BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030327
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/108 (87%), Positives = 104/108 (96%)
Query: 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
ALTP LK+TLDKVVT +KVVLFMKGTKDFPQCGFS TVVQILKSLNAPFE+VNILENE+L
Sbjct: 2 ALTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELL 61
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
RQGLKEYSSWPTFPQLYI+GEFFGGCDITVEAYK+GELQE +EKA+C+
Sbjct: 62 RQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVEKAMCS 109
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 86/109 (78%), Positives = 99/109 (90%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
+ALTP+LK TL+K+V KVVLFMKGT+DFP CGFS+TVVQILK+LN PFE VNILENEM
Sbjct: 1 SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
LRQGLKEYS+WPTFPQLYI GEFFGGCDIT+EA+K GELQE +EKA+C+
Sbjct: 61 LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAMCS 109
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLRQGLKE 137
LD +V +KVV+F+KGT + PQCGFS+ VVQIL+ + N+L++ LRQG+K+
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70
Query: 138 YSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
YS+WPT PQ+Y+ GEF GGCDI ++ ++NG+L E L+K
Sbjct: 71 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 108
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN---APFETVNILENE 129
L+ E++ ++ + VVLFMKGT +FP+CGFS + +L + A F N+LE+
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
LR+G+KE+S WPT PQLY+ EF GGCD+ ++GEL +LLE+A
Sbjct: 61 ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEA 107
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
++ P+L+ L + V+LFMKG K +CGFS +++IL S +ET +ILE+E +
Sbjct: 1 SMAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV 60
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGEL 169
RQGLK YS+WPT+PQLY++GE GG DI E +NGEL
Sbjct: 61 RQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 98
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 77 LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
+ +T++K+ + N ++L+MKG+ P CGFS VQ L + F V+IL+N +R
Sbjct: 1 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 60
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
L +Y++WPTFPQL+++GE GGCDI +E Y+ GELQ+L+++
Sbjct: 61 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 102
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 77 LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
+ +T++K+ + N ++L+MKG+ P CGFS VQ L + F V+IL+N +R
Sbjct: 21 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 80
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
L +Y++WPTFPQL+++GE GGCDI +E Y+ GELQ+L+++
Sbjct: 81 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 83 KVVTGNK--VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
KV+T NK V+LFMKG K +CGFS +++IL S +ET +ILE+E +RQGLK +S+
Sbjct: 9 KVLT-NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67
Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLE 174
WPT+PQLY+ G+ GG DI E NGEL +L+
Sbjct: 68 WPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 62/104 (59%)
Query: 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
+ +L L K+ +LFMKGT P+CGFS +V+IL N F + +I +E +R
Sbjct: 1 MKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVR 60
Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
QGLK YSSWPT+PQLY+ GE GG DI E + EL + KA
Sbjct: 61 QGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKA 104
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 76 ELKSTLDK---VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE---NE 129
EL + L K + + VV+F K CG+ + V Q+L + A ++ V + E
Sbjct: 6 ELDAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGS 60
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
L+ L ++ T P ++I G+ GGCD VE ++ EL LL+ A T
Sbjct: 61 QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 110
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 76 ELKSTLDK---VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE---NE 129
EL + L K + + VV+F K CG+ + V Q+L + A ++ V + E
Sbjct: 5 ELDAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGS 59
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
L+ L ++ T P ++I G+ GGCD VE ++ EL LL+ A T
Sbjct: 60 QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
A+ L+ + K V N VV++ K C +S V + K LN V + +E+
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVEL--DEL 53
Query: 131 LRQG------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
QG L+ + T P ++I G+ GGC TV+ Y+ GEL+ LL +A
Sbjct: 54 GAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 105
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG 134
EL+ L ++ ++VV+F K C S V ++ SL N+LE + + G
Sbjct: 4 EELRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVE---CNVLELDQVDDG 55
Query: 135 ------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
L E ++ T P +++ GGCD T +AY++G LQ+LL++ L
Sbjct: 56 ARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDL 104
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 50 TNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV 109
T NL ++SN +++ LA A +++ T ++ N VV+F K + C +
Sbjct: 15 TENLYFQSMESNTSSSLENLATAPVNQIQET----ISDNCVVIFSKTS-----CSYCTMA 65
Query: 110 VQILKSLNAPFETV--NILE-NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166
++ +N ++ V ++LE + L + + T P++++ G F GG T +K
Sbjct: 66 KKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKE 125
Query: 167 GELQELLEK 175
G+L L+ +
Sbjct: 126 GKLLPLVHQ 134
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160
P C + +L A F ++ LR ++E S TFPQ++I GGCD
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 161 VEAYKNGELQELLE 174
G+L LL+
Sbjct: 74 YALEDEGKLDSLLK 87
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
T PQ+++ G+F G ++ Y N EL ++ ++
Sbjct: 69 IETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
T PQ+++ G+F G ++ Y N EL ++ ++
Sbjct: 69 IETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
T PQ+++ G+F G ++ Y N EL ++ ++
Sbjct: 69 IETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE 162
C +SH +L S F+ + I N R+ + + S T PQ++I+ + GG D
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 163 AYKNGELQELLE 174
G L LL+
Sbjct: 71 LDARGGLDPLLK 82
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--- 127
A+ ++ ++ K VT N VV++ K C + V + K L V + +
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGP 56
Query: 128 -NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
L++ L+ + T P +++ G+ GGC TV+ + G+L+ +L +A
Sbjct: 57 QGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 103 CGFSH-TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFG 155
C +S T+ + + LN P +LE +EM ++ L+E S T P +YI G+ G
Sbjct: 30 CPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 89
Query: 156 GCDITVEAYKNGELQELLE 174
G KNG+L E+L+
Sbjct: 90 GNSDLETLKKNGKLAEILK 108
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 108 TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161
T+ + + LN P +LE +EM ++ L+E S T P +YI G+ GG
Sbjct: 53 TLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLE 112
Query: 162 EAYKNGELQELLE 174
KNG+L E+L+
Sbjct: 113 TLKKNGKLAEILK 125
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 108 TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161
T+ + + LN P +LE +EM ++ L+E S T P +YI G+ GG
Sbjct: 33 TLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLE 92
Query: 162 EAYKNGELQELLE 174
KNG+L E+L+
Sbjct: 93 TLKKNGKLAEILK 105
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE 162
C + H +L S F+ + I N R+ + + S T PQ++I+ + GG D
Sbjct: 11 CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 163 AYKNGELQELLE 174
G L LL+
Sbjct: 71 LDARGGLDPLLK 82
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILE-NEMLRQGL 135
+ + + ++ N VV+F K + C + ++ +N ++ V ++LE + L
Sbjct: 18 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 72
Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
+ + T P++++ G F GG T +K G+L L+ +
Sbjct: 73 YKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 112
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILE-NEMLRQGL 135
+ + + ++ N VV+F K + C + ++ +N ++ V ++LE + L
Sbjct: 26 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 80
Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
+ + T P++++ G F GG T +K G+L L+ +
Sbjct: 81 YKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 120
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF-----ETVNIL---ENEMLRQGLKEYS 139
KVV+F+K P C F ++L L PF E V+I + ++ L++ +
Sbjct: 12 GKVVVFIK-----PTCPFCRKTQELLSQL--PFKEGLLEFVDITATSDTNEIQDYLQQLT 64
Query: 140 SWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
T P+++I E GGC +K GEL L++
Sbjct: 65 GARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI---LENEMLRQGLKEYSSWPTFP 145
+++L+ + P C + +L + ++ L EM+++ + TFP
Sbjct: 7 EIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMVQRA----NGRNTFP 57
Query: 146 QLYIEGEFFGGCDITVEAYKNGELQELLE 174
Q++I GGCD G+L LL+
Sbjct: 58 QIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFG 155
C +SH + L + L P V +L+ N+M ++ L E + T P +YI G+ G
Sbjct: 27 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 86
Query: 156 GCD 158
G D
Sbjct: 87 GND 89
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 109 VVQILKSLNAPFETVNILENEMLRQGLKEYSSWP--TFPQLYIEGEFFGGCDITVEAYKN 166
V +IL ++ V+I ++ LR ++ + P T PQ+ ++ G ++ VEA +
Sbjct: 24 VTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIVNGDQYCGDYELFVEAVEQ 83
Query: 167 GELQELLEKAL 177
LQE L+ AL
Sbjct: 84 NTLQEFLKLAL 94
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNIL---ENEMLRQGLKEYSSW 141
KVV+F+K P C + +IL L E V+I ++ L++ +
Sbjct: 13 GKVVVFIK-----PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGA 67
Query: 142 PTFPQLYIEGEFFGGCDITVEAYKNGEL 169
T P+++I + GGC V ++GEL
Sbjct: 68 RTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILENEMLRQG------LKEYSSWPTFPQLYIEGEFFG 155
C +SH + L + L P V +L+ +++G L E + T P +YI G+ G
Sbjct: 271 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 330
Query: 156 GCD 158
G D
Sbjct: 331 GND 333
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160
P C F Q+L FE + IL ++ ++ S T PQ++I G+ GG D
Sbjct: 178 PGCPFCAKAKQLLHDKGLSFEEI-ILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSD-D 235
Query: 161 VEAY 164
+E Y
Sbjct: 236 LEKY 239
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 109 VVQILKSLNAPFETVNILENEMLRQGLKEYSSWP--TFPQLYIEGEFFGGCDITVEAYKN 166
V +IL ++ V+I ++ LR ++ + P T PQ+ + G ++ VEA +
Sbjct: 24 VTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQ 83
Query: 167 GELQELLEKA 176
LQE L+ A
Sbjct: 84 DTLQEFLKLA 93
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 109 VVQILKSLNAPFETVNILENEMLRQGLKEYSSWP--TFPQLYIEGEFFGGCDITVEAYKN 166
V +IL ++ V+I ++ LR ++ + P T PQ+ + G ++ VEA +
Sbjct: 31 VTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQ 90
Query: 167 GELQELLEKA 176
LQE L+ A
Sbjct: 91 DTLQEFLKLA 100
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILENEMLRQG------LKEYSSWPTFPQLYIEGEFFG 155
C + H + L + L P V +L+ +++G L E + T P +YI G+ G
Sbjct: 35 CPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 94
Query: 156 GCD 158
G D
Sbjct: 95 GND 97
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILE----NEMLRQGLKEYSSW 141
KVV+F+K P C +S +IL L E V+I NE ++ L++ +
Sbjct: 13 KVVVFIK-----PTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNE-IQDYLQQLTGA 66
Query: 142 PTFPQLYIEGEFFGGCDITVEAYKNGEL 169
T P+++I + GG V ++GEL
Sbjct: 67 RTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 100 FPQCGFSHTVVQILKSLNAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158
+ C F + +LK F+ I +NE + + PQ++I+ + GGCD
Sbjct: 23 WSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCD 82
Query: 159 ITVEAYKNGELQELLE 174
G+L LL
Sbjct: 83 DIYALDGAGKLDPLLH 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,236,953
Number of Sequences: 62578
Number of extensions: 205385
Number of successful extensions: 539
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 38
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)