Query 030324
Match_columns 179
No_of_seqs 140 out of 440
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02351 cytochromes b561 fami 100.0 1.1E-54 2.3E-59 360.2 16.8 173 1-174 58-231 (242)
2 cd08764 Cyt_b561_CG1275_like N 100.0 1.9E-51 4.1E-56 337.4 16.4 168 1-171 31-203 (214)
3 PLN02810 carbon-monoxide oxyge 100.0 8.9E-51 1.9E-55 334.5 16.8 166 1-168 54-221 (231)
4 PLN02680 carbon-monoxide oxyge 100.0 8.3E-50 1.8E-54 330.3 16.7 167 1-168 54-222 (232)
5 KOG1619 Cytochrome b [Energy p 100.0 2E-49 4.3E-54 326.5 11.8 173 1-175 62-237 (245)
6 cd08766 Cyt_b561_ACYB-1_like P 100.0 1.4E-41 3.1E-46 264.2 11.9 128 1-129 15-144 (144)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 5.2E-41 1.1E-45 263.0 12.1 129 1-130 19-152 (153)
8 cd08762 Cyt_b561_CYBASC3 Verte 100.0 7.6E-41 1.6E-45 267.3 12.1 130 1-131 42-176 (179)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 3.1E-40 6.6E-45 256.5 11.8 126 1-127 14-142 (143)
10 PF03188 Cytochrom_B561: Eukar 100.0 2.6E-29 5.6E-34 191.7 11.5 127 1-128 6-137 (137)
11 cd08554 Cyt_b561 Eukaryotic cy 100.0 3.8E-29 8.1E-34 190.4 10.5 120 1-121 9-131 (131)
12 cd08761 Cyt_b561_CYB561D2_like 100.0 1.4E-28 3.1E-33 197.3 10.9 128 1-130 28-163 (183)
13 smart00665 B561 Cytochrome b-5 99.9 7.8E-28 1.7E-32 182.9 10.0 120 1-121 6-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 5.6E-21 1.2E-25 153.9 13.8 120 1-124 43-163 (191)
15 PF10348 DUF2427: Domain of un 98.1 9.5E-06 2.1E-10 60.1 6.7 75 1-84 25-102 (105)
16 KOG4293 Predicted membrane pro 96.9 4.9E-05 1.1E-09 68.2 -4.7 116 3-122 221-340 (403)
17 smart00665 B561 Cytochrome b-5 96.8 0.022 4.8E-07 42.9 10.4 89 29-123 1-92 (129)
18 cd08554 Cyt_b561 Eukaryotic cy 96.5 0.058 1.3E-06 40.5 11.0 91 28-124 3-95 (131)
19 PF00033 Cytochrom_B_N: Cytoch 96.5 0.051 1.1E-06 42.3 10.9 144 26-170 8-179 (188)
20 PF03188 Cytochrom_B561: Eukar 96.5 0.062 1.3E-06 40.4 10.9 90 29-124 1-94 (137)
21 PF13301 DUF4079: Protein of u 96.1 0.093 2E-06 42.2 10.1 89 25-122 78-170 (175)
22 cd08760 Cyt_b561_FRRS1_like Eu 95.7 0.44 9.6E-06 38.1 12.9 96 22-124 31-127 (191)
23 cd08761 Cyt_b561_CYB561D2_like 95.4 0.44 9.5E-06 38.0 11.7 130 26-163 20-155 (183)
24 cd08763 Cyt_b561_CYB561 Verteb 95.2 0.5 1.1E-05 36.8 11.2 122 27-159 7-132 (143)
25 PF13706 PepSY_TM_3: PepSY-ass 95.1 0.027 5.8E-07 33.9 2.9 32 58-89 3-34 (37)
26 cd08764 Cyt_b561_CG1275_like N 93.1 2.8 6.1E-05 34.8 12.0 92 26-123 23-118 (214)
27 cd08766 Cyt_b561_ACYB-1_like P 91.1 6 0.00013 30.8 11.7 91 26-123 7-99 (144)
28 PLN02680 carbon-monoxide oxyge 90.9 6.7 0.00015 33.0 11.9 91 26-123 46-138 (232)
29 PRK11513 cytochrome b561; Prov 90.4 2.4 5.3E-05 33.7 8.5 92 26-123 9-104 (176)
30 PF13172 PepSY_TM_1: PepSY-ass 88.5 0.89 1.9E-05 26.5 3.5 28 95-122 2-29 (34)
31 PF13706 PepSY_TM_3: PepSY-ass 87.5 1 2.3E-05 26.9 3.5 29 95-123 1-29 (37)
32 PF04238 DUF420: Protein of un 87.5 2.9 6.3E-05 32.1 6.8 93 28-130 6-107 (133)
33 PF01794 Ferric_reduct: Ferric 87.5 4.7 0.0001 29.0 7.7 55 66-121 1-56 (125)
34 PF13703 PepSY_TM_2: PepSY-ass 87.3 4 8.6E-05 28.6 7.0 25 98-122 60-84 (88)
35 PRK05419 putative sulfite oxid 85.0 20 0.00043 29.4 11.7 64 48-118 30-93 (205)
36 PF00033 Cytochrom_B_N: Cytoch 85.0 10 0.00022 29.2 8.9 55 69-123 14-71 (188)
37 PF01292 Ni_hydr_CYTB: Prokary 84.8 16 0.00035 28.1 13.6 138 26-168 6-171 (182)
38 TIGR02125 CytB-hydogenase Ni/F 84.2 19 0.00042 28.6 10.8 141 26-169 7-194 (211)
39 cd08765 Cyt_b561_CYBRD1 Verteb 83.5 20 0.00043 28.2 11.6 91 27-124 12-107 (153)
40 PF01292 Ni_hydr_CYTB: Prokary 80.9 23 0.0005 27.2 10.3 51 69-120 12-64 (182)
41 PF11158 DUF2938: Protein of u 78.6 4.6 0.0001 31.7 4.8 86 26-114 58-148 (150)
42 cd08762 Cyt_b561_CYBASC3 Verte 78.0 29 0.00062 28.1 9.3 122 26-159 34-162 (179)
43 PF13703 PepSY_TM_2: PepSY-ass 76.8 12 0.00025 26.2 6.0 57 26-83 16-84 (88)
44 PF03929 PepSY_TM: PepSY-assoc 76.4 4.4 9.6E-05 22.7 3.0 25 59-83 1-25 (27)
45 PLN02351 cytochromes b561 fami 75.0 51 0.0011 28.0 11.9 118 28-157 52-172 (242)
46 PF13172 PepSY_TM_1: PepSY-ass 75.0 4.3 9.4E-05 23.5 2.9 26 58-83 4-29 (34)
47 COG3038 CybB Cytochrome B561 [ 72.9 12 0.00025 30.4 5.8 95 26-124 12-110 (181)
48 COG3038 CybB Cytochrome B561 [ 70.7 51 0.0011 26.7 9.1 54 70-124 19-72 (181)
49 PF13301 DUF4079: Protein of u 68.3 61 0.0013 26.0 9.5 107 32-154 57-163 (175)
50 PLN02810 carbon-monoxide oxyge 67.1 77 0.0017 26.7 10.3 123 26-159 46-171 (231)
51 PF14358 DUF4405: Domain of un 61.3 37 0.00079 22.1 5.6 50 66-115 5-58 (64)
52 TIGR03144 cytochr_II_ccsB cyto 59.1 1E+02 0.0022 25.5 11.9 149 14-176 13-187 (243)
53 cd00284 Cytochrome_b_N Cytochr 55.9 1.1E+02 0.0024 24.9 9.2 64 58-122 18-95 (200)
54 PRK10263 DNA translocase FtsK; 55.5 71 0.0015 33.5 8.7 60 29-89 19-88 (1355)
55 PF07857 DUF1632: CEO family ( 54.5 59 0.0013 27.6 7.0 65 100-170 74-142 (254)
56 PLN02631 ferric-chelate reduct 53.9 47 0.001 32.4 7.0 24 96-119 186-209 (699)
57 CHL00070 petB cytochrome b6 53.2 1.2E+02 0.0025 25.2 8.4 61 63-123 33-107 (215)
58 PF13858 DUF4199: Protein of u 52.8 73 0.0016 24.2 6.8 90 65-169 5-98 (163)
59 PF01578 Cytochrom_C_asm: Cyto 51.6 1.2E+02 0.0027 24.1 11.1 28 94-121 67-94 (214)
60 PF10067 DUF2306: Predicted me 50.8 33 0.00071 24.7 4.3 28 95-122 2-29 (103)
61 PLN02292 ferric-chelate reduct 50.7 61 0.0013 31.6 7.2 22 96-117 203-224 (702)
62 KOG1619 Cytochrome b [Energy p 48.7 1.7E+02 0.0037 24.9 9.7 99 28-134 56-157 (245)
63 PF10348 DUF2427: Domain of un 47.3 1.1E+02 0.0024 22.3 8.7 89 21-124 12-103 (105)
64 COG3658 Cytochrome b [Energy p 46.5 93 0.002 25.2 6.5 100 61-162 35-167 (192)
65 COG2245 Predicted membrane pro 46.3 1.6E+02 0.0034 23.9 10.4 24 96-119 88-111 (182)
66 PF10856 DUF2678: Protein of u 46.1 47 0.001 25.1 4.5 61 22-90 23-85 (118)
67 PF10951 DUF2776: Protein of u 44.6 2.2E+02 0.0049 25.1 9.0 88 26-122 150-242 (347)
68 KOG4050 Glutamate transporter 43.7 61 0.0013 26.1 5.0 35 30-65 76-110 (188)
69 PF05640 NKAIN: Na,K-Atpase In 43.7 43 0.00094 27.6 4.3 57 105-167 5-61 (200)
70 PRK11513 cytochrome b561; Prov 40.4 62 0.0014 25.6 4.8 50 70-122 16-65 (176)
71 KOG2568 Predicted membrane pro 40.1 3.3E+02 0.0071 25.7 10.7 98 22-124 228-328 (518)
72 PLN02844 oxidoreductase/ferric 38.2 1.5E+02 0.0033 29.0 7.8 23 97-119 190-212 (722)
73 PRK03735 cytochrome b6; Provis 37.5 2E+02 0.0043 24.0 7.5 63 62-124 40-116 (223)
74 PRK13673 hypothetical protein; 37.3 1.2E+02 0.0026 22.9 5.6 91 16-122 20-110 (118)
75 PF10856 DUF2678: Protein of u 36.0 59 0.0013 24.6 3.7 58 61-131 29-86 (118)
76 KOG2234 Predicted UDP-galactos 35.9 2.5E+02 0.0054 25.1 8.2 83 33-118 147-233 (345)
77 PF09990 DUF2231: Predicted me 34.8 1.7E+02 0.0036 20.8 7.6 57 58-120 38-94 (104)
78 PF07457 DUF1516: Protein of u 34.1 1.5E+02 0.0033 21.9 5.7 51 22-73 28-78 (110)
79 PRK10639 formate dehydrogenase 33.1 2.6E+02 0.0057 22.5 8.2 64 59-123 107-174 (211)
80 PF10215 Ost4: Oligosaccaryltr 32.7 85 0.0018 18.6 3.3 25 142-168 9-33 (35)
81 TIGR00908 2A0305 ethanolamine 30.2 3.3E+02 0.0072 24.0 8.3 6 164-169 431-436 (442)
82 PF14927 Neurensin: Neurensin 29.3 2.3E+02 0.0051 22.0 6.2 25 98-122 43-67 (140)
83 PF01794 Ferric_reduct: Ferric 28.9 1.9E+02 0.0041 20.3 5.4 65 57-121 31-98 (125)
84 PF06645 SPC12: Microsomal sig 28.7 2E+02 0.0043 19.7 5.7 18 107-124 15-32 (76)
85 PF04238 DUF420: Protein of un 27.9 2.8E+02 0.006 21.2 9.7 87 23-122 27-127 (133)
86 PF08507 COPI_assoc: COPI asso 26.7 2.8E+02 0.006 20.8 11.8 47 75-121 38-84 (136)
87 COG4244 Predicted membrane pro 26.4 2.2E+02 0.0047 22.7 5.6 94 24-124 45-144 (160)
88 TIGR01191 ccmC heme exporter p 24.8 1.5E+02 0.0032 24.0 4.5 57 60-122 13-69 (184)
89 PF00558 Vpu: Vpu protein; In 24.4 81 0.0018 22.3 2.6 27 144-170 7-33 (81)
90 PF13630 SdpI: SdpI/YhfL prote 24.4 2.1E+02 0.0046 18.7 6.0 30 95-124 20-49 (76)
91 PF10951 DUF2776: Protein of u 24.0 5.1E+02 0.011 23.0 9.7 142 30-172 73-222 (347)
92 TIGR02125 CytB-hydogenase Ni/F 24.0 2.5E+02 0.0054 22.1 5.8 26 96-121 46-71 (211)
93 CHL00045 ccsA cytochrome c bio 23.8 4.9E+02 0.011 22.7 12.1 29 94-122 132-160 (319)
94 PRK10171 hydrogenase 1 b-type 22.9 3.7E+02 0.008 22.1 6.7 58 27-84 19-84 (235)
95 PF06609 TRI12: Fungal trichot 22.0 7.1E+02 0.015 23.9 9.5 58 64-122 196-259 (599)
96 PF03729 DUF308: Short repeat 21.6 2.2E+02 0.0048 17.9 7.6 40 77-122 6-45 (72)
97 MTH00033 CYTB cytochrome b; Pr 21.3 6.1E+02 0.013 22.8 9.7 64 58-122 23-100 (383)
98 PRK14485 putative bifunctional 20.9 3E+02 0.0065 27.0 6.5 50 73-122 66-117 (712)
99 COG4177 LivM ABC-type branched 20.8 4E+02 0.0087 23.2 6.8 30 146-175 161-194 (314)
100 PRK05419 putative sulfite oxid 20.7 4.7E+02 0.01 21.3 9.9 71 6-78 18-92 (205)
101 TIGR01583 formate-DH-gamm form 20.2 4.5E+02 0.0098 20.9 10.7 132 26-164 9-171 (204)
No 1
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=1.1e-54 Score=360.20 Aligned_cols=173 Identities=82% Similarity=1.322 Sum_probs=166.4
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCCCccchhhHHHHHHHHHHHHHHh
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWTKFHGIDG-VVANFYSLHSWMGLICVSLFGAQWM 79 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n~~~-~~~h~~S~HswlGl~t~~l~~lQ~~ 79 (179)
|++||+++++||||+||.+|++|+.+|.+|+++|.+|++|+++|+++++||+++ + |||||+|||+|++|+++|.+||+
T Consensus 58 MviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i-~nlySLHSWlGl~tv~Lf~lQwv 136 (242)
T PLN02351 58 MVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWTKFHGQDGIV-ANFYSLHSWMGLICVSLFGAQWL 136 (242)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-cchhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998888899999999999999999999999999765 7 99999999999999999999999
Q ss_pred hhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHHHHHh
Q 030324 80 MGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLSGFVI 159 (179)
Q Consensus 80 ~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~v~ 159 (179)
.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||..|.+.+++|+++++|++++|++|+++++|+++|+
T Consensus 137 ~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv 216 (242)
T PLN02351 137 TGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVI 216 (242)
T ss_pred HHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999999999
Q ss_pred hhhccCCCCCCCCCC
Q 030324 160 FAAVSPKSHVPVNKP 174 (179)
Q Consensus 160 ~~~~~~~~~r~~~~~ 174 (179)
+.+++|+||||+|+|
T Consensus 217 ~~~~~p~~kr~~~~~ 231 (242)
T PLN02351 217 LAAVLPKYQSHSSKL 231 (242)
T ss_pred HhhcCccccCCCccC
Confidence 999999999997654
No 2
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.9e-51 Score=337.43 Aligned_cols=168 Identities=35% Similarity=0.585 Sum_probs=160.1
Q ss_pred CeeehhhHhhhHHhhhccCCC-CCCchHHHHHHHHHHHHHHHHHHHhh--hhhccC--CCCCCccchhhHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPG-SRNLKKSVHLCLQGLALACGIFGIWT--KFHGID--GVVANFYSLHSWMGLICVSLFG 75 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~-~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~--~~~~h~~S~HswlGl~t~~l~~ 75 (179)
|++||+++|+||||+||+.|. +|+.+|.+|+++|.+|++|+++|+++ ++||++ ++ |||||+|||+|++|++++.
T Consensus 31 M~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~-~hfySlHSwlGl~t~~L~~ 109 (214)
T cd08764 31 MVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI-PNMYSLHSWLGLTAVILFS 109 (214)
T ss_pred HHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CcccchHHHHHHHHHHHHH
Confidence 889999999999999999886 67778999999999999999999988 578876 88 9999999999999999999
Q ss_pred HHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHH
Q 030324 76 AQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLS 155 (179)
Q Consensus 76 lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~ 155 (179)
+|++.|+++|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||.+|.+.+ |+++|+|++++|++|+++++|+
T Consensus 110 lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~--~~~~~~e~~l~N~~gl~~~~fg 187 (214)
T cd08764 110 LQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNK--YSNLPAEGVLGNFIGIVLVIFG 187 (214)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccCChhHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999864 9999999999999999999999
Q ss_pred HHHhhhhccCCCCCCC
Q 030324 156 GFVIFAAVSPKSHVPV 171 (179)
Q Consensus 156 ~~v~~~~~~~~~~r~~ 171 (179)
.+|++.+++|+||||+
T Consensus 188 ~~V~~~~~~~~~kr~~ 203 (214)
T cd08764 188 GLVVYLVTEPDYKRIE 203 (214)
T ss_pred HHHHHhccCcccCCCC
Confidence 9999999999999984
No 3
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=8.9e-51 Score=334.51 Aligned_cols=166 Identities=43% Similarity=0.777 Sum_probs=159.1
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFGAQW 78 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~ 78 (179)
|++||+++++||||+||..|.+|+.+|++|+.+|.+|++|+++|+++ ++||++++ |||||+|||+|++|++++.+||
T Consensus 54 Mv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i-~nlySLHSWlGl~tv~Lf~lQw 132 (231)
T PLN02810 54 MLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGI-ANLYSLHSWLGIGIISLYGIQW 132 (231)
T ss_pred HHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CceeeHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999889999999999999999999999999 77888899 9999999999999999999999
Q ss_pred hhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHHHHH
Q 030324 79 MMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLSGFV 158 (179)
Q Consensus 79 ~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~v 158 (179)
+.|+..|++|+.+++.|+.++|+|+++|+++|+++++|+.+|+.||.+|.+. ++|+++|+|++++|++|+++++|+.+|
T Consensus 133 ~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~-~~~~~~~~Ea~lvN~~Glliv~fg~~V 211 (231)
T PLN02810 133 IYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLES-GGLDKYGSEALLVNFTAIITILYGAFV 211 (231)
T ss_pred HHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999764 589999999999999999999999999
Q ss_pred hhhhccCCCC
Q 030324 159 IFAAVSPKSH 168 (179)
Q Consensus 159 ~~~~~~~~~~ 168 (179)
++.++.+...
T Consensus 212 ~~~~~~~~~~ 221 (231)
T PLN02810 212 VLTALAQSPS 221 (231)
T ss_pred HHhhccCCCC
Confidence 9999988654
No 4
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=8.3e-50 Score=330.26 Aligned_cols=167 Identities=51% Similarity=0.984 Sum_probs=159.9
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFGAQW 78 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~ 78 (179)
|++||+++++||||+||+.|++|+.+|++|+++|.+|++|+++|+++ ++||++++ |||||+|||+|++|++++.+||
T Consensus 54 M~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-~nfySlHSWlGl~t~iL~~lQ~ 132 (232)
T PLN02680 54 MVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-DNFYSLHSWLGLACLFLFSLQW 132 (232)
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cccccHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999899999999999999999999999999 67777899 9999999999999999999999
Q ss_pred hhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHHHHH
Q 030324 79 MMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLSGFV 158 (179)
Q Consensus 79 ~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~v 158 (179)
+.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||..|.+++++|+++++|++++|++|+++++|+++|
T Consensus 133 ~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V 212 (232)
T PLN02680 133 AAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFV 212 (232)
T ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999887789999999999999999999999999
Q ss_pred hhhhccCCCC
Q 030324 159 IFAAVSPKSH 168 (179)
Q Consensus 159 ~~~~~~~~~~ 168 (179)
++.++.|...
T Consensus 213 ~~~v~~p~~~ 222 (232)
T PLN02680 213 ILAIVTPLNG 222 (232)
T ss_pred HHhhcccccc
Confidence 9999997433
No 5
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=2e-49 Score=326.54 Aligned_cols=173 Identities=43% Similarity=0.724 Sum_probs=165.7
Q ss_pred CeeehhhHhhhHHhhhccCCC-CCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPG-SRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFGAQ 77 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~-~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ 77 (179)
|++|||+++|||+|+||.+|+ +|+.+|.+|..||..|++++++|+.+ ++||+.++ +||||+|||+|+++++++.+|
T Consensus 62 MviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i-~NfySLHSWlGl~~v~ly~~Q 140 (245)
T KOG1619|consen 62 MVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI-ANFYSLHSWLGLCVVILYSLQ 140 (245)
T ss_pred HHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-cceeeHHHHHHHHHHHHHHHH
Confidence 889999999999999999876 99999999999999999999999999 77888899 999999999999999999999
Q ss_pred HhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHHHH
Q 030324 78 WMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLSGF 157 (179)
Q Consensus 78 ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~ 157 (179)
|+.||.+|++|+.+++.|++++|+|+++|+.+|+++++|+.+|+.||+.|...+ +++.+++|++++|++|+++++|+.+
T Consensus 141 ~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~-~~s~~~~e~~l~n~~gv~~il~g~~ 219 (245)
T KOG1619|consen 141 WVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFG-DLSTKNPEGYLVNFLGVFIILFGVL 219 (245)
T ss_pred HHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999886 8999999999999999999999999
Q ss_pred HhhhhccCCCCCCCCCCC
Q 030324 158 VIFAAVSPKSHVPVNKPK 175 (179)
Q Consensus 158 v~~~~~~~~~~r~~~~~~ 175 (179)
|++.+++|+|+||.+++|
T Consensus 220 Vl~~v~~~~~kr~s~~~e 237 (245)
T KOG1619|consen 220 VLTLVTPPPWKRPSEPEE 237 (245)
T ss_pred heEEEecCCCCCCCCcHH
Confidence 999999999999954443
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.4e-41 Score=264.24 Aligned_cols=128 Identities=60% Similarity=1.074 Sum_probs=121.8
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFGAQW 78 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~ 78 (179)
|++||+++|+||||+||+.|.+|+.+|++|+++|.+|++|+++|+++ ++||++++ |||||+|||+|++|++++.+|+
T Consensus 15 M~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~-~~~~SlHSwlGl~t~~L~~lQ~ 93 (144)
T cd08766 15 MVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGI-PNLYSLHSWLGIGTISLFGLQW 93 (144)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-cccccHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999899999999999999999999999999 55667788 9999999999999999999999
Q ss_pred hhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 030324 79 MMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQ 129 (179)
Q Consensus 79 ~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~ 129 (179)
+.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||..|.+
T Consensus 94 ~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~~ 144 (144)
T cd08766 94 LFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFLQ 144 (144)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998888999999999999999999999999999999988864
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=5.2e-41 Score=263.02 Aligned_cols=129 Identities=38% Similarity=0.604 Sum_probs=121.6
Q ss_pred CeeehhhHhhhHHhhhccCC---CCCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLP---GSRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFG 75 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~---~~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~ 75 (179)
|++||+++|+||||+||..+ .+|+.+|++|+++|++|++|+++|+.+ ++||++++ |||||+|||+|++|++++.
T Consensus 19 m~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~-~~fySlHSwlGl~t~~l~~ 97 (153)
T cd08765 19 MVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI-PNMYSLHSWVGLAAVILYP 97 (153)
T ss_pred HHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CccccHHHHHHHHHHHHHH
Confidence 78999999999999999654 368999999999999999999999998 67788899 9999999999999999999
Q ss_pred HHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 030324 76 AQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQT 130 (179)
Q Consensus 76 lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~ 130 (179)
+||+.|+.+|++|+.+.+.|++++|+|+++|+++|+++++|+.+|+.||..|..+
T Consensus 98 lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 98 LQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999988889999999999999999999999999999999999754
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=7.6e-41 Score=267.29 Aligned_cols=130 Identities=37% Similarity=0.580 Sum_probs=123.6
Q ss_pred CeeehhhHhhhHHhhhccCCC---CCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPG---SRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFG 75 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~---~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~ 75 (179)
|++||+++++||||+||..++ +|+.+|++|+++|.+|++|+++|+++ ++||++++ ||+||+|||+|++|++++.
T Consensus 42 Mv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~-~nlySlHSWlGl~t~~Lf~ 120 (179)
T cd08762 42 MVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHT-ANLYSLHSWVGICTVALFT 120 (179)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cchhhHHHHHHHHHHHHHH
Confidence 889999999999999997653 78889999999999999999999999 77888899 9999999999999999999
Q ss_pred HHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcc
Q 030324 76 AQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTR 131 (179)
Q Consensus 76 lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~ 131 (179)
+||+.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||..|..++
T Consensus 121 lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek~~f~~~~ 176 (179)
T cd08762 121 CQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEKLFFSLKN 176 (179)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999998764
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=3.1e-40 Score=256.49 Aligned_cols=126 Identities=34% Similarity=0.603 Sum_probs=120.4
Q ss_pred CeeehhhHhhhHHhhhccCCC-CCCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCCCCCccchhhHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPG-SRNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGVVANFYSLHSWMGLICVSLFGAQ 77 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~-~~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ 77 (179)
|++||+++++||+|+||++|. +|+.+|++|+++|.+|++|+++|+.+ ++||++++ |||||+|||+|++|++++.+|
T Consensus 14 m~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~-~hf~SlHswlGl~t~~L~~lQ 92 (143)
T cd08763 14 MVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGY-PDMYSLHSWCGILTFVLYFLQ 92 (143)
T ss_pred HHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CccccHHHHHHHHHHHHHHHH
Confidence 789999999999999999885 88889999999999999999999999 66777889 999999999999999999999
Q ss_pred HhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 030324 78 WMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTF 127 (179)
Q Consensus 78 ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f 127 (179)
++.|+..|++|+.+++.|++++|+||++|+++|+++++|+.+|+.||.+|
T Consensus 93 ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f 142 (143)
T cd08763 93 WLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLF 142 (143)
T ss_pred HHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998889999999999999999999999999999999776
No 10
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.96 E-value=2.6e-29 Score=191.71 Aligned_cols=127 Identities=37% Similarity=0.494 Sum_probs=116.6
Q ss_pred CeeehhhHhhhHHhhhcc--CCC-CCCchHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRW--LPG-SRNLKKSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFG 75 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~--~~~-~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~ 75 (179)
|++||+++++||++++|. .+. +|+.++++|+.+|.++++++++|+.+.+.+ ++++ +||+|+|+|+|+++++++.
T Consensus 6 m~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~-~h~~s~H~~lG~~~~~l~~ 84 (137)
T PF03188_consen 6 MTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGK-PHFKSWHSILGLATFVLAL 84 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCCchhhhhHHHHHHHH
Confidence 789999999999999996 333 788899999999999999999999996655 4578 9999999999999999999
Q ss_pred HHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 030324 76 AQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFL 128 (179)
Q Consensus 76 lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~ 128 (179)
+|++.|++.++.|+.+++.|+.+.++|+++|+++++++++|+.+|+.|+.||+
T Consensus 85 ~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f~ 137 (137)
T PF03188_consen 85 LQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWFK 137 (137)
T ss_pred HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888777788889999999999999999999999999999985
No 11
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.96 E-value=3.8e-29 Score=190.35 Aligned_cols=120 Identities=41% Similarity=0.639 Sum_probs=110.7
Q ss_pred CeeehhhHhhhHHhhhccCCC-CCCchHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPG-SRNLKKSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFGAQ 77 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~-~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~lQ 77 (179)
|++||+++++||++++|.++. +|+.++++|+.+|.++++++++|+.+++.| ++++ +||+|+|||+|+++++++++|
T Consensus 9 m~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~-~h~~s~Hs~lGl~~~~l~~~q 87 (131)
T cd08554 9 MVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGI-ANLYSLHSWLGLATVLLFLLQ 87 (131)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-ccchhHHHHHHHHHHHHHHHH
Confidence 789999999999999999865 788899999999999999999999996655 4677 999999999999999999999
Q ss_pred HhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 78 WMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 78 ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
++.|+..++.|+.+++.|+...++|+++|+++++++++|+.+|+
T Consensus 88 ~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 88 FLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999866666888999999999999999999999985
No 12
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.96 E-value=1.4e-28 Score=197.32 Aligned_cols=128 Identities=28% Similarity=0.390 Sum_probs=113.7
Q ss_pred CeeehhhHhhhHHhhhccCC----CCCCchHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLP----GSRNLKKSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLF 74 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~----~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~ 74 (179)
|++||+++|+||++.+|... .+|+.++++|+++|.++++++++|+.+.+.| ++++ +||+|+|||+|+++++++
T Consensus 28 m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~-~hf~s~H~~lGl~~~~l~ 106 (183)
T cd08761 28 MSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGK-PHFTSWHGILGLVTVILI 106 (183)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCccchhHHHHHHHHHHH
Confidence 78999999999999988532 2788889999999999999999999996544 5678 999999999999999999
Q ss_pred HHHHhhhhHHHhhccccc--cccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 030324 75 GAQWMMGFLSFWHRAEVR--MTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQT 130 (179)
Q Consensus 75 ~lQ~~~G~~~fl~p~~~~--~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~ 130 (179)
++|++.|+..++.|...+ +.|+.+.++||++|+++++++++|+.+|++|+ +|+++
T Consensus 107 ~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~-~f~~~ 163 (183)
T cd08761 107 VLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLETR-WFSKN 163 (183)
T ss_pred HHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhh
Confidence 999999999998887654 56777889999999999999999999999985 67655
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.95 E-value=7.8e-28 Score=182.93 Aligned_cols=120 Identities=42% Similarity=0.625 Sum_probs=108.0
Q ss_pred CeeehhhHhhhHHhhhcc-CC-CCCCchHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRW-LP-GSRNLKKSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFGA 76 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~-~~-~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~l 76 (179)
|++||++++|||++++|. .+ .+|+.++++|+.+|.+|++++++|+.+++.+ ++++ +|++|+|||+|+++++++++
T Consensus 6 m~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~-~~~~s~H~~lGl~~~~l~~~ 84 (129)
T smart00665 6 MILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGI-ANFYSLHSWLGLAAFVLAGL 84 (129)
T ss_pred HHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CCccchhHHHHHHHHHHHHH
Confidence 789999999999999995 44 3788899999999999999999999996544 4567 89999999999999999999
Q ss_pred HHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 77 QWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 77 Q~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
|++.|+..+..|+.+.+.|+.+.++|+++|+++++++++|+.+|+
T Consensus 85 Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 85 QWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999988777655667888889999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=5.6e-21 Score=153.92 Aligned_cols=120 Identities=23% Similarity=0.180 Sum_probs=106.3
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCccchhhHHHHHHHHHHHHHHh
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWTKFHGI-DGVVANFYSLHSWMGLICVSLFGAQWM 79 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n~-~~~~~h~~S~HswlGl~t~~l~~lQ~~ 79 (179)
|++||++++|+|+++.|.++.+++.+.++|+.+|+++++++++|+.+.+.++ .+. +|+++.|+|+|++++++.++|++
T Consensus 43 m~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~-~~~~~~H~~lGl~~~~l~~lQ~~ 121 (191)
T cd08760 43 MAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGG-GSLNNAHAILGIIVLALAILQPL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCcCcchhhhHHHHHHHHHHHH
Confidence 7899999999999999986557778889999999999999999999966654 566 89999999999999999999999
Q ss_pred hhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 80 MGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 80 ~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
.|++ .|...++.|+.+.+.|+++|+++++++++|+.+|+.+.
T Consensus 122 ~G~~---~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~ 163 (191)
T cd08760 122 LGLL---RPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLA 163 (191)
T ss_pred HHHh---cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9994 45544557777889999999999999999999999854
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.12 E-value=9.5e-06 Score=60.07 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=60.4
Q ss_pred CeeehhhHhhhHHhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhh-hccCCCCCCc--cchhhHHHHHHHHHHHHH
Q 030324 1 MVIGFIIISGEAILVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWTKF-HGIDGVVANF--YSLHSWMGLICVSLFGAQ 77 (179)
Q Consensus 1 M~igfv~l~~eaiL~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~~~-~n~~~~~~h~--~S~HswlGl~t~~l~~lQ 77 (179)
|+++|++++|-+++. +..+ -+.|...|++++++.++|+.... +++ .. ||+ .+.|+.+|.+.+++.+.|
T Consensus 25 m~la~~il~Pi~lvL-~~~~------sr~~~~~q~~~~~l~~~g~~~g~~~~~-~~-p~lyp~n~H~k~g~il~~l~~~q 95 (105)
T PF10348_consen 25 MTLAWVILYPIGLVL-GNAR------SRWHLPVQTVFLVLMILGLFLGSVYNG-ST-PDLYPNNAHGKMGWILFVLMIVQ 95 (105)
T ss_pred HHHHHHHHHHHHHHH-HHcc------chHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCCCHHHHHHHHHHHHHHHH
Confidence 678899999999774 4433 23599999999999999999943 332 23 555 899999999999999999
Q ss_pred HhhhhHH
Q 030324 78 WMMGFLS 84 (179)
Q Consensus 78 ~~~G~~~ 84 (179)
.+.|++.
T Consensus 96 ~~~gv~~ 102 (105)
T PF10348_consen 96 VILGVIL 102 (105)
T ss_pred HHHHHHH
Confidence 9999965
No 16
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=96.85 E-value=4.9e-05 Score=68.21 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=93.1
Q ss_pred eehhhHhhhHHhhhccCCCC---CCchHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCCccchhhHHHHHHHHHHHHHH
Q 030324 3 IGFIIISGEAILVHRWLPGS---RNLKKSVHLCLQGLALACGIFGIWTKFHG-IDGVVANFYSLHSWMGLICVSLFGAQW 78 (179)
Q Consensus 3 igfv~l~~eaiL~~r~~~~~---~~~~k~iH~~Lq~la~~~~~iGl~~~~~n-~~~~~~h~~S~HswlGl~t~~l~~lQ~ 78 (179)
.+..++++-+++.-|.++.. ...+-.+|..+|..++++...|+...-.. +... ..-++.|.-+|+.+.++-++|+
T Consensus 221 ~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~-~~~~~~h~~~G~~~~~l~~lQ~ 299 (403)
T KOG4293|consen 221 LSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESD-GTVYSAHTDLGIILLVLAFLQP 299 (403)
T ss_pred hhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCC-ceeeeecccchhHHHHHHHHHH
Confidence 44566777777777776643 67789999999999988888888883322 2234 5679999999999999999999
Q ss_pred hhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 79 MMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 79 ~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
+..+ +-|....+.|+..=.+|+..|+...+++.+++..|+.
T Consensus 300 ~~~l---~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~ 340 (403)
T KOG4293|consen 300 LALL---LRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLE 340 (403)
T ss_pred HHHH---hcCCcccCceeccceeeeecCcceeeehhhHHhhhHh
Confidence 9887 4466455557777799999999999999999999987
No 17
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.82 E-value=0.022 Score=42.86 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=65.1
Q ss_pred HHHHHHHHHH-HHHHHHHhh-hh-hccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHH
Q 030324 29 VHLCLQGLAL-ACGIFGIWT-KF-HGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFL 105 (179)
Q Consensus 29 iH~~Lq~la~-~~~~iGl~~-~~-~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~ 105 (179)
.|..+.++|+ ++.-.|+.. .+ .+..+. +....+|-++..+++++.+.-...++.. + ....++...-.|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~-~~~~~~H~~lq~~a~~~~~~g~~~~~~~----~-~~~~~~~~~s~H~~l 74 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSK-PTWFLLHVVLQILALVLGVIGLLAIFIS----H-NESGIANFYSLHSWL 74 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH----c-cccCCCCccchhHHH
Confidence 4899999999 445566666 32 233455 6778899999999888877666655532 1 111234566889999
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 030324 106 GLYTYGLAVATAETGLLE 123 (179)
Q Consensus 106 G~~~f~la~~t~~lG~~e 123 (179)
|++++++.......|+..
T Consensus 75 Gl~~~~l~~~Q~~~G~~~ 92 (129)
T smart00665 75 GLAAFVLAGLQWLSGFLR 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 18
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.55 E-value=0.058 Score=40.54 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH-HHHHHHhh-hhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHH
Q 030324 28 SVHLCLQGLALA-CGIFGIWT-KFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFL 105 (179)
Q Consensus 28 ~iH~~Lq~la~~-~~~iGl~~-~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~ 105 (179)
..|..++.++++ +...|+.. .+-+..++ +...-+|..+..+++.+.+.-...++.. + ..+.++...-.|.++
T Consensus 3 ~~H~~lm~~g~~~l~~~~il~~r~~~~~~~-~~~~~~H~~l~~l~~~~~~~G~~~~~~~----~-~~~~~~h~~s~Hs~l 76 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALLVYRVFRLLTK-RALKLLHAILHLLAFVLGLVGLLAVFLF----H-NAGGIANLYSLHSWL 76 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cccCcccchhHHHHH
Confidence 369999999986 66666666 22233334 5567899999998887776544444422 1 122344456789999
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 030324 106 GLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 106 G~~~f~la~~t~~lG~~ek 124 (179)
|++++++..+....|+...
T Consensus 77 Gl~~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 77 GLATVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998853
No 19
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.52 E-value=0.051 Score=42.29 Aligned_cols=144 Identities=18% Similarity=0.090 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh---c---cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHH---------------
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFH---G---IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLS--------------- 84 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~---n---~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~--------------- 84 (179)
.+..||..=.+-+++.+.|+...+. . ..+. .....+|-++|++...+.++..+.++..
T Consensus 8 ~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~-~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGR-QLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 4689999999999999999998432 1 1234 5789999999999999999999999866
Q ss_pred --HhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCch--HHH---HHHHHHHHHHHHH
Q 030324 85 --FWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPES--MVV---NSLGLGLALLSGF 157 (179)
Q Consensus 85 --fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~--~~~---n~~gl~~~~~~~~ 157 (179)
...+..++..++...+..+..-.+.+.+..+..++|+.--.++..........+++. ... ...+.+++++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221222334455788888888888888889999874000111100011111111 111 5667777788888
Q ss_pred HhhhhccCCCCCC
Q 030324 158 VIFAAVSPKSHVP 170 (179)
Q Consensus 158 v~~~~~~~~~~r~ 170 (179)
-++.....++.++
T Consensus 167 Hi~~a~~~~~~~~ 179 (188)
T PF00033_consen 167 HIYAAIFHHFRWR 179 (188)
T ss_dssp HHHHHHHBT----
T ss_pred HHHHHHHHhhcch
Confidence 8888877766543
No 20
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.51 E-value=0.062 Score=40.41 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhh---ccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHH
Q 030324 29 VHLCLQGLALACGI-FGIWTKFH---GIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIF 104 (179)
Q Consensus 29 iH~~Lq~la~~~~~-iGl~~~~~---n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~ 104 (179)
.|.+++++|+.+.. .|+.+... +..+. +.....|..+-.+++++.++-....+.. + ..+.++...-.|.+
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~-~~~~~~H~~lq~l~~~~~~~G~~~~~~~----~-~~~~~~h~~s~H~~ 74 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSR-KWWFRIHWILQVLALVFAIIGFVAIFIN----K-NRNGKPHFKSWHSI 74 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cccCCCCCCCchhh
Confidence 49999999998655 66666222 23455 6778999999988777766544444422 1 22223445578999
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 030324 105 LGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 105 ~G~~~f~la~~t~~lG~~ek 124 (179)
+|++++++.......|+...
T Consensus 75 lG~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 75 LGLATFVLALLQPLLGFFRF 94 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 21
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.05 E-value=0.093 Score=42.24 Aligned_cols=89 Identities=24% Similarity=0.182 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh----hhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhh
Q 030324 25 LKKSVHLCLQGLALACGIFGIWT----KFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLP 100 (179)
Q Consensus 25 ~~k~iH~~Lq~la~~~~~iGl~~----~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~ 100 (179)
..+..|.-+-...+.....|..- .+.+.+ +=|.|.|-|.|+..+.|...+....- ...++.++..+.
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~---~lf~spH~~~Gl~~~~L~~~s~al~~------~i~~g~~~~~R~ 148 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNG---KLFWSPHLWAGLAVVGLMAFSAALVP------QIQKGNRPWARR 148 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC---CCccCchHHHHHHHHHHHHHHHHHHH------HHccCCchhHHH
Confidence 34567776655555554444444 223322 34899999999999999988766544 222222456677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 030324 101 WHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 101 ~H~~~G~~~f~la~~t~~lG~~ 122 (179)
.|...+....++-..-..+|..
T Consensus 149 lHi~lN~~~l~Lf~~q~itG~~ 170 (175)
T PF13301_consen 149 LHIYLNSLALLLFAWQAITGWR 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976
No 22
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.73 E-value=0.44 Score=38.06 Aligned_cols=96 Identities=22% Similarity=0.223 Sum_probs=70.2
Q ss_pred CCCchHHHHHHHHHHHHHHHH-HHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhh
Q 030324 22 SRNLKKSVHLCLQGLALACGI-FGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLP 100 (179)
Q Consensus 22 ~~~~~k~iH~~Lq~la~~~~~-iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~ 100 (179)
+++.....|.+++.+|+.+.. +|+.+.-+.+.+. +...-+|..+=++++++.+.-...|+... ...++...-
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~-~~~~~~H~~~q~~~~~~~i~g~~~~~~~~------~~~~~~~~~ 103 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGD-PVWFYLHAGLQLLAVLLAIAGFVLGIVLV------QGGGGSLNN 103 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCCcC
Confidence 345567899999999998765 6666532212223 34455899999988888887777777443 122344567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 101 WHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 101 ~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
.|..+|++++++.+.....|+..+
T Consensus 104 ~H~~lGl~~~~l~~lQ~~~G~~~~ 127 (191)
T cd08760 104 AHAILGIIVLALAILQPLLGLLRP 127 (191)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998644
No 23
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.38 E-value=0.44 Score=37.97 Aligned_cols=130 Identities=20% Similarity=0.107 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc--c---CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhh
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHG--I---DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLP 100 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n--~---~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~ 100 (179)
....|..++.+++.+..-.....++. . .++ +.-..+|.++..+++.+.+. |+..-+..+ ....++-+.-
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~-~~~~~~H~~l~~la~~~~~~----G~~~~~~~~-~~~~~~hf~s 93 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLAR-KTKVRLHWILQLLALLCILA----GLVAIYYNK-ERNGKPHFTS 93 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhh-hhhHHHHHHHHHHHHHHHHH----HHHHHHHhc-ccCCCCCccc
Confidence 34689999999998665544443321 1 245 56688999999988877664 332322212 2223445667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHH-HHHHHHHHHHHHHHhhhhc
Q 030324 101 WHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVV-NSLGLGLALLSGFVIFAAV 163 (179)
Q Consensus 101 ~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~-n~~gl~~~~~~~~v~~~~~ 163 (179)
+|.++|+.++++.+.+...|+.... .....++. +.++.-... ...|..+.+.+.+-+..=.
T Consensus 94 ~H~~lGl~~~~l~~~Q~~~G~~~~~-~~~~~~~~-~~r~~~~~~H~~~G~~~~~l~~~t~~lGl 155 (183)
T cd08761 94 WHGILGLVTVILIVLQALGGLALLY-PPGLRRGE-SKAKKLKKYHRLSGYVAYLLGLATLVLGL 155 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHh-hHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999997541 11111111 111111122 5677777666665554433
No 24
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.24 E-value=0.5 Score=36.76 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHH
Q 030324 27 KSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIF 104 (179)
Q Consensus 27 k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~ 104 (179)
-..|-.++.+++++...--...++. ..++ +...-.|.+++++++++.. .|+..-+..+ .+...+-+.-.|-|
T Consensus 7 Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k-~~~k~~H~~L~~la~~~~~----~Gl~av~~~h-~~~~~~hf~SlHsw 80 (143)
T cd08763 7 FNVHPLCMVLGLVFLCGEALLVYRVFRNETK-RSTKILHGLLHIMALVISL----VGLVAVFDYH-QANGYPDMYSLHSW 80 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccHHHH
Confidence 3479999999998554433333322 1233 4457799999998887755 4554433222 22335567789999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHH-H-HHHHHHHHHHHHHHh
Q 030324 105 LGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMV-V-NSLGLGLALLSGFVI 159 (179)
Q Consensus 105 ~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~-~-n~~gl~~~~~~~~v~ 159 (179)
+|+.++++-......|+..- +|.... ++ .++... . ...|+.+.+.+....
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f-~~P~~~---~~-~r~~~~p~H~~~G~~~f~la~~t~ 132 (143)
T cd08763 81 CGILTFVLYFLQWLIGFSFF-LFPGAS---FT-LRSQYKPLHEFFGRALFLSSVGTS 132 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCCCc---hH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998632 232211 11 122222 1 566777655544433
No 25
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=95.08 E-value=0.027 Score=33.91 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=27.5
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhHHHhhcc
Q 030324 58 NFYSLHSWMGLICVSLFGAQWMMGFLSFWHRA 89 (179)
Q Consensus 58 h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~ 89 (179)
.+..+|.|+|+++-.++++-.+.|.+..+.|.
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~e 34 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFRDE 34 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 46789999999999999999999998877654
No 26
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.09 E-value=2.8 Score=34.79 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHh-hccccccccchhhhH
Q 030324 26 KKSVHLCLQGLALACG-IFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFW-HRAEVRMTRVRVLPW 101 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~-~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl-~p~~~~~~r~~~~~~ 101 (179)
.-..|-.++.+++++. .-++.+ ++. ...+ ......|..+.++++++... |+..-+ ..+..+...+.+.-.
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAiLv-yr~~~~~~k-~~~k~~H~~L~~lAl~~~iv----Gl~avf~~hn~~~~~~~hfySl 96 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSILV-YRVFRNTRK-KRLKLLHAVLHLLAFILAVI----GLKAVFDSHNLAKPPIPNMYSL 96 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHHHH-hccCccccc-hhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccCCCCcccch
Confidence 3468999999999543 333333 322 1223 34567999999988887654 443322 222222234556789
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 030324 102 HIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 102 H~~~G~~~f~la~~t~~lG~~e 123 (179)
|-|+|+.++++-......|+..
T Consensus 97 HSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 97 HSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999964
No 27
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.11 E-value=6 Score=30.76 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHH-HHhhhhhc-cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHH
Q 030324 26 KKSVHLCLQGLALACGIF-GIWTKFHG-IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHI 103 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~i-Gl~~~~~n-~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~ 103 (179)
.-..|-.++.+++++... ++.+ ++. ...+ +.-...|.++=++++.+.. .|+..-+.-+ ....++.+.-+|-
T Consensus 7 ~Fn~HP~lM~~gfi~l~~eAiL~-~r~~~~~k-~~~k~iH~~l~~la~~~~v----vGl~avf~~~-~~~~~~~~~SlHS 79 (144)
T cd08766 7 IFNVHPVLMVIGFIFLAGEAILA-YKTVPGSR-EVQKAVHLTLHLVALVLGI----VGIYAAFKFH-NEVGIPNLYSLHS 79 (144)
T ss_pred eeeccHHHHHHHHHHHHHHHHHH-hhcccccc-chhHHHHHHHHHHHHHHHH----HHHHHHHHHh-cccCccccccHHH
Confidence 345799999999855443 4433 322 2223 3346789998887776654 4554433222 2233555778999
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 030324 104 FLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 104 ~~G~~~f~la~~t~~lG~~e 123 (179)
|+|+.++++-......|+..
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=90.93 E-value=6.7 Score=32.99 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-hhhc-cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHH
Q 030324 26 KKSVHLCLQGLALACGIFGIWT-KFHG-IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHI 103 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~-~~~n-~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~ 103 (179)
.-..|=.++.+++++. .|-.+ .++. ...+ +.-+..|-.+=.+++++.. .|+..-+... ..+.++.+.-+|-
T Consensus 46 ~Fn~HPlLM~~Gfi~l-~geAIL~yr~~~~~k-~~~K~iH~~L~~lA~~l~v----vGl~avfk~h-n~~~~~nfySlHS 118 (232)
T PLN02680 46 IFNVHPVLMVIGLVLL-NGEAMLAYKTVPGTK-NLKKLVHLTLQFLAFCLSL----IGVWAALKFH-NEKGIDNFYSLHS 118 (232)
T ss_pred eEechHHHHHHHHHHH-HHHHHhccccccccc-hhHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCccccccHHH
Confidence 3468999999999994 44444 4443 2223 4457889988887777664 4554433222 2234566778999
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 030324 104 FLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 104 ~~G~~~f~la~~t~~lG~~e 123 (179)
|+|+.++++-......|+..
T Consensus 119 WlGl~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 119 WLGLACLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985
No 29
>PRK11513 cytochrome b561; Provisional
Probab=90.36 E-value=2.4 Score=33.70 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccc----hhhhH
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRV----RVLPW 101 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~----~~~~~ 101 (179)
.+.+||..-.+-+.....|...+...+... +.++++|-.+|++++.+.+.-.+..+. .--|..+...++ .-.-.
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~~~~-~~~~~~H~s~G~~vl~L~v~Rl~~r~~-~~~P~~~~~~~~~~~~~A~~~ 86 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPRSDR-PLINMIHVSCGISILVLMVVRLLLRLK-YPTPPIVPKPKPMMTGLAHLG 86 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHHHHH
Confidence 468999654333333333333221111122 356799999999999999999999983 223332222111 11234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 030324 102 HIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 102 H~~~G~~~f~la~~t~~lG~~e 123 (179)
| .+.|++-++..++|+..
T Consensus 87 H----~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 87 H----LVIYLLFIALPVIGLVM 104 (176)
T ss_pred H----HHHHHHHHHHHHHHHHH
Confidence 5 56777777777788763
No 30
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=88.46 E-value=0.89 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.230 Sum_probs=24.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 95 RVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 95 r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
|+....+|++.|+...+..+.-+.+|..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999875
No 31
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=87.53 E-value=1 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.174 Sum_probs=24.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 030324 95 RVRVLPWHIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 95 r~~~~~~H~~~G~~~f~la~~t~~lG~~e 123 (179)
|+.+...|+|+|+.+-++-.+-+.+|-.-
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44567899999999999999999999763
No 32
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=87.51 E-value=2.9 Score=32.14 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHH---HHHHHHHhhhhHHHh---hccccccccchhh--
Q 030324 28 SVHLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICV---SLFGAQWMMGFLSFW---HRAEVRMTRVRVL-- 99 (179)
Q Consensus 28 ~iH~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~---~l~~lQ~~~G~~~fl---~p~~~~~~r~~~~-- 99 (179)
.+.+.+..++.++..+|..++-+++ ...|...=+++. .+|+..++..-...- +++ +...|..+.
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~-------~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g-~~~ir~~Y~~i 77 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGR-------IKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGG-PGWIRPVYLFI 77 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-CccHHHHHHHH
Confidence 5778899999999999999964332 233444333322 233333433321110 111 334566543
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 030324 100 -PWHIFLGLYTYGLAVATAETGLLEKLTFLQT 130 (179)
Q Consensus 100 -~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~ 130 (179)
-.|..+-..+..+...|...|+.++ +++.
T Consensus 78 L~~Hi~LA~~~~pL~l~tl~~a~~~~--~~~H 107 (133)
T PF04238_consen 78 LISHIILAIVALPLVLYTLYRALRGR--FTRH 107 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--hHHH
Confidence 6899999999999999999999876 5544
No 33
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=87.45 E-value=4.7 Score=28.99 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhhHH-HhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 66 MGLICVSLFGAQWMMGFLS-FWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 66 lGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
+|.+.+.++.++.+.|.=. .+-+. ......+...+||+.|+..++++++=...=+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~-~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~ 56 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARL-TGISFDRLLRFHRWLGRLAFFLALLHGVLYL 56 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888866211 11111 1111233456999999999998887654433
No 34
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=87.26 E-value=4 Score=28.60 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 98 VLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 98 ~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..-+|+..|........+-+.+|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999975
No 35
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=85.05 E-value=20 Score=29.40 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=45.3
Q ss_pred hhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 030324 48 KFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAE 118 (179)
Q Consensus 48 ~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~ 118 (179)
...+..|. +-..+.--..|..++.+++++...+-+.-..+ ...+..+||.+|+..|..+..=..
T Consensus 30 ~~~~~lg~-~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 30 GATGGLGA-DPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred HHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454455 44566777889999999998888866432221 135779999999999998777653
No 36
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=84.96 E-value=10 Score=29.17 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhHHHhh---ccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 030324 69 ICVSLFGAQWMMGFLSFWH---RAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 69 ~t~~l~~lQ~~~G~~~fl~---p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~e 123 (179)
+..+++..|.+.|+..+.- .......++....+|..+|++..++.+.=...++.+
T Consensus 14 ~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 14 LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777788889866532 122233456677999999999999999999999887
No 37
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=84.76 E-value=16 Score=28.10 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCc---cchhhHHHHHHHHHHHHHHhhhhHHHhhccc-----------
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGI-DGVVANF---YSLHSWMGLICVSLFGAQWMMGFLSFWHRAE----------- 90 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~-~~~~~h~---~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~----------- 90 (179)
.+..||..=..-+.+...|+.....++ .+. ... ..+|-++|++...+.+.=.... .....|+.
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~-~~~~~~~~~H~~~G~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 83 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYF-GDFGGVRNWHVIAGLLLFALLIFRLLWR-WRRLFPWSDDVFFQVKNYL 83 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchHHhHHHHHHHHHHHHHHHHHHHH-HHhhcccchhhHHHHHHHH
Confidence 357999999999999999998844332 222 222 7899999998888776555544 01111110
Q ss_pred ------cccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccC---CCCchHH---H-HHHHHHHHHHHHH
Q 030324 91 ------VRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYK---SCPESMV---V-NSLGLGLALLSGF 157 (179)
Q Consensus 91 ------~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~---~~~~~~~---~-n~~gl~~~~~~~~ 157 (179)
+.......-+.-+..-.+.+++..+...+|+.-. +... ++.+. ....... + ...+..++.+..+
T Consensus 84 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~--~~~~-~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~ 160 (182)
T PF01292_consen 84 YFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLW--FASA-EGFPLFAASPGGAQIARSVHFFLAWLLIAFIIL 160 (182)
T ss_pred HHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHH--Hhhc-ccCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112224444566677777778888887632 2211 11211 1111111 1 4667777778777
Q ss_pred HhhhhccCCCC
Q 030324 158 VIFAAVSPKSH 168 (179)
Q Consensus 158 v~~~~~~~~~~ 168 (179)
-++.+....+.
T Consensus 161 Hv~~a~~~~~~ 171 (182)
T PF01292_consen 161 HVYAALFHHFR 171 (182)
T ss_pred HHHHHHHHhhh
Confidence 77777665543
No 38
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=84.16 E-value=19 Score=28.60 Aligned_cols=141 Identities=9% Similarity=0.043 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccC---C------CCCCccchhhHHHHHHHHHHHHHHhhhhHHH---h----h--
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGID---G------VVANFYSLHSWMGLICVSLFGAQWMMGFLSF---W----H-- 87 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~~---~------~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~f---l----~-- 87 (179)
.+..||..=..-+++.+.|+.....-.. + . .....+|-++|++...+.+.=.+.++..- . .
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~G~~~~~l~l~rl~~~~~~~~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQ-GYIRFVHFAAGFVLIAVLLFRVYLAFVGKDSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHhhcC
Confidence 3578998877777888888876321110 1 1 23568999999988887776665565330 0 0
Q ss_pred ccccccc-c---------------chhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc-ccCc-----cC----CCCch
Q 030324 88 RAEVRMT-R---------------VRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQT-RRNV-----YK----SCPES 141 (179)
Q Consensus 88 p~~~~~~-r---------------~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~-~~~~-----~~----~~~~~ 141 (179)
|...+.+ + ..+-+.-+..-...+++..+..++|+.-- +... ..+. .+ .+.+.
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~ 163 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLALY--YYHNGLGGLLPSLFGWVEPLFGGLA 163 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhcCCCCchHHHHHHHHHHHhCChH
Confidence 1000000 0 00124555666677778888888887622 1000 0000 00 00111
Q ss_pred --HHH-HHHHHHHHHHHHHHhhhhccCCCCC
Q 030324 142 --MVV-NSLGLGLALLSGFVIFAAVSPKSHV 169 (179)
Q Consensus 142 --~~~-n~~gl~~~~~~~~v~~~~~~~~~~r 169 (179)
..+ ..++.+++++..+-++.+...++.+
T Consensus 164 ~~~~iH~~~a~~l~~~i~~Hi~~a~~h~~~~ 194 (211)
T TIGR02125 164 NVRFIHHLGMWAFVIFVPVHVYMAVREDIRS 194 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112 4667777788888888888766643
No 39
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=83.46 E-value=20 Score=28.22 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhhc----cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhH
Q 030324 27 KSVHLCLQGLALACGIFGIWT-KFHG----IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPW 101 (179)
Q Consensus 27 k~iH~~Lq~la~~~~~iGl~~-~~~n----~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~ 101 (179)
-..|=.++.+++++ +-|-.+ .+++ ...+ +.-...|-++=.+++++.. .|+..-+... .....+.+.-+
T Consensus 12 Fn~HPlLm~~Gfi~-l~geAiL~yr~~~~~~~~k-~~~k~iH~~L~~~a~~~~i----~Gl~avf~~h-n~~~~~~fySl 84 (153)
T cd08765 12 FNWHPVLMVIGFIF-IQGIAIIVYRLPWTWKCSK-LLMKLIHAGLHILAFILAI----ISVVAVFVFH-NAKNIPNMYSL 84 (153)
T ss_pred eechHHHHHHHHHH-HHHHHHHHhcccccccccc-hhhHHHHHHHHHHHHHHHH----HHHHHHHHHc-cccCCCccccH
Confidence 35899999999888 555555 4442 1224 4457889888776665544 5665433322 22345667789
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 030324 102 HIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 102 H~~~G~~~f~la~~t~~lG~~ek 124 (179)
|-|+|+.++++-......|+..-
T Consensus 85 HSwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 85 HSWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999743
No 40
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=80.92 E-value=23 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhHHHhhccccccccch--hhhHHHHHHHHHHHHHHHHHHHh
Q 030324 69 ICVSLFGAQWMMGFLSFWHRAEVRMTRVR--VLPWHIFLGLYTYGLAVATAETG 120 (179)
Q Consensus 69 ~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~--~~~~H~~~G~~~f~la~~t~~lG 120 (179)
+....+..|.+.|+..+.-+. ....... ...+|..+|.+.+.+.+.-....
T Consensus 12 ~~a~~~i~l~~tG~~~~~~~~-~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 12 LNALSFIALIATGLWIHFPPP-GLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHhcccc-cccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355677788899996544322 2222222 36789999999999998887777
No 41
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=78.61 E-value=4.6 Score=31.66 Aligned_cols=86 Identities=17% Similarity=0.057 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh-hccCCCCCCccchhhHHHHHHHH--HHHHHHhhhhHHHhhccccccc--cchhhh
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKF-HGIDGVVANFYSLHSWMGLICVS--LFGAQWMMGFLSFWHRAEVRMT--RVRVLP 100 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~-~n~~~~~~h~~S~HswlGl~t~~--l~~lQ~~~G~~~fl~p~~~~~~--r~~~~~ 100 (179)
.+.+=|..|-+.-+....-+.... ...... |.+..- =..|++|+. +++.|+.+|+ -+.-.+.++.. |-.-+.
T Consensus 58 E~~~GW~~HY~iGi~fa~~~~~l~g~~wl~~-Pt~~~a-li~G~~tvl~p~~imqP~lG~-G~aas~tP~p~~~r~~sl~ 134 (150)
T PF11158_consen 58 ERILGWLAHYAIGIAFAVLYALLWGPGWLSR-PTLLPA-LIFGLVTVLAPFFIMQPALGA-GIAASKTPNPWKARLRSLI 134 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CchHHH-HHHHHHHHHHHHHHHHHHHhc-chhhccCCCchHHHHHHHH
Confidence 345556666554444444443322 122223 444332 246777766 8999999998 33333434333 333458
Q ss_pred HHHHHHHHHHHHHH
Q 030324 101 WHIFLGLYTYGLAV 114 (179)
Q Consensus 101 ~H~~~G~~~f~la~ 114 (179)
-|..+|...|+.+.
T Consensus 135 aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 135 AHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999998765
No 42
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=77.95 E-value=29 Score=28.12 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-hhhc---c-CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhh
Q 030324 26 KKSVHLCLQGLALACGIFGIWT-KFHG---I-DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLP 100 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~-~~~n---~-~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~ 100 (179)
....|-.+..+++++. -|-.+ .|+. . ..+ .-....|..+=.+++++-. .|+...+... .....+.+.-
T Consensus 34 ~Fn~HP~lMv~Gfi~L-~geAiL~Yr~~~~~~~~k-~~~K~~H~~L~~~Al~~~v----vGl~avf~~h-n~~~~~nlyS 106 (179)
T cd08762 34 NFNWHPVLMVTGMVVL-YGNAALVYRIPLTWGGPK-LPWKLLHAGLLLLAFILTV----IGLCAVFNFH-NVHHTANLYS 106 (179)
T ss_pred ceeehHHHHHHHHHHH-HHHHHHhhcccccccccc-hhHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCccchhh
Confidence 4568999999999876 44444 5542 1 122 2347889988887776644 4554433222 2223456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHH--HHHHHHHHHHHHHHh
Q 030324 101 WHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVV--NSLGLGLALLSGFVI 159 (179)
Q Consensus 101 ~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~--n~~gl~~~~~~~~v~ 159 (179)
+|-|+|+.+.++-...-..|+..- ++...+ ...++...- -..|+.+.+.+..-.
T Consensus 107 lHSWlGl~t~~Lf~lQ~~~Gf~~f-~~p~~~----~~~ra~~~p~H~~~G~~if~Laiat~ 162 (179)
T cd08762 107 LHSWVGICTVALFTCQWVMGFTSF-LLPWAP----MWLRALVKPIHVFFGAMILVLSIASC 162 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCc----hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999852 332221 112233322 466777655544433
No 43
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=76.81 E-value=12 Score=26.20 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh----hc------cC--CCCCCccchhhHHHHHHHHHHHHHHhhhhH
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKF----HG------ID--GVVANFYSLHSWMGLICVSLFGAQWMMGFL 83 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~----~n------~~--~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~ 83 (179)
.+.+=.+.-.+.+++.+.|++.-. ++ +. +. ...+.+|..+|+.+....++-.+.|..
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~-r~~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSK-RRWFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCcc-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777778888888998721 11 11 22 226779999999999999999999984
No 44
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=76.42 E-value=4.4 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhH
Q 030324 59 FYSLHSWMGLICVSLFGAQWMMGFL 83 (179)
Q Consensus 59 ~~S~HswlGl~t~~l~~lQ~~~G~~ 83 (179)
|+.+|.|++.++...+.+-.+.|+.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877777763
No 45
>PLN02351 cytochromes b561 family protein
Probab=75.01 E-value=51 Score=27.96 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHH
Q 030324 28 SVHLCLQGLALACGIFGIWTKFHGI-DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLG 106 (179)
Q Consensus 28 ~iH~~Lq~la~~~~~iGl~~~~~n~-~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G 106 (179)
..|-.+..+++++...=-...|+.- ... +-....|-++=.+++++- +.|+.. -+.. ..+..+-+.-+|-|+|
T Consensus 52 n~HP~lMviGfi~L~geAILvYR~~~~~~-k~~K~lH~~Lh~~Ali~~----vvGl~a-~fh~-~~~~i~nlySLHSWlG 124 (242)
T PLN02351 52 VLHPLLMVIGFILISGEAILVHRWLPGSR-KTKKSVHLWLQGLALASG----VFGIWT-KFHG-QDGIVANFYSLHSWMG 124 (242)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHHHH----HHHHHH-HHhc-ccCCccchhHHHHHHH
Confidence 4899999999887544333344431 112 225788888766666554 556655 1111 1112355778999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHH--HHHHHHHHHHHHH
Q 030324 107 LYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVV--NSLGLGLALLSGF 157 (179)
Q Consensus 107 ~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~--n~~gl~~~~~~~~ 157 (179)
+.+.++-...-..|+..- ++...+ ...++...- ...|+.+.+.+..
T Consensus 125 l~tv~Lf~lQwv~Gf~~F-~~P~~~----~~~Ra~~~P~Hv~~Gl~if~Laia 172 (242)
T PLN02351 125 LICVSLFGAQWLTGFMSF-WHRGEM----RTTRTTVLPWHVFLGLYTYGLAVA 172 (242)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCc----hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999852 343221 112233332 4566666544433
No 46
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=75.00 E-value=4.3 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.6
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhH
Q 030324 58 NFYSLHSWMGLICVSLFGAQWMMGFL 83 (179)
Q Consensus 58 h~~S~HswlGl~t~~l~~lQ~~~G~~ 83 (179)
-+..+|-|+|+.+....++..+.|..
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999984
No 47
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=72.86 E-value=12 Score=30.39 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccc--cccccchhhhH
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGIDG--VVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE--VRMTRVRVLPW 101 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~~~--~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~--~~~~r~~~~~~ 101 (179)
...+||..-.+-+.....|.....-.+.+ + -.++.+|=.+|+.+..|.++-.+..+ ..|.- .++..+--...
T Consensus 12 ~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~-~~~~~~Hks~Gi~vl~L~v~Rl~wrl---~~~~p~~~~~~~~~~~~a 87 (181)
T COG3038 12 QIALHWLMALLVIGAFALGELMGFLPRGPGLY-FLLYELHKSIGILVLALMVLRLLWRL---RNPAPPIVPGPPPWQRKA 87 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCCCCCCCChHHHHH
Confidence 45799988888888888887775443332 3 47899999999999999998888777 33331 11111222244
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 030324 102 HIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 102 H~~~G~~~f~la~~t~~lG~~ek 124 (179)
=+..=.+.|++-++--++|+--.
T Consensus 88 A~~~Hl~LY~l~lalPlsG~l~~ 110 (181)
T COG3038 88 AKLGHLALYLLMLALPLSGYLLS 110 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678888888889998744
No 48
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=70.70 E-value=51 Score=26.67 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 70 CVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 70 t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
+..++..|+..|...-..|+ ....|.....+|.-+|+.+..+.+.=++..+.+.
T Consensus 19 ~allv~~~~~~g~~~~~~~~-~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~ 72 (181)
T COG3038 19 MALLVIGAFALGELMGFLPR-GPGLYFLLYELHKSIGILVLALMVLRLLWRLRNP 72 (181)
T ss_pred HHHHHHHHHHHHHHHHHccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44466677777887766766 3345667788999999999999999988888765
No 49
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=68.27 E-value=61 Score=26.01 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHH
Q 030324 32 CLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYG 111 (179)
Q Consensus 32 ~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~ 111 (179)
+.+....+....|-....- + ......|-.+|...++++.+-.+.|...-+... .+.+.--|-+.|.....
T Consensus 57 ~~~~~~~~~~~~~~~~~l~----~-~~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~-----~~lf~spH~~~Gl~~~~ 126 (175)
T PF13301_consen 57 IARAIFLILALTGTRKELV----K-LKARDRHYRLGFALLAFMGLGALGGQLGTYRQN-----GKLFWSPHLWAGLAVVG 126 (175)
T ss_pred hhHHHHHHHHHHHHHHHHH----h-hhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC-----CCCccCchHHHHHHHHH
Confidence 3344444444444444322 1 235778999999999999999999986655433 22333459999999999
Q ss_pred HHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHH
Q 030324 112 LAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALL 154 (179)
Q Consensus 112 la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~ 154 (179)
+-.++..+.-. .+.+++ .+..+-.+..|++.+++.+.
T Consensus 127 L~~~s~al~~~---i~~g~~---~~~R~lHi~lN~~~l~Lf~~ 163 (175)
T PF13301_consen 127 LMAFSAALVPQ---IQKGNR---PWARRLHIYLNSLALLLFAW 163 (175)
T ss_pred HHHHHHHHHHH---HccCCc---hhHHHHHHHHHHHHHHHHHH
Confidence 88888776643 233221 12233445568766665443
No 50
>PLN02810 carbon-monoxide oxygenase
Probab=67.05 E-value=77 Score=26.72 Aligned_cols=123 Identities=13% Similarity=-0.006 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHH
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGI-DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIF 104 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~-~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~ 104 (179)
.-..|=.+..+++++.-.=-...|+.- ..+ +.-...|..+=.+++++-. .|+..-+... .....+-+.-+|-|
T Consensus 46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k-~~~K~iH~~lh~~Al~l~v----vGl~Avf~~H-n~~~i~nlySLHSW 119 (231)
T PLN02810 46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK-EVKKLIHLVLHAIALILGI----FGICAAFKNH-NESGIANLYSLHSW 119 (231)
T ss_pred eeeehHHHHHHHHHHHhhHHHHHhhcccccc-chHHHHHHHHHHHHHHHHH----HHHHHHHHhc-cccCCCceeeHHHH
Confidence 346888888888776554444455532 123 3457888887776665543 4554433222 22234557789999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHH--HHHHHHHHHHHHHHh
Q 030324 105 LGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVV--NSLGLGLALLSGFVI 159 (179)
Q Consensus 105 ~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~--n~~gl~~~~~~~~v~ 159 (179)
+|+.+..+-...-..|+..- +|...+ ...+++.+- -..|+.+.+.+....
T Consensus 120 lGl~tv~Lf~lQw~~Gf~~F-l~P~~~----~~~R~~~lP~Hv~~Gl~if~LAiata 171 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFIVF-FFPGGS----TNLRSGSLPWHVLFGLFVYILAVGNA 171 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCc----hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998632 232221 112333333 466777655544443
No 51
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=61.33 E-value=37 Score=22.13 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhcccc----ccccchhhhHHHHHHHHHHHHHHH
Q 030324 66 MGLICVSLFGAQWMMGFLSFWHRAEV----RMTRVRVLPWHIFLGLYTYGLAVA 115 (179)
Q Consensus 66 lGl~t~~l~~lQ~~~G~~~fl~p~~~----~~~r~~~~~~H~~~G~~~f~la~~ 115 (179)
+=+..+..++...+.|+..+..|... ...|......|.+.|...+++...
T Consensus 5 i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 5 INLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667778888999887765432 122566779999999988887654
No 52
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=59.10 E-value=1e+02 Score=25.51 Aligned_cols=149 Identities=12% Similarity=0.013 Sum_probs=75.2
Q ss_pred hhhccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccc---
Q 030324 14 LVHRWLPGSRNLKKSVHLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE--- 90 (179)
Q Consensus 14 L~~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~--- 90 (179)
+..|.....|......|-.+..++.+.+.+.+....+.+ . ..+|..+..+.++-...+. +..|..
T Consensus 13 l~~r~~~~g~~p~~n~~e~~~~~aw~~~~~~l~~~~~~~--~--------~~l~~~~~p~~~~~~~~~~--~~~p~~~~~ 80 (243)
T TIGR03144 13 LVLRWIESGHFPLSNLYESLLFLSWSLSLIYLILERKYK--L--------RVLGAFVAPLALLILGFAS--LVLPVEMQQ 80 (243)
T ss_pred HHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHh--h--------hHHHHHHHHHHHHHHHHHH--Hcccccccc
Confidence 555554334444556788888888888888887754422 1 1355555444333222222 222432
Q ss_pred ----cccccchhhhHHHHHHHHHHHHHHHHHHHhhh----HHHHhhhccc--------CccCCCCchHHH------HHHH
Q 030324 91 ----VRMTRVRVLPWHIFLGLYTYGLAVATAETGLL----EKLTFLQTRR--------NVYKSCPESMVV------NSLG 148 (179)
Q Consensus 91 ----~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~----ek~~f~~~~~--------~~~~~~~~~~~~------n~~g 148 (179)
++..++..+..|..+-...|..-.++...|+. |+ -.++++ .+++.|+-..+- ...|
T Consensus 81 ~~~l~p~l~s~wl~iHv~~a~l~ya~~~la~~~a~lyL~~~~--~lk~k~~~~~~~~~~~~~lp~L~~ld~l~~~~~~~G 158 (243)
T TIGR03144 81 STPLVPALQSNWLMMHVSVMILSYAALLVGSLLSIAYLLKTR--KQNLEYRTSRFLGANSRRLPLLETLDNLSYRTIAIG 158 (243)
T ss_pred ccccchHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcchhcccchhhhhhcCccHHHHHHHHHHHHHHH
Confidence 22234556789987766666655555554443 21 111100 123345433221 3456
Q ss_pred HHHHHHHHHHhhhhccCCCCCC-CCCCCC
Q 030324 149 LGLALLSGFVIFAAVSPKSHVP-VNKPKC 176 (179)
Q Consensus 149 l~~~~~~~~v~~~~~~~~~~r~-~~~~~~ 176 (179)
..+...+.+.-..-.++.+.|. .-||+-
T Consensus 159 f~~ltl~li~G~iWa~~~wg~~w~wDpK~ 187 (243)
T TIGR03144 159 FPLLTIGIISGAVWANEAWGSYWSWDPKE 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHH
Confidence 6655555444444444556665 567763
No 53
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=55.87 E-value=1.1e+02 Score=24.89 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=42.7
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhHHHhh--ccccc----------ccc--chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 58 NFYSLHSWMGLICVSLFGAQWMMGFLSFWH--RAEVR----------MTR--VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 58 h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~--p~~~~----------~~r--~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
|...+. .+|-++...+.+|.+.|++.-++ |+... +.+ -.++..|++..-..+++...=..-|+.
T Consensus 18 ~~~~~~-~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~ 95 (200)
T cd00284 18 NISYWW-NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95 (200)
T ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332 57999999999999999977554 44211 111 224478998888888777776666664
No 54
>PRK10263 DNA translocase FtsK; Provisional
Probab=55.52 E-value=71 Score=33.47 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhhc--cCCCCCC---ccchhhHHHHHHHHH-HHHHHhhhhHHHhhcc
Q 030324 29 VHLCLQGLALACGIFGIWT----KFHG--IDGVVAN---FYSLHSWMGLICVSL-FGAQWMMGFLSFWHRA 89 (179)
Q Consensus 29 iH~~Lq~la~~~~~iGl~~----~~~n--~~~~~~h---~~S~HswlGl~t~~l-~~lQ~~~G~~~fl~p~ 89 (179)
-|...++.+++|.++++.. .+++ +.+. .+ -...|.|+|.+.-.+ -++-.++|+.+|++|-
T Consensus 19 ~rrL~E~~gIlLlllAlfL~lALiSYsPsDPSw-S~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 19 GRRLLEALLILIVLFAVWLMAALLSFNPSDPSW-SQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCccCCcc-cccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456677777777777665 3333 2222 21 122577888765542 1222378888887764
No 55
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=54.47 E-value=59 Score=27.63 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=40.7
Q ss_pred hHHHHH--HHHHHHHHHHHHHHhhhHHH--HhhhcccCccCCCCchHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 030324 100 PWHIFL--GLYTYGLAVATAETGLLEKL--TFLQTRRNVYKSCPESMVVNSLGLGLALLSGFVIFAAVSPKSHVP 170 (179)
Q Consensus 100 ~~H~~~--G~~~f~la~~t~~lG~~ek~--~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~v~~~~~~~~~~r~ 170 (179)
|+=+.. |+...+=+.+++++|...-. +|..+ .-.+.....|.+|+.+.+.+.. ++..++|+-+++
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~-----~~~~~~~~Ln~~G~~l~~~~~~-~f~fik~~~~~~ 142 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLD-----PQVPSSPWLNYIGVALVLVSGI-IFSFIKSEEKEP 142 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccc-----ccccchhHHHHHHHHHHHHHHH-heeeecCCCCCc
Confidence 444444 44455567778999987552 34322 1133456789999999888766 566777766443
No 56
>PLN02631 ferric-chelate reductase
Probab=53.89 E-value=47 Score=32.37 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Q 030324 96 VRVLPWHIFLGLYTYGLAVATAET 119 (179)
Q Consensus 96 ~~~~~~H~~~G~~~f~la~~t~~l 119 (179)
.....+|||.|+.+++++++=...
T Consensus 186 e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999988775443
No 57
>CHL00070 petB cytochrome b6
Probab=53.22 E-value=1.2e+02 Score=25.23 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHhh--ccccc----------ccc--chhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 030324 63 HSWMGLICVSLFGAQWMMGFLSFWH--RAEVR----------MTR--VRVLPWHIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 63 HswlGl~t~~l~~lQ~~~G~~~fl~--p~~~~----------~~r--~~~~~~H~~~G~~~f~la~~t~~lG~~e 123 (179)
==++|-++..++.+|.+.|++..++ |.... +.+ -.++..|++..-..+++..+=..-|+..
T Consensus 33 ~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~ 107 (215)
T CHL00070 33 FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLT 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999976554 43221 111 1234789999888888888888777653
No 58
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=52.75 E-value=73 Score=24.19 Aligned_cols=90 Identities=11% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc-ccCccCCC---Cc
Q 030324 65 WMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQT-RRNVYKSC---PE 140 (179)
Q Consensus 65 wlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~-~~~~~~~~---~~ 140 (179)
..|++..+++++....|.-. .-.+.+.++|...+++..+....++.+. .++ .+++-.+. ..
T Consensus 5 i~G~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~i~~~---R~~~~~g~isf~~a~~~ 69 (163)
T PF13858_consen 5 IFGLILILFFLLSYLLGMHD------------IKYPSNSWLGILSMVITIIFIYFAIRRY---RKKYNGGFISFGQAFKV 69 (163)
T ss_pred HHHHHHHHHHHHHHHHHHcc------------ccccHhHHHHHHHHHHHHHHHHHHHHHH---HHHccCCCeeHHHHHHH
Confidence 56777777777777776621 2335566778777888888888887743 322 11221221 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 030324 141 SMVVNSLGLGLALLSGFVIFAAVSPKSHV 169 (179)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~~r 169 (179)
+.+..+.+-++......+.+..+.|++..
T Consensus 70 g~~~~~ia~li~~v~~~i~~~~IdP~~~~ 98 (163)
T PF13858_consen 70 GFLISLIAGLISAVFQYIYFNYIDPDFFE 98 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 23333333333333444456666776543
No 59
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=51.58 E-value=1.2e+02 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=16.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 94 TRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 94 ~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
.++....+|..+-...|....++...|.
T Consensus 67 l~~~~l~iHv~~~~~~ya~~~ia~~~al 94 (214)
T PF01578_consen 67 LQSPWLYIHVPLALLGYAAFAIAALAAL 94 (214)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3555667787766665555554444443
No 60
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=50.82 E-value=33 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=22.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 95 RVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 95 r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
|.+.-..||..|++-....+.++..|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455578999999988888888888875
No 61
>PLN02292 ferric-chelate reductase
Probab=50.73 E-value=61 Score=31.60 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 030324 96 VRVLPWHIFLGLYTYGLAVATA 117 (179)
Q Consensus 96 ~~~~~~H~~~G~~~f~la~~t~ 117 (179)
.....+|||.|+.+++++++=.
T Consensus 203 e~f~~yHRWlGrii~ll~~lH~ 224 (702)
T PLN02292 203 ESSIKYHIWLGHLVMTLFTSHG 224 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999887643
No 62
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=48.73 E-value=1.7e+02 Score=24.90 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhc-c-CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHH
Q 030324 28 SVHLCLQGLALACGIFGIWT-KFHG-I-DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIF 104 (179)
Q Consensus 28 ~iH~~Lq~la~~~~~iGl~~-~~~n-~-~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~ 104 (179)
-.|-.++.++++.. -|-.+ .|+- . ..+ +--...|.++=++++++-.. |+.+.+..- .....+.+.-.|-|
T Consensus 56 nlHP~lMviGfI~l-~GeAiL~YR~~r~~~k-~~~KliH~~LH~~Alvl~i~----gl~avf~~h-n~~~i~NfySLHSW 128 (245)
T KOG1619|consen 56 NLHPVLMVIGFIYL-QGEAILIYRVFRYTSK-KVSKLIHLGLHIIALVLAII----GLCAVFDSH-NLVGIANFYSLHSW 128 (245)
T ss_pred CcchHHHHHHHHHh-ccceeeeeehhhhhhH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHh-hhcCccceeeHHHH
Confidence 48999998888764 34444 3332 1 122 34578899999988887654 444433211 11113456689999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcccCc
Q 030324 105 LGLYTYGLAVATAETGLLEKLTFLQTRRNV 134 (179)
Q Consensus 105 ~G~~~f~la~~t~~lG~~ek~~f~~~~~~~ 134 (179)
.|+.++++=.+.-..|+.+- +|...+.++
T Consensus 129 lGl~~v~ly~~Q~v~GF~tf-l~pg~~~~~ 157 (245)
T KOG1619|consen 129 LGLCVVILYSLQWVFGFFTF-LFPGSPESY 157 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCccH
Confidence 99999999999999999865 555554444
No 63
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=47.27 E-value=1.1e+02 Score=22.31 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=55.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHH-HHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhh
Q 030324 21 GSRNLKKSVHLCLQGLALACGI-FGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVL 99 (179)
Q Consensus 21 ~~~~~~k~iH~~Lq~la~~~~~-iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~ 99 (179)
++++..-..|..++.++++... +|+....-+ .+||--.=.+...+...-+..|.. +-+ ..+.+.
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~--------sr~~~~~q~~~~~l~~~g~~~g~~---~~~----~~p~ly 76 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNAR--------SRWHLPVQTVFLVLMILGLFLGSV---YNG----STPDLY 76 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHHHHHHHH---Hhc----CCCCCC
Confidence 3566777899999999987654 455542111 234554444444444444444441 111 112222
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 100 --PWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 100 --~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
-.|..+|.+++++.++....|+..|
T Consensus 77 p~n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 77 PNNAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998755
No 64
>COG3658 Cytochrome b [Energy production and conversion]
Probab=46.47 E-value=93 Score=25.18 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhhHHH-------hhccccc---------cccchhhhHHHHHHHHHH----HHHHHHHHHh
Q 030324 61 SLHSWMGLICVSLFGAQWMMGFLSF-------WHRAEVR---------MTRVRVLPWHIFLGLYTY----GLAVATAETG 120 (179)
Q Consensus 61 S~HswlGl~t~~l~~lQ~~~G~~~f-------l~p~~~~---------~~r~~~~~~H~~~G~~~f----~la~~t~~lG 120 (179)
.+|-|+|..++.+..+-...|.... +-|+-++ .-|....+-|+=.|.+.. .+..++..+|
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~TG 114 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGTG 114 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999998542 2232110 113445577888886543 3444555556
Q ss_pred hhHHH--HhhhcccCccCCC----Cc-------hHHHHHHHHHHHHHHHHHhhhh
Q 030324 121 LLEKL--TFLQTRRNVYKSC----PE-------SMVVNSLGLGLALLSGFVIFAA 162 (179)
Q Consensus 121 ~~ek~--~f~~~~~~~~~~~----~~-------~~~~n~~gl~~~~~~~~v~~~~ 162 (179)
....+ +|.++ .|.+.. .| ..++|.+.+++++=.+.|+...
T Consensus 115 ~lar~d~~~ged--~~~~~~~~~h~~~~~~evHet~~nll~vliaiHiAav~~~s 167 (192)
T COG3658 115 WLARDDNFWGED--WYLNHLVSEHTGSLMREVHETLANLLAVLIAIHIAAVAAMS 167 (192)
T ss_pred hhhhhhhhhccc--hhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 12211 111000 11 2456888888877665555433
No 65
>COG2245 Predicted membrane protein [Function unknown]
Probab=46.31 E-value=1.6e+02 Score=23.89 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=16.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Q 030324 96 VRVLPWHIFLGLYTYGLAVATAET 119 (179)
Q Consensus 96 ~~~~~~H~~~G~~~f~la~~t~~l 119 (179)
+-..|-|.+++...+..+.+..+.
T Consensus 88 ~~~~~~~~~~~l~~~Lag~Vi~wI 111 (182)
T COG2245 88 TFMLPAHGLSALGSFLAGFVILWI 111 (182)
T ss_pred cccCchhHHHHHHHHHHHHHHHHH
Confidence 345578888887777766655544
No 66
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=46.15 E-value=47 Score=25.13 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccc
Q 030324 22 SRNLKKSVHLCLQGLALACGIFGIWTKFHG--IDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE 90 (179)
Q Consensus 22 ~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~ 90 (179)
+++..+.+|++.+.+..++.+++++..+-- ++..+-|+ .+ ++++.+.......+.+|+...
T Consensus 23 ~~~r~riinliiG~vT~l~VLvtii~afvf~~~~p~p~~i-----ff---avcI~l~~~s~~lLI~WYR~g 85 (118)
T PF10856_consen 23 TSARDRIINLIIGAVTSLFVLVTIISAFVFPQDPPKPLHI-----FF---AVCILLICISAILLIFWYRQG 85 (118)
T ss_pred CCcccEEEEeehHHHHHHHHHHHHhheEEecCCCCCceEE-----eh---HHHHHHHHHHHHhheeehhcC
Confidence 444555899999999999999999874432 22220133 33 344444455666777777553
No 67
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=44.62 E-value=2.2e+02 Score=25.12 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh---hccCCCCCC-ccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhh-h
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKF---HGIDGVVAN-FYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVL-P 100 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~---~n~~~~~~h-~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~-~ 100 (179)
.+..-..|-.++.+|+++|..-.+ .+.+.- |+ +.-=|=-.|+..++-.+...+.-. .++.|-.+- +
T Consensus 150 s~~~~~~Liav~~~~~li~~iw~~~Ll~~~~~~-p~y~VAGhVm~Gla~iCtsLIaLVAtI--------~RQirN~ys~~ 220 (347)
T PF10951_consen 150 SRGQGNILIAVPILCALIGWIWAIVLLSSSDEH-PAYFVAGHVMFGLACICTSLIALVATI--------ARQIRNTYSEK 220 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccceehhHHHhhHHHHHHHHHHHHHHH--------HHHHhccccHH
Confidence 355667888889999999987633 222223 44 788899999988887666555544 222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 030324 101 WHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 101 ~H~~~G~~~f~la~~t~~lG~~ 122 (179)
=|++.=....+++.++...|+.
T Consensus 221 Er~~W~~lVl~mGsi~~l~Gl~ 242 (347)
T PF10951_consen 221 ERWKWPKLVLVMGSISILWGLY 242 (347)
T ss_pred HhhhhHHHHHHHhhHHHHhhhh
Confidence 3333344567778888888875
No 68
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.74 E-value=61 Score=26.08 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhH
Q 030324 30 HLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSW 65 (179)
Q Consensus 30 H~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~Hsw 65 (179)
|.++..+..++++.+++-+.+++..+ ..+.+-|.|
T Consensus 76 ~iilglivvvlvi~~liwa~~~~a~~-krmr~~hp~ 110 (188)
T KOG4050|consen 76 DIILGLIVVVLVIGTLIWAASADANI-KRMRTDHPL 110 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHH-HHHhhcCcH
Confidence 34444444444444344344433333 334444444
No 69
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=43.66 E-value=43 Score=27.59 Aligned_cols=57 Identities=19% Similarity=0.097 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchHHHHHHHHHHHHHHHHHhhhhccCCC
Q 030324 105 LGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESMVVNSLGLGLALLSGFVIFAAVSPKS 167 (179)
Q Consensus 105 ~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (179)
.|+.+.+.-......-.-|+..|.-- +|.|.| +++|++-++.+++|.+-. .|-||+|
T Consensus 5 s~R~~l~~ic~~qli~~leRqVFDFL--GyqWaP---Il~NF~hIi~vIlGlFG~-~QyR~ry 61 (200)
T PF05640_consen 5 SGRCTLIFICALQLITALERQVFDFL--GYQWAP---ILANFLHIIFVILGLFGA-IQYRPRY 61 (200)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH---HHHHHHHHHHHHHHHhhh-eeecchH
Confidence 35556665556666666677777655 366655 677888887777766532 3444544
No 70
>PRK11513 cytochrome b561; Provisional
Probab=40.44 E-value=62 Score=25.57 Aligned_cols=50 Identities=14% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 70 CVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 70 t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
+..++..|+..|...-..|+ ..+..+..+|..+|+.++.+.+.=....+.
T Consensus 16 ~a~li~~~~~~~~~~~~~~~---~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~ 65 (176)
T PRK11513 16 VFLLVIVAYCAMEFRGFFPR---SDRPLINMIHVSCGISILVLMVVRLLLRLK 65 (176)
T ss_pred HHHHHHHHHHHHHHHcccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666653322332 234456689999999999999988888775
No 71
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=40.08 E-value=3.3e+02 Score=25.75 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=47.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh-hhhccCCCCCCccchhhHHHHHHHHHHHH-HHhhhhHHHhhccccccccchhh
Q 030324 22 SRNLKKSVHLCLQGLALACGIFGIWT-KFHGIDGVVANFYSLHSWMGLICVSLFGA-QWMMGFLSFWHRAEVRMTRVRVL 99 (179)
Q Consensus 22 ~~~~~k~iH~~Lq~la~~~~~iGl~~-~~~n~~~~~~h~~S~HswlGl~t~~l~~l-Q~~~G~~~fl~p~~~~~~r~~~~ 99 (179)
.|.....-+++.-.+++.++=-.+.- .|.|.+.+ .. +.+...=.+.+ +..+ +.+..++.........-.||++.
T Consensus 228 ~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~t-G~--~~~~~~~~a~i-~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg 303 (518)
T KOG2568|consen 228 WHDILPLQKYITAVIALGMAETAVFYSEYANFNST-GM--SPKVYTVFASI-LSAIKKTLSRLLLLIVSLGYGIVKPTLG 303 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CC--CchhHHHHHHH-HHHHHHHHHHHHHHHHhcCcceEecCcc
Confidence 33444344455555555544444443 44444433 22 33333322222 2222 23334433333333344577766
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 100 -PWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 100 -~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
..||-.++.+.. -+++++.|+.+.
T Consensus 304 ~~l~rv~~ig~~~-~i~s~i~~l~~~ 328 (518)
T KOG2568|consen 304 GTLLRVCQIGVIY-FIASEILGLARV 328 (518)
T ss_pred hHHHHHHHHhHHH-HHHHHHHHHHHH
Confidence 788888765543 456777888766
No 72
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=38.23 E-value=1.5e+02 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 030324 97 RVLPWHIFLGLYTYGLAVATAET 119 (179)
Q Consensus 97 ~~~~~H~~~G~~~f~la~~t~~l 119 (179)
...++|||.|+.+++++++=...
T Consensus 190 ~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 190 ASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46699999999999999876653
No 73
>PRK03735 cytochrome b6; Provisional
Probab=37.52 E-value=2e+02 Score=23.96 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHhh--ccccccc-------c-----chhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 62 LHSWMGLICVSLFGAQWMMGFLSFWH--RAEVRMT-------R-----VRVLPWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 62 ~HswlGl~t~~l~~lQ~~~G~~~fl~--p~~~~~~-------r-----~~~~~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
+==++|-++..++.+|.+.|++..++ |...... | -.++..|++..-..+++...=..-|+...
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~g 116 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTG 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44577999999999999999977554 4321111 1 12347899998888888888888777643
No 74
>PRK13673 hypothetical protein; Provisional
Probab=37.27 E-value=1.2e+02 Score=22.86 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=51.1
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhcccccccc
Q 030324 16 HRWLPGSRNLKKSVHLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTR 95 (179)
Q Consensus 16 ~r~~~~~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r 95 (179)
|...+++++..|.+|.++-..=++..+.|+..-...-.+. +-+|..=..+|+.++.+. =-..-+ |
T Consensus 20 y~l~s~~~~~~ki~hMilRLfyil~iiTG~~l~~~~~~~~-~~l~~~K~l~gi~vIg~m---------Em~l~r-----~ 84 (118)
T PRK13673 20 YSLYSGGSKKAKILHMILRLFYILIIITGFWLLIRSFGSN-HMLYILKMLLGIIVIGLM---------EMSLAK-----R 84 (118)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHH---------HHHHHH-----H
Confidence 3333343444568999999999999999988833221222 335666777777544332 111112 1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 96 VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 96 ~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
++-.+.|.+++....+ .+.+..+|+.
T Consensus 85 kk~k~~~~~~~~~ii~-lvlti~lG~~ 110 (118)
T PRK13673 85 KKGKPTGGFWWIFIIV-LVLTILLGLI 110 (118)
T ss_pred HcCCCcccHHHHHHHH-HHHHHHHHHH
Confidence 1123455565555544 3666677864
No 75
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=35.95 E-value=59 Score=24.59 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcc
Q 030324 61 SLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTR 131 (179)
Q Consensus 61 S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~ 131 (179)
=.|=.+|..|..+.+...+.++ .+|.. .-.|.|.+++..+.+..+.++++=+ |+.+.+
T Consensus 29 iinliiG~vT~l~VLvtii~af---vf~~~------~p~p~~iffavcI~l~~~s~~lLI~----WYR~gd 86 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAF---VFPQD------PPKPLHIFFAVCILLICISAILLIF----WYRQGD 86 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheE---EecCC------CCCceEEehHHHHHHHHHHHHhhee----ehhcCC
Confidence 4567899999998888777776 45543 2346899999988888777777654 576553
No 76
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=35.87 E-value=2.5e+02 Score=25.10 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhh-hhhcc---CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHH
Q 030324 33 LQGLALACGIFGIWT-KFHGI---DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLY 108 (179)
Q Consensus 33 Lq~la~~~~~iGl~~-~~~n~---~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~ 108 (179)
.|..|+++..+|... ...+. +.. .....--+|+|+.++...+ +..|++..++.+.-++.+.....--..+...
T Consensus 147 ~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~-~~~~~~n~~~G~~avl~~c--~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~ 223 (345)
T KOG2234|consen 147 LQWMALVLLFAGVALVQLPSLSPTGAK-SESSAQNPFLGLVAVLVAC--FLSGFAGVYFEKILKGSNVSLWIRNIQLYFF 223 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcc-CCCcccchhhhHHHHHHHH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 568888999999888 32221 111 1234456899998877655 6788877777776555554444334444444
Q ss_pred HHHHHHHHHH
Q 030324 109 TYGLAVATAE 118 (179)
Q Consensus 109 ~f~la~~t~~ 118 (179)
..+.+..+++
T Consensus 224 g~~f~~l~~~ 233 (345)
T KOG2234|consen 224 GILFNLLTIL 233 (345)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 77
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=34.76 E-value=1.7e+02 Score=20.76 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=31.1
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHh
Q 030324 58 NFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETG 120 (179)
Q Consensus 58 h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG 120 (179)
+--..|.++|+.+..++..-... ..+.... +.+ ...+.=..+..+...+...+..+|
T Consensus 38 ~~~~~H~~~~~~~~~l~~~l~~w---~~~~r~~--~~~-~~~~~~l~ls~~~~~ll~~~g~lG 94 (104)
T PF09990_consen 38 RVAWLHAILGLVALGLFLLLAIW---RWLWRRR--DPR-AVSPFGLALSLLGVVLLLVTGWLG 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhC--CCc-cccHHHHHHHHHHHHHHHHHHHhH
Confidence 45778999999888887762222 2222111 111 233444455555556666666665
No 78
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=34.13 E-value=1.5e+02 Score=21.86 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccchhhHHHHHHHHH
Q 030324 22 SRNLKKSVHLCLQGLALACGIFGIWTKFHGIDGVVANFYSLHSWMGLICVSL 73 (179)
Q Consensus 22 ~~~~~k~iH~~Lq~la~~~~~iGl~~~~~n~~~~~~h~~S~HswlGl~t~~l 73 (179)
+.+..|..|.++-.+=++..+.|+..-.++..+. |=++..=..+|+.++.+
T Consensus 28 ~~k~~k~~~MilRl~YlliiisG~~L~~~~~~~~-~~l~~iK~l~gl~vI~l 78 (110)
T PF07457_consen 28 KTKKAKILHMILRLFYLLIIISGVWLFIRTFAGN-PMLYIIKMLLGLIVIGL 78 (110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 3456678999999988888888888855543334 55677777777755543
No 79
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=33.07 E-value=2.6e+02 Score=22.53 Aligned_cols=64 Identities=8% Similarity=-0.052 Sum_probs=40.5
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhHHHhhccc----cccccchhhhHHHHHHHHHHHHHHHHHHHhhhH
Q 030324 59 FYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE----VRMTRVRVLPWHIFLGLYTYGLAVATAETGLLE 123 (179)
Q Consensus 59 ~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~----~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~e 123 (179)
++...-..-........++.+.|++.. +|.. +.........+|........+..++=+..++.+
T Consensus 107 yN~~qk~~y~~~~~~~~~~~iTGl~l~-~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~~ 174 (211)
T PRK10639 107 YNFGQKCVFWAAIIFLVLLLVSGVIIW-RPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWV 174 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555666678899999643 4422 112233456899999888888777766666543
No 80
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=32.67 E-value=85 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCC
Q 030324 142 MVVNSLGLGLALLSGFVIFAAVSPKSH 168 (179)
Q Consensus 142 ~~~n~~gl~~~~~~~~v~~~~~~~~~~ 168 (179)
.++|++|+.. +..+|+|..+..+.+
T Consensus 9 ~lan~lG~~~--~~LIVlYH~v~~n~~ 33 (35)
T PF10215_consen 9 TLANFLGVAA--MVLIVLYHFVEVNAK 33 (35)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHCCH-T
T ss_pred HHHHHHHHHH--HHHHHHHHHhhcccC
Confidence 5778888775 556666665554433
No 81
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=30.20 E-value=3.3e+02 Score=24.02 Aligned_cols=6 Identities=0% Similarity=-0.319 Sum_probs=2.5
Q ss_pred cCCCCC
Q 030324 164 SPKSHV 169 (179)
Q Consensus 164 ~~~~~r 169 (179)
+.+++|
T Consensus 431 ~~~~~~ 436 (442)
T TIGR00908 431 RHHLVS 436 (442)
T ss_pred hchhhc
Confidence 334444
No 82
>PF14927 Neurensin: Neurensin
Probab=29.34 E-value=2.3e+02 Score=21.96 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 98 VLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 98 ~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..++=-.+|+...++++++..+|+.
T Consensus 43 ~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 43 CWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677899999999999999986
No 83
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=28.91 E-value=1.9e+02 Score=20.34 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=38.5
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhHHHhhccc---cccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 57 ANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE---VRMTRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 57 ~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~---~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
++....|-|+|..++++..+..+.=......... ...........=...|...+++-+.-..+..
T Consensus 31 ~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~ 98 (125)
T PF01794_consen 31 DRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSF 98 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566699999999999988885544432221110 1112223334455678777776666666554
No 84
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.69 E-value=2e+02 Score=19.75 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 030324 107 LYTYGLAVATAETGLLEK 124 (179)
Q Consensus 107 ~~~f~la~~t~~lG~~ek 124 (179)
..+.+.++++...|+...
T Consensus 15 ~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556777778887644
No 85
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=27.91 E-value=2.8e+02 Score=21.18 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhh--hhhccCCC--------CCCcc----chhhHHHHHHHHHHHHHHhhhhHHHhhc
Q 030324 23 RNLKKSVHLCLQGLALACGIFGIWT--KFHGIDGV--------VANFY----SLHSWMGLICVSLFGAQWMMGFLSFWHR 88 (179)
Q Consensus 23 ~~~~k~iH~~Lq~la~~~~~iGl~~--~~~n~~~~--------~~h~~----S~HswlGl~t~~l~~lQ~~~G~~~fl~p 88 (179)
|+.+...|--.|..|+.++.+=+.. ..+--.|. .+..| -.|..+-.+++.+.......|+-.
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~---- 102 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG---- 102 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 3445568999999998888776666 22221111 01111 236666555555555555555511
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 89 AEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 89 ~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
-..-||-.|+.++..=..+..+|.-
T Consensus 103 ---------~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 103 ---------RFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357999999999999999998875
No 86
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.70 E-value=2.8e+02 Score=20.78 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 75 GAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 75 ~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
+-..++|++....-...+..++....+..+.|+..|.+-+.+...+.
T Consensus 38 ~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 38 VYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 33346666555543322235666678889999999988887777775
No 87
>COG4244 Predicted membrane protein [Function unknown]
Probab=26.43 E-value=2.2e+02 Score=22.71 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=62.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhh----hccC--CCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccch
Q 030324 24 NLKKSVHLCLQGLALACGIFGIWTKF----HGID--GVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVR 97 (179)
Q Consensus 24 ~~~k~iH~~Lq~la~~~~~iGl~~~~----~n~~--~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~ 97 (179)
..+...=|..-..|.+.+.+...+.. ..+. .. ..=.-||+.+|.++.+.+. +.|++-+++ +.+...+
T Consensus 45 ~~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a-~~~a~wh~~lG~il~~~la---~~~~~r~~~---~~~~~~~ 117 (160)
T COG4244 45 DRWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAA-KQAAEWHHVLGNILLIVLA---ILTAWRYVH---RNDAVAA 117 (160)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh-HHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HcCChhh
Confidence 33556777777888888887777733 2222 12 2346689989887776654 345544333 3344445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 98 VLPWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 98 ~~~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
..|.=-.+|+++..+-..+..+|=..-
T Consensus 118 v~~~~L~lsl~~~~Lv~l~g~lG~~l~ 144 (160)
T COG4244 118 VSPAGLLLSLATVLLVALQGYLGAQLV 144 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667777889999999999999997654
No 88
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.76 E-value=1.5e+02 Score=23.96 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=29.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 60 YSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 60 ~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
--.|--.-......+.+..+.++. ++..+. +..-..-+-+-...+++...+..+|--
T Consensus 13 ~yiHVp~a~~~~~~~~~~~~~s~~-yL~~~~-----~~~D~la~~~a~iGf~f~tl~LitGai 69 (184)
T TIGR01191 13 MYVHVPAAWMAIGVYIMMAIASFI-FLVWKH-----PLSDLAAKAAAPIGAVFTLIALVTGSL 69 (184)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHcC-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456765555555666666677763 333221 111123333334555666666666653
No 89
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.39 E-value=81 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCC
Q 030324 144 VNSLGLGLALLSGFVIFAAVSPKSHVP 170 (179)
Q Consensus 144 ~n~~gl~~~~~~~~v~~~~~~~~~~r~ 170 (179)
+-+.++++.+..++|+|..+--+|++.
T Consensus 7 ~~iialiv~~iiaIvvW~iv~ieYrk~ 33 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIVYIEYRKI 33 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777999999999999885
No 90
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.36 E-value=2.1e+02 Score=18.66 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=25.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 030324 95 RVRVLPWHIFLGLYTYGLAVATAETGLLEK 124 (179)
Q Consensus 95 r~~~~~~H~~~G~~~f~la~~t~~lG~~ek 124 (179)
......-||+.|......+++....|+.-.
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999888633
No 91
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=24.03 E-value=5.1e+02 Score=22.95 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhccCCCCCCccchhhHHHHHHHHHHHHHHhhhhHHH-hhccccccc--cchhhhHHH
Q 030324 30 HLCLQGLALACGIFGIWT---KFHGIDGVVANFYSLHSWMGLICVSLFGAQWMMGFLSF-WHRAEVRMT--RVRVLPWHI 103 (179)
Q Consensus 30 H~~Lq~la~~~~~iGl~~---~~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~f-l~p~~~~~~--r~~~~~~H~ 103 (179)
-..+-.++-..+.+.+.- ..++.... ++|.+=|=..|+-.+..++--...--.-| +.|+.+++. ...-.-+-+
T Consensus 73 k~~lP~iGY~~a~~T~i~G~~~~~~~~~~-~~fVaGhVi~GvGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~ 151 (347)
T PF10951_consen 73 KYLLPIIGYLAAAITIIGGIYIFSSGPNA-AYFVAGHVIFGVGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSR 151 (347)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCCh-hhhccCceeechhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcch
Confidence 344445555444444433 24444445 78999999988754444433222222112 345533322 111123445
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcccCccC-CCCchHHHHHHHHHH-HHHHHHHhhhhccCCCCCCCC
Q 030324 104 FLGLYTYGLAVATAETGLLEKLTFLQTRRNVYK-SCPESMVVNSLGLGL-ALLSGFVIFAAVSPKSHVPVN 172 (179)
Q Consensus 104 ~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~-~~~~~~~~n~~gl~~-~~~~~~v~~~~~~~~~~r~~~ 172 (179)
.-|.....+.+.....|.-...+...++...+. +.+..++....++.- ++=...-+-.|++..|.+++|
T Consensus 152 ~~~~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er 222 (347)
T PF10951_consen 152 GQGNILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKER 222 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHh
Confidence 556666666666666665533222222111222 223334433322221 111222345677777766543
No 92
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=23.99 E-value=2.5e+02 Score=22.10 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=20.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 96 VRVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 96 ~~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
.....+|..+|....++.++-...++
T Consensus 46 ~~~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 46 GYIRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999988887776665
No 93
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=23.84 E-value=4.9e+02 Score=22.66 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=19.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 94 TRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 94 ~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
.|+..+.+|.......|.+-.++...|+.
T Consensus 132 L~s~wL~iHV~~~~lsYa~f~la~~~a~l 160 (319)
T CHL00045 132 LQSNWLMMHVSMMILSYAALLCGSLLSIA 160 (319)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666789998877777766655555543
No 94
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=22.87 E-value=3.7e+02 Score=22.06 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCC------ccchhhHHHHHHHHHHHHHHhhhhHH
Q 030324 27 KSVHLCLQGLALACGIFGIWTKFHG--IDGVVAN------FYSLHSWMGLICVSLFGAQWMMGFLS 84 (179)
Q Consensus 27 k~iH~~Lq~la~~~~~iGl~~~~~n--~~~~~~h------~~S~HswlGl~t~~l~~lQ~~~G~~~ 84 (179)
...||..=.+-+.+.+.|+...... ..+..+. ...+|-+.|.+.+.+.+.-.+.|+..
T Consensus 19 Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g 84 (235)
T PRK10171 19 RIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVG 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4689998888888888888763111 1111011 14589999999999888888888753
No 95
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.04 E-value=7.1e+02 Score=23.87 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHhhccccccc------cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 64 SWMGLICVSLFGAQWMMGFLSFWHRAEVRMT------RVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 64 swlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~------r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
-|...+..++..+ .+.+.+.|++|...++. |...+.==-+.|.++++.+++..++|++
T Consensus 196 Rw~~~~~~i~~~i-~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~ 259 (599)
T PF06609_consen 196 RWIFYIFIIWSGI-ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS 259 (599)
T ss_pred chHHHHHHHHHHH-HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4555545444443 34466566776532221 1122333467999999999999999998
No 96
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.62 E-value=2.2e+02 Score=17.90 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 77 QWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 77 Q~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..+.|++.+..|.. ...-.-..+|....+-++.....++.
T Consensus 6 ~iv~Gi~~l~~p~~------~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 6 FIVLGILLLFNPDA------SLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677877777774 22333455666666666555554444
No 97
>MTH00033 CYTB cytochrome b; Provisional
Probab=21.25 E-value=6.1e+02 Score=22.85 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=40.5
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhHHHh--hccccccc-------c-----chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 58 NFYSLHSWMGLICVSLFGAQWMMGFLSFW--HRAEVRMT-------R-----VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 58 h~~S~HswlGl~t~~l~~lQ~~~G~~~fl--~p~~~~~~-------r-----~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
|..-+.. .|-.+...+..|.+.|++.-+ .|...... | -.++..|++..-..|++...=..=|+.
T Consensus 23 ~~~~~w~-~Gsll~~~~~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~ 100 (383)
T MTH00033 23 NISYWWN-FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100 (383)
T ss_pred CchhHhh-HHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443432 488888888899999965543 44432111 1 123478888888888877777776665
No 98
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=20.86 E-value=3e+02 Score=27.02 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=29.2
Q ss_pred HHHHHHhhhhHHHhhccccc-ccc-chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 73 LFGAQWMMGFLSFWHRAEVR-MTR-VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 73 l~~lQ~~~G~~~fl~p~~~~-~~r-~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
-+.+...+|..-++.|+..+ +.. .++..+|-+.=.+..++++++..+|++
T Consensus 66 ~~~~~a~~g~~yy~vprl~~~~l~s~~La~~~~~~~~~~i~~~~i~l~~G~t 117 (712)
T PRK14485 66 AFVGNAIFAGVYYSTQRLLKARMFSDLLSKIHFWGWQLIIVSAAITLPLGFT 117 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34556677777777887533 232 344455555545555566666666764
No 99
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=20.76 E-value=4e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.074 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCC----CCCCC
Q 030324 146 SLGLGLALLSGFVIFAAVSPKSHVP----VNKPK 175 (179)
Q Consensus 146 ~~gl~~~~~~~~v~~~~~~~~~~r~----~~~~~ 175 (179)
.+.+.+.+...++.+..+++++-|- ||||+
T Consensus 161 ~~~l~~l~l~~~~~~~l~~S~~Gr~l~AiRedE~ 194 (314)
T COG4177 161 YLALLLLLLTLLVLERLVRSPFGRALRAIREDEI 194 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHhhhccCHH
Confidence 3445566677778899999999996 78875
No 100
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=20.67 E-value=4.7e+02 Score=21.27 Aligned_cols=71 Identities=15% Similarity=0.049 Sum_probs=42.5
Q ss_pred hhHhhhHHhhhccCCC---CCCchHHHHHHHHHHHHHHHHHHHhhh-hhccCCCCCCccchhhHHHHHHHHHHHHHH
Q 030324 6 IIISGEAILVHRWLPG---SRNLKKSVHLCLQGLALACGIFGIWTK-FHGIDGVVANFYSLHSWMGLICVSLFGAQW 78 (179)
Q Consensus 6 v~l~~eaiL~~r~~~~---~~~~~k~iH~~Lq~la~~~~~iGl~~~-~~n~~~~~~h~~S~HswlGl~t~~l~~lQ~ 78 (179)
+.+.|-+.+.|+...+ ..+.+...|. ....|+.+.++.+.+. .....+. +.+..+|-++|+.++.+.++..
T Consensus 18 ~~l~p~~~l~~~~~~~~lg~~p~~~~~~~-tG~~Al~llll~l~l~pL~~l~~~-~~l~~~RR~LGl~af~~a~lH~ 92 (205)
T PRK05419 18 AGLLPLAWLVYLGATGGLGADPVKDIEHF-TGLWALVFLLATLAVTPLRRLTGQ-PLLIRTRRLLGLWAFFYATLHL 92 (205)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777775532 3444444443 3444555555555552 2223445 5689999999999988776665
No 101
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=20.22 E-value=4.5e+02 Score=20.92 Aligned_cols=132 Identities=14% Similarity=0.015 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc-------CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhcccc-------
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGI-------DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEV------- 91 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~-------~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~------- 91 (179)
.+..||+.-..-+++.+.|+...+... .+. +....+|-+.|.+.+.+++.-.+ ...-...|...
T Consensus 9 ~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~-~~~~~~H~~~g~~~~~~~i~~~~-~~~~~~~~~~~d~~~~~~ 86 (204)
T TIGR01583 9 DRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGEL-WVAKNLHPFAGILFFISIIPMFL-KWWRRMIPAKYDIRWMMK 86 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHH
Confidence 347899988888888899988844311 122 34677999999988776654422 11111222211
Q ss_pred --------ccc---cchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchH-----HH-HHHHHHHHHH
Q 030324 92 --------RMT---RVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESM-----VV-NSLGLGLALL 154 (179)
Q Consensus 92 --------~~~---r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~-----~~-n~~gl~~~~~ 154 (179)
++. ..++-+..+..-..++++..+.+.+|+.- ++..-. .. ..+ ++. .. ...+.+++++
T Consensus 87 ~~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m--~~~~~~-~~-~~~-~~~~~~~~~~H~~~a~l~~~~ 161 (204)
T TIGR01583 87 VGGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFM--WFLDFP-ST-AFS-IELLRISALIHNFSAIILAVG 161 (204)
T ss_pred hchHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHcc-cc-cCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 000 11233778888888888888889999862 211100 00 012 221 12 4556666777
Q ss_pred HHHHhhhhcc
Q 030324 155 SGFVIFAAVS 164 (179)
Q Consensus 155 ~~~v~~~~~~ 164 (179)
..+-+|..+.
T Consensus 162 vi~Hiy~a~~ 171 (204)
T TIGR01583 162 FIVHIYMAVF 171 (204)
T ss_pred HHHHHHHHHh
Confidence 7777887776
Done!