Query 030324
Match_columns 179
No_of_seqs 140 out of 440
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 19:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 60.5 25 0.0018 25.0 11.7 133 26-164 13-174 (216)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 59.2 3.8 0.00027 20.5 2.4 24 147-172 3-26 (27)
3 d1q90b_ f.21.1.2 (B:) Cytochro 44.4 54 0.0039 24.0 10.5 60 62-121 29-102 (212)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 43.2 62 0.0045 24.4 10.4 57 66-122 32-102 (261)
5 d1kqfc_ f.21.1.1 (C:) Formate 25.5 1E+02 0.0074 21.4 7.4 65 57-122 106-174 (216)
6 d1q90b_ f.21.1.2 (B:) Cytochro 22.0 1.1E+02 0.0077 22.3 6.4 56 59-122 79-134 (212)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 17.9 1.5E+02 0.011 22.1 6.6 56 59-122 78-133 (261)
8 d1ffta_ f.24.1.1 (A:) Cytochro 12.7 3.2E+02 0.024 21.9 10.4 32 80-111 382-414 (501)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 11.2 2.7E+02 0.019 20.2 6.3 54 59-122 65-118 (246)
10 d2axti1 f.23.37.1 (I:1-35) Pho 9.5 1E+02 0.0073 16.0 2.2 17 68-84 9-25 (35)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=60.49 E-value=25 Score=24.98 Aligned_cols=133 Identities=9% Similarity=-0.055 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcc-------CCCCCCccchhhHHHHHHHHHHHHHHhhhhHHHhhccccc------
Q 030324 26 KKSVHLCLQGLALACGIFGIWTKFHGI-------DGVVANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVR------ 92 (179)
Q Consensus 26 ~k~iH~~Lq~la~~~~~iGl~~~~~n~-------~~~~~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~------ 92 (179)
....||..-.+-+++.+.|+...+-.. ... .....+|-++|++-+...+.-....+-....+....
T Consensus 13 ~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~-~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
T d1kqfc_ 13 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTP-QMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNI 91 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 457999999999999999988743221 112 234678999988766655543333332111111100
Q ss_pred ---------cc--cchhhhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccCccCCCCchH----HH-HHHHHHHHHHHH
Q 030324 93 ---------MT--RVRVLPWHIFLGLYTYGLAVATAETGLLEKLTFLQTRRNVYKSCPESM----VV-NSLGLGLALLSG 156 (179)
Q Consensus 93 ---------~~--r~~~~~~H~~~G~~~f~la~~t~~lG~~ek~~f~~~~~~~~~~~~~~~----~~-n~~gl~~~~~~~ 156 (179)
.. ...+-|..+......+++...-+.+|+.- ++.... ...+.+.. .+ ...+.+++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l--~~~~~~---~~~~~~~~~~~~~iH~~~~~l~~~~vi 166 (216)
T d1kqfc_ 92 VEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVII--WRPYFA---QYFPMQVVRYSLLIHAAAGIILIHAIL 166 (216)
T ss_dssp HHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHT--CTTTTG---GGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HccchH---HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11233778888888888888888899762 221110 11121121 12 456677777888
Q ss_pred HHhhhhcc
Q 030324 157 FVIFAAVS 164 (179)
Q Consensus 157 ~v~~~~~~ 164 (179)
+-+|..+.
T Consensus 167 ~Hvy~a~~ 174 (216)
T d1kqfc_ 167 IHMYMAFW 174 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887764
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=59.18 E-value=3.8 Score=20.51 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCC
Q 030324 147 LGLGLALLSGFVIFAAVSPKSHVPVN 172 (179)
Q Consensus 147 ~gl~~~~~~~~v~~~~~~~~~~r~~~ 172 (179)
+|++.+..+.+ +.....+|+||+|
T Consensus 3 lgli~~tl~gl--f~aayqqykrpne 26 (27)
T d2e74g1 3 LGLVFATLGGL--FYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHHHHH--HHHHHHHTTSCCC
T ss_pred eeehHHHHHHH--HHHHHHHhcCCCC
Confidence 45554444443 2233367888875
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=44.37 E-value=54 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHhh--ccccccc-------cc-----hhhhHHHHHHHHHHHHHHHHHHHhh
Q 030324 62 LHSWMGLICVSLFGAQWMMGFLSFWH--RAEVRMT-------RV-----RVLPWHIFLGLYTYGLAVATAETGL 121 (179)
Q Consensus 62 ~HswlGl~t~~l~~lQ~~~G~~~fl~--p~~~~~~-------r~-----~~~~~H~~~G~~~f~la~~t~~lG~ 121 (179)
+-=++|-++...+.+|.+.|++..++ |...... |. .++-.|++..-..+++...=..-++
T Consensus 29 ~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~ 102 (212)
T d1q90b_ 29 IFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVY 102 (212)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHH
Confidence 33458999999999999999977654 3322111 11 2346898887777777666665554
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.21 E-value=62 Score=24.38 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHhh--ccccc----------cc--cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 66 MGLICVSLFGAQWMMGFLSFWH--RAEVR----------MT--RVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 66 lGl~t~~l~~lQ~~~G~~~fl~--p~~~~----------~~--r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
+|-++...+.+|.+.|++..++ |.... +. .-.++..|++..-..+++...=..-++.
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~ 102 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLY 102 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 6888999999999999987654 43211 11 1124578999998888888888777765
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=25.50 E-value=1e+02 Score=21.42 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=46.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhHHHhhccc----cccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 57 ANFYSLHSWMGLICVSLFGAQWMMGFLSFWHRAE----VRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 57 ~h~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~----~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..+.....+.....+....++.+.|+..+. |.. +.........+|.+...+...+.++=+.+++.
T Consensus 106 ~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~-~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~ 174 (216)
T d1kqfc_ 106 GKYNAGQKMMFWSIMSMIFVLLVTGVIIWR-PYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174 (216)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHTCT-TTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778888888888999999999996543 322 22223344579999888888887777776654
No 6
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.04 E-value=1.1e+02 Score=22.28 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=40.3
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 59 FYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 59 ~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..+.|.|-.=..+++..++..=++.. +..++.| ..-...|..++.+.++++.+|+.
T Consensus 79 iR~lH~~gAs~~~~~~~lHm~r~~~~----gsyk~pr----e~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 79 IRSIHRWSASMMVLMMVLHVFRVYLT----GGFKRPR----ELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT----TTTSSSC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHHHHc----CcccCcc----cceehHhHHHHHHHHHHHHhhhh
Confidence 46788887777777777777766521 2122222 36678999999999999999985
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.93 E-value=1.5e+02 Score=22.06 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=40.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 59 FYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 59 ~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..+.|.|-.=..+++..++..=|+.. +..++.| ..-...|..++++.++++.+|+.
T Consensus 78 iR~~H~~ga~~~~~~~~lH~~r~~~~----gsy~~pr----e~~W~~Gv~l~~l~~~~af~GY~ 133 (261)
T d3cx5c2 78 LRYLHANGASFFFMVMFMHMAKGLYY----GSYRSPR----VTLWNVGVIIFILTIATAFLGYC 133 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----TTTSTTC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHh----ccccCcc----chhHHhhHHHHHHHHHHHHhhhh
Confidence 46788888777777777777777632 2122222 25578899999999999999986
No 8
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=12.71 E-value=3.2e+02 Score=21.88 Aligned_cols=32 Identities=3% Similarity=0.070 Sum_probs=19.8
Q ss_pred hhhHHHhhccccc-cccchhhhHHHHHHHHHHH
Q 030324 80 MGFLSFWHRAEVR-MTRVRVLPWHIFLGLYTYG 111 (179)
Q Consensus 80 ~G~~~fl~p~~~~-~~r~~~~~~H~~~G~~~f~ 111 (179)
.|.+.+++|+... ...+++..+|-+.....+.
T Consensus 382 ~~~~y~~~P~l~Gr~l~~~l~~~~f~~~~iG~~ 414 (501)
T d1ffta_ 382 FAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFF 414 (501)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 3445788888633 3455566778776555544
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.15 E-value=2.7e+02 Score=20.23 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=35.3
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030324 59 FYSLHSWMGLICVSLFGAQWMMGFLSFWHRAEVRMTRVRVLPWHIFLGLYTYGLAVATAETGLL 122 (179)
Q Consensus 59 ~~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~~~H~~~G~~~f~la~~t~~lG~~ 122 (179)
..+.|.|---.-+.+..+...=|+.. +..++.|. ...|..++++.++++.+|+.
T Consensus 65 iR~~H~~gas~~~~~~~lHm~r~~~~----~sy~~~~~------w~~G~~l~~l~m~~af~GY~ 118 (246)
T d1ppjc2 65 IRYMHANGASMFFICLYMHVGRGLYY----GSYTFLET------WNIGVILLLTVMATAFMGYV 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----TGGGSHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHhHHHHHHHHHHHHHHHHHHh----cCccchHH------HHHHHHHHHHHHHHHHeecc
Confidence 46788885555555666666655522 21222221 56899999999999999985
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.52 E-value=1e+02 Score=16.03 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhHH
Q 030324 68 LICVSLFGAQWMMGFLS 84 (179)
Q Consensus 68 l~t~~l~~lQ~~~G~~~ 84 (179)
.+++++|+.-.++||++
T Consensus 9 y~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 9 YIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 35667777778888855
Done!