A F ++RSLL P+ V
Sbjct: 1 MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLL----------------FPSSAPVVV 44
Query: 61 GLASLIVLAEQLNKNRAFSYKYNNNNNINKINDNCCCGQGVASSAAGSDCMVCLCTLRDG 120
++L VLA+QLN NR FSY+Y++N A SDC+VCL L+ G
Sbjct: 45 VTSNLSVLADQLNLNRLFSYRYSDN--------------------AASDCIVCLSKLKTG 84
Query: 121 ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
E VRKLDCRHVFHK CL+GWL HLNFNCPLCRSP++
Sbjct: 85 EEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 93 DNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
+ C G SS++ SDC +CL DGE +R + C H FHK C+D WL N CP CR
Sbjct: 185 EGSCGGLDTLSSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQ-NHTCPHCR 243
Query: 153 SPVVSEER 160
++ +++
Sbjct: 244 HNIIEQKK 251
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 102 ASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159
AS ++ C++CL T +G++ RKL C+H FH+ C+D WL N +CPLCR+ V+ +
Sbjct: 758 ASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTTQ 816
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 29 NLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLN-------KNRAFSYK 81
+R+ + LH + + ++P ++ A V L+ L ++L +N +
Sbjct: 210 EIRNYPYPQLHFLALQGLNPSRHTSA---VRESYEELLQLEDRLGNVTRGAVQNTIERFT 266
Query: 82 YNNNNNINKINDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWL 141
+ + + D+ S C +CL L DGE VR+L C H+FH+ C+D WL
Sbjct: 267 FPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL 326
Query: 142 HHLNFNCPLCR 152
++ CP+CR
Sbjct: 327 -AMSKKCPICR 336
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 29 NLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLN-------KNRAFSYK 81
+R+ + LH + + ++P ++ A V L+ L ++L +N +
Sbjct: 209 EIRNYPYPQLHFLALQGLNPSRHTSA---VRESYEELLQLEDRLGNVTRGAVQNTIERFT 265
Query: 82 YNNNNNINKINDNCCCGQGVASSAAGSD----CMVCLCTLRDGELVRKLDCRHVFHKDCL 137
+ + + D G+G SD C +CL L DGE VR+L C H+FH+ C+
Sbjct: 266 FPHKYKKRRPQD----GKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCV 321
Query: 138 DGWLHHLNFNCPLCR 152
D WL ++ CP+CR
Sbjct: 322 DQWL-AMSKKCPICR 335
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 93 DNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWL--HHLNFNCPL 150
+ C SS + SDC +CL DGE +R + C H FH+ C+D WL HH CP
Sbjct: 273 EGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHH---TCPH 329
Query: 151 CRSPVVSEE 159
CR ++ ++
Sbjct: 330 CRHNIIEQK 338
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 937 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 978
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 942 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 983
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 948
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 956
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 943
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 912
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
C +CL L +GE VR+L C H+FH+ C+D WL N CP+CR
Sbjct: 934 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 975
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 95 CCCGQ---GVASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPL 150
C G+ G S+A DC VCL +G+ VR L C H FH +C+D WL + NCPL
Sbjct: 138 ACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRS-HPNCPL 196
Query: 151 CRSPVV 156
CR+ ++
Sbjct: 197 CRTAIL 202
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTR 165
C VC+ DG V+++ C+HVFH+DCL WL L+ +CP+CR + +++ + R
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL-ELHNSCPVCRFELPTDDPDYENR 270
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 100 GVASSAAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158
GVA+SA ++C VCL L++ + R+L +C+H+FH DC+D WL + CP+CR+ V
Sbjct: 100 GVAASA--TECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCS-TCPVCRTEVEPR 156
Query: 159 ERV 161
R+
Sbjct: 157 PRL 159
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 80 YKYNNNNNINK-------INDNCCCGQGVASSAAGSD--CMVCLCTLRDGELVRKLDCRH 130
+++ N+ K I C + S + D C +CLC DG +R+L C H
Sbjct: 299 FRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNH 358
Query: 131 VFHKDCLDGWLHHLNFNCPLCR 152
FH C+D WL H+N CPLC+
Sbjct: 359 HFHCTCIDKWL-HINSRCPLCK 379
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 98 GQGVASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
+G+ +C+VCL +D E +R + C HVFH DC+D WL H + CP+CR+ VV
Sbjct: 73 ARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSS-TCPICRAKVV 131
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 102 ASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPV--VSE 158
+S G DC+VC+ R G+ RKL C HVFH+ C+D WL ++ CP+CR V E
Sbjct: 107 SSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVS-TCPICRDRVYRFEE 165
Query: 159 ERVWNTR 165
R W +
Sbjct: 166 GRRWRPQ 172
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 93 DNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
+ C G SS++ SDC +CL DGE +R + C H FHK C+D WL N CP CR
Sbjct: 249 EGSCGGLDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQ-NHTCPHCR 307
Query: 153 SPVVSEER 160
++ +++
Sbjct: 308 HNIIEQKK 315
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 100 GVASSAAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158
+ S G DC VCL E++R L CRH FH C+D WL + CPLCR V E
Sbjct: 113 ALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQ-HATCPLCRDRVSME 171
Query: 159 E 159
E
Sbjct: 172 E 172
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPV 155
C +CL DG+ +R L C H +H C+D WL CP+C+ PV
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 99 QGVASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
+ V G +C VCLC D E +R + C HVFH DC+D WL + CPLCR+ +V
Sbjct: 124 KAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSE-HSTCPLCRADLV 181
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPV 155
C +CL DG+ +R L C H +H C+D WL CP+C+ PV
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 58 VGSGLASLIVLAEQLNKNRAFSYKYNNNN-------NINKINDNCCCGQGVASSAAGSDC 110
+G GL LI + + NR + + + NI K N N Q C
Sbjct: 175 IGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQ----------C 224
Query: 111 MVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRR 167
VC+ +G +++ C+H++HKDCL WL L+ +CP+CR + +++ + R R
Sbjct: 225 AVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL-ELHNSCPVCRHELPTDDPDYERRVR 280
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPV 155
C +CL DG+ +R L C H +H C+D WL CP+C+ PV
Sbjct: 230 CAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
Query: 103 SSAAGSD---------CMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCR 152
+SAA SD C +CLC ++ E++R + +C+H FH CLD WL LN +CP+CR
Sbjct: 122 TSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWL-KLNGSCPVCR 180
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 79 SYKYNNNNNINKINDNCCCGQGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLD 138
SY++N NN+ + + C+VC+C +L+R L C H FH C+D
Sbjct: 448 SYRFNPNNH----------------QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVD 491
Query: 139 GWLHHLNFNCPLCRS 153
WL N CP+CR+
Sbjct: 492 KWL-KANRTCPICRA 505
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR------SPVVSEE 159
A C VCL +GE VR+L C H+FH C+ WL N +CPLCR SP E
Sbjct: 75 AALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN-SCPLCRHELPTDSPDYEEF 133
Query: 160 RVWNTRRR 167
+ RR+
Sbjct: 134 KQEKARRQ 141
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 104 SAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
S G C VC+ G +R+L C H FH C+D WL N CP+CR PV+
Sbjct: 626 SELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTCPICRQPVL 677
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157
C VC+ +G +RKL C H +H C+D WL N CP+CR V+S
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVLS 592
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 99 QGVASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
Q S G C VC+ G +R+L C H FH C+D WL N CP+CR PV+
Sbjct: 603 QDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSE-NCTCPVCRRPVL 659
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRR 167
++C+VCL +G L+ L C HVFH++C+ WL CP+CR P +++ + ++
Sbjct: 617 TECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQP 676
Query: 168 VGGDL 172
+ D+
Sbjct: 677 LSNDV 681
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRR 167
++C+VCL +G L+ L C HVFH++C+ WL CP+CR P +++ + +
Sbjct: 619 TECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQHQP 678
Query: 168 VGGDL 172
+ D+
Sbjct: 679 LSNDV 683
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 107 GSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPV 155
+C VCL +D E +R + +C H+FH DC+D WL + N NCPLCR+ V
Sbjct: 135 SQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQN-NANCPLCRTRV 183
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRR 167
++C+VCL +G L+ L C HVFH++C+ WL CP+CR P +++ + ++
Sbjct: 616 TECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQP 675
Query: 168 VGGD 171
+ D
Sbjct: 676 LSND 679
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 108 SDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
+DC VCL DGE +R L C H FH+ C+D WL + NCPLCR+ +
Sbjct: 155 TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKS-HSNCPLCRANIT 203
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 102 ASSAAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRS 153
A+ DC++CL +GE V+ + C HVFH DC+D WL CPLCRS
Sbjct: 132 AAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSY-VTCPLCRS 183
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 102 ASSAAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLC 151
+S ++ C +CL +G+ +R + C H FH++C+D WLH + CPLC
Sbjct: 264 SSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQ-HRTCPLC 312
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 101 VASSAAGSD--CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158
+ S G D C VC +G+ R L C+H FH++C+ WL N +CPLCR + ++
Sbjct: 59 IVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTN-SCPLCRYELETD 117
Query: 159 ERVWNTRRRVGGD 171
+ V+ RR D
Sbjct: 118 DPVYEELRRFRQD 130
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 100 GVASSAAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRS 153
G+ + AG++C VCL L + + R L +C+HVFH C+D WL + CP+CR+
Sbjct: 90 GIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQS-TCPVCRT 143
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 108 SDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERV 161
SDC VCL ++ E +R L C H FH C+D WL + NCPLCR+ +V+ V
Sbjct: 157 SDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKS-HSNCPLCRAFIVTSSAV 210
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCR 152
A C VCL +GE VR+L C H+FH C+ WL N +CPLCR
Sbjct: 75 AALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTN-SCPLCR 120
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 98 GQGVASSAAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
G+G+ G++C VCL + E +R L C H FH +C+D WL + NCPLCR+PV+
Sbjct: 126 GEGIID---GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLS-HKNCPLCRAPVL 181
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWL--HHLNFNCPLCRSPVVSEER 160
C +CL DGE +R + C H FHK C+D WL HH CP CR ++ +++
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHH---TCPHCRHNIIDQKK 316
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
C VC+ +G +RKL C H +H C+D WL N CP+CR V+
Sbjct: 585 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVL 630
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 109 DCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157
+C VCL + E R L +C+H FH DC+D W H + CPLCRS V S
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHS-TCPLCRSLVES 166
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
C VC+ +G +RKL C H +H C+D WL N CP+CR V+
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAVL 748
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 110 CMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156
C VC+ +G +RKL C H +H C+D WL N CP+CR V+
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAVL 613
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,942,018
Number of Sequences: 539616
Number of extensions: 2741291
Number of successful extensions: 36424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 34723
Number of HSP's gapped (non-prelim): 1787
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)