Query 030323
Match_columns 179
No_of_seqs 205 out of 1554
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.6 3.1E-16 1.1E-20 104.0 5.0 53 106-159 22-74 (75)
2 2l0b_A E3 ubiquitin-protein li 99.6 1.1E-15 3.8E-20 105.2 6.4 52 105-157 38-89 (91)
3 2ect_A Ring finger protein 126 99.6 1.9E-15 6.5E-20 100.7 5.3 58 105-163 13-70 (78)
4 2kiz_A E3 ubiquitin-protein li 99.6 4.6E-15 1.6E-19 96.6 6.5 53 105-158 12-64 (69)
5 2ep4_A Ring finger protein 24; 99.6 4.3E-15 1.5E-19 98.0 6.3 54 105-159 13-66 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.6 2.3E-15 7.9E-20 93.7 4.1 51 105-156 3-54 (55)
7 2ecm_A Ring finger and CHY zin 99.5 2.7E-14 9.1E-19 88.7 5.2 51 105-156 3-54 (55)
8 3ng2_A RNF4, snurf, ring finge 99.5 1.6E-14 5.5E-19 94.3 3.7 54 105-159 8-65 (71)
9 2ea6_A Ring finger protein 4; 99.4 7.1E-14 2.4E-18 90.5 4.9 52 105-157 13-68 (69)
10 2ecl_A Ring-box protein 2; RNF 99.4 5.3E-14 1.8E-18 94.8 4.4 52 106-158 14-77 (81)
11 2djb_A Polycomb group ring fin 99.4 1.6E-13 5.3E-18 90.2 6.3 52 105-160 13-65 (72)
12 1v87_A Deltex protein 2; ring- 99.4 9.5E-14 3.3E-18 98.8 5.4 53 107-159 25-96 (114)
13 1t1h_A Gspef-atpub14, armadill 99.4 7.4E-14 2.5E-18 92.9 4.3 66 105-175 6-71 (78)
14 1chc_A Equine herpes virus-1 r 99.4 5.9E-14 2E-18 90.9 3.6 50 106-158 4-53 (68)
15 2xeu_A Ring finger protein 4; 99.4 6.2E-14 2.1E-18 89.5 3.5 53 106-159 2-58 (64)
16 2ecy_A TNF receptor-associated 99.4 1.5E-13 5.1E-18 88.7 5.3 52 105-159 13-64 (66)
17 2d8t_A Dactylidin, ring finger 99.4 9.5E-14 3.3E-18 91.0 4.1 50 105-158 13-62 (71)
18 2yur_A Retinoblastoma-binding 99.4 3E-13 1E-17 89.3 5.9 52 105-159 13-66 (74)
19 2ysl_A Tripartite motif-contai 99.4 4.2E-13 1.4E-17 88.0 6.5 52 105-159 18-71 (73)
20 3dpl_R Ring-box protein 1; ubi 99.4 3.3E-13 1.1E-17 95.6 5.3 50 106-156 36-100 (106)
21 2csy_A Zinc finger protein 183 99.4 4.6E-13 1.6E-17 89.8 5.6 48 105-156 13-60 (81)
22 2ecn_A Ring finger protein 141 99.4 1.5E-13 5.2E-18 89.5 2.4 51 105-160 13-63 (70)
23 2ct2_A Tripartite motif protei 99.4 1.4E-12 4.9E-17 88.2 6.9 54 105-158 13-69 (88)
24 4ayc_A E3 ubiquitin-protein li 99.4 2.1E-13 7.1E-18 100.6 2.9 49 107-159 53-101 (138)
25 3fl2_A E3 ubiquitin-protein li 99.3 2.7E-13 9.3E-18 98.0 3.0 67 106-176 51-117 (124)
26 1g25_A CDK-activating kinase a 99.3 7.8E-13 2.7E-17 85.0 4.5 53 107-159 3-57 (65)
27 3lrq_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 94.0 3.1 51 106-159 21-72 (100)
28 2d8s_A Cellular modulator of i 99.3 8.6E-13 3E-17 88.8 4.8 54 105-159 13-72 (80)
29 3ztg_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 89.8 5.2 49 105-156 11-61 (92)
30 2ecw_A Tripartite motif-contai 99.3 2.8E-12 9.6E-17 86.0 7.0 52 105-159 17-73 (85)
31 2egp_A Tripartite motif-contai 99.3 3.8E-13 1.3E-17 89.4 2.5 52 105-159 10-67 (79)
32 2ysj_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 81.4 6.8 44 105-151 18-63 (63)
33 2ecv_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 85.6 6.0 52 105-159 17-73 (85)
34 2ckl_A Polycomb group ring fin 99.3 1.6E-12 5.4E-17 91.8 3.8 49 106-158 14-63 (108)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.7E-17 94.4 3.6 54 105-159 5-62 (133)
36 2ecj_A Tripartite motif-contai 99.3 3.7E-12 1.3E-16 79.7 4.9 44 105-151 13-58 (58)
37 1z6u_A NP95-like ring finger p 99.3 1.2E-12 4.3E-17 97.9 3.1 50 106-158 77-126 (150)
38 3l11_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 96.5 -0.8 50 105-157 13-62 (115)
39 2y43_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 90.2 2.9 49 106-158 21-70 (99)
40 4a0k_B E3 ubiquitin-protein li 99.2 7.1E-13 2.4E-17 95.3 0.5 50 106-156 47-111 (117)
41 2kr4_A Ubiquitin conjugation f 99.2 6.2E-12 2.1E-16 85.4 4.6 66 105-176 12-77 (85)
42 1wgm_A Ubiquitin conjugation f 99.2 1.3E-11 4.6E-16 86.0 5.6 66 105-176 20-86 (98)
43 2kre_A Ubiquitin conjugation f 99.2 1.3E-11 4.4E-16 86.4 5.0 66 105-176 27-92 (100)
44 3hct_A TNF receptor-associated 99.2 7.9E-12 2.7E-16 89.6 3.9 52 105-159 16-67 (118)
45 2ckl_B Ubiquitin ligase protei 99.2 9.6E-12 3.3E-16 94.0 4.5 51 105-158 52-103 (165)
46 1e4u_A Transcriptional repress 99.2 1.5E-11 5.2E-16 82.3 4.7 55 105-160 9-65 (78)
47 1rmd_A RAG1; V(D)J recombinati 99.2 8E-12 2.7E-16 89.1 3.2 51 106-159 22-72 (116)
48 1jm7_A BRCA1, breast cancer ty 99.2 8.1E-12 2.8E-16 88.2 3.0 50 107-159 21-72 (112)
49 4ap4_A E3 ubiquitin ligase RNF 99.1 2.8E-11 9.7E-16 87.4 3.8 54 105-159 70-127 (133)
50 2ct0_A Non-SMC element 1 homol 99.1 4.8E-11 1.6E-15 79.0 3.9 53 105-159 13-66 (74)
51 3knv_A TNF receptor-associated 99.1 1.7E-11 5.7E-16 90.9 1.3 50 105-157 29-78 (141)
52 2c2l_A CHIP, carboxy terminus 99.1 8.2E-11 2.8E-15 94.9 5.0 67 105-176 206-272 (281)
53 1bor_A Transcription factor PM 99.1 2.4E-11 8.1E-16 76.0 1.4 48 105-159 4-51 (56)
54 2vje_A E3 ubiquitin-protein li 99.1 8.4E-11 2.9E-15 75.6 3.3 47 106-156 7-56 (64)
55 2y1n_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 98.8 4.4 50 107-159 332-381 (389)
56 2yu4_A E3 SUMO-protein ligase 99.0 1.8E-10 6.2E-15 79.4 4.2 52 105-159 5-65 (94)
57 1jm7_B BARD1, BRCA1-associated 99.0 3.9E-11 1.3E-15 85.8 0.8 47 106-158 21-68 (117)
58 2vje_B MDM4 protein; proto-onc 99.0 1.7E-10 6E-15 73.8 2.8 49 105-157 5-56 (63)
59 3hcs_A TNF receptor-associated 99.0 2.6E-10 8.8E-15 86.5 3.9 52 105-159 16-67 (170)
60 2f42_A STIP1 homology and U-bo 99.0 3.3E-10 1.1E-14 87.0 3.9 65 106-175 105-169 (179)
61 4ic3_A E3 ubiquitin-protein li 98.9 1.4E-10 4.8E-15 76.5 1.3 45 106-158 23-68 (74)
62 1wim_A KIAA0161 protein; ring 98.8 1.1E-09 3.8E-14 75.2 2.1 53 105-157 3-66 (94)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.8 5.5E-09 1.9E-13 66.3 4.1 50 105-157 4-59 (60)
64 2ea5_A Cell growth regulator w 98.8 8.3E-09 2.8E-13 67.0 4.8 46 105-158 13-59 (68)
65 2ecg_A Baculoviral IAP repeat- 98.7 3.4E-09 1.1E-13 69.9 2.6 45 106-158 24-69 (75)
66 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.4E-09 8.3E-14 89.3 0.5 53 105-157 306-373 (381)
67 2yho_A E3 ubiquitin-protein li 98.7 2.3E-09 7.9E-14 71.6 -0.0 45 107-159 18-63 (79)
68 3htk_C E3 SUMO-protein ligase 98.6 1E-08 3.5E-13 82.8 2.7 53 104-159 178-234 (267)
69 2bay_A PRE-mRNA splicing facto 98.6 2.4E-08 8.1E-13 63.5 2.6 51 107-161 3-54 (61)
70 3t6p_A Baculoviral IAP repeat- 98.5 2E-08 6.9E-13 84.4 1.2 45 106-158 294-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 6.8E-07 2.3E-11 61.7 4.0 50 109-160 3-52 (101)
72 3nw0_A Non-structural maintena 97.8 1.8E-05 6E-10 63.2 4.6 50 106-158 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0044 1.5E-07 42.2 2.9 35 106-140 2-36 (101)
74 2lri_C Autoimmune regulator; Z 94.6 0.034 1.2E-06 35.3 3.5 47 105-155 10-60 (66)
75 2ko5_A Ring finger protein Z; 94.6 0.023 7.9E-07 38.5 2.8 49 105-159 26-75 (99)
76 1we9_A PHD finger family prote 91.9 0.042 1.4E-06 34.3 0.7 50 105-154 4-58 (64)
77 3m62_A Ubiquitin conjugation f 90.5 0.15 5.3E-06 47.7 3.3 66 105-176 889-955 (968)
78 1wep_A PHF8; structural genomi 90.5 0.35 1.2E-05 31.4 4.1 50 105-155 10-64 (79)
79 2lv9_A Histone-lysine N-methyl 89.6 0.13 4.3E-06 35.1 1.5 48 106-154 27-76 (98)
80 2yt5_A Metal-response element- 89.5 0.046 1.6E-06 34.3 -0.8 51 105-155 4-62 (66)
81 2k16_A Transcription initiatio 89.2 0.082 2.8E-06 34.0 0.3 50 106-156 17-70 (75)
82 2l5u_A Chromodomain-helicase-D 88.7 0.27 9.3E-06 30.4 2.4 45 105-153 9-57 (61)
83 2ysm_A Myeloid/lymphoid or mix 88.5 0.14 4.9E-06 35.3 1.1 48 105-152 5-55 (111)
84 1f62_A Transcription factor WS 88.3 0.24 8.3E-06 29.2 2.0 44 109-153 2-49 (51)
85 3lqh_A Histone-lysine N-methyl 86.7 0.26 8.8E-06 37.4 1.7 50 108-157 3-66 (183)
86 1weo_A Cellulose synthase, cat 85.8 1.3 4.5E-05 29.6 4.6 51 106-156 15-69 (93)
87 3v43_A Histone acetyltransfera 85.5 1 3.4E-05 31.1 4.2 47 106-152 4-62 (112)
88 1wil_A KIAA1045 protein; ring 85.0 1.5 5.2E-05 29.0 4.6 32 105-140 13-47 (89)
89 2vpb_A Hpygo1, pygopus homolog 85.0 0.77 2.6E-05 28.7 3.1 34 105-138 6-41 (65)
90 2lbm_A Transcriptional regulat 84.9 1.2 4E-05 32.4 4.4 45 105-153 61-116 (142)
91 1wem_A Death associated transc 84.5 0.45 1.5E-05 30.5 1.9 47 107-155 16-71 (76)
92 3o36_A Transcription intermedi 83.5 0.39 1.3E-05 36.0 1.4 47 106-156 3-53 (184)
93 1mm2_A MI2-beta; PHD, zinc fin 83.2 0.31 1.1E-05 30.1 0.6 48 105-155 7-57 (61)
94 2ri7_A Nucleosome-remodeling f 83.0 0.29 9.9E-06 36.3 0.5 48 105-153 6-58 (174)
95 2yql_A PHD finger protein 21A; 82.1 0.13 4.6E-06 31.1 -1.4 45 105-152 7-54 (56)
96 1xwh_A Autoimmune regulator; P 80.8 0.18 6E-06 31.7 -1.2 47 105-155 6-56 (66)
97 3u5n_A E3 ubiquitin-protein li 80.7 0.53 1.8E-05 36.0 1.2 46 106-155 6-55 (207)
98 3ql9_A Transcriptional regulat 80.1 2.7 9.2E-05 30.0 4.7 44 106-153 56-110 (129)
99 1fp0_A KAP-1 corepressor; PHD 79.2 1 3.4E-05 30.1 2.0 47 105-155 23-73 (88)
100 1wev_A Riken cDNA 1110020M19; 79.1 0.086 2.9E-06 35.2 -3.3 52 106-157 15-75 (88)
101 2kgg_A Histone demethylase jar 78.0 0.84 2.9E-05 27.0 1.3 45 108-152 3-52 (52)
102 1weu_A Inhibitor of growth fam 77.6 2.9 0.0001 27.9 4.0 46 106-155 35-86 (91)
103 1z2q_A LM5-1; membrane protein 75.9 3 0.0001 27.1 3.7 39 101-139 15-54 (84)
104 2puy_A PHD finger protein 21A; 75.4 0.13 4.4E-06 31.7 -3.1 46 106-154 4-52 (60)
105 2cs3_A Protein C14ORF4, MY039 75.2 9.4 0.00032 25.0 5.7 38 105-143 13-52 (93)
106 3v43_A Histone acetyltransfera 74.3 0.88 3E-05 31.4 0.7 45 109-153 63-111 (112)
107 1wew_A DNA-binding family prot 73.1 1.4 4.9E-05 28.3 1.5 49 106-155 15-73 (78)
108 2kwj_A Zinc finger protein DPF 72.8 1.1 3.9E-05 31.0 1.0 33 108-140 2-41 (114)
109 2yw8_A RUN and FYVE domain-con 72.7 2.4 8.1E-05 27.5 2.5 38 102-139 14-52 (82)
110 2l43_A N-teminal domain from h 72.1 7.3 0.00025 25.6 4.9 52 105-156 23-77 (88)
111 1x4u_A Zinc finger, FYVE domai 71.2 4 0.00014 26.5 3.4 38 101-138 8-46 (84)
112 2ku3_A Bromodomain-containing 70.7 5.3 0.00018 25.2 3.8 49 105-153 14-65 (71)
113 1wfk_A Zinc finger, FYVE domai 70.2 4.1 0.00014 26.9 3.3 51 105-155 7-64 (88)
114 1wen_A Inhibitor of growth fam 69.9 3.3 0.00011 26.2 2.7 46 105-155 14-66 (71)
115 3t7l_A Zinc finger FYVE domain 69.2 4.5 0.00015 26.7 3.3 36 105-140 18-54 (90)
116 1joc_A EEA1, early endosomal a 69.0 3.5 0.00012 29.0 2.9 35 105-139 67-102 (125)
117 3i2d_A E3 SUMO-protein ligase 68.7 5.2 0.00018 33.5 4.3 51 107-159 249-302 (371)
118 4fo9_A E3 SUMO-protein ligase 68.0 5.7 0.00019 33.2 4.4 51 107-159 215-268 (360)
119 2e6r_A Jumonji/ARID domain-con 66.8 0.5 1.7E-05 31.7 -1.9 48 105-153 14-65 (92)
120 3asl_A E3 ubiquitin-protein li 65.1 1.2 4E-05 28.2 -0.2 44 109-153 20-68 (70)
121 2e6s_A E3 ubiquitin-protein li 64.8 1.4 4.6E-05 28.6 0.0 45 108-153 27-76 (77)
122 3ask_A E3 ubiquitin-protein li 63.8 1.4 4.9E-05 34.4 -0.0 45 108-153 175-224 (226)
123 1zbd_B Rabphilin-3A; G protein 63.4 3.2 0.00011 29.7 1.8 34 106-139 54-89 (134)
124 2ro1_A Transcription intermedi 63.2 1.3 4.3E-05 33.5 -0.4 46 107-155 2-50 (189)
125 1y02_A CARP2, FYVE-ring finger 62.9 0.32 1.1E-05 34.4 -3.6 47 106-153 18-65 (120)
126 2xb1_A Pygopus homolog 2, B-ce 62.8 4.5 0.00016 27.5 2.4 50 107-156 3-63 (105)
127 1z60_A TFIIH basal transcripti 62.5 2.8 9.7E-05 25.7 1.2 42 108-151 16-58 (59)
128 2cu8_A Cysteine-rich protein 2 61.8 9.2 0.00032 23.6 3.7 42 106-158 8-49 (76)
129 2d8v_A Zinc finger FYVE domain 61.7 4.1 0.00014 25.6 1.8 32 105-140 6-38 (67)
130 3shb_A E3 ubiquitin-protein li 60.7 1.1 3.8E-05 29.0 -1.0 44 109-153 28-76 (77)
131 3mjh_B Early endosome antigen 60.2 2.3 7.8E-05 23.2 0.4 14 107-120 5-18 (34)
132 1vfy_A Phosphatidylinositol-3- 57.6 6.8 0.00023 24.6 2.4 32 107-138 11-43 (73)
133 3mpx_A FYVE, rhogef and PH dom 57.6 2.2 7.4E-05 35.8 0.0 52 104-155 372-430 (434)
134 2d8z_A Four and A half LIM dom 57.2 13 0.00046 22.4 3.8 40 107-158 5-44 (70)
135 1iml_A CRIP, cysteine rich int 53.4 6.3 0.00022 24.5 1.7 12 108-119 28-39 (76)
136 4gne_A Histone-lysine N-methyl 53.1 12 0.00041 25.6 3.2 47 105-157 13-65 (107)
137 1dvp_A HRS, hepatocyte growth 52.3 6.4 0.00022 30.1 1.9 33 107-139 161-194 (220)
138 1g47_A Pinch protein; LIM doma 51.9 15 0.00052 22.5 3.4 43 106-158 10-52 (77)
139 1x64_A Alpha-actinin-2 associa 51.1 32 0.0011 21.8 5.1 42 106-159 24-65 (89)
140 2d8x_A Protein pinch; LIM doma 50.3 11 0.00039 22.8 2.5 41 106-158 4-44 (70)
141 2a20_A Regulating synaptic mem 50.3 11 0.00037 23.2 2.3 36 105-140 7-43 (62)
142 3zyq_A Hepatocyte growth facto 50.2 7.3 0.00025 30.1 2.0 34 106-139 163-197 (226)
143 1x62_A C-terminal LIM domain p 50.1 18 0.00061 22.5 3.6 39 106-156 14-52 (79)
144 1wee_A PHD finger family prote 49.9 10 0.00035 23.7 2.3 48 106-154 15-66 (72)
145 2zet_C Melanophilin; complex, 49.2 9.4 0.00032 27.8 2.3 47 106-153 67-116 (153)
146 2dar_A PDZ and LIM domain prot 48.7 16 0.00055 23.4 3.3 41 106-158 24-64 (90)
147 2cor_A Pinch protein; LIM doma 48.2 17 0.0006 22.7 3.3 41 106-158 14-54 (79)
148 1nyp_A Pinch protein; LIM doma 47.7 18 0.00061 21.5 3.2 40 107-158 5-44 (66)
149 2o35_A Hypothetical protein DU 47.1 7.6 0.00026 26.4 1.4 13 131-143 42-54 (105)
150 2cur_A Skeletal muscle LIM-pro 47.1 13 0.00043 22.4 2.4 40 106-157 4-43 (69)
151 3fyb_A Protein of unknown func 47.0 7.6 0.00026 26.3 1.4 13 131-143 41-53 (104)
152 1x61_A Thyroid receptor intera 46.4 24 0.00081 21.3 3.6 40 107-156 5-44 (72)
153 2vnf_A ING 4, P29ING4, inhibit 46.1 2.7 9.2E-05 25.6 -0.9 43 106-153 9-58 (60)
154 1zfo_A LAsp-1; LIM domain, zin 44.9 5.3 0.00018 20.8 0.3 27 108-136 4-30 (31)
155 1x4l_A Skeletal muscle LIM-pro 44.1 23 0.00078 21.4 3.3 42 106-157 4-47 (72)
156 1x4k_A Skeletal muscle LIM-pro 43.4 30 0.001 20.8 3.8 42 107-158 5-46 (72)
157 3c6w_A P28ING5, inhibitor of g 43.0 3.5 0.00012 25.1 -0.8 43 106-153 8-57 (59)
158 2dj7_A Actin-binding LIM prote 43.0 32 0.0011 21.5 3.9 40 106-156 14-53 (80)
159 1wig_A KIAA1808 protein; LIM d 42.3 20 0.00069 22.0 2.8 38 107-156 5-42 (73)
160 1wyh_A SLIM 2, skeletal muscle 41.0 34 0.0012 20.5 3.7 42 107-158 5-46 (72)
161 2jvx_A NF-kappa-B essential mo 39.8 4.4 0.00015 21.0 -0.5 14 145-158 3-16 (28)
162 2co8_A NEDD9 interacting prote 39.5 25 0.00085 22.1 3.0 43 106-159 14-56 (82)
163 3o70_A PHD finger protein 13; 39.3 14 0.00048 22.9 1.7 47 105-153 17-66 (68)
164 3a1b_A DNA (cytosine-5)-methyl 38.9 30 0.001 25.4 3.6 44 105-152 77-132 (159)
165 3o7a_A PHD finger protein 13 v 38.6 3.6 0.00012 24.1 -1.2 41 112-153 8-51 (52)
166 1x63_A Skeletal muscle LIM-pro 37.7 38 0.0013 20.9 3.7 42 107-158 15-56 (82)
167 1wd2_A Ariadne-1 protein homol 37.2 11 0.00037 22.9 0.8 20 140-159 1-20 (60)
168 1x68_A FHL5 protein; four-and- 34.7 41 0.0014 20.5 3.4 42 107-158 5-48 (76)
169 3f6q_B LIM and senescent cell 34.7 26 0.00089 20.9 2.4 42 107-158 11-52 (72)
170 2jne_A Hypothetical protein YF 34.2 13 0.00043 25.2 0.9 41 107-156 32-72 (101)
171 1zza_A Stannin, AG8_1; helix, 33.2 94 0.0032 19.7 5.9 38 11-50 10-47 (90)
172 1m3v_A FLIN4, fusion of the LI 32.8 27 0.00094 23.7 2.5 53 107-161 32-85 (122)
173 1v6g_A Actin binding LIM prote 32.8 26 0.00088 21.8 2.2 40 108-159 16-55 (81)
174 2d8y_A Eplin protein; LIM doma 31.5 43 0.0015 21.3 3.2 41 107-158 15-55 (91)
175 2cuq_A Four and A half LIM dom 31.4 34 0.0012 21.0 2.6 40 107-158 15-54 (80)
176 2cup_A Skeletal muscle LIM-pro 31.2 60 0.0021 20.8 4.0 47 107-158 33-79 (101)
177 2gmg_A Hypothetical protein PF 30.1 11 0.00038 25.8 0.0 28 125-158 70-97 (105)
178 2pv0_B DNA (cytosine-5)-methyl 29.4 38 0.0013 28.4 3.2 46 105-153 91-147 (386)
179 2jrp_A Putative cytoplasmic pr 28.5 24 0.00082 22.9 1.4 11 108-118 3-13 (81)
180 1a7i_A QCRP2 (LIM1); LIM domai 28.3 19 0.00067 22.4 1.0 41 107-158 7-47 (81)
181 1x6a_A LIMK-2, LIM domain kina 27.9 37 0.0013 20.9 2.3 38 108-157 16-53 (81)
182 2dlo_A Thyroid receptor-intera 27.1 33 0.0011 21.3 1.9 40 107-158 15-54 (81)
183 1x3h_A Leupaxin; paxillin fami 27.0 33 0.0011 21.1 1.9 40 107-158 15-54 (80)
184 2l4z_A DNA endonuclease RBBP8, 26.8 40 0.0014 23.1 2.5 40 106-156 60-99 (123)
185 2jtn_A LIM domain-binding prot 25.8 1.6E+02 0.0054 21.2 5.8 14 145-158 119-132 (182)
186 3kqi_A GRC5, PHD finger protei 25.1 64 0.0022 20.0 3.1 47 107-154 10-61 (75)
187 3kv4_A PHD finger protein 8; e 24.8 13 0.00044 31.9 -0.5 49 108-156 5-58 (447)
188 1r79_A Diacylglycerol kinase, 24.6 1.1E+02 0.0038 19.7 4.2 40 107-150 38-80 (84)
189 2egq_A FHL1 protein; LIM domai 24.4 49 0.0017 20.1 2.4 42 107-158 15-59 (77)
190 2rsd_A E3 SUMO-protein ligase 24.4 26 0.00088 21.5 1.0 46 106-153 9-64 (68)
191 2l3k_A Rhombotin-2, linker, LI 23.9 39 0.0013 22.9 2.0 45 106-154 35-79 (123)
192 2pk7_A Uncharacterized protein 23.9 20 0.00068 22.5 0.4 12 145-156 8-19 (69)
193 2jmo_A Parkin; IBR, E3 ligase, 23.6 5.3 0.00018 25.7 -2.5 14 127-140 55-68 (80)
194 2i5o_A DNA polymerase ETA; zin 22.9 19 0.00066 20.0 0.2 17 146-162 10-26 (39)
195 2kdx_A HYPA, hydrogenase/ureas 22.2 42 0.0015 22.8 1.9 25 124-155 75-100 (119)
196 2csz_A Synaptotagmin-like prot 22.1 43 0.0015 21.4 1.7 33 105-137 23-57 (76)
197 2k5c_A Uncharacterized protein 21.5 23 0.00078 23.2 0.3 26 145-170 51-76 (95)
198 2xqn_T Testin, TESS; metal-bin 21.3 73 0.0025 21.3 3.0 47 107-158 30-76 (126)
199 2xjy_A Rhombotin-2; oncoprotei 21.2 59 0.002 22.0 2.5 49 107-157 29-78 (131)
200 1rut_X Flinc4, fusion protein 21.1 66 0.0023 23.5 2.9 38 109-156 71-108 (188)
201 3kv5_D JMJC domain-containing 20.7 66 0.0023 27.7 3.2 48 106-154 36-88 (488)
202 2ljb_A M2 protein, BM2 protein 20.2 1.1E+02 0.0039 16.3 3.2 25 14-38 6-30 (35)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-16 Score=104.01 Aligned_cols=53 Identities=38% Similarity=0.971 Sum_probs=48.0
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
++..|+||++.+..++.++.+||+|.||..|+.+|+.. +.+||+||.++.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPSS 74 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCCC
Confidence 46799999999999988899999999999999999997 789999999987643
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=105.24 Aligned_cols=52 Identities=31% Similarity=0.786 Sum_probs=46.9
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
.++..|+||++.+..++.++.+||+|.||..|+..|+.. +.+||+||.++.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 356799999999998888889999999999999999986 7799999998865
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=1.9e-15 Score=100.72 Aligned_cols=58 Identities=36% Similarity=0.847 Sum_probs=50.4
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhh
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWN 163 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 163 (179)
..+..|+||++.|..++.+..++|+|.||..|+..|+.. +.+||+||..+...+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 457899999999998888888999999999999999986 7899999999987664433
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=96.61 Aligned_cols=53 Identities=42% Similarity=1.007 Sum_probs=47.2
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
..+..|+||++.+..++.+..++|+|.||..|+..|+.. +.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 456799999999988778888999999999999999997 77899999988654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=98.02 Aligned_cols=54 Identities=33% Similarity=0.751 Sum_probs=48.2
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.++..|+||++.+..+..+..++|+|.||..|+.+|+.. +.+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 457799999999999888888999999999999999997 679999999987544
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.56 E-value=2.3e-15 Score=93.71 Aligned_cols=51 Identities=51% Similarity=1.056 Sum_probs=45.6
Q ss_pred cCCcccccccccccCCCceEEeC-CCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
+++.+|+||++.+..++....++ |+|.||..|+.+|+.. +.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 34679999999999888888887 9999999999999986 789999999874
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=2.7e-14 Score=88.75 Aligned_cols=51 Identities=29% Similarity=0.834 Sum_probs=43.4
Q ss_pred cCCcccccccccccCC-CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 105 AAGSDCMVCLCTLRDG-ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~-~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
.++..|+||++.+.++ +....++|+|.||..|+.+|+.. +.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 3567999999998654 34677899999999999999997 689999999874
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.48 E-value=1.6e-14 Score=94.25 Aligned_cols=54 Identities=26% Similarity=0.645 Sum_probs=45.8
Q ss_pred cCCcccccccccccCC----CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDG----ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.++..|+||++.+.++ +....++|||.||..|+.+|+.. +.+||+||.++..++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 4578999999998764 44577899999999999999997 779999999987654
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.1e-14 Score=90.49 Aligned_cols=52 Identities=27% Similarity=0.660 Sum_probs=44.1
Q ss_pred cCCcccccccccccCC----CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDG----ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
.+...|+||++.+.++ .....++|+|.||..|+..|+.. +.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4578999999998764 33467899999999999999997 7899999998854
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.3e-14 Score=94.78 Aligned_cols=52 Identities=31% Similarity=0.767 Sum_probs=40.8
Q ss_pred CCcccccccccccC-----------CCceEEeC-CCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRD-----------GELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~-----------~~~~~~lp-C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
++.+|+||++.|.. ++.++.++ |+|.||..||.+|+.. +.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 35667777777744 44456665 9999999999999997 77999999988654
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=90.16 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=45.4
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEER 160 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 160 (179)
.+...|+||++.+.++ ..+ +|+|.||..|+..|+.. +..||+||.++...+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence 4578999999999887 666 89999999999999987 7899999999876653
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.44 E-value=9.5e-14 Score=98.84 Aligned_cols=53 Identities=26% Similarity=0.601 Sum_probs=42.6
Q ss_pred CcccccccccccCCC---------------ceEEeCCCCcchHHhHHHHHhc----CCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGE---------------LVRKLDCRHVFHKDCLDGWLHH----LNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~----~~~~CP~Cr~~~~~~~ 159 (179)
+..|+||++.|..+. .+..++|+|.||..||..|+.. .+.+||+||..+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 569999999997653 3346789999999999999952 2568999999886553
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.43 E-value=7.4e-14 Score=92.91 Aligned_cols=66 Identities=12% Similarity=0.317 Sum_probs=51.3
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQW 175 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 175 (179)
.++..|+||++.+.++ ..++|||.||..||..|+...+.+||+||.++...+.. .+..+...+..|
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~--~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT--PNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE--ECTTTHHHHHHH
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc--cCHHHHHHHHHH
Confidence 4578999999999988 77899999999999999986577899999998765422 233344444444
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.43 E-value=5.9e-14 Score=90.93 Aligned_cols=50 Identities=34% Similarity=0.770 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
.+..|+||++.+.++ ...++|||.||..|+..|+.. +.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 467999999998764 466799999999999999987 78999999998654
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=6.2e-14 Score=89.47 Aligned_cols=53 Identities=28% Similarity=0.647 Sum_probs=44.9
Q ss_pred CCcccccccccccCC----CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDG----ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
++.+|+||++.+.++ +....++|||.||..|+.+|+.. +.+||+||.++..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 357999999998754 44567899999999999999997 789999999987654
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=88.71 Aligned_cols=52 Identities=21% Similarity=0.571 Sum_probs=44.5
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ ..++|||.||..|+..|+...+..||+||.++..++
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4578999999999888 557999999999999999654678999999987643
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.5e-14 Score=90.96 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=43.9
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
.++..|+||++.+.++ ..++|+|.||..|+..|+.. +.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 4578999999999877 77899999999999999986 68999999988643
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=89.35 Aligned_cols=52 Identities=21% Similarity=0.554 Sum_probs=44.6
Q ss_pred cCCcccccccccccCCCceEEeC-CCCcchHHhHHHHHhcCC-CCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLN-FNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~-~~CP~Cr~~~~~~~ 159 (179)
.++..|+||++.+.++ ..++ |||.||..||..|+.... ..||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4578999999999988 7799 999999999999998632 68999999876544
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=87.98 Aligned_cols=52 Identities=29% Similarity=0.613 Sum_probs=44.1
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc--CCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH--LNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ ..++|||.||..|+..|+.. .+..||+||.++..++
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4578999999999876 77899999999999999973 3568999999986543
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.39 E-value=3.3e-13 Score=95.55 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=42.0
Q ss_pred CCcccccccccccCCC---------------ceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGE---------------LVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
++..|+||++.|..+- .+..++|+|.||..||.+|+.. +.+||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4678999999987541 2566789999999999999997 889999999864
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-13 Score=89.77 Aligned_cols=48 Identities=21% Similarity=0.533 Sum_probs=43.0
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
.....|+||++.+.++ ..++|+|.||..|+..|+.. ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 4567999999999887 67899999999999999987 789999999985
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=89.54 Aligned_cols=51 Identities=29% Similarity=0.800 Sum_probs=44.3
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEER 160 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 160 (179)
.+...|+||++.+.+ ..++|+|.||..|+..|+.. +.+||+||.++...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCc
Confidence 456899999999876 67899999999999999985 7899999999876654
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=88.24 Aligned_cols=54 Identities=22% Similarity=0.607 Sum_probs=45.2
Q ss_pred cCCcccccccccccCCCc-eEEeCCCCcchHHhHHHHHhcC--CCCCCCccCCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDGWLHHL--NFNCPLCRSPVVSE 158 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~wl~~~--~~~CP~Cr~~~~~~ 158 (179)
.+...|+||++.+.+.+. ...++|||.||..|+..|+... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456899999999988543 4778999999999999999873 36899999988654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=2.1e-13 Score=100.57 Aligned_cols=49 Identities=27% Similarity=0.846 Sum_probs=43.6
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
+..|+||++.+.++ +.+||||.||..|+..|+.. +.+||+||.++....
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 46899999999887 78899999999999999986 789999999987554
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=98.04 Aligned_cols=67 Identities=25% Similarity=0.434 Sum_probs=51.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
++..|+||++.+.++ ..++|||.||..|+..|+......||+||.++.... ....+..+...+..||
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY-AMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC-CCCCCHHHHHHHHHHS
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCC-CCCCCHHHHHHHHHHc
Confidence 457899999999987 778999999999999999864569999999997632 2233444444445554
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=7.8e-13 Score=85.00 Aligned_cols=53 Identities=25% Similarity=0.493 Sum_probs=43.7
Q ss_pred Ccccccccc-cccCCCce-EEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLC-TLRDGELV-RKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~-~~~~~~~~-~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
+..|+||++ .+.++... ..++|||.||..|+..|+...+..||+||.++...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 578999999 78777543 346899999999999998765678999999987654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=94.02 Aligned_cols=51 Identities=31% Similarity=0.767 Sum_probs=44.2
Q ss_pred CCcccccccccccCCCceEE-eCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDGELVRK-LDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~-lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
++..|+||++.+.++ +. ++|||.||..||..|+...+..||+||.++...+
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 467999999999887 66 7899999999999999974479999999986544
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.6e-13 Score=88.82 Aligned_cols=54 Identities=26% Similarity=0.692 Sum_probs=44.6
Q ss_pred cCCcccccccccccCCCceEEeCCC-----CcchHHhHHHHHhcCC-CCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCR-----HVFHKDCLDGWLHHLN-FNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~~~-~~CP~Cr~~~~~~~ 159 (179)
.++..|.||++++..++.+ .+||+ |.||..||++|+...+ .+||+||..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567999999998766655 58996 9999999999998633 58999999987654
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=89.76 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=43.0
Q ss_pred cCCcccccccccccCCCceEEeC-CCCcchHHhHHHHHhcC-CCCCCCccCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHL-NFNCPLCRSPVV 156 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~ 156 (179)
.++..|+||++.|.++ ..++ |||.||..||..|+... ...||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4578999999999988 7889 99999999999999753 368999999974
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=2.8e-12 Score=85.97 Aligned_cols=52 Identities=29% Similarity=0.619 Sum_probs=44.8
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcC-----CCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHL-----NFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-----~~~CP~Cr~~~~~~~ 159 (179)
.++..|+||++.+.++ ..++|+|.||..|+..|+... ...||+||..+..++
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 4577999999999888 678999999999999999863 568999999987653
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-13 Score=89.38 Aligned_cols=52 Identities=25% Similarity=0.539 Sum_probs=44.4
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcC------CCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHL------NFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~------~~~CP~Cr~~~~~~~ 159 (179)
.++..|+||++.+.++ ..++|||.||..|+..|+... ...||+||.++...+
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 4578999999999887 668999999999999999752 568999999987643
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=81.45 Aligned_cols=44 Identities=32% Similarity=0.671 Sum_probs=38.7
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc--CCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH--LNFNCPLC 151 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~~~CP~C 151 (179)
.++..|+||++.+.++ ..++|||.||..|+..|+.. .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4578999999999988 77899999999999999984 35689998
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=85.59 Aligned_cols=52 Identities=31% Similarity=0.626 Sum_probs=44.4
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc-----CCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH-----LNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-----~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ ..++|+|.||..|+..|+.. ....||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4578999999999887 66799999999999999975 2578999999987644
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.6e-12 Score=91.80 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=43.6
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
++..|+||++.+.++ ..+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 467999999999887 666 89999999999999986 68999999998765
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.28 E-value=1.4e-12 Score=94.40 Aligned_cols=54 Identities=26% Similarity=0.645 Sum_probs=46.0
Q ss_pred cCCcccccccccccCC----CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDG----ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.++.+|+||++.+.++ +....++|||.||..||.+|+.. +.+||+||..+...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccc
Confidence 4578999999998764 45577899999999999999986 779999999987654
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.7e-12 Score=79.66 Aligned_cols=44 Identities=34% Similarity=0.931 Sum_probs=37.9
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc--CCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH--LNFNCPLC 151 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~~~CP~C 151 (179)
.+...|+||++.+.++ ..++|+|.||..|+..|+.. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999999888 66899999999999999653 36789998
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.2e-12 Score=97.92 Aligned_cols=50 Identities=26% Similarity=0.544 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
+...|+||++.+.++ ..++|||.||..||..|+......||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457999999999887 77899999999999999997456899999999765
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=3e-13 Score=96.49 Aligned_cols=50 Identities=28% Similarity=0.682 Sum_probs=44.3
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
.++..|+||++.+.++ ..++|||.||..|+..|+...+..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4578999999999988 7789999999999999997656789999999864
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=90.19 Aligned_cols=49 Identities=20% Similarity=0.499 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
+...|+||++.+.++ ..+ +|||.||..|+..|+.. +.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChh
Confidence 457999999999886 666 89999999999999986 78999999998754
No 40
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=7.1e-13 Score=95.34 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=1.0
Q ss_pred CCcccccccccccCCC---------------ceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGE---------------LVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
++..|+||++.|..+. .+..++|+|.||..||.+|+.. +.+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4579999999987531 1223479999999999999997 789999999864
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=6.2e-12 Score=85.41 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=52.3
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
.++..|+||++.+.++ .+++|||.|++.||..|+.. +.+||+||.++...+. ..+..+...+..|-
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l--~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESML--EPVPELKEQIQAWM 77 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGC--EECHHHHHHHHHHH
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhc--chHHHHHHHHHHHH
Confidence 4578999999999999 88899999999999999996 7899999999876542 23334444555553
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.22 E-value=1.3e-11 Score=85.98 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=52.4
Q ss_pred cCCcccccccccccCCCceEEeCCC-CcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCR-HVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
.++..|+||++.|.+| ++++|| |.|++.||..|+.. +.+||+||.++...+.. .+..+...+..|.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~--pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR--PNTELKEKIQRWL 86 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE--ECHHHHHHHHHHH
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhce--EcHHHHHHHHHHH
Confidence 4578999999999999 888999 99999999999986 78999999999765432 3334444555553
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.21 E-value=1.3e-11 Score=86.41 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=52.5
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
.++..|+||++.|.+| .+++|||.|++.||..|+.. +.+||+||.++...+.. .+..+...+..|.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~--pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE--PVPELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE--ECHHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce--ECHHHHHHHHHHH
Confidence 4578999999999999 88899999999999999985 78999999999765432 2333444555553
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.20 E-value=7.9e-12 Score=89.63 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=45.0
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ ..++|||.||..|+..|+...+.+||+||.++...+
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4568999999999887 778999999999999999874559999999987643
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.20 E-value=9.6e-12 Score=94.04 Aligned_cols=51 Identities=33% Similarity=0.644 Sum_probs=43.8
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
.+...|+||++.+.++ ..+ +|||.||..|+..|+...+..||+||.++...
T Consensus 52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 3567999999999886 555 89999999999999996577899999998643
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.5e-11 Score=82.27 Aligned_cols=55 Identities=20% Similarity=0.436 Sum_probs=42.7
Q ss_pred cCCcccccccccccCCCceEEe--CCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL--DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEER 160 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 160 (179)
.++.+|+||++.+...+. ..+ +|||.||..|+..++...+..||.||+++..+..
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 457899999998854322 234 4999999999999876556789999999876543
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=8e-12 Score=89.15 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=44.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
++..|+||++.+.++ ..++|||.||..|+..|+...+.+||+||.++...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 467999999999887 668999999999999999875678999999987654
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=8.1e-12 Score=88.25 Aligned_cols=50 Identities=26% Similarity=0.673 Sum_probs=42.8
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCC--CCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLN--FNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~--~~CP~Cr~~~~~~~ 159 (179)
...|+||++.+.++ ..++|||.||..|+..|+.... ..||+||.++...+
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 56899999999887 6679999999999999998522 48999999987654
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.8e-11 Score=87.39 Aligned_cols=54 Identities=26% Similarity=0.645 Sum_probs=45.0
Q ss_pred cCCcccccccccccCC----CceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDG----ELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+..+ .....++|||.||..|+++|+.. +.+||+||.++..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhc
Confidence 3567899999998753 33467789999999999999997 789999999987654
No 50
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=4.8e-11 Score=79.01 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=42.2
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcC-CCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHL-NFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~ 159 (179)
+....|+||.+.+..++ +...|+|.||..||.+|++.. +.+||+||.+...+.
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34679999999998662 233699999999999999863 278999999876543
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.09 E-value=1.7e-11 Score=90.87 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=43.5
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
.++..|+||++.+.++ .+++|||.||..||..|+.....+||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3578999999999988 7789999999999999998745689999998643
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=8.2e-11 Score=94.90 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=52.5
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
.....|+||++.+.+| +++||||.||+.||..|+...+.+||+||.++...+. ..+..+...+..|.
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l--~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL--IPNLAMKEVIDAFI 272 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC--EECHHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC--cccHHHHHHHHHHH
Confidence 4578999999999999 8889999999999999998755569999999965442 23444445555554
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=2.4e-11 Score=76.02 Aligned_cols=48 Identities=23% Similarity=0.559 Sum_probs=40.8
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ +.++|+|.||..|+..| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 3567999999999988 77899999999999873 668999999886543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=8.4e-11 Score=75.55 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCceEEe--CCCCc-chHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL--DCRHV-FHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l--pC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
++..|+||++...+. ..+ ||||. ||..|+..|... +..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 467999999987665 555 99999 899999999985 779999999885
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.03 E-value=1.3e-10 Score=98.83 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=43.3
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
...|+||++.+.++ ..+||||.||..|+..|+...+.+||+||.++....
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 46999999998776 778999999999999999854789999999887543
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=79.44 Aligned_cols=52 Identities=17% Similarity=0.466 Sum_probs=43.1
Q ss_pred cCCcccccccccccCCCceEEeC-CCCcchHHhHHHHHhcC-----CCCCCC--ccCC-CCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHL-----NFNCPL--CRSP-VVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~-----~~~CP~--Cr~~-~~~~~ 159 (179)
..+..|+||++.|.+| ++++ |||.|++.||..|+... ..+||+ |+.. +...+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 4578999999999998 7886 99999999999999852 358999 9876 54433
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=3.9e-11 Score=85.81 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
+...|+||++.+.++ ..+ +|||.||..|+..|+. ..||+||.++...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccc
Confidence 467999999999988 777 8999999999999976 6899999998654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=1.7e-10 Score=73.83 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=40.7
Q ss_pred cCCcccccccccccCCCceEEe--CCCCc-chHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL--DCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l--pC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
.....|+||++...+. ..+ ||||. ||..|+..|... +..||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 3467999999987665 455 99999 999999999876 6799999998853
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.98 E-value=2.6e-10 Score=86.47 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=45.2
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
.+...|+||++.+.++ ..++|||.||..|+..|+...+.+||+||.++...+
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 4578999999999988 678999999999999999864569999999987653
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=3.3e-10 Score=87.02 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=50.5
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQW 175 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 175 (179)
+...||||++.|.+| +++||||.|++.||..|+...+.+||+|+.++...+... +..+...+..|
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p--N~~Lk~~Ie~~ 169 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP--NLAMKEVIDAF 169 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE--CHHHHHHHHHH
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc--hHHHHHHHHHH
Confidence 578999999999998 888999999999999999864457999999987654332 33344444444
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.95 E-value=1.4e-10 Score=76.51 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=38.8
Q ss_pred CCcccccccccccCCCceEEeCCCCc-chHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
++..|+||++.+.++ ..+||||. ||..|+..| ..||+||.++...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 357899999998776 77899999 999999987 6899999988643
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.1e-09 Score=75.20 Aligned_cols=53 Identities=23% Similarity=0.595 Sum_probs=41.4
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcC-------CCCCCC--ccCC--CCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHL-------NFNCPL--CRSP--VVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-------~~~CP~--Cr~~--~~~ 157 (179)
.+..+|+||++.+..++.+...+|+|.||..|+..++... ...||. |+.. +.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 3467999999998876555545799999999999988641 247999 9988 543
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=5.5e-09 Score=66.27 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=38.5
Q ss_pred cCCcccccccccccCCCceEEeCCC--C---cchHHhHHHHHhc-CCCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCR--H---VFHKDCLDGWLHH-LNFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~--H---~fh~~Ci~~wl~~-~~~~CP~Cr~~~~~ 157 (179)
++...|.||++...++ ..+||. + .||..|+.+|+.. .+.+||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~~~---l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCc---eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567999999984332 357865 4 8999999999985 35789999998753
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=8.3e-09 Score=66.97 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=38.7
Q ss_pred cCCcccccccccccCCCceEEeCCCCc-chHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
.+...|.||++...+. ..+||+|. ||..|+.. ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 4567999999987765 77899999 99999983 46899999988654
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=69.89 Aligned_cols=45 Identities=20% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCceEEeCCCCc-chHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
++..|+||++.+.++ ..+||||. ||..|+.. ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 356899999998776 67899999 99999963 46899999988653
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.69 E-value=2.4e-09 Score=89.35 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=40.2
Q ss_pred cCCcccccccccccCCCce-----EEeCCCCcchHHhHHHHHhcCC----------CCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELV-----RKLDCRHVFHKDCLDGWLHHLN----------FNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~-----~~lpC~H~fh~~Ci~~wl~~~~----------~~CP~Cr~~~~~ 157 (179)
++..+|+||++.+.+...+ ...+|+|.||..|+.+|+.+.. ..||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4678999999998763222 1235999999999999997521 369999998753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.67 E-value=2.3e-09 Score=71.63 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=38.0
Q ss_pred CcccccccccccCCCceEEeCCCCc-chHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
+..|+||++.+.+. ..+||||. ||..|+..| ..||+||.++....
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeE
Confidence 56899999987765 77899999 999999865 39999999887553
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1e-08 Score=82.79 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=44.1
Q ss_pred CcCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcC-CCCCCC--ccCCCCCCc
Q 030323 104 SAAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHL-NFNCPL--CRSPVVSEE 159 (179)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~-~~~CP~--Cr~~~~~~~ 159 (179)
...+..||||++.|.+| ++. .|||.|++.||..|+... ...||+ |+..+...+
T Consensus 178 ~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 35678999999999998 554 899999999999999752 357999 999886655
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=2.4e-08 Score=63.49 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=43.9
Q ss_pred CcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcch
Q 030323 107 GSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERV 161 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 161 (179)
...|+||++.+.++ ..+ ++||.|.+.||.+|+.. +.+||+.+.++..++..
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcE
Confidence 36899999999988 777 79999999999999987 66899999999776543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=2e-08 Score=84.40 Aligned_cols=45 Identities=22% Similarity=0.583 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCceEEeCCCCc-chHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHV-FHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
++..|+||++.+.++ ..+||||. ||..|+..| ..||+||.++...
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 467999999998876 77899999 999999987 5899999988643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.27 E-value=6.8e-07 Score=61.73 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=39.7
Q ss_pred ccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcc
Q 030323 109 DCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEER 160 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 160 (179)
-|++|--.+.. ..+..||+|+||.+|+..|..+...+||.|+.++..-+.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47777766543 347889999999999999987767899999998865443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.80 E-value=1.8e-05 Score=63.19 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCceEEeC-CCCcchHHhHHHHHhcC-CCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHL-NFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~ 158 (179)
....|.||.+....+ ...+ |+|.||..|+..|+... +..||.|+.+.+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 367999999998876 4444 99999999999999753 35899999877554
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.97 E-value=0.0044 Score=42.19 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHH
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGW 140 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~w 140 (179)
++..|+||.+.+..+.....++|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999987443334445889999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.58 E-value=0.034 Score=35.26 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=33.1
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhcC---CCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHL---NFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~---~~~CP~Cr~~~ 155 (179)
.....|.||.+. ++ +..- .|...||..|+.+.+... .-.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 456789999853 32 3333 499999999999877642 34799997643
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.56 E-value=0.023 Score=38.53 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=38.6
Q ss_pred cCCcccccccccccCCCceEEeCC-CCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDC-RHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC-~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
-+...|-.|+-..+. .+.| .|.+|..|+...+.. ...||+|+.+++.+-
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcce
Confidence 457799999976542 3446 699999999998876 778999999998654
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.90 E-value=0.042 Score=34.27 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=34.6
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHh----cCCCCCCCccCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----HLNFNCPLCRSP 154 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----~~~~~CP~Cr~~ 154 (179)
.+...|++|...+.+....+.- .|..-||..|+.--.. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4577899999887544444444 4999999999874321 124679999653
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.49 E-value=0.15 Score=47.74 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=51.5
Q ss_pred cCCcccccccccccCCCceEEeCCC-CcchHHhHHHHHhcCCCCCCCccCCCCCCcchhhhhhhcccchhhcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCR-HVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWF 176 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~ 176 (179)
.++..|||-++.+.+| +++|-| +.|-+.+|.+|+.. +.+||.=|.++...+..++ ..+-..+..|.
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN--~~Lk~~I~~w~ 955 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN--EELRQKILCFK 955 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC--HHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc--HHHHHHHHHHH
Confidence 3567899999999999 889987 68999999999997 7899999999976554333 23334555664
No 78
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.46 E-value=0.35 Score=31.38 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=32.7
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHh----cCCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----HLNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~ 155 (179)
.+...| ||..........+.- .|..-||..|+.--.. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345566 999877534444444 4998999999963211 1256899998754
No 79
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=89.59 E-value=0.13 Score=35.08 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc--CCCCCCCccCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH--LNFNCPLCRSP 154 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--~~~~CP~Cr~~ 154 (179)
+...| ||......+..+..=.|...||..|+..-... ....||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 89876544432222249999999998753222 13579999754
No 80
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.47 E-value=0.046 Score=34.29 Aligned_cols=51 Identities=14% Similarity=0.382 Sum_probs=33.7
Q ss_pred cCCcccccccccccC-CCceEEe-CCCCcchHHhHHHHHh------cCCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRD-GELVRKL-DCRHVFHKDCLDGWLH------HLNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~-~~~~~~l-pC~H~fh~~Ci~~wl~------~~~~~CP~Cr~~~ 155 (179)
.++..|.||...... ...+..- .|...||..|+.+-+. ...-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 457899999986432 2333333 4999999999886332 2345799886543
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.16 E-value=0.082 Score=33.98 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~~ 156 (179)
+...|.||..... ++.++.- .|...||..|+..-... ....||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4567999987643 3333444 49999999999854332 2457999976543
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.72 E-value=0.27 Score=30.35 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=31.0
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 153 (179)
..+..|.+|... + .+..- .|...||..|+..-+.. ..-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 2 22333 48999999999975432 2346999965
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.49 E-value=0.14 Score=35.34 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=30.5
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc---CCCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH---LNFNCPLCR 152 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~~CP~Cr 152 (179)
.++..|.||.+.-...+.+.--.|+..||..|+...... ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457899999876322222333459999999999876542 133455553
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.35 E-value=0.24 Score=29.20 Aligned_cols=44 Identities=30% Similarity=0.608 Sum_probs=28.2
Q ss_pred ccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccC
Q 030323 109 DCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRS 153 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 153 (179)
.|.||...-..+ .+..- .|...||..|+.+=+.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888653222 23333 49999999999754432 1346999965
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.71 E-value=0.26 Score=37.44 Aligned_cols=50 Identities=18% Similarity=0.424 Sum_probs=35.3
Q ss_pred cccccccccccCCCc---eEEe-CCCCcchHHhHHHH------Hh----cCCCCCCCccCCCCC
Q 030323 108 SDCMVCLCTLRDGEL---VRKL-DCRHVFHKDCLDGW------LH----HLNFNCPLCRSPVVS 157 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~---~~~l-pC~H~fh~~Ci~~w------l~----~~~~~CP~Cr~~~~~ 157 (179)
..|+||...+.+++. .+.. .|..-||..|+.-- +. .....||.|+..-++
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999998877652 5555 49999999998521 11 015789999876544
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.80 E-value=1.3 Score=29.59 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=37.4
Q ss_pred CCcccccccccccCC---CceEEe-CCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDG---ELVRKL-DCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~---~~~~~l-pC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
....|.||-+.+... +.-... -|+-..|+.|.+-=....+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 457999999986432 222222 488889999999766666889999998875
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.52 E-value=1 Score=31.12 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=28.7
Q ss_pred CCcccccccccc-----cCCCceE-EeCCCCcchHHhHHH------HHhcCCCCCCCcc
Q 030323 106 AGSDCMVCLCTL-----RDGELVR-KLDCRHVFHKDCLDG------WLHHLNFNCPLCR 152 (179)
Q Consensus 106 ~~~~C~ICl~~~-----~~~~~~~-~lpC~H~fh~~Ci~~------wl~~~~~~CP~Cr 152 (179)
....|.+|+..- ..++.+. -..|+..||..|+.. .+....-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457899998752 1222333 335999999999952 2333345566664
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.01 E-value=1.5 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=23.2
Q ss_pred cCCcccccccccccCCCceEEeC---CCCcchHHhHHHH
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD---CRHVFHKDCLDGW 140 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp---C~H~fh~~Ci~~w 140 (179)
..+..|.||-.. ... ..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence 357899999743 333 2344 7899999999985
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=84.99 E-value=0.77 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=24.3
Q ss_pred cCCcccccccccccCCCceEEe--CCCCcchHHhHH
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL--DCRHVFHKDCLD 138 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~ 138 (179)
.+...|++|...+.+.+..+.- .|..-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4577999999988665444444 588889999986
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.87 E-value=1.2 Score=32.42 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=31.6
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHh----------cCCCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----------HLNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----------~~~~~CP~Cr~ 153 (179)
..+..|.+|.+. + .+..- .|...||..|+.+-+. ...-.||.|+.
T Consensus 61 g~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346799999964 3 22333 5999999999996542 23457999964
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.54 E-value=0.45 Score=30.52 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=30.5
Q ss_pred CcccccccccccCCCceEEe-CCCCcchHHhHHHHH--------hcCCCCCCCccCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWL--------HHLNFNCPLCRSPV 155 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl--------~~~~~~CP~Cr~~~ 155 (179)
...| ||....... .++.- .|..-||..|+.--. ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 898876533 33333 599999999985211 12367899997543
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.49 E-value=0.39 Score=36.05 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~~ 156 (179)
.+..|.+|... ++ +... .|...||..|+.+-+.. +.-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45689999854 32 2333 48999999998775543 2356999987543
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.16 E-value=0.31 Score=30.05 Aligned_cols=48 Identities=31% Similarity=0.571 Sum_probs=31.0
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
..+..|.||.+. ++.+..-.|...||..|+.+-+.. ..-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346789999853 222222248999999999864442 134699997643
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.02 E-value=0.29 Score=36.33 Aligned_cols=48 Identities=19% Similarity=0.506 Sum_probs=31.9
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHh----cCCCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----HLNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----~~~~~CP~Cr~ 153 (179)
.+...| +|..........+.- .|...||..|+.--.. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456788 999876544444444 4999999999952111 22567999975
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.12 E-value=0.13 Score=31.13 Aligned_cols=45 Identities=36% Similarity=0.689 Sum_probs=28.9
Q ss_pred cCCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc---CCCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH---LNFNCPLCR 152 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~~CP~Cr 152 (179)
..+..|.+|.+. ++.+..-.|...||..|+.+-+.. ..-.||.|+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456789999974 222222248999999999864432 123577774
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.79 E-value=0.18 Score=31.70 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=31.4
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
..+..|.||.+. ++ +..- .|...||..|+.+-+.. ..-.||.|...-
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 357799999864 22 2333 49999999999864432 134699996543
No 97
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.73 E-value=0.53 Score=36.04 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
.+..|.+|... + .+... .|...||..|+.+-+.. +.-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 46789999843 2 22333 38999999999876543 235799998754
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=80.11 E-value=2.7 Score=29.96 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=29.7
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHH-----Hh-----cCCCCCCCccC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGW-----LH-----HLNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~w-----l~-----~~~~~CP~Cr~ 153 (179)
.+..|.||.+. + .+..- .|...||..|+.+- +. ...-.|++|+-
T Consensus 56 ~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 46689999954 2 22222 48999999999974 21 22357999954
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.16 E-value=1 Score=30.08 Aligned_cols=47 Identities=28% Similarity=0.606 Sum_probs=32.1
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
..+..|.+|... ++ +..- .|...||..|+.+=+.. +.-.||.|+..-
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 456799999964 22 2333 48999999999875543 134699997643
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.15 E-value=0.086 Score=35.22 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=34.6
Q ss_pred CCcccccccccccC-CCceEEe-CCCCcchHHhHHHHHh-------cCCCCCCCccCCCCC
Q 030323 106 AGSDCMVCLCTLRD-GELVRKL-DCRHVFHKDCLDGWLH-------HLNFNCPLCRSPVVS 157 (179)
Q Consensus 106 ~~~~C~ICl~~~~~-~~~~~~l-pC~H~fh~~Ci~~wl~-------~~~~~CP~Cr~~~~~ 157 (179)
.+..|.||...-.. .+.+..- .|...||..|+.+-+. ...-.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999976432 2233333 4999999999986543 224579999765443
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=77.96 E-value=0.84 Score=27.05 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=28.8
Q ss_pred cccccccccccCCCceEEe--CCCCcchHHhHHHHH---hcCCCCCCCcc
Q 030323 108 SDCMVCLCTLRDGELVRKL--DCRHVFHKDCLDGWL---HHLNFNCPLCR 152 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~~wl---~~~~~~CP~Cr 152 (179)
-.|.+|...+.++...+.- .|..-||..|+.--. ......||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3578888887554434433 388889999976321 12467899885
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.55 E-value=2.9 Score=27.91 Aligned_cols=46 Identities=26% Similarity=0.604 Sum_probs=27.9
Q ss_pred CCcccccccccccCCCceEEeC--CC-CcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLD--CR-HVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
+...| ||..... +..+..=. |. ..||..|+. +.. ....||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45667 9988643 32221113 54 579999997 332 245799997643
No 103
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.92 E-value=3 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=27.7
Q ss_pred CCCCcCCcccccccccccCCCce-EEeCCCCcchHHhHHH
Q 030323 101 VASSAAGSDCMVCLCTLRDGELV-RKLDCRHVFHKDCLDG 139 (179)
Q Consensus 101 ~~~~~~~~~C~ICl~~~~~~~~~-~~lpC~H~fh~~Ci~~ 139 (179)
+..+.+...|.+|...|..-..- ..-.||+.||..|...
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34445677999999998754322 3335999999999664
No 104
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.39 E-value=0.13 Score=31.67 Aligned_cols=46 Identities=35% Similarity=0.673 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhc---CCCCCCCccCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH---LNFNCPLCRSP 154 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 154 (179)
.+..|.+|... ++.+..-.|...||..|+.+-+.. ..-.||.|+..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999874 322222249999999999864432 13458888553
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.17 E-value=9.4 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=29.3
Q ss_pred cCCcccccccccccCCCceEEeC--CCCcchHHhHHHHHhc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD--CRHVFHKDCLDGWLHH 143 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp--C~H~fh~~Ci~~wl~~ 143 (179)
.....|.+|.+.+++..-+. .| =.|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 45789999999998764333 33 3699999999988764
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.34 E-value=0.88 Score=31.41 Aligned_cols=45 Identities=24% Similarity=0.580 Sum_probs=28.6
Q ss_pred ccccccccccCCCceEEe-CCCCcchHHhHHHHHhcC---CCCCCCccC
Q 030323 109 DCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHL---NFNCPLCRS 153 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~---~~~CP~Cr~ 153 (179)
.|.||.+.-.+.+.+..- .|...||..|+.+-+... .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 677887642233233333 499999999997654431 346999974
No 107
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.15 E-value=1.4 Score=28.31 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCceEEe--CCCCcchHHhHHHHHhc--------CCCCCCCccCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL--DCRHVFHKDCLDGWLHH--------LNFNCPLCRSPV 155 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~--------~~~~CP~Cr~~~ 155 (179)
+...| ||......+..+..= .|..-||..|+.---.. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 898874444333333 48889999998632111 246799997643
No 108
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.84 E-value=1.1 Score=30.97 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=21.2
Q ss_pred ccccccccccc------CCCc-eEEeCCCCcchHHhHHHH
Q 030323 108 SDCMVCLCTLR------DGEL-VRKLDCRHVFHKDCLDGW 140 (179)
Q Consensus 108 ~~C~ICl~~~~------~~~~-~~~lpC~H~fh~~Ci~~w 140 (179)
..|.+|+..-. +++. +....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46888887531 1222 233359999999998753
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.66 E-value=2.4 Score=27.53 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=26.4
Q ss_pred CCCcCCcccccccccccCCCceEE-eCCCCcchHHhHHH
Q 030323 102 ASSAAGSDCMVCLCTLRDGELVRK-LDCRHVFHKDCLDG 139 (179)
Q Consensus 102 ~~~~~~~~C~ICl~~~~~~~~~~~-lpC~H~fh~~Ci~~ 139 (179)
..+.+...|.+|...|..-..-.- -.||..||..|...
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 333456789999999875432223 35999999999764
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=72.14 E-value=7.3 Score=25.60 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=33.3
Q ss_pred cCCccccccccccc-CCCceEEe-CCCCcchHHhHHHHHh-cCCCCCCCccCCCC
Q 030323 105 AAGSDCMVCLCTLR-DGELVRKL-DCRHVFHKDCLDGWLH-HLNFNCPLCRSPVV 156 (179)
Q Consensus 105 ~~~~~C~ICl~~~~-~~~~~~~l-pC~H~fh~~Ci~~wl~-~~~~~CP~Cr~~~~ 156 (179)
.++..|.||...-. +.+.+..- .|.-.||..|+..-.. .+.-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 46789999997532 22233333 4889999999985321 22456999966443
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.24 E-value=4 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCCCcCCcccccccccccCCCc-eEEeCCCCcchHHhHH
Q 030323 101 VASSAAGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLD 138 (179)
Q Consensus 101 ~~~~~~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~ 138 (179)
+..+.+...|.+|...|..-.. ...-.||.+||..|..
T Consensus 8 W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3444566799999999865432 2333699999999954
No 112
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.71 E-value=5.3 Score=25.23 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=31.4
Q ss_pred cCCcccccccccc-cCCCceEEe-CCCCcchHHhHHHHHh-cCCCCCCCccC
Q 030323 105 AAGSDCMVCLCTL-RDGELVRKL-DCRHVFHKDCLDGWLH-HLNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~-~~~~~~~~l-pC~H~fh~~Ci~~wl~-~~~~~CP~Cr~ 153 (179)
.++..|.||.+.- .+.+.+..- .|.-.||..|+..-.. .+.-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4578999998763 233344433 4999999999874221 22346888753
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=70.17 E-value=4.1 Score=26.86 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=32.3
Q ss_pred cCCcccccccccccCCCce-EEeCCCCcchHHhHHHHHh------cCCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELV-RKLDCRHVFHKDCLDGWLH------HLNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~-~~lpC~H~fh~~Ci~~wl~------~~~~~CP~Cr~~~ 155 (179)
.+...|.+|...|..-..- ..-.||..||..|...... .....|-.|...+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4566899999998754332 2335999999999764321 1124577775433
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.93 E-value=3.3 Score=26.18 Aligned_cols=46 Identities=26% Similarity=0.591 Sum_probs=28.4
Q ss_pred cCCcccccccccccCCCceEEe-C--CC-CcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-D--CR-HVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
.+...| ||..... +. ++.- . |. ..||..|+. +.. ....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345677 8987642 32 2222 3 55 589999998 332 235799997643
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=69.21 E-value=4.5 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=26.1
Q ss_pred cCCcccccccccccCCCc-eEEeCCCCcchHHhHHHH
Q 030323 105 AAGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDGW 140 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~w 140 (179)
.+...|.+|...|..-.. ...-.||+.||..|....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345789999999875432 233359999999997654
No 116
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.98 E-value=3.5 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=25.1
Q ss_pred cCCcccccccccccCCCc-eEEeCCCCcchHHhHHH
Q 030323 105 AAGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDG 139 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~ 139 (179)
.+...|.+|...|..-.. ...-.||+.||..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 345689999999875432 23335999999999653
No 117
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=68.67 E-value=5.2 Score=33.53 Aligned_cols=51 Identities=16% Similarity=0.457 Sum_probs=34.6
Q ss_pred CcccccccccccCCCceEEeCCCCc--chHHhHHHHHh-cCCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHV--FHKDCLDGWLH-HLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~--fh~~Ci~~wl~-~~~~~CP~Cr~~~~~~~ 159 (179)
...||+-...+..| ++...|.|. |-..-+-.... .....||+|.+.+...+
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 56899988887777 555679998 55443333322 23457999998886654
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.95 E-value=5.7 Score=33.16 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=34.8
Q ss_pred CcccccccccccCCCceEEeCCCCc--chHHhHHHHHhc-CCCCCCCccCCCCCCc
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHV--FHKDCLDGWLHH-LNFNCPLCRSPVVSEE 159 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~--fh~~Ci~~wl~~-~~~~CP~Cr~~~~~~~ 159 (179)
...||+-...+..| ++...|.|. |-..-+-....+ ....||+|.+.+..++
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 46899988887776 555679998 655444433332 2457999999887654
No 119
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.84 E-value=0.5 Score=31.67 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=31.6
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---CCCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---LNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 153 (179)
.+...|.||...-. .+.+..- .|...||..|+.+=+.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34668999997632 2233333 49999999999854432 1346999965
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.08 E-value=1.2 Score=28.22 Aligned_cols=44 Identities=32% Similarity=0.635 Sum_probs=26.8
Q ss_pred ccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---C-CCCCCCccC
Q 030323 109 DCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---L-NFNCPLCRS 153 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 153 (179)
.|.||...- ++..+..- .|...||..|+.+=+.. + .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 556776532 22233333 48999999999864443 1 346898864
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.84 E-value=1.4 Score=28.55 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=28.4
Q ss_pred cccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---C-CCCCCCccC
Q 030323 108 SDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---L-NFNCPLCRS 153 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 153 (179)
..|.||...-. +..+..- .|...||..|+.+=+.. + .-.||.|..
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37888886422 2233333 49999999999864432 1 246888854
No 122
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.82 E-value=1.4 Score=34.40 Aligned_cols=45 Identities=29% Similarity=0.585 Sum_probs=25.5
Q ss_pred cccccccccccCCCceEEe-CCCCcchHHhHHHHHhc---C-CCCCCCccC
Q 030323 108 SDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH---L-NFNCPLCRS 153 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 153 (179)
..|.+|...-. +..+... .|...||..|+.+=+.. + .-.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888876422 2222333 49999999999964443 1 246999965
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.41 E-value=3.2 Score=29.72 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCcccccccccccC--CCceEEeCCCCcchHHhHHH
Q 030323 106 AGSDCMVCLCTLRD--GELVRKLDCRHVFHKDCLDG 139 (179)
Q Consensus 106 ~~~~C~ICl~~~~~--~~~~~~lpC~H~fh~~Ci~~ 139 (179)
++..|.+|...|.- ........|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 46899999999842 22333345999999888553
No 124
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=63.24 E-value=1.3 Score=33.53 Aligned_cols=46 Identities=33% Similarity=0.635 Sum_probs=30.2
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhc---CCCCCCCccCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHH---LNFNCPLCRSPV 155 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 155 (179)
+..|.+|.+. ++.+..-.|...||..|+.+=+.. +.-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999854 322222248899999999764432 234699997653
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.91 E-value=0.32 Score=34.41 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCce-EEeCCCCcchHHhHHHHHhcCCCCCCCccC
Q 030323 106 AGSDCMVCLCTLRDGELV-RKLDCRHVFHKDCLDGWLHHLNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~-~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~ 153 (179)
....|..|...|..-..- ..-.||..||..|....... ..+|-.|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHH
Confidence 456899999998754332 33469999999997765442 567888854
No 126
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=62.77 E-value=4.5 Score=27.52 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=33.8
Q ss_pred CcccccccccccCCCceEEe--CCCCcchHHhHHHHH---h------cCCCCCCCccCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKL--DCRHVFHKDCLDGWL---H------HLNFNCPLCRSPVV 156 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~~wl---~------~~~~~CP~Cr~~~~ 156 (179)
...|+||...+.+....+.- .|..-||..|+.--- . .....||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46899999987655444444 488889999986221 0 02467999976543
No 127
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.50 E-value=2.8 Score=25.71 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=28.0
Q ss_pred cccccccccccCCCceEEeC-CCCcchHHhHHHHHhcCCCCCCCc
Q 030323 108 SDCMVCLCTLRDGELVRKLD-CRHVFHKDCLDGWLHHLNFNCPLC 151 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~~CP~C 151 (179)
..|-.|...+.+... ..-+ |++.||.+|-.. +...=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccchhHH-HHhhccCCcCC
Confidence 469999998864421 2234 999999999654 22212479988
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.80 E-value=9.2 Score=23.64 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
....|+.|-+.+...+.+. .-+..||..| .+|..|+.++...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCCC
Confidence 3568999999987655433 3567788755 5789998888754
No 129
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.65 E-value=4.1 Score=25.55 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=25.3
Q ss_pred cCCcccccccccccCCCceEEeCC-CCcchHHhHHHH
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLDC-RHVFHKDCLDGW 140 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lpC-~H~fh~~Ci~~w 140 (179)
++..-|.||.++- .++.+.| +-.||..|...-
T Consensus 6 ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 5678999999873 2577789 789999997764
No 130
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=60.74 E-value=1.1 Score=29.00 Aligned_cols=44 Identities=32% Similarity=0.680 Sum_probs=26.8
Q ss_pred ccccccccccCCCceEEe-CCCCcchHHhHHHHHhcC---C-CCCCCccC
Q 030323 109 DCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHHL---N-FNCPLCRS 153 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~---~-~~CP~Cr~ 153 (179)
.|.||...- +++.+..- .|...||..|+.+-+... . -.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666542 22233333 489999999998655431 2 46998875
No 131
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.22 E-value=2.3 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=8.3
Q ss_pred CcccccccccccCC
Q 030323 107 GSDCMVCLCTLRDG 120 (179)
Q Consensus 107 ~~~C~ICl~~~~~~ 120 (179)
...||+|+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 35666666665543
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.61 E-value=6.8 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.1
Q ss_pred CcccccccccccCCCceE-EeCCCCcchHHhHH
Q 030323 107 GSDCMVCLCTLRDGELVR-KLDCRHVFHKDCLD 138 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~-~lpC~H~fh~~Ci~ 138 (179)
+..|.+|...|..-..-. .-.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999987543222 23599999999964
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.60 E-value=2.2 Score=35.79 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=0.0
Q ss_pred CcCCcccccccccccCCCc-eEEeCCCCcchHHhHHHHHhc------CCCCCCCccCCC
Q 030323 104 SAAGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDGWLHH------LNFNCPLCRSPV 155 (179)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~wl~~------~~~~CP~Cr~~~ 155 (179)
..+...|.+|...|..-.. ...-.||+.||..|....... ....|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456789999998864322 233469999999998765421 134677775544
No 134
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.24 E-value=13 Score=22.37 Aligned_cols=40 Identities=28% Similarity=0.685 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+... .+..-+..||.+| .+|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITTG---GVTYREQPWHKEC---------FVCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCSS---EEESSSSEEETTT---------SBCSSSCCBCTTS
T ss_pred CCCCcccCCeeccc---eEEECccccCCCC---------CccCCCCCcCCcC
Confidence 46899999887643 2334577888655 5788888887543
No 135
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.42 E-value=6.3 Score=24.46 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=5.7
Q ss_pred cccccccccccC
Q 030323 108 SDCMVCLCTLRD 119 (179)
Q Consensus 108 ~~C~ICl~~~~~ 119 (179)
..|..|...+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 345555544443
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=53.11 E-value=12 Score=25.59 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=28.9
Q ss_pred cCCcccccccccccCCCceEEeC---CCCcchHHhHHHHHhcC---CCCCCCccCCCCC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKLD---CRHVFHKDCLDGWLHHL---NFNCPLCRSPVVS 157 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp---C~H~fh~~Ci~~wl~~~---~~~CP~Cr~~~~~ 157 (179)
..+..|.+|.+. + .+..-. |...||..|+. +... .-.||.|+-.+..
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 356789999842 3 223222 77899999997 4431 2358877554443
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.34 E-value=6.4 Score=30.11 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=23.9
Q ss_pred CcccccccccccCCCc-eEEeCCCCcchHHhHHH
Q 030323 107 GSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDG 139 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~ 139 (179)
+..|.+|...|.--.. ...-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 5799999999875432 23335999999998653
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.91 E-value=15 Score=22.53 Aligned_cols=43 Identities=21% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
....|+.|-+.+...+.+.. .-+..||..| .+|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C---------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC---------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT---------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc---------CeECCCCCCCCCC
Confidence 45789999998875443322 2466788655 5788898887654
No 139
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.09 E-value=32 Score=21.80 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.0
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
....|..|-+.+... .+..-+..||.+| ++|-.|+..+....
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKYRHPEC---------FVCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCEECTTT---------CCCSSSCCCTTTSC
T ss_pred cCCCcccCCCEeccc---EEEECCceECccC---------CEecCCCCCCCCCC
Confidence 456899999988753 2234677898755 57899988886543
No 140
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.28 E-value=11 Score=22.76 Aligned_cols=41 Identities=22% Similarity=0.584 Sum_probs=27.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
....|..|-+.+... .+ ..-+..||.+| .+|-.|+.++...
T Consensus 4 ~~~~C~~C~~~I~~~-~~--~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR-VI--KAMNNSWHPEC---------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCSC-CE--EETTEEECTTT---------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecce-EE--EECcccccccC---------CEeCCCCCcCCCC
Confidence 356899999887642 22 23466788755 4788888887654
No 141
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=50.27 E-value=11 Score=23.15 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=23.0
Q ss_pred cCCccccccccc-ccCCCceEEeCCCCcchHHhHHHH
Q 030323 105 AAGSDCMVCLCT-LRDGELVRKLDCRHVFHKDCLDGW 140 (179)
Q Consensus 105 ~~~~~C~ICl~~-~~~~~~~~~lpC~H~fh~~Ci~~w 140 (179)
.+...|.||... |.++-.-...-|.-.||..|--.|
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 456899999984 666644343346666776665444
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.22 E-value=7.3 Score=30.05 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=24.6
Q ss_pred CCcccccccccccCCCc-eEEeCCCCcchHHhHHH
Q 030323 106 AGSDCMVCLCTLRDGEL-VRKLDCRHVFHKDCLDG 139 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~-~~~lpC~H~fh~~Ci~~ 139 (179)
+...|.+|...|.--.. ...-.||+.||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 35699999999875432 23335999999999664
No 143
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.06 E-value=18 Score=22.51 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
....|+.|-+.+... .+..-+..||..| ++|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCc---------CeeCCCCCCCC
Confidence 457899999987753 2234578898765 47888888774
No 144
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.95 E-value=10 Score=23.67 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHh---cCCCCCCCccCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH---HLNFNCPLCRSP 154 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~---~~~~~CP~Cr~~ 154 (179)
....| ||.....+++..+.- .|..-||..|+.---. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 45678 798875555444444 4988899999874211 124579999653
No 145
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.23 E-value=9.4 Score=27.85 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCccccccccccc--CCCceEEeCCCCcchHHhHHHHHhc-CCCCCCCccC
Q 030323 106 AGSDCMVCLCTLR--DGELVRKLDCRHVFHKDCLDGWLHH-LNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~--~~~~~~~lpC~H~fh~~Ci~~wl~~-~~~~CP~Cr~ 153 (179)
.+..|.+|...|. .+.......|+|.+|..|-. |... ..-.|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4789999999864 33334444699999999973 3221 1124666643
No 146
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.74 E-value=16 Score=23.36 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.8
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
....|+.|-+.+... .+..-+..||..| .+|-.|+.++...
T Consensus 24 ~~~~C~~C~~~I~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP---FLVALGKSWHPEE---------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCCSC---EEEETTEEECTTT---------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEecce---EEEECCccccccC---------CccCCCCCCCCCC
Confidence 356899999988533 2234577888754 5788998888654
No 147
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.18 E-value=17 Score=22.68 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
....|+.|-+.+... . +..-+..||.+| .+|-.|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~-~--v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-P--LIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSC-C--CCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecce-E--EEECcceeCCCC---------CEeCCCCCccCCC
Confidence 457899999987732 2 223567788654 5889998888754
No 148
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=47.73 E-value=18 Score=21.51 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.3
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+... .+..-+..||..| .+|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIEGR---VVNAMGKQWHVEH---------FVCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECCSC---EECCTTSBEETTT---------CBCTTTCCBCSSS
T ss_pred CCCCcccCCEecce---EEEECccccccCc---------CEECCCCCCCCCC
Confidence 46899999988732 2334577888755 5788998888653
No 149
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.13 E-value=7.6 Score=26.38 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=11.5
Q ss_pred cchHHhHHHHHhc
Q 030323 131 VFHKDCLDGWLHH 143 (179)
Q Consensus 131 ~fh~~Ci~~wl~~ 143 (179)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 150
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.11 E-value=13 Score=22.45 Aligned_cols=40 Identities=25% Similarity=0.614 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
....|+.|-+.+... .+ ..-+..||..| .+|-.|+.++..
T Consensus 4 ~~~~C~~C~~~I~~~-~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (69)
T 2cur_A 4 GSSGCVKCNKAITSG-GI--TYQDQPWHADC---------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCCSSSCCCCCTT-CE--EETTEEECTTT---------TBCTTTCCBCTT
T ss_pred CcCCCcccCCEeCcc-eE--EECccccccCc---------CEECCCCCCCCC
Confidence 346888888887643 22 23466788654 468888888763
No 151
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=47.02 E-value=7.6 Score=26.32 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=11.4
Q ss_pred cchHHhHHHHHhc
Q 030323 131 VFHKDCLDGWLHH 143 (179)
Q Consensus 131 ~fh~~Ci~~wl~~ 143 (179)
.||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.39 E-value=24 Score=21.30 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=24.8
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
...|..|-+.+...+... ..-+..||..| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-ECSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE-EECCCeEcccC---------CcccccCCcCC
Confidence 467888888766432222 22466777654 46788887774
No 153
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.06 E-value=2.7 Score=25.63 Aligned_cols=43 Identities=26% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCcccccccccccCCCceEEe-C--CC-CcchHHhHHHHHhc---CCCCCCCccC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-D--CR-HVFHKDCLDGWLHH---LNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 153 (179)
+...| ||.... .+ .++.- . |. ..||..|+. +.. +...||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45566 898763 23 22222 3 44 579999998 332 2346888854
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=44.86 E-value=5.3 Score=20.84 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=17.4
Q ss_pred cccccccccccCCCceEEeCCCCcchHHh
Q 030323 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDC 136 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lpC~H~fh~~C 136 (179)
..|+.|-..+...+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 47888888765543332 3467788877
No 155
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.08 E-value=23 Score=21.43 Aligned_cols=42 Identities=29% Similarity=0.589 Sum_probs=28.1
Q ss_pred CCcccccccccccC--CCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 106 AGSDCMVCLCTLRD--GELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 106 ~~~~C~ICl~~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
....|+.|-+.+.. .+.+. ..-+..||.+| .+|-.|+.++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C---------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI-SFEERQWHNDC---------FNCKKCSLSLVG 47 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE-ECSSCEECTTT---------CBCSSSCCBCTT
T ss_pred CCCCCcCCCccccCCCCcceE-EECCcccCccc---------CEeccCCCcCCC
Confidence 35689999988774 22222 23577888755 578888888764
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.41 E-value=30 Score=20.76 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=28.3
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+...+.+.. .-+..||..| .+|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME-YKGSSWHETC---------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE-ETTEEEETTT---------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEE-ECcCeecccC---------CcccccCCccCCC
Confidence 4589999988876433322 2466788654 5788898887654
No 157
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.99 E-value=3.5 Score=25.06 Aligned_cols=43 Identities=30% Similarity=0.654 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCceEEe-C--CC-CcchHHhHHHHHhc---CCCCCCCccC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-D--CR-HVFHKDCLDGWLHH---LNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~ 153 (179)
+...| ||.... .++ ++.- . |. ..||..|+. +.. +...||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45567 998864 232 2222 3 55 589999998 332 1346888854
No 158
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.98 E-value=32 Score=21.52 Aligned_cols=40 Identities=23% Similarity=0.593 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
....|+.|-+.+...+.+.. -+..||.+| .+|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 45689999998876654443 466788655 57889988875
No 159
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.28 E-value=20 Score=21.99 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=24.9
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
...|+-|-..+... .+..-+..||.+| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~---~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGR---VLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSC---CBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCe---eEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 45788888877652 2223567788655 57778877776
No 160
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.98 E-value=34 Score=20.50 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=28.1
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+...+.+ +..-+..||..| .+|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC---------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT---------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEECccccCccc---------CeECCCCCcCCCC
Confidence 45899999887753222 223577788655 5788888887654
No 161
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.79 E-value=4.4 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=9.2
Q ss_pred CCCCCCccCCCCCC
Q 030323 145 NFNCPLCRSPVVSE 158 (179)
Q Consensus 145 ~~~CP~Cr~~~~~~ 158 (179)
+..||+|+...+..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34688888766543
No 162
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=25 Score=22.09 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
....|+.|-+.+...+.+. .-+..||..| .+|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C---------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC---------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT---------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc---------CEEcCCCCCcCCCc
Confidence 3568999999886554433 3466788766 57888888876554
No 163
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.34 E-value=14 Score=22.93 Aligned_cols=47 Identities=21% Similarity=0.495 Sum_probs=29.7
Q ss_pred cCCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc--CCCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH--LNFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~--~~~~CP~Cr~ 153 (179)
.+...| ||..... ++..+.- .|..-||..|+.--... ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 9987654 3333444 49999999998742211 1356888864
No 164
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.86 E-value=30 Score=25.37 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=29.5
Q ss_pred cCCcccccccccccCCCceEEe---CCCCcchHHhHHHHHhcC---------CCCCCCcc
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL---DCRHVFHKDCLDGWLHHL---------NFNCPLCR 152 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l---pC~H~fh~~Ci~~wl~~~---------~~~CP~Cr 152 (179)
..+..|.||-+. + .+..- .|...||..||+..+... .-.|=+|.
T Consensus 77 G~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 346788888853 2 22322 388899999999886432 23588884
No 165
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.64 E-value=3.6 Score=24.14 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=24.7
Q ss_pred cccccccCCCceEEe-CCCCcchHHhHHHHHhc--CCCCCCCccC
Q 030323 112 VCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH--LNFNCPLCRS 153 (179)
Q Consensus 112 ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~--~~~~CP~Cr~ 153 (179)
||..... +..++.- .|..-||..|+.---.. ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 3233333 48888999998732211 2457888864
No 166
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.67 E-value=38 Score=20.91 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=29.5
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+...+.+. ..-+..||.+| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECcccccccc---------CchhhCCCccCCC
Confidence 368999999887554432 23577888655 5788998888654
No 167
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.20 E-value=11 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.698 Sum_probs=11.4
Q ss_pred HHhcCCCCCCCccCCCCCCc
Q 030323 140 WLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 140 wl~~~~~~CP~Cr~~~~~~~ 159 (179)
|+....+.||.|+..+...+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 33333456787777665443
No 168
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.73 E-value=41 Score=20.52 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=27.9
Q ss_pred CcccccccccccC--CCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRD--GELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~--~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+.. ... .+..-+..||.+| .+|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~C---------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSEC---------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGG---------CBCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCccc---------CChhhCCCcCCCC
Confidence 4589999988774 222 2223567788766 4788888887643
No 169
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=34.72 E-value=26 Score=20.88 Aligned_cols=42 Identities=19% Similarity=0.521 Sum_probs=29.3
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-..+...+.+.. .=+..||..| .+|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C---------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC---------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTT---------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCC---------CcccCCCCCCCCC
Confidence 5689999998876544332 3466788765 4788898887654
No 170
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.16 E-value=13 Score=25.19 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=24.0
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
+..||+|..++..... +.+|..|-.. +.. ...||-|..++.
T Consensus 32 ~~~CP~Cq~eL~~~g~-------~~hC~~C~~~-f~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG-------HARCRSCGEF-IEM-KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETT-------EEEETTTCCE-EEE-EEECTTTCSBCE
T ss_pred cccCccCCCcceecCC-------EEECccccch-hhc-cccCcchhhHHH
Confidence 4799999987653222 2223334222 121 457999988874
No 171
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=33.17 E-value=94 Score=19.74 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 030323 11 SSDSLPLLIVALIANCFGNLRSLLFSLLHSVGMTRVDPVQ 50 (179)
Q Consensus 11 ~~~~i~~~i~~~i~~~v~~l~~~l~~~~~~~g~~~~~~~~ 50 (179)
|..++.-+++ |+..++.+..++...+-++.+.|...++
T Consensus 10 pttgvvtv~v--iliavaalg~li~gcwcylrlqri~qse 47 (90)
T 1zza_A 10 PTTGVVTVIV--ILIAIAALGALILGCWCYLRLQRISQSE 47 (90)
T ss_dssp THHHHHHHHH--HHHHHHHHHHHHHHHHTTTSSCSSCSSC
T ss_pred CCcceEEehh--HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455544443 3344555556666666667777665443
No 172
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=27 Score=23.69 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=33.2
Q ss_pred CcccccccccccC-CCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCcch
Q 030323 107 GSDCMVCLCTLRD-GELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERV 161 (179)
Q Consensus 107 ~~~C~ICl~~~~~-~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 161 (179)
-..|..|...+.+ +.. -...=+..||..|..+-+.. ...|..|..++......
T Consensus 32 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEESS
T ss_pred CCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCC-CCccccCCCCcCchheE
Confidence 3478888777752 111 11234667888888775432 33899999988765433
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.77 E-value=26 Score=21.77 Aligned_cols=40 Identities=30% Similarity=0.777 Sum_probs=27.0
Q ss_pred cccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCCc
Q 030323 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEE 159 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 159 (179)
..|+.|-+.+.. +.+. .-+..||..| .+|-.|+.++...+
T Consensus 16 ~~C~~C~~~I~~-~~v~--a~~~~wH~~C---------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS--ALGKTYHPDC---------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--ETTEEECTTT---------SSCSSSCCCCCSSS
T ss_pred CcCccccCEecc-ceEE--ECCceeCccC---------CccccCCCCCCCCC
Confidence 489999998773 2222 3567788654 57888888876443
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.46 E-value=43 Score=21.26 Aligned_cols=41 Identities=29% Similarity=0.643 Sum_probs=27.0
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+...+.+ ..-+..||..| .+|-.|..++...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISC---------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTT---------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCC---------CeeCCCCCCCCCC
Confidence 46888888887655433 34567788655 4677777766543
No 175
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.42 E-value=34 Score=21.02 Aligned_cols=40 Identities=25% Similarity=0.663 Sum_probs=27.0
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+... .+..-+..||..| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (80)
T 2cuq_A 15 APRCARCSKTLTQG---GVTYRDQPWHREC---------LVCTGCQTPLAGQ 54 (80)
T ss_dssp SCCCTTTCCCCCSC---CEESSSSEECTTT---------CBCSSSCCBCTTC
T ss_pred CCcCCCCCCEecCc---EEEECCchhhhhh---------CCcccCCCcCCCC
Confidence 35888898887653 2234567788655 5788888888543
No 176
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.18 E-value=60 Score=20.79 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=26.9
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
-..|..|...+.... . ...=+..||..|..+ .....|..|..++.+.
T Consensus 33 CF~C~~C~~~L~~~~-~-~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 33 CFRCAKCLHPLANET-F-VAKDNKILCNKCTTR---EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TCCCSSSCCCTTSSC-C-EEETTEEECHHHHTT---CCCCBCSSSCCBCCSS
T ss_pred CCcccccCCCCCcCe-e-ECcCCEEEChhHhhh---hcCCccccCCCccccC
Confidence 356777776664321 1 112355677666532 2256799998888754
No 177
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.07 E-value=11 Score=25.80 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=16.8
Q ss_pred EeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 125 KLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 125 ~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...||+.|. +. + .....||.|+..-...
T Consensus 70 C~~CG~~F~----~~-~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 70 CRKCGFVFK----AE-I-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BTTTCCBCC----CC-S-SCCSSCSSSCCCCBCC
T ss_pred hhhCcCeec----cc-C-CCCCCCcCCCCCccCC
Confidence 345888881 11 1 1256899998865443
No 178
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.38 E-value=38 Score=28.44 Aligned_cols=46 Identities=26% Similarity=0.536 Sum_probs=30.5
Q ss_pred cCCcccccccccccCCCceEEe--CCCCcchHHhHHHHHhcC---------CCCCCCccC
Q 030323 105 AAGSDCMVCLCTLRDGELVRKL--DCRHVFHKDCLDGWLHHL---------NFNCPLCRS 153 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~l--pC~H~fh~~Ci~~wl~~~---------~~~CP~Cr~ 153 (179)
..+..|.+|-+. ++.+..= .|...||..||+..+..+ .-.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 346688888754 2222333 588999999999987321 346888853
No 179
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.54 E-value=24 Score=22.93 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=6.3
Q ss_pred ccccccccccc
Q 030323 108 SDCMVCLCTLR 118 (179)
Q Consensus 108 ~~C~ICl~~~~ 118 (179)
..||.|..++.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45666665544
No 180
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.27 E-value=19 Score=22.37 Aligned_cols=41 Identities=34% Similarity=0.631 Sum_probs=26.8
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+...+.+. .-+..||.+| .+|-.|+.++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCC---------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSS---------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEE--eCCccccccc---------CccCCCCCCCCCC
Confidence 468899988876554332 3566777654 4677887777554
No 181
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.94 E-value=37 Score=20.94 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=25.1
Q ss_pred cccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 108 SDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
..|+.|-+.+... .+..-+..||.+| .+|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGP---FMVAGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSC---CBCCTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CcCccCCCCcCce---EEEECCceecccc---------CCccCCCCccCC
Confidence 4788888887732 2223567788644 578888888754
No 182
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.09 E-value=33 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.530 Sum_probs=27.1
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+... . +..-+..||..| .+|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~~-~--~~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILDR-I--LRAMGKAYHPGC---------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCSC-C--EEETTEEECTTT---------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecce-e--EEECCccccHHh---------cCcccCCCccCCC
Confidence 46899999887642 2 223567788654 5788998888643
No 183
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=33 Score=21.10 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=27.0
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+... .+ ..-+..||..| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~-~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YL--SAMDTVWHPEC---------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSS-CE--EETTEEECTTT---------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecce-eE--EECCCeEecCc---------CChhhCCCCCCCC
Confidence 35899998887753 22 23466788654 5788898888654
No 184
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.83 E-value=40 Score=23.09 Aligned_cols=40 Identities=20% Similarity=0.490 Sum_probs=28.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
....|+.|-+.+.....+. .-+..||..| ++|-.|+.++.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY--AMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE--ETTEEEETTT---------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEE--eCCcEEcccc---------cCcCcCCCccc
Confidence 4568999999887542222 3577888765 57889988875
No 185
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.77 E-value=1.6e+02 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=9.9
Q ss_pred CCCCCCccCCCCCC
Q 030323 145 NFNCPLCRSPVVSE 158 (179)
Q Consensus 145 ~~~CP~Cr~~~~~~ 158 (179)
...|..|..++.+.
T Consensus 119 ~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 119 GTKCAACQLGIPPT 132 (182)
T ss_dssp SCCCTTTCCCCCSS
T ss_pred ccccccCCCccCCC
Confidence 45788888877654
No 186
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=25.09 E-value=64 Score=20.00 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEEe-CCCCcchHHhHHHHHh----cCCCCCCCccCC
Q 030323 107 GSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----HLNFNCPLCRSP 154 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----~~~~~CP~Cr~~ 154 (179)
...| ||...+......+.- .|.--||..|+.---. .....||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3444 898776544344444 4998999999963211 124679999654
No 187
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.81 E-value=13 Score=31.89 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.1
Q ss_pred cccccccccccCCCceEEe-CCCCcchHHhHHHHHh----cCCCCCCCccCCCC
Q 030323 108 SDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLH----HLNFNCPLCRSPVV 156 (179)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~~ 156 (179)
....+|......+...+.. .|..-||..|+.---. .....||.|+..-.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3455898876534444555 4998999999962111 12468999976443
No 188
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=24.60 E-value=1.1e+02 Score=19.68 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=28.6
Q ss_pred CcccccccccccCC---CceEEeCCCCcchHHhHHHHHhcCCCCCCC
Q 030323 107 GSDCMVCLCTLRDG---ELVRKLDCRHVFHKDCLDGWLHHLNFNCPL 150 (179)
Q Consensus 107 ~~~C~ICl~~~~~~---~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~ 150 (179)
...|.+|.+..... ...+.+-|+-..|..|.... ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~----~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL----LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC----CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc----cCcCCC
Confidence 47999998874422 34566779999999998873 445654
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.40 E-value=49 Score=20.09 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=28.1
Q ss_pred CcccccccccccC---CCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRD---GELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~---~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
...|+.|-+.+.. ... .+..=+..||..| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCccc---------CEehhcCCCCCCC
Confidence 3689999998774 222 2223467788755 5789998888644
No 190
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=24.38 E-value=26 Score=21.52 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEEeC---CCCcchHHhHHHHH---hc----CCCCCCCccC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLD---CRHVFHKDCLDGWL---HH----LNFNCPLCRS 153 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp---C~H~fh~~Ci~~wl---~~----~~~~CP~Cr~ 153 (179)
+...| ||......+. ++.-. |..-||..|+.--- .. ....||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34567 7976554443 33332 77789999974210 00 1356999974
No 191
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.95 E-value=39 Score=22.94 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSP 154 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~ 154 (179)
.-..|..|...+..++... ..=+..||..|....+.. .|..|...
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~---~~~~~~~~ 79 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKI---NGGSGGSG 79 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHH---HTCCCCCC
T ss_pred ccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhcc---ccCCCCCC
Confidence 4567778877775443322 234677888888776543 45555444
No 192
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.91 E-value=20 Score=22.46 Aligned_cols=12 Identities=33% Similarity=1.196 Sum_probs=9.0
Q ss_pred CCCCCCccCCCC
Q 030323 145 NFNCPLCRSPVV 156 (179)
Q Consensus 145 ~~~CP~Cr~~~~ 156 (179)
--.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (69)
T 2pk7_A 8 ILACPICKGPLK 19 (69)
T ss_dssp TCCCTTTCCCCE
T ss_pred heeCCCCCCcCe
Confidence 457888888775
No 193
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.57 E-value=5.3 Score=25.68 Aligned_cols=14 Identities=21% Similarity=0.914 Sum_probs=12.6
Q ss_pred CCCCcchHHhHHHH
Q 030323 127 DCRHVFHKDCLDGW 140 (179)
Q Consensus 127 pC~H~fh~~Ci~~w 140 (179)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999999887
No 194
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=22.89 E-value=19 Score=19.96 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=11.2
Q ss_pred CCCCCccCCCCCCcchh
Q 030323 146 FNCPLCRSPVVSEERVW 162 (179)
Q Consensus 146 ~~CP~Cr~~~~~~~~~~ 162 (179)
..||.|...++..+...
T Consensus 10 ~~C~~C~~~i~~~~~~E 26 (39)
T 2i5o_A 10 VPCEKCGSLVPVWDMPE 26 (39)
T ss_dssp EECTTTCCEEEGGGHHH
T ss_pred cccccccCcCCcccccc
Confidence 36888888776654433
No 195
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.20 E-value=42 Score=22.84 Aligned_cols=25 Identities=36% Similarity=0.770 Sum_probs=16.1
Q ss_pred EEeCCCCcchHHhHHHHHhcCCC-CCCCccCCC
Q 030323 124 RKLDCRHVFHKDCLDGWLHHLNF-NCPLCRSPV 155 (179)
Q Consensus 124 ~~lpC~H~fh~~Ci~~wl~~~~~-~CP~Cr~~~ 155 (179)
+...|||.|-. ..... .||.|..+.
T Consensus 75 ~C~~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeC-------CCCCCCcCccccCCC
Confidence 44568887764 12256 899997763
No 196
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.13 E-value=43 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=21.0
Q ss_pred cCCcccccccccccCC-C-ceEEeCCCCcchHHhH
Q 030323 105 AAGSDCMVCLCTLRDG-E-LVRKLDCRHVFHKDCL 137 (179)
Q Consensus 105 ~~~~~C~ICl~~~~~~-~-~~~~lpC~H~fh~~Ci 137 (179)
..+..|+.|.+.|.-- + ....-.|.|..|.+|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4578999999987521 1 1222248887777774
No 197
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.52 E-value=23 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=18.2
Q ss_pred CCCCCCccCCCCCCcchhhhhhhccc
Q 030323 145 NFNCPLCRSPVVSEERVWNTRRRVGG 170 (179)
Q Consensus 145 ~~~CP~Cr~~~~~~~~~~~~~~~~~~ 170 (179)
...||.|...+..+..+..+...+-+
T Consensus 51 ~FkCP~CgEEFyG~~Lp~~EaeKVFE 76 (95)
T 2k5c_A 51 VFKCPVCGEEFYGKTLPRREAEKVFE 76 (95)
T ss_dssp EEECTTTCCEEETTSSCTTTHHHHHH
T ss_pred hhcCCCccHHHhcccCChHHHHHHHH
Confidence 45799999988777666666555443
No 198
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.34 E-value=73 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=29.6
Q ss_pred CcccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCCC
Q 030323 107 GSDCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSE 158 (179)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 158 (179)
-..|..|...+... . -...=+..||..|..+- ....|..|..++.+.
T Consensus 30 CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHH---SCCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcC-E-EEeECCEEechHHhCcC---cCccCcccCCcCCcC
Confidence 45777777776543 1 12234667787776653 256788888888753
No 199
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.23 E-value=59 Score=21.98 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=21.0
Q ss_pred CcccccccccccC-CCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCCC
Q 030323 107 GSDCMVCLCTLRD-GELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVS 157 (179)
Q Consensus 107 ~~~C~ICl~~~~~-~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 157 (179)
-..|..|...+.. +.. -...=+..||..|..+-+.. ...|..|..++.+
T Consensus 29 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCC-EEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCe-EEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 3455555555532 111 11123444555555443211 1156666665543
No 200
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=21.07 E-value=66 Score=23.47 Aligned_cols=38 Identities=34% Similarity=0.760 Sum_probs=18.2
Q ss_pred ccccccccccCCCceEEeCCCCcchHHhHHHHHhcCCCCCCCccCCCC
Q 030323 109 DCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 156 (179)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 156 (179)
.|..|-..+...+.+. ..-++.||..| ++|-.|...+.
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~C---------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKC---------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGG---------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCC---------CeECCCCCCCC
Confidence 4666666554322211 12355566554 35555555553
No 201
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=20.70 E-value=66 Score=27.71 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCceEEe-CCCCcchHHhHHHHHhc----CCCCCCCccCC
Q 030323 106 AGSDCMVCLCTLRDGELVRKL-DCRHVFHKDCLDGWLHH----LNFNCPLCRSP 154 (179)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~~CP~Cr~~ 154 (179)
+...| +|.........++.. .|..-||..|+.---.. ....||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34456 998876534444555 49999999999632111 13679999753
No 202
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=20.24 E-value=1.1e+02 Score=16.27 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 030323 14 SLPLLIVALIANCFGNLRSLLFSLL 38 (179)
Q Consensus 14 ~i~~~i~~~i~~~v~~l~~~l~~~~ 38 (179)
+-|+++...+.-.+.++..++..++
T Consensus 6 sDplviaA~IigiLHlilWildrLf 30 (35)
T 2ljb_A 6 SDPLVVAASIIGILHFIAWTIGHLN 30 (35)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhH
Confidence 3466666666666777666666554
Done!