Query 030324
Match_columns 179
No_of_seqs 140 out of 440
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 83.7 13 0.00045 29.2 10.7 57 27-83 19-83 (235)
2 1kqf_C FDH-N gamma, formate de 81.7 8.6 0.00029 29.8 8.7 94 26-122 14-133 (217)
3 1rkl_A Dolichyl-diphosphooligo 30.6 79 0.0027 18.1 4.1 27 141-169 8-34 (36)
4 1kqf_C FDH-N gamma, formate de 28.6 1.9E+02 0.0065 21.8 9.8 44 71-115 22-70 (217)
5 4a56_A PULS, pullulanase secre 26.2 57 0.0019 22.6 3.2 20 127-146 19-38 (93)
6 3sol_A Type II secretion pathw 25.0 62 0.0021 22.5 3.2 20 127-146 19-38 (94)
7 2lat_A Dolichyl-diphosphooligo 24.1 87 0.003 18.0 3.2 24 142-167 9-32 (37)
8 2qjy_A Cytochrome B; cytochrom 23.6 3.7E+02 0.013 23.5 10.8 57 66-122 47-117 (445)
9 4gd3_A NI/Fe-hydrogenase 1 B-t 22.3 2.1E+02 0.0071 22.0 6.3 53 70-122 25-83 (235)
10 2l8s_A Integrin alpha-1; trans 18.9 1.8E+02 0.0062 18.0 4.2 16 145-160 16-31 (54)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=83.72 E-value=13 Score=29.22 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc--CCC-CCC-----ccchhhHHHHHHHHHHHHHHhhhhH
Q 030324 27 KSVHLCLQGLALACGIFGIWTKFHGI--DGV-VAN-----FYSLHSWMGLICVSLFGAQWMMGFL 83 (179)
Q Consensus 27 k~iH~~Lq~la~~~~~iGl~~~~~n~--~~~-~~h-----~~S~HswlGl~t~~l~~lQ~~~G~~ 83 (179)
+..||..=.+-+.+...|+....-.. .|. ..+ ...+|-++|++.+.+.++-.+.++.
T Consensus 19 R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 19 RIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999887777777888887743211 111 012 2358999999999999998888875
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=81.74 E-value=8.6 Score=29.76 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc------C-CCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhcccccc-----
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGI------D-GVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRM----- 93 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~------~-~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~----- 93 (179)
....||..=.+-+++.+.|+...+-.. . +. .....+|-++|++.+.+++.-. ........|. +..
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~-~~~~~~H~~~G~~~~~l~~~r~-~r~~r~~~p~-~~~~~~~~ 90 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTP-QMGRILHPFFGIAIFVALMFMF-VRFVHHNIPD-KKDIPWLL 90 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSH-HHHHHHHHHHHHHHHHHHHHHH-HHHGGGSCCC-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-hhHHHHHH
Confidence 458999988888888888887642111 1 11 2357899999999888776532 2222222333 111
Q ss_pred --------------ccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 94 --------------TRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 94 --------------~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
.....-|..+..=.+.+++..+...+|+.
T Consensus 91 ~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 91 NIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp SHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112256666556777788888888875
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=30.61 E-value=79 Score=18.09 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 030324 141 SMVVNSLGLGLALLSGFVIFAAVSPKSHV 169 (179)
Q Consensus 141 ~~~~n~~gl~~~~~~~~v~~~~~~~~~~r 169 (179)
..++|++|+.. +..+|+|..+..+..+
T Consensus 8 ~~lan~lG~~~--~~LIvlYH~v~~n~~~ 34 (36)
T 1rkl_A 8 NSLAITFGIVM--MTLIVIYHAVDSTMSP 34 (36)
T ss_dssp GHHHHHHHHHH--HHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhccccC
Confidence 46789988885 5556666665554433
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=28.62 E-value=1.9e+02 Score=21.82 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhHHHhhcccc---c--cccchhhhHHHHHHHHHHHHHHH
Q 030324 71 VSLFGAQWMMGFLSFWHRAEV---R--MTRVRVLPWHIFLGLYTYGLAVA 115 (179)
Q Consensus 71 ~~l~~lQ~~~G~~~fl~p~~~---~--~~r~~~~~~H~~~G~~~f~la~~ 115 (179)
.++++.+++.|+... +|... . ..+.....+|..+|.+.+++.+.
T Consensus 22 a~~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~ 70 (217)
T 1kqf_C 22 VICFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF 70 (217)
T ss_dssp HHHHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 345555667887554 55421 1 12334668999999999876665
No 5
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=26.16 E-value=57 Score=22.60 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=17.2
Q ss_pred hhhcccCccCCCCchHHHHH
Q 030324 127 FLQTRRNVYKSCPESMVVNS 146 (179)
Q Consensus 127 f~~~~~~~~~~~~~~~~~n~ 146 (179)
|.+..++|++.|.|..|.|.
T Consensus 19 yLK~~C~~~diPd~~~I~~~ 38 (93)
T 4a56_A 19 YLKNKCNRSDLPADEAINRA 38 (93)
T ss_dssp HHHHHSCCTTSCCHHHHHHH
T ss_pred HHHHcCCCCCCCcHHHHHHH
Confidence 66677899999999999885
No 6
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=25.01 E-value=62 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=17.2
Q ss_pred hhhcccCccCCCCchHHHHH
Q 030324 127 FLQTRRNVYKSCPESMVVNS 146 (179)
Q Consensus 127 f~~~~~~~~~~~~~~~~~n~ 146 (179)
|.+..++|++.|.|..|.|.
T Consensus 19 yLK~~C~~~diPd~~~I~~~ 38 (94)
T 3sol_A 19 YLKMRCNRSDLPDEQSILNV 38 (94)
T ss_dssp HHHHHSCCTTSCCHHHHHHH
T ss_pred HHHHcCCCCCCCcHHHHHHH
Confidence 66677899999999999885
No 7
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=24.10 E-value=87 Score=18.02 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCC
Q 030324 142 MVVNSLGLGLALLSGFVIFAAVSPKS 167 (179)
Q Consensus 142 ~~~n~~gl~~~~~~~~v~~~~~~~~~ 167 (179)
.++|++|+.. +..+|+|..+..+.
T Consensus 9 ~lan~lG~~~--~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 9 IFANMLGVSL--FLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhcCc
Confidence 5779888875 45555555544433
No 8
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=23.57 E-value=3.7e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHhh--ccccc----------ccc--chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 66 MGLICVSLFGAQWMMGFLSFWH--RAEVR----------MTR--VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 66 lGl~t~~l~~lQ~~~G~~~fl~--p~~~~----------~~r--~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
+|-++...+.+|.+.|++.-++ |.... +.+ -.++..|+...-..|++...=..=|++
T Consensus 47 fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rgly 117 (445)
T 2qjy_A 47 WGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLY 117 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999866554 33221 111 123467888766666666666666654
No 9
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=22.26 E-value=2.1e+02 Score=22.04 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhHHHhhccc--ccccc----chhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 70 CVSLFGAQWMMGFLSFWHRAE--VRMTR----VRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 70 t~~l~~lQ~~~G~~~fl~p~~--~~~~r----~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..++++.+++.|+.....+.. ....+ .....+|..+|.+.+++.+.=...++.
T Consensus 25 ~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 25 TVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667778754322110 11111 123469999999999999998888875
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=18.87 E-value=1.8e+02 Score=18.04 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 030324 145 NSLGLGLALLSGFVIF 160 (179)
Q Consensus 145 n~~gl~~~~~~~~v~~ 160 (179)
.+.|+++....+.++|
T Consensus 16 vl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 16 AFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666555555555
Done!