Query 030327
Match_columns 179
No_of_seqs 162 out of 1300
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10824 glutaredoxin-4; Provi 100.0 1.3E-32 2.9E-37 207.8 12.9 104 76-179 3-106 (115)
2 COG0278 Glutaredoxin-related p 100.0 6.7E-32 1.4E-36 197.7 11.5 103 75-177 2-105 (105)
3 TIGR00365 monothiol glutaredox 100.0 4E-29 8.8E-34 183.0 12.4 96 78-173 2-97 (97)
4 TIGR02189 GlrX-like_plant Glut 100.0 1.1E-27 2.4E-32 176.0 11.4 92 82-178 2-96 (99)
5 cd03028 GRX_PICOT_like Glutare 100.0 9.2E-28 2E-32 173.1 10.5 90 81-170 1-90 (90)
6 PHA03050 glutaredoxin; Provisi 99.9 4.3E-27 9.3E-32 175.8 12.8 96 78-178 3-104 (108)
7 PTZ00062 glutaredoxin; Provisi 99.9 3.8E-27 8.2E-32 193.8 13.3 102 74-175 99-200 (204)
8 KOG0911 Glutaredoxin-related p 99.9 2E-26 4.3E-31 190.2 12.1 101 76-176 127-227 (227)
9 KOG1752 Glutaredoxin and relat 99.9 1.4E-24 3.1E-29 161.4 12.3 97 77-178 3-102 (104)
10 PRK10638 glutaredoxin 3; Provi 99.9 7.9E-23 1.7E-27 144.6 10.8 82 88-174 2-83 (83)
11 TIGR02181 GRX_bact Glutaredoxi 99.9 1.1E-22 2.5E-27 141.7 9.5 79 90-173 1-79 (79)
12 cd03031 GRX_GRX_like Glutaredo 99.9 1.8E-21 3.8E-26 152.9 11.4 88 89-176 1-93 (147)
13 cd03418 GRX_GRXb_1_3_like Glut 99.9 7.8E-21 1.7E-25 130.5 10.4 74 89-167 1-75 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.8 1.9E-20 4.1E-25 129.1 9.5 73 88-165 1-73 (73)
15 TIGR02180 GRX_euk Glutaredoxin 99.8 2.7E-20 5.8E-25 129.6 9.3 79 90-173 1-84 (84)
16 COG0695 GrxC Glutaredoxin and 99.8 3E-20 6.6E-25 131.7 8.7 76 89-169 2-79 (80)
17 cd03419 GRX_GRXh_1_2_like Glut 99.8 5.3E-20 1.1E-24 128.0 8.8 79 89-172 1-82 (82)
18 TIGR02190 GlrX-dom Glutaredoxi 99.8 2.2E-19 4.7E-24 126.1 9.6 75 84-164 4-78 (79)
19 cd03029 GRX_hybridPRX5 Glutare 99.8 4.6E-19 9.9E-24 121.7 9.2 70 89-164 2-71 (72)
20 cd03030 GRX_SH3BGR Glutaredoxi 99.8 6.5E-19 1.4E-23 128.3 8.9 85 90-174 2-91 (92)
21 PRK11200 grxA glutaredoxin 1; 99.8 1.6E-18 3.5E-23 122.8 10.0 73 89-166 2-81 (85)
22 TIGR02183 GRXA Glutaredoxin, G 99.8 1.9E-18 4.2E-23 123.4 9.7 74 90-168 2-82 (86)
23 cd02066 GRX_family Glutaredoxi 99.8 5.2E-18 1.1E-22 113.2 9.7 71 89-164 1-71 (72)
24 PF00462 Glutaredoxin: Glutare 99.7 4.5E-17 9.7E-22 108.2 7.9 60 90-154 1-60 (60)
25 PRK12759 bifunctional gluaredo 99.7 1.1E-16 2.4E-21 143.6 10.3 82 88-176 2-91 (410)
26 PRK10329 glutaredoxin-like pro 99.6 4.3E-15 9.4E-20 105.4 10.1 69 89-163 2-72 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.6 2.6E-15 5.6E-20 103.3 7.8 64 90-159 1-65 (72)
28 KOG2824 Glutaredoxin-related p 99.5 2.1E-13 4.5E-18 115.9 8.3 90 87-176 130-224 (281)
29 TIGR02196 GlrX_YruB Glutaredox 99.4 8.6E-13 1.9E-17 88.3 9.3 66 89-159 1-66 (74)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.4 3.6E-12 7.7E-17 85.2 8.8 66 89-159 1-66 (73)
31 PF04908 SH3BGR: SH3-binding, 99.3 1.3E-11 2.9E-16 91.0 9.0 87 89-175 2-98 (99)
32 TIGR02200 GlrX_actino Glutared 99.3 5.6E-11 1.2E-15 80.9 9.3 65 89-158 1-67 (77)
33 cd02973 TRX_GRX_like Thioredox 99.1 1.6E-10 3.4E-15 77.5 6.8 58 89-155 2-64 (67)
34 cd03041 GST_N_2GST_N GST_N fam 99.0 4.1E-09 8.9E-14 73.0 9.4 72 90-166 2-75 (77)
35 cd00570 GST_N_family Glutathio 98.9 4.6E-09 1E-13 68.4 6.7 69 91-164 2-70 (71)
36 cd03040 GST_N_mPGES2 GST_N fam 98.9 1.8E-08 3.8E-13 69.2 9.2 70 89-166 1-74 (77)
37 cd03037 GST_N_GRX2 GST_N famil 98.8 2.3E-08 5E-13 67.7 8.1 68 91-165 2-70 (71)
38 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.5E-07 3.2E-12 67.8 6.5 70 77-155 3-77 (89)
39 cd03059 GST_N_SspA GST_N famil 98.6 2.9E-07 6.3E-12 62.1 7.6 69 91-165 2-70 (73)
40 cd03055 GST_N_Omega GST_N fami 98.6 3.1E-07 6.7E-12 65.4 8.0 72 87-164 16-88 (89)
41 cd03060 GST_N_Omega_like GST_N 98.6 3.4E-07 7.3E-12 62.1 7.4 67 91-163 2-69 (71)
42 cd03045 GST_N_Delta_Epsilon GS 98.6 3.5E-07 7.6E-12 61.9 7.4 70 91-165 2-73 (74)
43 PF13417 GST_N_3: Glutathione 98.6 2.7E-07 5.8E-12 63.5 6.7 69 92-166 1-69 (75)
44 cd03036 ArsC_like Arsenate Red 98.5 8.9E-08 1.9E-12 71.4 4.3 46 90-140 1-46 (111)
45 TIGR00411 redox_disulf_1 small 98.5 7.7E-07 1.7E-11 61.1 8.0 55 89-152 2-62 (82)
46 cd03051 GST_N_GTT2_like GST_N 98.5 4.9E-07 1.1E-11 60.6 6.5 69 91-164 2-73 (74)
47 PF05768 DUF836: Glutaredoxin- 98.5 1.7E-06 3.8E-11 60.8 9.0 53 89-151 1-57 (81)
48 cd03056 GST_N_4 GST_N family, 98.5 1E-06 2.2E-11 59.1 7.6 69 91-164 2-72 (73)
49 cd02977 ArsC_family Arsenate R 98.5 1.8E-07 3.8E-12 68.6 3.9 46 90-140 1-46 (105)
50 cd02975 PfPDO_like_N Pyrococcu 98.4 2.7E-06 5.8E-11 63.4 9.7 66 76-149 10-81 (113)
51 KOG3029 Glutathione S-transfer 98.4 1.5E-06 3.3E-11 75.0 9.4 85 82-174 81-173 (370)
52 PRK01655 spxA transcriptional 98.4 8.4E-07 1.8E-11 68.2 6.1 40 90-134 2-41 (131)
53 TIGR00412 redox_disulf_2 small 98.3 3E-06 6.5E-11 58.8 7.0 54 90-154 3-60 (76)
54 cd03054 GST_N_Metaxin GST_N fa 98.3 6.8E-06 1.5E-10 55.7 7.9 58 101-166 14-71 (72)
55 PHA02125 thioredoxin-like prot 98.3 5.1E-06 1.1E-10 57.3 7.3 56 90-155 2-57 (75)
56 TIGR01617 arsC_related transcr 98.2 2.5E-06 5.5E-11 63.9 5.8 44 90-138 1-44 (117)
57 TIGR01295 PedC_BrcD bacterioci 98.2 7.9E-06 1.7E-10 61.9 8.6 73 80-157 15-106 (122)
58 cd03061 GST_N_CLIC GST_N famil 98.2 1.2E-05 2.6E-10 58.4 9.1 78 88-166 4-84 (91)
59 cd03032 ArsC_Spx Arsenate Redu 98.2 2.9E-06 6.3E-11 63.4 5.9 44 90-138 2-45 (115)
60 PHA02278 thioredoxin-like prot 98.2 1.4E-05 3E-10 59.0 8.8 67 85-155 12-86 (103)
61 PRK12559 transcriptional regul 98.1 4.8E-06 1E-10 64.1 5.2 34 90-128 2-35 (131)
62 cd03053 GST_N_Phi GST_N family 98.1 2.5E-05 5.3E-10 53.1 8.0 72 90-166 2-75 (76)
63 cd03058 GST_N_Tau GST_N family 98.1 2.5E-05 5.4E-10 53.1 7.8 69 91-165 2-71 (74)
64 PRK13344 spxA transcriptional 98.1 6.6E-06 1.4E-10 63.4 5.0 34 90-128 2-35 (132)
65 cd03052 GST_N_GDAP1 GST_N fami 98.0 2.1E-05 4.6E-10 54.1 6.9 69 91-164 2-72 (73)
66 cd02953 DsbDgamma DsbD gamma f 98.0 2.1E-05 4.6E-10 56.7 6.9 65 81-149 4-78 (104)
67 cd02957 Phd_like Phosducin (Ph 98.0 6.2E-05 1.4E-09 55.5 9.3 67 88-163 25-98 (113)
68 KOG0910 Thioredoxin-like prote 98.0 1.8E-05 3.9E-10 62.5 6.6 69 77-154 50-128 (150)
69 cd03035 ArsC_Yffb Arsenate Red 98.0 7.2E-06 1.6E-10 60.8 4.1 36 90-130 1-36 (105)
70 cd03076 GST_N_Pi GST_N family, 98.0 7.2E-05 1.6E-09 51.0 8.7 70 90-165 2-71 (73)
71 cd03039 GST_N_Sigma_like GST_N 98.0 6.5E-05 1.4E-09 50.7 7.9 69 91-164 2-70 (72)
72 cd02989 Phd_like_TxnDC9 Phosdu 97.9 4.3E-05 9.4E-10 56.9 7.5 65 86-158 21-92 (113)
73 cd02954 DIM1 Dim1 family; Dim1 97.9 7.1E-05 1.5E-09 56.5 8.4 60 88-155 15-82 (114)
74 cd03080 GST_N_Metaxin_like GST 97.9 8E-05 1.7E-09 51.0 7.9 69 90-166 2-72 (75)
75 cd03033 ArsC_15kD Arsenate Red 97.9 1.7E-05 3.6E-10 59.6 4.6 36 89-129 1-36 (113)
76 KOG4023 Uncharacterized conser 97.9 1.9E-05 4.1E-10 58.3 4.6 88 89-176 3-99 (108)
77 PF13192 Thioredoxin_3: Thiore 97.9 8.4E-05 1.8E-09 51.4 7.5 49 101-154 8-60 (76)
78 TIGR02187 GlrX_arch Glutaredox 97.9 5.2E-05 1.1E-09 62.2 7.5 72 72-152 119-195 (215)
79 cd03042 GST_N_Zeta GST_N famil 97.9 6.5E-05 1.4E-09 50.3 6.7 69 91-164 2-72 (73)
80 cd03049 GST_N_3 GST_N family, 97.9 6.2E-05 1.3E-09 50.9 6.4 68 91-164 2-72 (73)
81 cd02949 TRX_NTR TRX domain, no 97.8 0.00024 5.3E-09 50.7 9.3 62 88-157 14-83 (97)
82 PF00085 Thioredoxin: Thioredo 97.8 0.00013 2.8E-09 51.3 7.7 62 87-156 17-86 (103)
83 PRK15317 alkyl hydroperoxide r 97.8 5.5E-05 1.2E-09 69.6 7.1 77 71-156 101-182 (517)
84 TIGR02182 GRXB Glutaredoxin, G 97.8 8E-05 1.7E-09 60.6 7.3 68 92-166 2-70 (209)
85 cd02985 TRX_CDSP32 TRX family, 97.8 0.00023 5.1E-09 51.6 9.1 64 87-155 15-85 (103)
86 cd03048 GST_N_Ure2p_like GST_N 97.8 0.00016 3.4E-09 49.9 7.7 70 90-165 2-76 (81)
87 PRK10387 glutaredoxin 2; Provi 97.8 0.00011 2.4E-09 58.8 7.8 69 91-166 2-71 (210)
88 cd03038 GST_N_etherase_LigE GS 97.8 9.1E-05 2E-09 51.6 6.3 65 101-166 14-81 (84)
89 TIGR03140 AhpF alkyl hydropero 97.7 8.2E-05 1.8E-09 68.4 7.3 77 71-156 102-183 (515)
90 cd02947 TRX_family TRX family; 97.7 0.00042 9.1E-09 46.7 8.8 60 88-155 11-77 (93)
91 cd01659 TRX_superfamily Thiore 97.7 0.00013 2.9E-09 44.8 5.7 55 91-151 2-61 (69)
92 PF13409 GST_N_2: Glutathione 97.7 7.4E-05 1.6E-09 50.8 4.5 65 102-166 1-69 (70)
93 PRK09381 trxA thioredoxin; Pro 97.7 0.00034 7.3E-09 50.7 8.1 63 87-157 21-91 (109)
94 TIGR01068 thioredoxin thioredo 97.6 0.00076 1.7E-08 47.0 9.5 60 89-156 16-83 (101)
95 cd03050 GST_N_Theta GST_N fami 97.6 0.00039 8.4E-09 47.4 7.5 70 91-165 2-73 (76)
96 PTZ00051 thioredoxin; Provisio 97.6 0.00036 7.8E-09 49.3 7.5 70 80-157 10-87 (98)
97 cd02987 Phd_like_Phd Phosducin 97.6 0.00049 1.1E-08 55.2 9.1 79 89-176 85-174 (175)
98 COG3118 Thioredoxin domain-con 97.6 0.00016 3.5E-09 62.8 6.3 74 76-157 32-113 (304)
99 TIGR03143 AhpF_homolog putativ 97.6 0.00019 4.2E-09 66.7 7.3 75 71-154 461-540 (555)
100 PRK10996 thioredoxin 2; Provis 97.6 0.00033 7.1E-09 53.9 7.3 67 81-155 45-120 (139)
101 COG1393 ArsC Arsenate reductas 97.5 0.00012 2.6E-09 55.5 4.5 43 89-136 2-44 (117)
102 cd02994 PDI_a_TMX PDIa family, 97.5 0.00048 1E-08 49.1 7.3 63 81-152 11-82 (101)
103 cd02986 DLP Dim1 family, Dim1- 97.5 0.00037 8E-09 52.8 7.0 72 76-154 4-81 (114)
104 TIGR00862 O-ClC intracellular 97.5 0.00063 1.4E-08 57.3 8.8 77 89-166 2-81 (236)
105 cd03044 GST_N_EF1Bgamma GST_N 97.5 0.00054 1.2E-08 46.7 6.9 69 92-165 3-73 (75)
106 TIGR02187 GlrX_arch Glutaredox 97.5 0.00056 1.2E-08 56.1 8.0 70 81-154 14-90 (215)
107 cd02951 SoxW SoxW family; SoxW 97.5 0.00033 7.2E-09 52.1 6.1 69 79-151 4-93 (125)
108 COG4545 Glutaredoxin-related p 97.4 0.00048 1E-08 48.7 6.0 61 91-156 5-78 (85)
109 PRK09481 sspA stringent starva 97.4 0.00063 1.4E-08 55.1 7.8 71 89-165 10-80 (211)
110 PF14595 Thioredoxin_9: Thiore 97.4 8.9E-05 1.9E-09 56.9 2.6 79 73-157 28-114 (129)
111 cd02948 TRX_NDPK TRX domain, T 97.4 0.0027 5.8E-08 45.9 10.3 65 81-154 10-84 (102)
112 cd02963 TRX_DnaJ TRX domain, D 97.4 0.0012 2.7E-08 48.5 8.6 62 86-155 23-93 (111)
113 cd03047 GST_N_2 GST_N family, 97.4 0.0009 1.9E-08 45.2 7.2 68 91-163 2-71 (73)
114 TIGR01616 nitro_assoc nitrogen 97.4 0.00025 5.5E-09 54.3 4.7 35 89-128 2-36 (126)
115 cd02962 TMX2 TMX2 family; comp 97.4 0.0011 2.3E-08 52.3 8.2 65 89-157 49-124 (152)
116 KOG0907 Thioredoxin [Posttrans 97.4 0.0012 2.5E-08 49.1 7.7 71 77-155 10-88 (106)
117 PRK10853 putative reductase; P 97.4 0.00028 6E-09 53.4 4.4 35 90-129 2-36 (118)
118 cd02984 TRX_PICOT TRX domain, 97.3 0.0014 3.1E-08 46.0 7.8 60 88-155 15-82 (97)
119 PRK10026 arsenate reductase; P 97.3 0.00042 9.2E-09 54.2 5.0 37 88-129 2-38 (141)
120 cd03034 ArsC_ArsC Arsenate Red 97.3 0.00035 7.6E-09 52.1 4.4 34 90-128 1-34 (112)
121 cd03000 PDI_a_TMX3 PDIa family 97.3 0.00082 1.8E-08 48.4 6.2 63 77-147 5-76 (104)
122 TIGR00014 arsC arsenate reduct 97.3 0.00037 7.9E-09 52.2 4.3 35 90-129 1-35 (114)
123 cd02965 HyaE HyaE family; HyaE 97.3 0.0018 3.9E-08 48.7 8.0 63 87-157 27-99 (111)
124 cd03005 PDI_a_ERp46 PDIa famil 97.3 0.0013 2.8E-08 46.4 7.0 66 81-154 10-86 (102)
125 cd02996 PDI_a_ERp44 PDIa famil 97.3 0.0018 3.9E-08 46.9 7.7 64 81-152 11-89 (108)
126 cd03003 PDI_a_ERdj5_N PDIa fam 97.3 0.0019 4.1E-08 46.1 7.6 66 81-154 11-85 (101)
127 cd03004 PDI_a_ERdj5_C PDIa fam 97.2 0.0025 5.5E-08 45.5 8.3 55 89-151 21-83 (104)
128 cd03043 GST_N_1 GST_N family, 97.2 0.002 4.3E-08 43.9 7.3 64 101-164 8-72 (73)
129 cd03006 PDI_a_EFP1_N PDIa fami 97.2 0.0015 3.2E-08 49.0 6.9 50 101-153 39-96 (113)
130 cd03057 GST_N_Beta GST_N famil 97.2 0.0018 4E-08 44.0 6.8 69 91-165 2-73 (77)
131 cd03046 GST_N_GTT1_like GST_N 97.2 0.0019 4.2E-08 43.4 6.9 62 104-165 9-72 (76)
132 cd02956 ybbN ybbN protein fami 97.2 0.0013 2.9E-08 46.2 6.3 60 88-155 13-80 (96)
133 cd02950 TxlA TRX-like protein 97.2 0.0019 4E-08 49.9 7.3 69 81-155 13-91 (142)
134 cd02959 ERp19 Endoplasmic reti 97.1 0.0016 3.4E-08 48.8 6.5 73 77-155 8-91 (117)
135 PF13098 Thioredoxin_2: Thiore 97.1 0.0025 5.4E-08 46.0 7.3 67 88-158 6-103 (112)
136 cd03065 PDI_b_Calsequestrin_N 97.1 0.0016 3.5E-08 49.5 6.4 69 79-155 17-101 (120)
137 PLN00410 U5 snRNP protein, DIM 97.1 0.002 4.4E-08 50.4 7.2 51 101-152 33-89 (142)
138 PRK15113 glutathione S-transfe 97.1 0.0031 6.8E-08 51.1 8.4 75 88-165 4-80 (214)
139 cd02955 SSP411 TRX domain, SSP 97.1 0.0028 6.2E-08 48.3 7.5 73 80-156 7-96 (124)
140 PLN02817 glutathione dehydroge 97.0 0.0044 9.5E-08 52.8 9.1 64 102-166 72-135 (265)
141 cd03001 PDI_a_P5 PDIa family, 97.0 0.0043 9.3E-08 43.8 7.6 50 90-147 21-76 (103)
142 cd02993 PDI_a_APS_reductase PD 97.0 0.0047 1E-07 45.0 7.6 46 101-148 31-83 (109)
143 cd02999 PDI_a_ERp44_like PDIa 97.0 0.0055 1.2E-07 44.3 7.7 54 87-148 18-77 (100)
144 cd02961 PDI_a_family Protein D 96.9 0.0079 1.7E-07 41.3 8.0 62 80-149 7-77 (101)
145 PLN02378 glutathione S-transfe 96.9 0.0035 7.7E-08 51.0 7.1 65 101-166 18-82 (213)
146 KOG0406 Glutathione S-transfer 96.9 0.0046 1E-07 52.1 8.0 73 88-166 8-81 (231)
147 cd02988 Phd_like_VIAF Phosduci 96.9 0.0075 1.6E-07 49.2 8.7 89 78-177 90-192 (192)
148 cd02952 TRP14_like Human TRX-r 96.9 0.0035 7.6E-08 47.6 6.3 56 101-156 38-105 (119)
149 PTZ00062 glutaredoxin; Provisi 96.8 0.006 1.3E-07 50.4 7.6 65 79-157 7-78 (204)
150 PRK10877 protein disulfide iso 96.8 0.0087 1.9E-07 50.1 8.6 65 89-158 110-218 (232)
151 PF03960 ArsC: ArsC family; I 96.8 0.0034 7.3E-08 46.3 5.3 36 101-136 4-39 (110)
152 TIGR01126 pdi_dom protein disu 96.7 0.014 3E-07 40.8 7.8 51 90-149 17-75 (102)
153 PLN02473 glutathione S-transfe 96.6 0.0093 2E-07 47.9 7.5 71 90-165 3-75 (214)
154 cd03002 PDI_a_MPD1_like PDI fa 96.6 0.0094 2E-07 42.6 6.8 57 90-152 21-85 (109)
155 COG3019 Predicted metal-bindin 96.6 0.011 2.3E-07 46.5 7.4 78 86-168 24-104 (149)
156 PF13728 TraF: F plasmid trans 96.6 0.0078 1.7E-07 49.9 6.9 73 72-149 106-189 (215)
157 TIGR02740 TraF-like TraF-like 96.5 0.0092 2E-07 51.1 7.0 66 79-149 159-235 (271)
158 cd02992 PDI_a_QSOX PDIa family 96.3 0.018 3.8E-07 42.7 6.8 63 81-149 11-84 (114)
159 cd02997 PDI_a_PDIR PDIa family 96.3 0.013 2.9E-07 41.2 5.8 50 101-154 27-88 (104)
160 PTZ00443 Thioredoxin domain-co 96.3 0.029 6.2E-07 47.0 8.5 59 88-154 53-119 (224)
161 TIGR01262 maiA maleylacetoacet 96.3 0.011 2.3E-07 47.3 5.7 65 101-165 6-73 (210)
162 PRK00293 dipZ thiol:disulfide 96.2 0.026 5.6E-07 53.2 8.7 76 74-153 460-547 (571)
163 PF13899 Thioredoxin_7: Thiore 96.2 0.011 2.3E-07 41.0 4.8 65 77-149 6-79 (82)
164 cd02998 PDI_a_ERp38 PDIa famil 96.2 0.021 4.6E-07 40.0 6.4 45 101-149 28-81 (105)
165 cd03008 TryX_like_RdCVF Trypar 96.2 0.021 4.5E-07 44.8 6.7 42 84-129 22-77 (146)
166 cd03077 GST_N_Alpha GST_N fami 96.2 0.052 1.1E-06 37.4 8.1 69 90-164 2-72 (79)
167 cd03007 PDI_a_ERp29_N PDIa fam 96.1 0.07 1.5E-06 40.4 9.1 72 80-152 10-91 (116)
168 cd03009 TryX_like_TryX_NRX Try 96.1 0.038 8.1E-07 41.1 7.6 65 86-154 17-113 (131)
169 PRK13728 conjugal transfer pro 96.0 0.018 3.8E-07 46.9 5.8 58 90-152 73-148 (181)
170 cd02964 TryX_like_family Trypa 96.0 0.046 9.9E-07 41.0 7.7 64 87-154 17-113 (132)
171 COG2999 GrxB Glutaredoxin 2 [P 95.9 0.0076 1.6E-07 49.3 3.4 67 92-165 3-70 (215)
172 cd03079 GST_N_Metaxin2 GST_N f 95.9 0.023 5E-07 39.7 5.2 57 102-165 16-72 (74)
173 KOG4244 Failed axon connection 95.8 0.032 7E-07 48.0 6.7 74 81-162 37-112 (281)
174 cd02995 PDI_a_PDI_a'_C PDIa fa 95.8 0.038 8.2E-07 38.8 6.1 55 89-152 20-84 (104)
175 COG0625 Gst Glutathione S-tran 95.7 0.035 7.6E-07 44.6 6.6 71 91-166 2-74 (211)
176 PLN02309 5'-adenylylsulfate re 95.7 0.034 7.4E-07 51.2 7.0 58 88-152 366-433 (457)
177 cd03020 DsbA_DsbC_DsbG DsbA fa 95.6 0.053 1.2E-06 43.6 7.2 66 89-159 80-189 (197)
178 TIGR00424 APS_reduc 5'-adenyly 95.6 0.06 1.3E-06 49.7 8.2 60 87-152 371-439 (463)
179 TIGR02739 TraF type-F conjugat 95.6 0.047 1E-06 46.7 6.9 71 74-149 138-219 (256)
180 KOG1422 Intracellular Cl- chan 95.4 0.046 9.9E-07 45.6 6.2 63 101-166 19-83 (221)
181 PRK10357 putative glutathione 95.4 0.049 1.1E-06 43.3 6.2 69 91-165 2-71 (202)
182 PRK13703 conjugal pilus assemb 95.4 0.06 1.3E-06 45.9 6.9 70 75-149 132-212 (248)
183 PLN02395 glutathione S-transfe 95.4 0.079 1.7E-06 42.4 7.4 71 90-166 3-75 (215)
184 TIGR02738 TrbB type-F conjugat 95.3 0.071 1.5E-06 42.0 6.7 59 86-149 50-124 (153)
185 PRK13972 GSH-dependent disulfi 95.2 0.12 2.5E-06 41.8 7.8 70 90-165 2-80 (215)
186 PRK03147 thiol-disulfide oxido 95.1 0.11 2.3E-06 40.1 7.3 64 87-154 61-152 (173)
187 cd03078 GST_N_Metaxin1_like GS 95.1 0.078 1.7E-06 36.4 5.8 57 102-166 15-71 (73)
188 PF11009 DUF2847: Protein of u 95.1 0.33 7.1E-06 36.2 9.3 72 80-155 9-92 (105)
189 TIGR02661 MauD methylamine deh 94.9 0.22 4.8E-06 40.0 8.7 64 87-154 74-160 (189)
190 cd02967 mauD Methylamine utili 94.9 0.16 3.4E-06 36.5 7.1 58 87-148 21-83 (114)
191 TIGR00385 dsbE periplasmic pro 94.9 0.22 4.7E-06 39.2 8.4 41 84-128 60-103 (173)
192 TIGR01130 ER_PDI_fam protein d 94.8 0.13 2.9E-06 45.5 7.9 66 80-153 10-87 (462)
193 PF06953 ArsD: Arsenical resis 94.8 0.14 3.1E-06 39.2 6.8 56 107-163 30-97 (123)
194 PRK11752 putative S-transferas 94.7 0.14 3E-06 43.3 7.4 76 84-165 39-126 (264)
195 PF06110 DUF953: Eukaryotic pr 94.6 0.17 3.7E-06 38.5 6.9 74 76-149 7-95 (119)
196 cd03010 TlpA_like_DsbE TlpA-li 94.6 0.31 6.7E-06 35.8 8.3 38 87-128 25-66 (127)
197 cd02958 UAS UAS family; UAS is 94.6 0.18 3.9E-06 36.8 6.9 74 76-154 5-91 (114)
198 PRK15412 thiol:disulfide inter 94.6 0.22 4.8E-06 39.7 7.9 47 86-136 67-117 (185)
199 PF08534 Redoxin: Redoxin; In 94.5 0.26 5.6E-06 37.0 7.7 49 85-137 26-82 (146)
200 cd02982 PDI_b'_family Protein 94.4 0.13 2.8E-06 36.2 5.5 52 89-149 15-74 (103)
201 PF13905 Thioredoxin_8: Thiore 94.2 0.35 7.7E-06 33.6 7.4 45 90-138 4-57 (95)
202 cd02972 DsbA_family DsbA famil 94.1 0.13 2.8E-06 34.8 5.0 30 91-125 2-37 (98)
203 PTZ00102 disulphide isomerase; 94.0 0.24 5.1E-06 44.5 7.8 65 81-153 42-118 (477)
204 PF02798 GST_N: Glutathione S- 94.0 0.28 6.1E-06 33.5 6.4 60 105-164 11-74 (76)
205 PTZ00057 glutathione s-transfe 93.8 0.48 1E-05 38.1 8.4 71 89-164 4-79 (205)
206 KOG0908 Thioredoxin-like prote 93.7 0.16 3.5E-06 43.6 5.7 73 74-155 9-88 (288)
207 KOG2501 Thioredoxin, nucleored 93.7 0.7 1.5E-05 36.9 8.9 70 81-154 27-129 (157)
208 KOG0190 Protein disulfide isom 93.6 0.22 4.7E-06 46.4 6.8 68 79-153 33-111 (493)
209 smart00594 UAS UAS domain. 93.5 0.57 1.2E-05 34.9 7.9 68 76-149 15-92 (122)
210 PRK10542 glutathionine S-trans 93.4 0.25 5.4E-06 39.0 6.0 61 105-165 10-74 (201)
211 cd03075 GST_N_Mu GST_N family, 93.1 0.85 1.8E-05 31.6 7.7 63 103-165 9-79 (82)
212 PTZ00102 disulphide isomerase; 92.9 0.22 4.7E-06 44.8 5.5 53 88-148 376-436 (477)
213 PF07315 DUF1462: Protein of u 92.7 0.61 1.3E-05 34.0 6.6 70 91-164 1-89 (93)
214 cd03011 TlpA_like_ScsD_MtbDsbE 92.6 0.14 3.1E-06 37.2 3.3 25 88-116 21-45 (123)
215 cd02970 PRX_like2 Peroxiredoxi 92.5 0.96 2.1E-05 33.6 7.9 60 83-148 19-86 (149)
216 KOG3425 Uncharacterized conser 92.5 0.35 7.6E-06 37.1 5.3 54 74-127 12-75 (128)
217 cd02966 TlpA_like_family TlpA- 92.1 0.85 1.8E-05 31.4 6.7 47 87-137 19-74 (116)
218 PF06764 DUF1223: Protein of u 92.1 0.87 1.9E-05 37.6 7.7 64 90-158 2-86 (202)
219 PF03190 Thioredox_DsbH: Prote 92.0 0.95 2.1E-05 36.3 7.6 72 80-155 29-117 (163)
220 cd03012 TlpA_like_DipZ_like Tl 91.7 0.92 2E-05 33.4 6.9 27 86-116 22-48 (126)
221 COG4837 Uncharacterized protei 91.5 1 2.2E-05 33.2 6.6 76 85-164 2-96 (106)
222 COG0526 TrxA Thiol-disulfide i 91.4 0.76 1.6E-05 30.9 5.7 50 101-152 42-100 (127)
223 PRK11509 hydrogenase-1 operon 91.3 0.95 2.1E-05 35.0 6.7 74 81-158 27-108 (132)
224 PF00578 AhpC-TSA: AhpC/TSA fa 91.3 0.9 2E-05 32.7 6.4 63 81-149 20-89 (124)
225 KOG1695 Glutathione S-transfer 91.1 1 2.3E-05 37.3 7.2 62 102-164 11-72 (206)
226 COG2143 Thioredoxin-related pr 90.9 1 2.3E-05 36.3 6.7 89 78-171 32-155 (182)
227 KOG0867 Glutathione S-transfer 90.7 1.2 2.5E-05 36.9 7.2 71 89-164 2-74 (226)
228 PRK14018 trifunctional thiored 90.7 1.3 2.8E-05 41.6 8.3 27 86-116 55-81 (521)
229 PF04134 DUF393: Protein of un 90.2 0.92 2E-05 33.0 5.6 64 102-166 6-76 (114)
230 TIGR01130 ER_PDI_fam protein d 90.0 0.58 1.3E-05 41.4 5.1 53 87-149 364-425 (462)
231 PRK11657 dsbG disulfide isomer 89.9 0.38 8.2E-06 40.7 3.6 32 89-125 120-155 (251)
232 COG3634 AhpF Alkyl hydroperoxi 89.7 2.5 5.4E-05 38.5 8.8 86 74-166 104-196 (520)
233 cd02960 AGR Anterior Gradient 89.4 0.7 1.5E-05 35.7 4.5 34 76-113 11-45 (130)
234 KOG0868 Glutathione S-transfer 89.1 0.89 1.9E-05 37.5 5.1 73 89-166 5-80 (217)
235 KOG4277 Uncharacterized conser 88.9 0.43 9.4E-06 42.3 3.4 75 75-154 31-112 (468)
236 cd02971 PRX_family Peroxiredox 88.7 1.7 3.8E-05 31.9 6.2 58 86-148 21-86 (140)
237 cd02969 PRX_like1 Peroxiredoxi 87.3 4.3 9.3E-05 31.4 7.9 42 81-126 19-67 (171)
238 cd03017 PRX_BCP Peroxiredoxin 87.0 3.8 8.3E-05 30.1 7.2 48 87-138 23-78 (140)
239 PLN02919 haloacid dehalogenase 85.5 3.1 6.6E-05 42.2 7.6 28 85-116 418-445 (1057)
240 cd03018 PRX_AhpE_like Peroxire 85.5 3.8 8.3E-05 30.5 6.5 45 101-147 39-90 (149)
241 cd03023 DsbA_Com1_like DsbA fa 85.4 0.98 2.1E-05 33.5 3.2 56 108-163 87-149 (154)
242 PRK09437 bcp thioredoxin-depen 85.3 4.3 9.2E-05 30.8 6.8 49 86-137 29-84 (154)
243 PF10568 Tom37: Outer mitochon 84.4 4.6 9.9E-05 27.8 6.0 54 103-164 14-71 (72)
244 TIGR02540 gpx7 putative glutat 84.0 3.6 7.8E-05 31.4 5.9 23 87-113 22-44 (153)
245 cd03014 PRX_Atyp2cys Peroxired 83.8 3.9 8.5E-05 30.4 6.0 54 87-145 26-85 (143)
246 cd00340 GSH_Peroxidase Glutath 83.8 3 6.6E-05 31.8 5.4 55 87-147 22-91 (152)
247 cd03022 DsbA_HCCA_Iso DsbA fam 83.4 1.7 3.7E-05 33.8 3.9 57 107-163 124-187 (192)
248 PTZ00056 glutathione peroxidas 83.2 4.4 9.6E-05 32.9 6.4 35 87-125 39-80 (199)
249 cd03146 GAT1_Peptidase_E Type 82.8 14 0.00031 30.1 9.3 94 73-176 16-110 (212)
250 PLN02412 probable glutathione 82.7 5.9 0.00013 31.0 6.8 23 87-113 29-51 (167)
251 KOG4420 Uncharacterized conser 81.5 0.66 1.4E-05 40.2 1.0 72 90-166 27-100 (325)
252 COG5494 Predicted thioredoxin/ 80.8 3.5 7.5E-05 34.8 4.9 70 87-165 10-85 (265)
253 PLN02399 phospholipid hydroper 80.2 6.2 0.00014 33.3 6.4 35 87-125 99-140 (236)
254 PF01323 DSBA: DSBA-like thior 80.2 1.3 2.8E-05 34.5 2.2 56 108-163 125-188 (193)
255 cd03023 DsbA_Com1_like DsbA fa 79.8 0.97 2.1E-05 33.5 1.3 33 88-125 7-44 (154)
256 cd02968 SCO SCO (an acronym fo 79.6 11 0.00024 27.7 7.0 57 86-148 21-92 (142)
257 PTZ00256 glutathione peroxidas 79.5 5.7 0.00012 31.5 5.7 46 101-147 51-111 (183)
258 TIGR03143 AhpF_homolog putativ 79.4 6 0.00013 37.0 6.6 69 72-149 348-425 (555)
259 cd03015 PRX_Typ2cys Peroxiredo 79.4 7.1 0.00015 30.4 6.2 37 87-127 29-73 (173)
260 PHA03075 glutaredoxin-like pro 77.5 3.1 6.8E-05 31.8 3.4 31 88-123 3-33 (123)
261 TIGR01626 ytfJ_HI0045 conserve 77.3 8.7 0.00019 31.2 6.2 40 84-128 57-105 (184)
262 COG4232 Thiol:disulfide interc 76.0 6 0.00013 37.6 5.5 89 80-176 464-567 (569)
263 PF02114 Phosducin: Phosducin; 75.0 4.5 9.8E-05 34.7 4.2 81 89-178 148-239 (265)
264 KOG0912 Thiol-disulfide isomer 74.4 16 0.00034 32.6 7.4 67 81-154 6-85 (375)
265 cd03016 PRX_1cys Peroxiredoxin 73.6 16 0.00035 29.4 7.0 37 88-127 26-69 (203)
266 cd03019 DsbA_DsbA DsbA family, 73.4 4.5 9.7E-05 31.0 3.5 52 107-158 100-158 (178)
267 PF13462 Thioredoxin_4: Thiore 73.3 5.8 0.00013 29.8 4.0 23 139-161 132-154 (162)
268 COG3011 Predicted thiol-disulf 73.1 21 0.00045 27.9 7.1 71 86-163 6-82 (137)
269 PF03575 Peptidase_S51: Peptid 72.6 14 0.00031 28.4 6.1 63 105-176 1-65 (154)
270 PRK10954 periplasmic protein d 72.1 4.2 9E-05 33.0 3.1 53 107-159 124-183 (207)
271 KOG0191 Thioredoxin/protein di 71.7 4.9 0.00011 35.7 3.7 59 86-151 47-111 (383)
272 KOG0190 Protein disulfide isom 71.3 4 8.6E-05 38.2 3.1 28 101-128 394-429 (493)
273 PF09822 ABC_transp_aux: ABC-t 70.2 22 0.00048 29.7 7.3 73 72-144 11-89 (271)
274 cd03019 DsbA_DsbA DsbA family, 69.9 5.8 0.00013 30.3 3.4 34 87-125 16-55 (178)
275 TIGR00385 dsbE periplasmic pro 69.3 35 0.00076 26.5 7.8 44 107-154 105-151 (173)
276 TIGR03137 AhpC peroxiredoxin. 67.9 23 0.0005 28.1 6.6 37 87-127 31-75 (187)
277 cd05295 MDH_like Malate dehydr 66.6 16 0.00034 33.9 5.9 64 102-165 3-82 (452)
278 PRK00522 tpx lipid hydroperoxi 66.2 23 0.00049 27.6 6.1 25 87-115 44-69 (167)
279 cd02974 AhpF_NTD_N Alkyl hydro 65.7 22 0.00048 25.6 5.5 46 74-125 3-57 (94)
280 PF10087 DUF2325: Uncharacteri 65.1 39 0.00085 23.9 6.7 56 77-137 38-95 (97)
281 PTZ00137 2-Cys peroxiredoxin; 64.9 37 0.0008 29.1 7.6 44 81-127 92-142 (261)
282 cd03010 TlpA_like_DsbE TlpA-li 64.6 50 0.0011 23.8 7.5 66 80-154 46-114 (127)
283 PF13462 Thioredoxin_4: Thiore 63.6 7.2 0.00016 29.2 2.8 36 88-128 14-57 (162)
284 cd02991 UAS_ETEA UAS family, E 62.7 56 0.0012 24.2 7.4 70 77-149 6-83 (116)
285 PRK13599 putative peroxiredoxi 61.4 36 0.00078 28.0 6.7 39 87-128 28-73 (215)
286 cd03008 TryX_like_RdCVF Trypar 60.9 77 0.0017 24.6 10.3 67 89-162 65-136 (146)
287 COG5429 Uncharacterized secret 60.4 11 0.00024 32.2 3.5 59 89-152 44-122 (261)
288 TIGR03759 conj_TIGR03759 integ 60.3 25 0.00054 29.2 5.5 60 86-154 108-170 (200)
289 COG3340 PepE Peptidase E [Amin 59.5 1.1E+02 0.0023 25.9 9.8 89 78-174 21-113 (224)
290 PRK13190 putative peroxiredoxi 59.4 40 0.00086 27.2 6.6 28 101-128 38-72 (202)
291 KOG0913 Thiol-disulfide isomer 59.3 3.1 6.6E-05 35.5 0.0 64 81-153 34-106 (248)
292 PRK10382 alkyl hydroperoxide r 57.8 39 0.00085 27.2 6.2 36 88-127 32-75 (187)
293 PRK13189 peroxiredoxin; Provis 57.8 44 0.00095 27.6 6.7 8 101-108 46-53 (222)
294 KOG0191 Thioredoxin/protein di 57.4 24 0.00053 31.2 5.4 27 85-116 161-187 (383)
295 PRK15000 peroxidase; Provision 56.1 61 0.0013 26.2 7.1 23 86-111 33-55 (200)
296 PF10865 DUF2703: Domain of un 56.1 22 0.00049 27.0 4.3 47 101-154 13-72 (120)
297 KOG2454 Betaine aldehyde dehyd 55.6 15 0.00034 33.8 3.8 64 75-138 204-268 (583)
298 PRK15317 alkyl hydroperoxide r 55.3 31 0.00066 31.8 5.8 38 73-116 2-43 (517)
299 PRK05282 (alpha)-aspartyl dipe 54.5 1.3E+02 0.0028 25.2 9.4 89 76-175 19-108 (233)
300 PRK13191 putative peroxiredoxi 54.3 56 0.0012 26.8 6.7 40 87-129 33-79 (215)
301 TIGR01162 purE phosphoribosyla 54.0 56 0.0012 26.0 6.4 64 102-165 10-100 (156)
302 PF15643 Tox-PL-2: Papain fold 54.0 42 0.00091 24.9 5.2 26 102-127 20-46 (100)
303 cd03013 PRX5_like Peroxiredoxi 53.7 72 0.0016 24.5 7.0 61 81-145 23-93 (155)
304 TIGR03439 methyl_EasF probable 53.7 1E+02 0.0022 27.1 8.6 60 102-164 84-148 (319)
305 PF11287 DUF3088: Protein of u 53.2 21 0.00046 27.0 3.6 47 102-151 23-76 (112)
306 PLN02790 transketolase 52.2 38 0.00081 32.7 6.1 86 88-177 541-640 (654)
307 PRK10606 btuE putative glutath 52.1 52 0.0011 26.5 6.1 8 101-108 35-42 (183)
308 cd04911 ACT_AKiii-YclM-BS_1 AC 51.6 18 0.00038 25.4 2.8 23 102-124 14-36 (76)
309 KOG3171 Conserved phosducin-li 50.7 35 0.00076 29.1 4.9 37 141-177 209-251 (273)
310 KOG1672 ATP binding protein [P 50.5 42 0.00091 28.0 5.3 78 78-160 75-159 (211)
311 PTZ00253 tryparedoxin peroxida 49.8 69 0.0015 25.6 6.5 38 88-128 37-81 (199)
312 PLN02234 1-deoxy-D-xylulose-5- 49.2 17 0.00037 35.1 3.2 79 87-173 544-628 (641)
313 PF04566 RNA_pol_Rpb2_4: RNA p 46.3 19 0.00041 24.2 2.2 13 147-159 1-13 (63)
314 cd00079 HELICc Helicase superf 46.2 1E+02 0.0022 21.6 8.3 55 78-138 18-73 (131)
315 cd03129 GAT1_Peptidase_E_like 45.5 1.6E+02 0.0034 23.6 10.7 89 76-175 17-110 (210)
316 cd03145 GAT1_cyanophycinase Ty 43.7 1.8E+02 0.0039 23.7 10.9 65 102-175 42-112 (217)
317 PF07449 HyaE: Hydrogenase-1 e 43.7 92 0.002 23.2 5.8 79 81-163 19-104 (107)
318 cd03024 DsbA_FrnE DsbA family, 43.6 73 0.0016 24.8 5.6 54 107-160 132-193 (201)
319 PF02780 Transketolase_C: Tran 43.0 33 0.00071 25.1 3.3 65 86-159 8-78 (124)
320 TIGR01689 EcbF-BcbF capsule bi 42.0 88 0.0019 23.7 5.6 50 73-126 25-86 (126)
321 PF12689 Acid_PPase: Acid Phos 41.8 1.6E+02 0.0035 23.5 7.3 73 75-153 48-134 (169)
322 PLN02683 pyruvate dehydrogenas 41.7 1.1E+02 0.0024 27.2 7.0 71 86-163 227-302 (356)
323 PRK11892 pyruvate dehydrogenas 41.5 1.1E+02 0.0023 28.5 7.1 37 86-126 339-375 (464)
324 cd01480 vWA_collagen_alpha_1-V 41.1 97 0.0021 24.2 6.0 62 89-152 112-184 (186)
325 PF01451 LMWPc: Low molecular 40.2 1E+02 0.0023 22.7 5.8 35 86-120 27-61 (138)
326 PLN02897 tetrahydrofolate dehy 38.9 1.7E+02 0.0038 26.2 7.7 67 75-142 70-143 (345)
327 cd02127 PA_hPAP21_like PA_hPAP 38.4 53 0.0012 24.5 3.9 73 87-169 34-111 (118)
328 PF04244 DPRP: Deoxyribodipyri 38.2 2.3E+02 0.0051 23.5 8.1 88 77-166 51-141 (224)
329 PF00731 AIRC: AIR carboxylase 37.8 57 0.0012 25.7 4.1 47 89-138 2-51 (150)
330 PF08599 Nbs1_C: DNA damage re 37.5 27 0.00058 23.8 1.9 33 139-177 13-46 (65)
331 cd04816 PA_SaNapH_like PA_SaNa 37.2 60 0.0013 23.9 4.0 72 87-167 43-115 (122)
332 TIGR03140 AhpF alkyl hydropero 36.9 60 0.0013 29.9 4.7 47 73-125 2-57 (515)
333 PF01323 DSBA: DSBA-like thior 36.0 37 0.00079 26.2 2.8 32 89-125 1-37 (193)
334 PTZ00494 tuzin-like protein; P 34.4 94 0.002 29.7 5.5 57 88-152 395-452 (664)
335 KOG2949 Ketopantoate hydroxyme 34.1 1.2E+02 0.0026 26.1 5.7 72 102-178 115-199 (306)
336 PRK06852 aldolase; Validated 33.7 1.8E+02 0.0039 25.6 6.9 55 106-163 190-249 (304)
337 TIGR00853 pts-lac PTS system, 33.4 1.4E+02 0.003 21.3 5.3 82 66-158 8-90 (95)
338 PRK12571 1-deoxy-D-xylulose-5- 33.3 90 0.002 30.0 5.4 65 87-159 504-572 (641)
339 PRK09212 pyruvate dehydrogenas 33.1 90 0.002 27.3 5.0 36 87-126 201-236 (327)
340 KOG4022 Dihydropteridine reduc 33.0 1.4E+02 0.0031 24.6 5.7 77 87-169 3-99 (236)
341 PRK09590 celB cellobiose phosp 32.8 1.3E+02 0.0029 22.0 5.2 34 132-165 64-101 (104)
342 CHL00144 odpB pyruvate dehydro 32.2 1.2E+02 0.0025 26.7 5.6 37 86-126 200-236 (327)
343 PF14237 DUF4339: Domain of un 31.7 45 0.00098 20.3 2.1 24 147-170 4-29 (45)
344 COG1651 DsbG Protein-disulfide 31.6 77 0.0017 25.7 4.2 21 140-160 212-232 (244)
345 PRK13600 putative ribosomal pr 30.9 1.6E+02 0.0034 21.0 5.1 17 108-124 46-62 (84)
346 cd02125 PA_VSR PA_VSR: Proteas 30.5 1E+02 0.0022 23.2 4.3 71 87-167 42-120 (127)
347 COG3917 NahD 2-hydroxychromene 30.4 87 0.0019 25.9 4.1 56 108-163 134-196 (203)
348 PF00004 AAA: ATPase family as 30.4 1.2E+02 0.0026 21.3 4.6 58 90-152 1-67 (132)
349 cd05565 PTS_IIB_lactose PTS_II 30.2 1.2E+02 0.0026 22.1 4.5 77 66-155 5-84 (99)
350 TIGR00177 molyb_syn molybdenum 30.1 1.6E+02 0.0034 22.3 5.4 59 106-165 29-89 (144)
351 cd00886 MogA_MoaB MogA_MoaB fa 29.8 1.9E+02 0.0042 22.1 5.9 60 106-166 22-85 (152)
352 PTZ00110 helicase; Provisional 29.6 3.7E+02 0.008 25.1 8.8 65 77-147 366-431 (545)
353 smart00852 MoCF_biosynth Proba 29.6 1.3E+02 0.0028 22.2 4.8 59 106-165 20-80 (135)
354 COG1911 RPL30 Ribosomal protei 29.5 2.4E+02 0.0051 20.9 7.1 68 73-152 3-70 (100)
355 smart00226 LMWPc Low molecular 29.5 1.4E+02 0.0029 22.2 4.9 39 81-120 19-57 (140)
356 PRK15412 thiol:disulfide inter 29.4 2.3E+02 0.005 22.2 6.4 40 107-150 110-150 (185)
357 PF09413 DUF2007: Domain of un 29.2 28 0.00061 22.7 0.9 44 104-152 10-53 (67)
358 COG1154 Dxs Deoxyxylulose-5-ph 29.1 84 0.0018 30.4 4.3 66 87-159 501-570 (627)
359 PRK05899 transketolase; Review 28.9 1.4E+02 0.0029 28.5 5.8 83 87-177 510-610 (624)
360 COG0394 Wzb Protein-tyrosine-p 28.7 1.4E+02 0.0031 22.8 4.9 56 66-121 7-62 (139)
361 cd05564 PTS_IIB_chitobiose_lic 28.6 1.8E+02 0.0039 20.6 5.2 27 132-158 60-86 (96)
362 PF13344 Hydrolase_6: Haloacid 28.2 1.5E+02 0.0033 21.1 4.8 61 73-138 15-77 (101)
363 KOG4236 Serine/threonine prote 28.0 1.4E+02 0.0031 29.1 5.6 39 85-125 265-303 (888)
364 COG2239 MgtE Mg/Co/Ni transpor 27.7 1.8E+02 0.004 26.9 6.2 58 120-177 206-265 (451)
365 cd01859 MJ1464 MJ1464. This f 27.5 2.6E+02 0.0056 20.7 7.4 17 145-161 72-88 (156)
366 KOG3414 Component of the U4/U6 26.7 1.4E+02 0.0031 23.3 4.5 69 81-154 14-90 (142)
367 PLN02225 1-deoxy-D-xylulose-5- 26.6 91 0.002 30.6 4.2 66 86-159 566-635 (701)
368 cd03036 ArsC_like Arsenate Red 26.5 84 0.0018 22.8 3.2 31 129-159 78-108 (111)
369 KOG4700 Uncharacterized homolo 26.2 1.2E+02 0.0026 25.1 4.2 35 132-166 102-137 (207)
370 cd00758 MoCF_BD MoCF_BD: molyb 26.1 2.1E+02 0.0045 21.3 5.4 60 106-166 21-82 (133)
371 PHA02558 uvsW UvsW helicase; P 26.0 3.3E+02 0.0072 25.0 7.7 65 88-158 345-410 (501)
372 cd03082 TRX_Fd_NuoE_W_FDH_beta 25.8 90 0.002 21.1 3.0 27 141-167 44-72 (72)
373 cd01444 GlpE_ST GlpE sulfurtra 25.6 2E+02 0.0043 19.3 4.9 37 77-119 46-82 (96)
374 cd05013 SIS_RpiR RpiR-like pro 25.4 1.8E+02 0.0039 20.6 4.8 44 76-123 2-45 (139)
375 cd02123 PA_C_RZF_like PA_C-RZF 25.1 1.2E+02 0.0025 23.6 3.9 71 87-167 67-140 (153)
376 TIGR00635 ruvB Holliday juncti 24.8 3.3E+02 0.007 22.7 6.9 56 89-152 32-90 (305)
377 PF14424 Toxin-deaminase: The 24.6 1.7E+02 0.0037 22.4 4.7 25 88-116 97-121 (133)
378 PRK01889 GTPase RsgA; Reviewed 24.5 4.2E+02 0.0091 23.4 7.8 62 105-168 130-196 (356)
379 PTZ00182 3-methyl-2-oxobutanat 24.5 1.8E+02 0.0039 25.9 5.4 69 86-163 232-307 (355)
380 PF00282 Pyridoxal_deC: Pyrido 24.5 1.6E+02 0.0035 26.1 5.2 70 87-163 139-216 (373)
381 PRK05298 excinuclease ABC subu 24.2 3.1E+02 0.0067 26.4 7.3 48 76-129 434-482 (652)
382 COG5309 Exo-beta-1,3-glucanase 24.0 2.6E+02 0.0056 24.6 6.1 96 74-177 62-169 (305)
383 COG1651 DsbG Protein-disulfide 24.0 1E+02 0.0022 25.0 3.5 16 101-116 128-143 (244)
384 PRK15348 type III secretion sy 23.8 1.7E+02 0.0038 24.9 5.0 85 85-175 16-118 (249)
385 cd01473 vWA_CTRP CTRP for CS 23.7 3.7E+02 0.0081 21.3 7.9 59 90-150 112-174 (192)
386 COG0041 PurE Phosphoribosylcar 23.6 2.4E+02 0.0052 22.7 5.4 62 102-163 14-102 (162)
387 COG4150 CysP ABC-type sulfate 23.4 1.5E+02 0.0033 25.9 4.5 30 144-174 305-339 (341)
388 PF03691 UPF0167: Uncharacteri 23.3 1.2E+02 0.0026 24.6 3.8 70 102-176 51-136 (176)
389 cd00897 UGPase_euk Eukaryotic 23.0 3.8E+02 0.0081 23.4 7.0 21 155-175 115-135 (300)
390 TIGR03865 PQQ_CXXCW PQQ-depend 22.7 2.1E+02 0.0045 22.3 5.0 29 86-119 115-143 (162)
391 TIGR02667 moaB_proteo molybden 22.6 2.8E+02 0.0062 21.6 5.7 59 106-165 24-86 (163)
392 KOG2805 tRNA (5-methylaminomet 22.5 5.8E+02 0.013 23.1 8.0 87 65-151 8-105 (377)
393 TIGR00631 uvrb excinuclease AB 22.4 4.7E+02 0.01 25.4 8.1 48 76-129 430-478 (655)
394 COG1331 Highly conserved prote 22.3 4.3E+02 0.0094 25.9 7.8 70 79-154 34-122 (667)
395 PF13364 BetaGal_dom4_5: Beta- 22.3 71 0.0015 23.4 2.1 19 140-158 60-78 (111)
396 PLN02948 phosphoribosylaminoim 22.1 1.7E+02 0.0037 27.8 5.1 93 71-166 382-513 (577)
397 PRK13601 putative L7Ae-like ri 22.1 2.9E+02 0.0062 19.4 5.3 32 102-135 33-66 (82)
398 COG4566 TtrR Response regulato 21.8 4.7E+02 0.01 21.8 8.6 66 74-152 13-85 (202)
399 cd04333 ProX_deacylase This CD 21.7 1.7E+02 0.0037 22.0 4.2 21 107-127 2-22 (148)
400 cd04813 PA_1 PA_1: Protease-as 21.7 1.4E+02 0.003 22.2 3.6 59 87-151 39-99 (117)
401 TIGR00614 recQ_fam ATP-depende 21.6 6E+02 0.013 23.0 8.4 54 78-137 217-270 (470)
402 TIGR00734 hisAF_rel hisA/hisF 21.4 2.2E+02 0.0047 23.4 5.0 61 105-167 142-206 (221)
403 COG2761 FrnE Predicted dithiol 21.4 47 0.001 28.0 1.0 23 89-116 7-29 (225)
404 cd02130 PA_ScAPY_like PA_ScAPY 21.4 1.7E+02 0.0036 21.4 4.0 71 87-167 44-115 (122)
405 cd03025 DsbA_FrnE_like DsbA fa 21.3 64 0.0014 24.9 1.8 21 89-114 2-22 (193)
406 PF00994 MoCF_biosynth: Probab 21.3 1.1E+02 0.0025 22.9 3.1 61 105-166 18-80 (144)
407 PHA00689 hypothetical protein 21.2 34 0.00073 22.4 0.1 12 10-21 13-24 (62)
408 cd02978 KaiB_like KaiB-like fa 21.0 2.6E+02 0.0056 19.3 4.6 41 89-134 3-50 (72)
409 cd01524 RHOD_Pyr_redox Member 20.8 2.7E+02 0.0059 18.6 5.6 36 77-118 41-76 (90)
410 COG1105 FruK Fructose-1-phosph 20.8 5.9E+02 0.013 22.5 9.5 58 77-136 119-176 (310)
411 PRK10558 alpha-dehydro-beta-de 20.7 4.6E+02 0.0099 22.1 7.0 59 105-166 28-90 (256)
412 cd01474 vWA_ATR ATR (Anthrax T 20.7 4E+02 0.0087 20.5 7.4 51 90-142 107-157 (185)
413 PF04214 DUF411: Protein of un 20.5 3E+02 0.0065 19.0 5.1 46 122-167 4-52 (70)
414 TIGR03239 GarL 2-dehydro-3-deo 20.4 5.2E+02 0.011 21.7 7.5 60 105-167 21-84 (249)
415 PF09034 TRADD_N: TRADD, N-ter 20.4 1E+02 0.0022 23.2 2.6 33 144-176 18-52 (111)
416 PRK01297 ATP-dependent RNA hel 20.3 2.9E+02 0.0063 25.0 6.1 44 88-137 336-379 (475)
417 PF04072 LCM: Leucine carboxyl 20.1 1.8E+02 0.0038 22.8 4.1 53 77-135 65-120 (183)
No 1
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=1.3e-32 Score=207.80 Aligned_cols=104 Identities=40% Similarity=0.860 Sum_probs=100.6
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG 155 (179)
+..+++++++++++|+||+|++++.|+||||.+++++|+++|++|.++||+++++++++|++++||+|||||||||+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHcccHHHHHHhhhcC
Q 030327 156 GCDITVEAYKNGELQELLEKALCT 179 (179)
Q Consensus 156 G~del~~l~~~GeL~~~L~~a~~~ 179 (179)
|+|++.+++++|+|+++|+++|++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999874
No 2
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.7e-32 Score=197.67 Aligned_cols=103 Identities=56% Similarity=1.000 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (179)
Q Consensus 75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~ 153 (179)
.++.+++++.+++++|++|+|+||.+|.|+|+.++.++|..+| ++|.++||..|+++|+.|+++++|+|+||+||||++
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 3567889999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHcccHHHHHHhhh
Q 030327 154 FGGCDITVEAYKNGELQELLEKAL 177 (179)
Q Consensus 154 IGG~del~~l~~~GeL~~~L~~a~ 177 (179)
|||+|.+.+|+++|||+++|++++
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999874
No 3
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.96 E-value=4e-29 Score=183.04 Aligned_cols=96 Identities=58% Similarity=1.073 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec
Q 030327 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC 157 (179)
Q Consensus 78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~ 157 (179)
.+++++++++++|+||++++++.|+||||.+++++|+++|++|+++||+++++.+++|++++|++++|+|||||++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccHHHHH
Q 030327 158 DITVEAYKNGELQELL 173 (179)
Q Consensus 158 del~~l~~~GeL~~~L 173 (179)
|++.+++++|+|+++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999875
No 4
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.95 E-value=1.1e-27 Score=176.00 Aligned_cols=92 Identities=22% Similarity=0.434 Sum_probs=86.1
Q ss_pred HhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH---HHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327 82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM---LRQGLKEYSSWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 82 ~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~---~~~~L~~~sg~~tvP~VfIdG~~IGG~d 158 (179)
++++++++|+||++ ++||||.+++++|+++|++|+++||+++++ .++++.+++|+.++|+|||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 56889999999999 499999999999999999999999987744 6678888899999999999999999999
Q ss_pred HHHHHHHcccHHHHHHhhhc
Q 030327 159 ITVEAYKNGELQELLEKALC 178 (179)
Q Consensus 159 el~~l~~~GeL~~~L~~a~~ 178 (179)
++.+++++|+|+++|+++|+
T Consensus 77 dl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999999987
No 5
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.95 E-value=9.2e-28 Score=173.05 Aligned_cols=90 Identities=61% Similarity=1.076 Sum_probs=87.0
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHH
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del 160 (179)
+++++++++|+||++++++.|+||||.+++++|+++|++|+++||+.|++++++|.+.+|+.++|+|||||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccHH
Q 030327 161 VEAYKNGELQ 170 (179)
Q Consensus 161 ~~l~~~GeL~ 170 (179)
++++++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999985
No 6
>PHA03050 glutaredoxin; Provisional
Probab=99.95 E-value=4.3e-27 Score=175.77 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=91.3
Q ss_pred HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC---CeEEEEcCC---CHHHHHHHHHhcCCCCcceEeeCC
Q 030327 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILE---NEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv---~y~~vdV~~---d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
++++++++++++|+||+++ |||||.+++++|+++++ +|+.+||+. +.+++++|.+.+|+.|||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~~-----~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKF-----TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEECC-----CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 5779999999999999995 99999999999999999 799999986 678999999999999999999999
Q ss_pred EEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327 152 EFFGGCDITVEAYKNGELQELLEKALC 178 (179)
Q Consensus 152 ~~IGG~del~~l~~~GeL~~~L~~a~~ 178 (179)
++|||+|++.+++++|+|+++|+++|+
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 999999999999999999999999986
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.95 E-value=3.8e-27 Score=193.77 Aligned_cols=102 Identities=42% Similarity=0.852 Sum_probs=98.3
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~ 153 (179)
.+++.+++++++++++|+||+|++++.|+||||++++++|+++|++|.++||++|++++++|++++||+|+|||||||++
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHcccHHHHHHh
Q 030327 154 FGGCDITVEAYKNGELQELLEK 175 (179)
Q Consensus 154 IGG~del~~l~~~GeL~~~L~~ 175 (179)
|||+|++++++++|+|+++|.+
T Consensus 179 IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 179 IGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999964
No 8
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=190.16 Aligned_cols=101 Identities=51% Similarity=0.911 Sum_probs=98.4
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG 155 (179)
++++.++++++.++|+||+||+|.+|.|+|+++++.+|+++|++|..+||.+|+++|+.+++++.|+|+|||||||+++|
T Consensus 127 ~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 127 DLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred hHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHcccHHHHHHhh
Q 030327 156 GCDITVEAYKNGELQELLEKA 176 (179)
Q Consensus 156 G~del~~l~~~GeL~~~L~~a 176 (179)
|+|.+++|+++|+|+..|+++
T Consensus 207 GlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 207 GLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred CcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999875
No 9
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=161.35 Aligned_cols=97 Identities=29% Similarity=0.524 Sum_probs=90.8
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEE
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEF 153 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~ 153 (179)
..+++++++.+++||||+|+ +||||.+++.+|...++.+..+++|++ .+++++|.+++|.+|+|+|||+|++
T Consensus 3 ~~~~v~~~i~~~~VVifSKs-----~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKS-----SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred HHHHHHHHhhcCCEEEEECC-----cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 34579999999999999996 999999999999999999999998764 6899999999999999999999999
Q ss_pred EeecHHHHHHHHcccHHHHHHhhhc
Q 030327 154 FGGCDITVEAYKNGELQELLEKALC 178 (179)
Q Consensus 154 IGG~del~~l~~~GeL~~~L~~a~~ 178 (179)
|||+++++++|.+|+|.++|+.+|+
T Consensus 78 iGG~~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 78 IGGASDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred EcCHHHHHHHHHcCCHHHHHHHhhc
Confidence 9999999999999999999999986
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.89 E-value=7.9e-23 Score=144.58 Aligned_cols=82 Identities=28% Similarity=0.520 Sum_probs=78.4
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcc
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNG 167 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~G 167 (179)
.+|++|++ ++||||++++.+|+++|++|+++||+.+++.++++.+.+|..++|+||+||++|||+|++.+++++|
T Consensus 2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g 76 (83)
T PRK10638 2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG 76 (83)
T ss_pred CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence 37999999 4999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cHHHHHH
Q 030327 168 ELQELLE 174 (179)
Q Consensus 168 eL~~~L~ 174 (179)
+|+++|+
T Consensus 77 ~l~~~~~ 83 (83)
T PRK10638 77 GLDPLLK 83 (83)
T ss_pred CHHHHhC
Confidence 9999885
No 11
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.89 E-value=1.1e-22 Score=141.72 Aligned_cols=79 Identities=28% Similarity=0.529 Sum_probs=75.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcccH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGEL 169 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~GeL 169 (179)
|+||++ ++||+|.+++++|+++|++|+++||+.+++.++++.+.+|+.++|+|||||++|||++++.+++++|+|
T Consensus 1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 689999 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 030327 170 QELL 173 (179)
Q Consensus 170 ~~~L 173 (179)
+++|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 9875
No 12
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.86 E-value=1.8e-21 Score=152.88 Aligned_cols=88 Identities=23% Similarity=0.448 Sum_probs=80.4
Q ss_pred cEEEEEee-CCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHHHH
Q 030327 89 KVVLFMKG-TKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 89 ~Vvlysk~-t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~~l 163 (179)
+|+||+.+ .....+||+|++|+++|++++|+|+++||+.|++.+++|++++|. .++|||||||++|||+|++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 58999995 223337999999999999999999999999999999999998775 8999999999999999999999
Q ss_pred HHcccHHHHHHhh
Q 030327 164 YKNGELQELLEKA 176 (179)
Q Consensus 164 ~~~GeL~~~L~~a 176 (179)
+++|+|+++|+.+
T Consensus 81 ~e~G~L~~lL~~~ 93 (147)
T cd03031 81 NESGELRKLLKGI 93 (147)
T ss_pred HHcCCHHHHHhhc
Confidence 9999999999875
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.85 E-value=7.8e-21 Score=130.50 Aligned_cols=74 Identities=26% Similarity=0.508 Sum_probs=70.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCC-CcceEeeCCEEEeecHHHHHHHHcc
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP-TFPQLYIEGEFFGGCDITVEAYKNG 167 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~-tvP~VfIdG~~IGG~del~~l~~~G 167 (179)
+|+||++ ++||+|.+++++|+++|++|+++||+.+++.++++.+.+|+. ++|+||+||++|||++++++++++|
T Consensus 1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4899999 499999999999999999999999999999999999888887 9999999999999999999999987
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.84 E-value=1.9e-20 Score=129.10 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=69.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.+|+||++ ++||+|++|+++|+++|++|+.+||.++++.++++++++|..++|+||+||++|||+|++.+|++
T Consensus 1 ~~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 36999999 49999999999999999999999999999999999999999999999999999999999998853
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.83 E-value=2.7e-20 Score=129.62 Aligned_cols=79 Identities=35% Similarity=0.669 Sum_probs=72.3
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCC--eEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~--y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
|++|++ +|||+|++++++|++++++ |+.+||+.+ .+.++++.+.+|..++|+||+||++|||++++++++
T Consensus 1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 688999 5999999999999999998 888888653 567788999999999999999999999999999999
Q ss_pred HcccHHHHH
Q 030327 165 KNGELQELL 173 (179)
Q Consensus 165 ~~GeL~~~L 173 (179)
++|+|+++|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999999875
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=131.69 Aligned_cols=76 Identities=26% Similarity=0.538 Sum_probs=70.4
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH--HHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~--~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
.|+||++ ++||||.+++++|+++|++|+++|++.++ +.++.+++..|..|+|||||||++|||++++.++...
T Consensus 2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 5899999 59999999999999999999999998887 7778888877999999999999999999999999988
Q ss_pred ccH
Q 030327 167 GEL 169 (179)
Q Consensus 167 GeL 169 (179)
|.|
T Consensus 77 ~~l 79 (80)
T COG0695 77 GKL 79 (80)
T ss_pred ccC
Confidence 876
No 17
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.82 E-value=5.3e-20 Score=128.00 Aligned_cols=79 Identities=30% Similarity=0.556 Sum_probs=72.3
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+|++|++ ++||+|.+++++|++++++|+.+|++.+ .++++++++++|+.++|+||+||+++||+++++++.+
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 5899999 4999999999999999999999888654 5678889999999999999999999999999999999
Q ss_pred cccHHHH
Q 030327 166 NGELQEL 172 (179)
Q Consensus 166 ~GeL~~~ 172 (179)
+|+|+++
T Consensus 76 ~g~l~~~ 82 (82)
T cd03419 76 SGKLVKL 82 (82)
T ss_pred cCCccCC
Confidence 9999763
No 18
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.81 E-value=2.2e-19 Score=126.06 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=67.5
Q ss_pred hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
+-++++|+||++ ++||+|++++++|+++|++|+++||+.+++. +++++.+|+.++|+||+||++|||++++.++
T Consensus 4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 456889999999 5999999999999999999999999887664 4677788999999999999999999999886
Q ss_pred H
Q 030327 164 Y 164 (179)
Q Consensus 164 ~ 164 (179)
.
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 4
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.79 E-value=4.6e-19 Score=121.72 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=64.4
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
+|+||++. +||+|.+++++|+++|++|+++||+.+++ .++++..+|..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~-----~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP-----GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC-----CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999995 99999999999999999999999998874 467788889999999999999999999999874
No 20
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.78 E-value=6.5e-19 Score=128.31 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=74.7
Q ss_pred EEEEEeeC-CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHHHHH
Q 030327 90 VVLFMKGT-KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 90 Vvlysk~t-~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~~l~ 164 (179)
|+||+.+. ....-=..|.+++.+|+.++|+|+++||+.|++.++++.+.+|. .++|||||||+||||+|++.++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 67787762 22222347999999999999999999999999999999999864 99999999999999999999999
Q ss_pred HcccHHHHHH
Q 030327 165 KNGELQELLE 174 (179)
Q Consensus 165 ~~GeL~~~L~ 174 (179)
++|+|+++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999986
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.78 E-value=1.6e-18 Score=122.84 Aligned_cols=73 Identities=21% Similarity=0.411 Sum_probs=66.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITV 161 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~del~ 161 (179)
+|+||++ ++||+|++|+++|++ .+++|+++||+++...++++.+++|+ .++|+|||||++|||++++.
T Consensus 2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 6999999 599999999999999 79999999999887777888888876 89999999999999999999
Q ss_pred HHHHc
Q 030327 162 EAYKN 166 (179)
Q Consensus 162 ~l~~~ 166 (179)
++.++
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 98764
No 22
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.77 E-value=1.9e-18 Score=123.40 Aligned_cols=74 Identities=23% Similarity=0.451 Sum_probs=65.7
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITVE 162 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~del~~ 162 (179)
|+||++ ++||||.+|+++|++++ ++|+++|+..+...++++.+.+|+ .++|+|||||++|||+|++.+
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 789999 49999999999999984 679999998777667788888886 899999999999999999999
Q ss_pred HHHccc
Q 030327 163 AYKNGE 168 (179)
Q Consensus 163 l~~~Ge 168 (179)
+++++.
T Consensus 77 ~~~~~~ 82 (86)
T TIGR02183 77 LVKENF 82 (86)
T ss_pred HHHhcc
Confidence 987753
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.76 E-value=5.2e-18 Score=113.17 Aligned_cols=71 Identities=45% Similarity=0.809 Sum_probs=67.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
+|++|++. +||+|++++.+|++++++|+++|+..+++.++++.+++|..++|++|+||+++||++++++++
T Consensus 1 ~v~ly~~~-----~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKS-----TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECC-----CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 58999994 999999999999999999999999999999999999999999999999999999999999886
No 24
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.71 E-value=4.5e-17 Score=108.18 Aligned_cols=60 Identities=37% Similarity=0.705 Sum_probs=57.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
|++|++ ++||+|.+++++|+++|++|+++||+++++.++++++.+|..++|+|||||++|
T Consensus 1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999 599999999999999999999999999999999999999999999999999987
No 25
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.69 E-value=1.1e-16 Score=143.56 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=71.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH--------HhcCCCCcceEeeCCEEEeecHH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK--------EYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~--------~~sg~~tvP~VfIdG~~IGG~de 159 (179)
.+|+||++ ++||+|+++|++|+++|++|+++||+++++..+.+. ..+|..++|||||||++|||+|+
T Consensus 2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 46999999 499999999999999999999999998875444222 23689999999999999999999
Q ss_pred HHHHHHcccHHHHHHhh
Q 030327 160 TVEAYKNGELQELLEKA 176 (179)
Q Consensus 160 l~~l~~~GeL~~~L~~a 176 (179)
+.+ .+|+|.++|+..
T Consensus 77 l~~--~~g~l~~~~~~~ 91 (410)
T PRK12759 77 LMA--RAGEVIARVKGS 91 (410)
T ss_pred HHH--HhCCHHHHhcCC
Confidence 987 899999998754
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.62 E-value=4.3e-15 Score=105.38 Aligned_cols=69 Identities=13% Similarity=0.289 Sum_probs=62.4
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH--HHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD--ITVEA 163 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d--el~~l 163 (179)
+|+||++ ++||+|++++++|+++|++|+++||+++++..++++. .|..++|+|+++|+.++|++ ++.++
T Consensus 2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCHHHHHHH
Confidence 6899999 4999999999999999999999999999998888877 49999999999999999996 34444
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.61 E-value=2.6e-15 Score=103.30 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=58.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE-EEeecHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE-FFGGCDI 159 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~-~IGG~de 159 (179)
|+||++ ++||+|++++++|+++|++|+++||+++++.++++++. |..++|+|++||+ +|||++.
T Consensus 1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccCH
Confidence 579999 59999999999999999999999999999999998875 9999999999775 9999973
No 28
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.1e-13 Score=115.91 Aligned_cols=90 Identities=20% Similarity=0.388 Sum_probs=79.2
Q ss_pred CCcEEEEEee-CCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHH
Q 030327 87 GNKVVLFMKG-TKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITV 161 (179)
Q Consensus 87 ~~~Vvlysk~-t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~ 161 (179)
.+.||+|+.+ ..-......|..|+.+|++.+|.|.+.||..|...+++|+++.|. .++|+|||+|++|||.++++
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 4679999997 222334568999999999999999999999999999999988764 67999999999999999999
Q ss_pred HHHHcccHHHHHHhh
Q 030327 162 EAYKNGELQELLEKA 176 (179)
Q Consensus 162 ~l~~~GeL~~~L~~a 176 (179)
+|++.|+|.++|+..
T Consensus 210 ~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGI 224 (281)
T ss_pred hhhhcchHHHHHhcC
Confidence 999999999999864
No 29
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.45 E-value=8.6e-13 Score=88.32 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=60.5
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
.|++|+.. ||++|++++.+|++.+++|..+|++.+++..+++.+..|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~-----~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTP-----WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCC-----CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 37899994 9999999999999999999999999998888888888899999999999999999853
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.38 E-value=3.6e-12 Score=85.25 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=61.0
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
+|++|+.. ||++|.+++.+|++.+++|..+|++.+++..+++.+.++..++|+|+++|+.++|++.
T Consensus 1 ~v~l~~~~-----~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKP-----DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCC-----CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 47899994 9999999999999999999999999888888889888888999999999999999874
No 31
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.31 E-value=1.3e-11 Score=91.04 Aligned_cols=87 Identities=29% Similarity=0.411 Sum_probs=63.7
Q ss_pred cEEEEEeeCC-CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC---------CCCcceEeeCCEEEeecH
Q 030327 89 KVVLFMKGTK-DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS---------WPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 89 ~Vvlysk~t~-~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg---------~~tvP~VfIdG~~IGG~d 158 (179)
.|.||..+.. +..==..+.++..+|+.++|+|+.+||..|++.|+.+++..| .+-.||||+||+++|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 3667776520 000013578999999999999999999999999999998773 344589999999999999
Q ss_pred HHHHHHHcccHHHHHHh
Q 030327 159 ITVEAYKNGELQELLEK 175 (179)
Q Consensus 159 el~~l~~~GeL~~~L~~ 175 (179)
++.++.++|+|.+.|+-
T Consensus 82 ~f~ea~E~~~L~~fL~L 98 (99)
T PF04908_consen 82 DFEEANENGELEEFLKL 98 (99)
T ss_dssp HHHHHHCTT-HHHHHT-
T ss_pred HHHHHHhhCHHHHHhCc
Confidence 99999999999999864
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.26 E-value=5.6e-11 Score=80.92 Aligned_cols=65 Identities=22% Similarity=0.401 Sum_probs=56.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEee-CCEEEeecH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYI-EGEFFGGCD 158 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfI-dG~~IGG~d 158 (179)
+|++|+.. ||++|++++.+|++++++|+.+|+++++...+++.+++ |..++|+|++ ||+.+...+
T Consensus 1 ~v~ly~~~-----~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTT-----WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECC-----CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 47899995 99999999999999999999999999988888888886 8899999976 667766543
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.14 E-value=1.6e-10 Score=77.55 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=49.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG 155 (179)
.|++|++ +|||+|.+++++|+++ +++|..+|++++++ +.+..|..++|++++||++++
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 4889999 4999999999999876 68899999988765 344568889999999999886
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.00 E-value=4.1e-09 Score=73.04 Aligned_cols=72 Identities=15% Similarity=0.039 Sum_probs=61.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEeecHHHHHHHHc
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGGCDITVEAYKN 166 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG~del~~l~~~ 166 (179)
++||+. +.||+|.+++.+|+++|++|+.+++..++....++.+.++..++|++.. +|..+.+.+.+.++.++
T Consensus 2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 578888 4999999999999999999999999877666677888888899999977 36788888888887543
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.92 E-value=4.6e-09 Score=68.36 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
.+|.. ++||+|.+++.+|+..|++|+.++++.++....++++.++..++|.+..+|..+++...+.++.
T Consensus 2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 57777 4899999999999999999999998654332226777889999999999999999998877653
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.89 E-value=1.8e-08 Score=69.24 Aligned_cols=70 Identities=26% Similarity=0.492 Sum_probs=56.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC----CEEEeecHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE----GEFFGGCDITVEAY 164 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId----G~~IGG~del~~l~ 164 (179)
++.||+. +.||+|++++.+|.++|++|+.++++. ..+.+++ ..+..++|++.++ |+.+.....+.++.
T Consensus 1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 4789999 499999999999999999999999853 2233443 4688999999987 78888888888775
Q ss_pred Hc
Q 030327 165 KN 166 (179)
Q Consensus 165 ~~ 166 (179)
++
T Consensus 73 ~~ 74 (77)
T cd03040 73 KT 74 (77)
T ss_pred HH
Confidence 43
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.83 E-value=2.3e-08 Score=67.75 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=55.3
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~ 165 (179)
.+|.. ++||||.+++-+|..+|++|+.++++.++.. . ..+..+..++|+++++ |..+++...+.++.+
T Consensus 2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 46777 4999999999999999999999988754322 2 2345678899999997 899999999988764
No 38
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=1.5e-07 Score=67.76 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=55.4
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
..+.++++-+.-.|.+|.. +||++|..+.++++++ +++|..+|+++.++..+ .+|...+|.+++||
T Consensus 3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~----~~~V~~vPt~vidG 73 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE----ERGIMSVPAIFLNG 73 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH----HcCCccCCEEEECC
Confidence 4566777666668999988 5999999999988665 68899999987765433 45777899999999
Q ss_pred EEEe
Q 030327 152 EFFG 155 (179)
Q Consensus 152 ~~IG 155 (179)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8876
No 39
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.59 E-value=2.9e-07 Score=62.09 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=56.2
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
++|+. +.|++|++++.+|+..|++|+.++++... ...++++.....++|++..||..+.....+.++.+
T Consensus 2 ~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 2 TLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred EEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 67887 48999999999999999999998886432 22456667788899999989988888888877754
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.59 E-value=3.1e-07 Score=65.42 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAY 164 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~ 164 (179)
...+.+|+. +.||+|.+++-+|...|++|+.++++... ..+++.+.++..++|++.+| |..+.....+.++.
T Consensus 16 ~~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 355899998 48999999999999999999999886432 23456778888999999998 88888888887764
No 41
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.56 E-value=3.4e-07 Score=62.14 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=54.3
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEA 163 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l 163 (179)
++|+. ++||+|.+++.+|+++|++|+.++++... ..+++.+.++..++|.+..+ |..+.....+.++
T Consensus 2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 57777 49999999999999999999999886432 12566778889999999995 8888877777654
No 42
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.56 E-value=3.5e-07 Score=61.93 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=57.9
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.+|+. +.|++|++++-+|+++|++|+.++++ .++...+++.+.+...++|.+..+|..+.....+.++..
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 57877 59999999999999999999998886 344455778888888899999999988888877776643
No 43
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.55 E-value=2.7e-07 Score=63.46 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=59.0
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
||+. ++||||.+++-+|+.+|++|+.++++.... +..+.+.++..++|.+..||..+.+...+.++.++
T Consensus 1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 4666 599999999999999999999999864432 66778888999999999999999999988887543
No 44
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.54 E-value=8.9e-08 Score=71.40 Aligned_cols=46 Identities=15% Similarity=0.391 Sum_probs=39.0
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg 140 (179)
|+||+. ++|++|++++++|+++|++|+++|+.+++..+++|.++.+
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 579999 5999999999999999999999999888766666655443
No 45
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.50 E-value=7.7e-07 Score=61.08 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=43.1
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHh----cC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKS----LN--APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
.|++|+. +||++|+.++..|++ ++ +.+..+|++++++.. +..|..++|++++||+
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHcCCccCCEEEECCE
Confidence 4788998 599999999999865 34 567788887776543 3368889999999997
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.49 E-value=4.9e-07 Score=60.65 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~ 164 (179)
.+|+. ++|++|.+++-+|..+|++|+.++++. +.....++.+.++..++|.+.+ ||..+.....+.++.
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 57887 589999999999999999999888753 2233456778888899999997 667777777776653
No 47
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.46 E-value=1.7e-06 Score=60.83 Aligned_cols=53 Identities=30% Similarity=0.517 Sum_probs=43.1
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
+|++|++ ++|+.|..++++|.+.. +.++.+||++|++ |.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 4899999 69999999999999754 5689999998887 4445564 799999999
No 48
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.46 E-value=1e-06 Score=59.11 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=56.6
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
++|.. +.|++|.+++-+|...|++|+.++++. ++...+++.+.+...++|.+..+|..+.....+.++.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 57777 589999999999999999999998863 3344566777778889999999999988888777653
No 49
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.46 E-value=1.8e-07 Score=68.63 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=38.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg 140 (179)
|+||++ ++|++|++++++|++.|++|+++|+.+++..+++|.++.+
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 579999 5999999999999999999999999887665666666544
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.43 E-value=2.7e-06 Score=63.35 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=47.2
Q ss_pred HHHH-HHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 76 ELKS-TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 76 ~~~~-~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
++.+ ..+++.+...+++|... +||++|+.++++|++.. +.+..+|++++++ +.+.+|..++|.+++
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~~v~~vPt~~i 81 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKYGVERVPTTIF 81 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCC----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHcCCCcCCEEEE
Confidence 3344 33445555667777543 69999999999997653 5688889887764 445568889999977
No 51
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.42 E-value=1.5e-06 Score=74.97 Aligned_cols=85 Identities=27% Similarity=0.500 Sum_probs=66.7
Q ss_pred HhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 82 DKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 82 ~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
-.-++.. ++++|... .||||-+|+.+|+-+|++|..|+| |+-.|++++ ++..+.||.+.++|+.+-...-
T Consensus 81 ~~~ld~s~L~l~LyQye-----tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsv 152 (370)
T KOG3029|consen 81 ATRLDGSPLDLVLYQYE-----TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSV 152 (370)
T ss_pred HhhcCCCCceEEEEeec-----cCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHH
Confidence 3344444 79999994 899999999999999999999999 677778876 6789999999999998877776
Q ss_pred HHHHH------HcccHHHHHH
Q 030327 160 TVEAY------KNGELQELLE 174 (179)
Q Consensus 160 l~~l~------~~GeL~~~L~ 174 (179)
+..+. ....|.++.+
T Consensus 153 IIs~laTyLq~~~q~l~eiiq 173 (370)
T KOG3029|consen 153 IISLLATYLQDKRQDLGEIIQ 173 (370)
T ss_pred HHHHHHHHhccCCCCHHHHHH
Confidence 66654 3345555543
No 52
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.37 E-value=8.4e-07 Score=68.20 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=34.6
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG 134 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~ 134 (179)
|+||+. ++|++|++++++|+++|++|+++|+.+++..+++
T Consensus 2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~e 41 (131)
T PRK01655 2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDE 41 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHH
Confidence 789999 5999999999999999999999999876544333
No 53
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.30 E-value=3e-06 Score=58.83 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=41.5
Q ss_pred EEEEEeeCCCCCCCchHHHH----HHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 90 VVLFMKGTKDFPQCGFSHTV----VQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~a----k~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
|.+|+. |||.|+.+ .+++++++++++.++|++.++ ..+ .|..++|.+++||+.+
T Consensus 3 i~~~a~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYGT------GCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEECC------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cCCCcCCEEEECCEEE
Confidence 566653 99999999 557788899999999974333 222 4889999999999766
No 54
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.26 E-value=6.8e-06 Score=55.70 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
..||+|.+++.+|+.+|++|+.++++... .+...++|++..+|+.+.++..+.++.++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 38999999999999999999999986532 45677899999999999999988887653
No 55
>PHA02125 thioredoxin-like protein
Probab=98.25 E-value=5.1e-06 Score=57.33 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=39.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG 155 (179)
|++|+. +||++|+.++.+|++..+.+..+|.+++. ++.+..+...+|++. +|+.++
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCceeCeEE-CCEEEE
Confidence 678888 59999999999998765444444444444 445556778999976 776554
No 56
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.24 E-value=2.5e-06 Score=63.91 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~ 138 (179)
|.||+. ++|++|++|+++|++.|++|+.+|+.+++.-+++|.++
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l 44 (117)
T TIGR01617 1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDI 44 (117)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHH
Confidence 468998 59999999999999999999999998887766666544
No 57
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.23 E-value=7.9e-06 Score=61.89 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCH--------HHHHHHHHhcC----CC
Q 030327 80 TLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENE--------MLRQGLKEYSS----WP 142 (179)
Q Consensus 80 ~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~--------~~~~~L~~~sg----~~ 142 (179)
.+++.++++ .+++|... +|||+|+.+...|.+. ++++.++|++.+. ++. ++.+..+ ..
T Consensus 15 ~~~~~i~~~~~~iv~f~~----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~-~~~~~~~i~~~i~ 89 (122)
T TIGR01295 15 RALEALDKKETATFFIGR----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLT-AFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHcCCcEEEEEEC----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHH-HHHHHcCCcccCC
Confidence 355555554 44554443 6999999988877554 6789999998543 222 3333333 34
Q ss_pred CcceE--eeCCEEEeec
Q 030327 143 TFPQL--YIEGEFFGGC 157 (179)
Q Consensus 143 tvP~V--fIdG~~IGG~ 157 (179)
.+|.+ |.||+.++..
T Consensus 90 ~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVR 106 (122)
T ss_pred CCCEEEEEeCCeEEEEE
Confidence 48887 6799887655
No 58
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.23 E-value=1.2e-05 Score=58.43 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=61.1
Q ss_pred CcEEEEEeeC---CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 88 NKVVLFMKGT---KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 88 ~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
..+.+|.|.. +....|+||++++-.|.++|++|+.++|+.+.. -+.+.+++-...+|.+..+|..+...+.+.++.
T Consensus 4 p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 4577888763 224679999999999999999999998864321 145677777789999999999999888888875
Q ss_pred Hc
Q 030327 165 KN 166 (179)
Q Consensus 165 ~~ 166 (179)
++
T Consensus 83 de 84 (91)
T cd03061 83 EE 84 (91)
T ss_pred HH
Confidence 43
No 59
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.22 E-value=2.9e-06 Score=63.44 Aligned_cols=44 Identities=27% Similarity=0.544 Sum_probs=36.7
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~ 138 (179)
|.||+. ++|++|++++++|++.|++|+.+|+.+++.-+++|.++
T Consensus 2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~ 45 (115)
T cd03032 2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEI 45 (115)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHH
Confidence 679999 59999999999999999999999998775544444443
No 60
>PHA02278 thioredoxin-like protein
Probab=98.19 E-value=1.4e-05 Score=59.01 Aligned_cols=67 Identities=16% Similarity=0.345 Sum_probs=46.7
Q ss_pred hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG 155 (179)
-+...|+|+... +||+.|+.+...|++. .+++..+|++.++.....+.+..+-.++|++ |-||+.++
T Consensus 12 ~~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 12 RQKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred hCCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence 346677777776 8999999999888554 2458888998763223335555566677776 67998764
No 61
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.11 E-value=4.8e-06 Score=64.11 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d 128 (179)
|+||+. ++|+.|++++++|++.|++|+++|+..+
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 789999 6999999999999999999999999765
No 62
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.10 E-value=2.5e-05 Score=53.10 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=58.8
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
+.+|.. +.|++|.+++-+|...|++|+.++++.. +...+.+.+.+...++|.+..+|..+.....+.++.++
T Consensus 2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 567887 5899999999999999999999887642 23345677788889999999999999888888887643
No 63
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.08 E-value=2.5e-05 Score=53.07 Aligned_cols=69 Identities=20% Similarity=0.073 Sum_probs=53.4
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEeeCCEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS-WPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.+|.. +.|++|.+++-+|...|++|+.++++.. ....++++... ..++|.+..+|..+.+...+.++.+
T Consensus 2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 46766 4899999999999999999999887543 11234555555 4799999999988888888877654
No 64
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.05 E-value=6.6e-06 Score=63.41 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=31.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d 128 (179)
|+||+. ++|+.|++++++|+++|++|+++|+..+
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 789999 5999999999999999999999999754
No 65
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.05 E-value=2.1e-05 Score=54.07 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=56.5
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
++|.. +.|++|.+++-+|.++|++|+.++++.. +....++.+.+...++|.+..||..+.....+.++.
T Consensus 2 ~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 56777 4899999999999999999999887542 233456888888999999999999888888877664
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.03 E-value=2.1e-05 Score=56.68 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHH------Hh-c--CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL------KS-L--NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL------~~-~--gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
+++++++++ |+|+... +||++|++....+ .+ + ++.+..+|++++......+.+..+..++|.+++
T Consensus 4 ~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 4 LAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 455555655 4444444 6999999987544 11 1 466777788776555566666678899998743
No 67
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.01 E-value=6.2e-05 Score=55.50 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=47.3
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDIT 160 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del 160 (179)
..|+|+... |||+.|+.+...|+++ ++.|-.+|++++ .+.+..+-..+|.+ |.||+.++...-.
T Consensus 25 ~~vvv~F~a----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 25 TRVVVHFYE----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CEEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecH
Confidence 456665554 7999999999888653 456777777544 44555577788877 7799988766555
Q ss_pred HHH
Q 030327 161 VEA 163 (179)
Q Consensus 161 ~~l 163 (179)
..+
T Consensus 96 ~~~ 98 (113)
T cd02957 96 EEL 98 (113)
T ss_pred HHh
Confidence 554
No 68
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.8e-05 Score=62.46 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=48.8
Q ss_pred HHHHHHhhhcCC-c-EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE-
Q 030327 77 LKSTLDKVVTGN-K-VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL- 147 (179)
Q Consensus 77 ~~~~l~~li~~~-~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V- 147 (179)
..++-++++++. + +|-|.. +||+.|+.+..+|+++ .+++..+|+|++.++.+. ++-..+|.+
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y~I~avPtvl 120 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----YEISAVPTVL 120 (150)
T ss_pred HHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----cceeeeeEEE
Confidence 344445555553 3 455555 6999999999999876 356788899888876544 455678887
Q ss_pred -eeCCEEE
Q 030327 148 -YIEGEFF 154 (179)
Q Consensus 148 -fIdG~~I 154 (179)
|.||+.+
T Consensus 121 vfknGe~~ 128 (150)
T KOG0910|consen 121 VFKNGEKV 128 (150)
T ss_pred EEECCEEe
Confidence 7799766
No 69
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.00 E-value=7.2e-06 Score=60.77 Aligned_cols=36 Identities=8% Similarity=0.224 Sum_probs=32.3
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~ 130 (179)
|++|+. |+|+.|++++++|++.|++|+++|+.+++.
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCC
Confidence 578999 699999999999999999999999987643
No 70
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.99 E-value=7.2e-05 Score=51.02 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+++|.. +.|+.|.+++-+|...|++|+.+.++. +...++++..+...++|.+..||..+.+...+.++..
T Consensus 2 ~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 567777 379999999999999999999998864 2334466777778899999999999999888887754
No 71
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.95 E-value=6.5e-05 Score=50.72 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=54.8
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
++|.. +.|+.|.+++-+|...|++|+.++++........+...+...++|.+..+|..+.....+.++.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 56666 4899999999999999999999988643222233566677889999999999998888887764
No 72
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.94 E-value=4.3e-05 Score=56.86 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=47.0
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCD 158 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~d 158 (179)
+...|+++... +||+.|+.+...|.++ ++.+..+|+++++++.+. .+-..+|.+ |-+|+.++-..
T Consensus 21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~----~~v~~vPt~l~fk~G~~v~~~~ 92 (113)
T cd02989 21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEK----LNIKVLPTVILFKNGKTVDRIV 92 (113)
T ss_pred CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHH----CCCccCCEEEEEECCEEEEEEE
Confidence 34567777665 7999999999888663 577888999888765544 355567766 77998776443
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.92 E-value=7.1e-05 Score=56.55 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=43.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG 155 (179)
..|+|+... +||+.|+.+..+|+++ + +.|-.+|+++++++.+. .|-..+|.+ |-||+.++
T Consensus 15 ~~vVV~F~A----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~----~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 15 KVVVIRFGR----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKM----YELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred CEEEEEEEC----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHH----cCCCCCCEEEEEECCEEEE
Confidence 345554443 6999999999988654 2 46788999988865443 456677776 77998875
No 74
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.92 E-value=8e-05 Score=51.00 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=53.0
Q ss_pred EEEEEeeCC--CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 90 VVLFMKGTK--DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 90 Vvlysk~t~--~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
++||..... -...||+|.+++.+|...|++|+.++++. +..+...++|.+..||+.+.+...+.++.++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 456666310 01258999999999999999999988753 2456788999999999999999888876543
No 75
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.90 E-value=1.7e-05 Score=59.65 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=32.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
.|+||+. |.|..|++++++|+++|++|+++|+.+++
T Consensus 1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 3789999 69999999999999999999999997653
No 76
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=1.9e-05 Score=58.31 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=65.7
Q ss_pred cEEEEEeeCCCCCC-CchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHH--------HHhcCCCCcceEeeCCEEEeecHH
Q 030327 89 KVVLFMKGTKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGL--------KEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 89 ~Vvlysk~t~~~p~-Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L--------~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
.|.+|.++.+-.+. =-.=.++..+|+...+.|..+||..+++.+++. +-..|.+.-||||-++++.|++|.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 46677765211000 001236777899999999999998776665544 334688999999999999999999
Q ss_pred HHHHHHcccHHHHHHhh
Q 030327 160 TVEAYKNGELQELLEKA 176 (179)
Q Consensus 160 l~~l~~~GeL~~~L~~a 176 (179)
+.+..+++-|++.|+-+
T Consensus 83 F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 99999999999999754
No 77
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.88 E-value=8.4e-05 Score=51.43 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 101 PQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 101 p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
++|++|..+.+++ .+.+++++.+|+ .+. +++ ..+|-.++|.++|||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-SSSSEEEETTEEE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCCCCCEEEECCEEE
Confidence 3799999777755 556888988888 332 223 345889999999999854
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.87 E-value=5.2e-05 Score=62.20 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQ 146 (179)
Q Consensus 72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~ 146 (179)
.++++..+.++.+-+.-.|++|+. +||++|..++.+++++ .+.+..+|++.++++.+ ..|..++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~----~~~V~~vPt 189 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE----KYGVMSVPK 189 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH----HhCCccCCE
Confidence 455666666666444445666777 5999999999999775 36677788887766544 457778999
Q ss_pred EeeCCE
Q 030327 147 LYIEGE 152 (179)
Q Consensus 147 VfIdG~ 152 (179)
++++++
T Consensus 190 l~i~~~ 195 (215)
T TIGR02187 190 IVINKG 195 (215)
T ss_pred EEEecC
Confidence 988753
No 79
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.87 E-value=6.5e-05 Score=50.31 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=54.5
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
++|.. +.|++|.+++.+|..+|++|+.++++. +.....++.+.+...++|++..+|..+.....+.++.
T Consensus 2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 46655 479999999999999999999887753 2233456677778889999999999888888777664
No 80
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.85 E-value=6.2e-05 Score=50.87 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=52.4
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHh--cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY 164 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~--~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~ 164 (179)
.+|.. +.|++|.+++-+|.. .|++|+.++++.. ....++.+.....++|.+.. ||..+.....+.++.
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 46666 489999999999999 8999999988642 11234556778889999985 788888887777654
No 81
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.81 E-value=0.00024 Score=50.67 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=43.0
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC 157 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~ 157 (179)
..|+++..+ +||+.|+.+...|++ -++.+..+|+++++++.+ ..+...+|.+ |-||+.++..
T Consensus 14 ~~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~----~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 14 RLILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAE----AAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred CeEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHH----HCCCeeccEEEEEECCeEEEEE
Confidence 345555554 699999999998866 246678888888776544 3456788877 4488776433
No 82
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.81 E-value=0.00013 Score=51.35 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=43.2
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG 156 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG 156 (179)
...++|+... +||+.|+.++..|.+. ++.|..+|.+++.++ .+..+...+|.+ |-+|+.+..
T Consensus 17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~g~~~~~ 86 (103)
T PF00085_consen 17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKEL----CKKYGVKSVPTIIFFKNGKEVKR 86 (103)
T ss_dssp SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHH----HHHTTCSSSSEEEEEETTEEEEE
T ss_pred CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccchh----hhccCCCCCCEEEEEECCcEEEE
Confidence 4566666665 7999999999888543 366778888766443 344467778887 558876653
No 83
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.80 E-value=5.5e-05 Score=69.59 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=59.7
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP 145 (179)
..++++..+.++++-+.-.|.+|.. +.||||..+++.+++. +|..+.+|..+.+++.+ .++..++|
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~----~~~v~~VP 171 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE----ARNIMAVP 171 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH----hcCCcccC
Confidence 4567788888888888888999999 6999999999999776 35566666655555444 44777999
Q ss_pred eEeeCCEEEee
Q 030327 146 QLYIEGEFFGG 156 (179)
Q Consensus 146 ~VfIdG~~IGG 156 (179)
.+|+||+.+..
T Consensus 172 ~~~i~~~~~~~ 182 (517)
T PRK15317 172 TVFLNGEEFGQ 182 (517)
T ss_pred EEEECCcEEEe
Confidence 99999987653
No 84
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.80 E-value=8e-05 Score=60.62 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=53.7
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327 92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~ 166 (179)
+|.. ..||+|.+++-+|..+|++|+.+++..++.. .. .+.++..++|++. .||..+++...+.++.++
T Consensus 2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TP-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcch-hH-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 5665 3799999999999999999999988654322 22 4556778999997 788899999988887654
No 85
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.80 E-value=0.00023 Score=51.63 Aligned_cols=64 Identities=27% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG 155 (179)
...|+|+... +||+.|+.....|+++ ++.|..+|++++++.. .+.+..+...+|++ |.||+.++
T Consensus 15 ~k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 15 GRLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred CCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHHcCCCcCCEEEEEeCCeEEE
Confidence 3456666655 6999999998888653 4668888888775443 34444577778866 55887664
No 86
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.79 E-value=0.00016 Score=49.90 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeC---CEEEeecHHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIE---GEFFGGCDITVEAY 164 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfId---G~~IGG~del~~l~ 164 (179)
+.+|.. +. ++|.+++-+|...|++|+.+.++ .+....+++.+.+...++|.+..+ |..+.....+.++.
T Consensus 2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 567876 34 99999999999999999988775 333445667778888899999887 78888888877765
Q ss_pred H
Q 030327 165 K 165 (179)
Q Consensus 165 ~ 165 (179)
.
T Consensus 76 ~ 76 (81)
T cd03048 76 A 76 (81)
T ss_pred H
Confidence 4
No 87
>PRK10387 glutaredoxin 2; Provisional
Probab=97.78 E-value=0.00011 Score=58.81 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=54.2
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE-eeCCEEEeecHHHHHHHHc
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL-YIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-fIdG~~IGG~del~~l~~~ 166 (179)
.+|+. +.||+|.+++-+|+.+|++|+.++++..+.. .. .+..+..++|++ ..||..+.+...+.++.++
T Consensus 2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 57877 3899999999999999999999998644322 22 345677899999 5688899999888887654
No 88
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.77 E-value=9.1e-05 Score=51.64 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHHc
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYKN 166 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~~ 166 (179)
++|++|.+++-+|...|++|+.++++.. .....++ +..+..++|.+..| |..+.+...+.++.++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 5899999999999999999998877532 2333444 56678899999888 8999998888887543
No 89
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.74 E-value=8.2e-05 Score=68.45 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP 145 (179)
..++++..++++++-..-.|.+|.. +.||||..+++.++++. |..+.+|..+.+++ .+.++..+||
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~v~~VP 172 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALGIQGVP 172 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcCCcccC
Confidence 4567788888888877888999999 59999999999998764 44555555444443 3445777999
Q ss_pred eEeeCCEEEee
Q 030327 146 QLYIEGEFFGG 156 (179)
Q Consensus 146 ~VfIdG~~IGG 156 (179)
++|+||+.++.
T Consensus 173 ~~~i~~~~~~~ 183 (515)
T TIGR03140 173 AVFLNGEEFHN 183 (515)
T ss_pred EEEECCcEEEe
Confidence 99999987754
No 90
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.71 E-value=0.00042 Score=46.74 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=43.2
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG 155 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG 155 (179)
..++|+..+ +||++|..+.+.|++ .++.+..+|++.+.++.+. .+...+|.+++ +|+.++
T Consensus 11 ~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 11 KPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred CcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cCcccccEEEEEECCEEEE
Confidence 444444443 699999999999987 6788899999876665443 35667888755 887544
No 91
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.70 E-value=0.00013 Score=44.76 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=42.6
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHH-----hcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILK-----SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~-----~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
++|... +|++|.++...++ ..++.+..+|++......+.. ...+...+|.+++.+
T Consensus 2 ~~~~~~-----~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYAP-----WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYGVGGVPTLVVFG 61 (69)
T ss_pred EEEECC-----CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCCCccccEEEEEe
Confidence 456663 9999999999999 567889999998877665542 335778899998766
No 92
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.67 E-value=7.4e-05 Score=50.79 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCC---CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILE---NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN 166 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~---d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~ 166 (179)
.||||.++.-+|..+|++|+...+.. +.....++.++++..++|.+.. +|+.++....+.++.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 49999999999999999998766622 2222356788889999999998 89999999998887654
No 93
>PRK09381 trxA thioredoxin; Provisional
Probab=97.65 E-value=0.00034 Score=50.65 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC 157 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~ 157 (179)
...++|+... +||+.|+.+...|+++ ++.+..+|++.++.+. ...+..++|.+ |-+|+.++.+
T Consensus 21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH----HhCCCCcCCEEEEEeCCeEEEEe
Confidence 4445555554 6999999998877642 3567788887776553 33477789987 4488877544
No 94
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.64 E-value=0.00076 Score=47.05 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=42.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEee
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGG 156 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG 156 (179)
.|+||... +||++|+.+...|++. ++.+-.+|.+.++++. +..|...+|.+++ +|+.+..
T Consensus 16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA----AKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHcCCCcCCEEEEEeCCcEeee
Confidence 56666665 7999999998877553 3667788887776543 3457788998855 7765543
No 95
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.62 E-value=0.00039 Score=47.35 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=55.2
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.+|.. +.+++|+++.-+|...|++|+.+.++. .+...+++.+.....++|.+..+|..+.....+.++..
T Consensus 2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 46776 489999999999999999999888753 22233467777788999999989988888877777654
No 96
>PTZ00051 thioredoxin; Provisional
Probab=97.61 E-value=0.00036 Score=49.27 Aligned_cols=70 Identities=13% Similarity=0.285 Sum_probs=44.4
Q ss_pred HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG 151 (179)
Q Consensus 80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG 151 (179)
.++++++.++ ++++... +||+.|+.+...|.+. ++.|..+|++++..+.+ ..+...+|.+ |-+|
T Consensus 10 ~~~~~~~~~~~vli~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYA----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAE----KENITSMPTFKVFKNG 81 (98)
T ss_pred HHHHHHhcCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHH----HCCCceeeEEEEEeCC
Confidence 3445555544 4444444 6999999998888663 46677778766554433 3355667765 5588
Q ss_pred EEEeec
Q 030327 152 EFFGGC 157 (179)
Q Consensus 152 ~~IGG~ 157 (179)
+.++.+
T Consensus 82 ~~~~~~ 87 (98)
T PTZ00051 82 SVVDTL 87 (98)
T ss_pred eEEEEE
Confidence 766543
No 97
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.60 E-value=0.00049 Score=55.24 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=50.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDITV 161 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del~ 161 (179)
.|+|+... +||+.|+.+...|.++ ++.|..||++.. .+....+-..+|.+ |.||+.++..--+.
T Consensus 85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~~ 155 (175)
T cd02987 85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEechH
Confidence 57776665 7999999888877554 356777777643 45555677788866 77999886443222
Q ss_pred HH----HHcccHHHHHHhh
Q 030327 162 EA----YKNGELQELLEKA 176 (179)
Q Consensus 162 ~l----~~~GeL~~~L~~a 176 (179)
++ .....|+.+|...
T Consensus 156 ~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 156 EDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred HhcCCCCCHHHHHHHHHhc
Confidence 22 2234555555543
No 98
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00016 Score=62.84 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL-- 147 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-- 147 (179)
..+..+-+-....+|+++... |||+.|+.....|.+. ++.+..+|+|.++.+...+ |-.++|.|
T Consensus 32 nfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqf----giqsIPtV~a 103 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF----GVQSIPTVYA 103 (304)
T ss_pred HHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHh----CcCcCCeEEE
Confidence 445555556666678887776 8999999999999765 3567888999888875554 66689988
Q ss_pred eeCCEEEeec
Q 030327 148 YIEGEFFGGC 157 (179)
Q Consensus 148 fIdG~~IGG~ 157 (179)
|+||+.|-||
T Consensus 104 f~dGqpVdgF 113 (304)
T COG3118 104 FKDGQPVDGF 113 (304)
T ss_pred eeCCcCcccc
Confidence 8899999876
No 99
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.58 E-value=0.00019 Score=66.71 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP 145 (179)
..++++..++++++-..-.|.+|.. ++||+|.++.+.+++. +|..+.+|+.+.+++.+ .++..++|
T Consensus 461 ~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~----~~~v~~vP 531 (555)
T TIGR03143 461 QPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKD----EYGIMSVP 531 (555)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHH----hCCceecC
Confidence 4557777888887767778999887 5999999988876543 68899999977765443 45777999
Q ss_pred eEeeCCEEE
Q 030327 146 QLYIEGEFF 154 (179)
Q Consensus 146 ~VfIdG~~I 154 (179)
.++|||+.+
T Consensus 532 ~~~i~~~~~ 540 (555)
T TIGR03143 532 AIVVDDQQV 540 (555)
T ss_pred EEEECCEEE
Confidence 999999643
No 100
>PRK10996 thioredoxin 2; Provisional
Probab=97.56 E-value=0.00033 Score=53.87 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=42.8
Q ss_pred HHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327 81 LDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG 151 (179)
Q Consensus 81 l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG 151 (179)
++++++. ..|+|+... +||++|+.....|.+. ++.+..+|+++++++.+ ..+..++|.+ |-+|
T Consensus 45 ~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~----~~~V~~~Ptlii~~~G 116 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSA----RFRIRSIPTIMIFKNG 116 (139)
T ss_pred HHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHH----hcCCCccCEEEEEECC
Confidence 4444443 445555554 7999999988777553 34566777777766543 3456677766 5588
Q ss_pred EEEe
Q 030327 152 EFFG 155 (179)
Q Consensus 152 ~~IG 155 (179)
+.+.
T Consensus 117 ~~v~ 120 (139)
T PRK10996 117 QVVD 120 (139)
T ss_pred EEEE
Confidence 8664
No 101
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00012 Score=55.46 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=35.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK 136 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~ 136 (179)
-|++|.. |.|.-|++|++||+++|++|+++|+.+++.-+++|+
T Consensus 2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~ 44 (117)
T COG1393 2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELK 44 (117)
T ss_pred eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHH
Confidence 3789999 699999999999999999999999987644444333
No 102
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.54 E-value=0.00048 Score=49.10 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=42.3
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CC
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG 151 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG 151 (179)
++++++...++.|.. +||++|+.....+++. ++.+..+|+++++.+. ...+..++|.+++ +|
T Consensus 11 f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 11 WTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLS----GRFFVTALPTIYHAKDG 81 (101)
T ss_pred HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHH----HHcCCcccCEEEEeCCC
Confidence 445566665555555 6999999998887543 3567788887776543 3346667887754 66
Q ss_pred E
Q 030327 152 E 152 (179)
Q Consensus 152 ~ 152 (179)
+
T Consensus 82 ~ 82 (101)
T cd02994 82 V 82 (101)
T ss_pred C
Confidence 4
No 103
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.53 E-value=0.00037 Score=52.75 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
+..+.+.+. ....|||-... .||+.|+.+-.+|.++ + +.+-.+|+++.+++.+.+.- ..-|++ ++|.
T Consensus 4 ~~d~~i~~~-~~klVVVdF~a----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I-~amPtf-vffk 76 (114)
T cd02986 4 EVDQAIKST-AEKVLVLRFGR----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI-SYIPST-IFFF 76 (114)
T ss_pred HHHHHHHhc-CCCEEEEEEeC----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc-eeCcEE-EEEE
Confidence 334444433 33444444443 5999999999999776 3 55888999988887666442 223444 2688
Q ss_pred CCEEE
Q 030327 150 EGEFF 154 (179)
Q Consensus 150 dG~~I 154 (179)
||+|+
T Consensus 77 ngkh~ 81 (114)
T cd02986 77 NGQHM 81 (114)
T ss_pred CCcEE
Confidence 99998
No 104
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.51 E-value=0.00063 Score=57.27 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=60.8
Q ss_pred cEEEEEeeC---CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 89 KVVLFMKGT---KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 89 ~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.|.+|.|.. ...+.||+|++++-.|..+|++|+.++|+-... .+++.++.-..++|++..+|..+.....+.++.+
T Consensus 2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 356676652 234689999999999999999999988864321 3567778778899999999999999988888766
Q ss_pred c
Q 030327 166 N 166 (179)
Q Consensus 166 ~ 166 (179)
+
T Consensus 81 e 81 (236)
T TIGR00862 81 E 81 (236)
T ss_pred H
Confidence 4
No 105
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.49 E-value=0.00054 Score=46.74 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=54.1
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH-HHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327 92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK 165 (179)
Q Consensus 92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~-~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~ 165 (179)
+|+. +.|++|.+++-+|...|++|+.++++... ...+++++.+...++|.+..+ |..+.....+.++..
T Consensus 3 Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 3 LYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred EecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 5655 58999999999999999999999886432 233567777888999999984 888877777776653
No 106
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.48 E-value=0.00056 Score=56.07 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=43.8
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF 153 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~ 153 (179)
++.+.+.-.|++|.. ++++||++|+.+..+|++. ++++..++++.+. ...+.+..|-..+|.+.+ ||+.
T Consensus 14 ~~~~~~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 14 LKELKNPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred HHhcCCCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCccCEEEEEeCCee
Confidence 333444445666666 4557999999999999765 2445677776332 123444456778888744 6554
Q ss_pred E
Q 030327 154 F 154 (179)
Q Consensus 154 I 154 (179)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 4
No 107
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.47 E-value=0.00033 Score=52.07 Aligned_cols=69 Identities=12% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHH-------hc--CCCeEEEEcCCCHHH---------HHHHHHh
Q 030327 79 STLDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILK-------SL--NAPFETVNILENEML---------RQGLKEY 138 (179)
Q Consensus 79 ~~l~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~-------~~--gv~y~~vdV~~d~~~---------~~~L~~~ 138 (179)
+.++++.+++ +|+|+... +||++|++....+. .+ ++.+..+|++++... ...+...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3455566666 45555554 79999999876542 11 345566777655321 2455566
Q ss_pred cCCCCcceE-eeCC
Q 030327 139 SSWPTFPQL-YIEG 151 (179)
Q Consensus 139 sg~~tvP~V-fIdG 151 (179)
.+...+|.+ |+++
T Consensus 80 ~~v~~~Pt~~~~~~ 93 (125)
T cd02951 80 YRVRFTPTVIFLDP 93 (125)
T ss_pred cCCccccEEEEEcC
Confidence 678899996 5553
No 108
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00048 Score=48.68 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=44.8
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHH-----------hcCCCCcceEeeC-CEEEee
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKE-----------YSSWPTFPQLYIE-GEFFGG 156 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~-----------~sg~~tvP~VfId-G~~IGG 156 (179)
++|+.. -||.|..+++.|++++++|++|||.+. +.+++.|.- -.|+-.+|.+.++ |+.|-|
T Consensus 5 ~lfgsn-----~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN-----LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc-----cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 677774 899999999999999999999999754 233332221 1378889999775 555555
No 109
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.44 E-value=0.00063 Score=55.11 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=57.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
.+.+|+. +.|++|.+++-+|.+.|++|+.+.|+-. ...+++.+++-..++|.+..||..+-....+.++..
T Consensus 10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~ 80 (211)
T PRK09481 10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80 (211)
T ss_pred eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHH
Confidence 4789998 4899999999999999999999988643 223467777778899999999988888777776543
No 110
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.43 E-value=8.9e-05 Score=56.90 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=48.9
Q ss_pred CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
.+++..+.++.+-+...+++++.+ |||+|.....+|.+. ++++..+..+++.++.+.+.. .|...+|.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~-----WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~ 101 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITET-----WCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTF 101 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--T-----T-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECC-----CchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEE
Confidence 456677788888888899999994 999999988877554 677888877777776665555 588999998
Q ss_pred ee---CCEEEeec
Q 030327 148 YI---EGEFFGGC 157 (179)
Q Consensus 148 fI---dG~~IGG~ 157 (179)
++ +|+.+|-+
T Consensus 102 I~~d~~~~~lg~w 114 (129)
T PF14595_consen 102 IFLDKDGKELGRW 114 (129)
T ss_dssp EEE-TT--EEEEE
T ss_pred EEEcCCCCEeEEE
Confidence 55 35655543
No 111
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.43 E-value=0.0027 Score=45.86 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc----C---CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeC
Q 030327 81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----N---APFETVNILENEMLRQGLKEYSSWPTFPQL--YIE 150 (179)
Q Consensus 81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g---v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fId 150 (179)
++++++++ .|+|+... +||+.|+.....|.+. + +.+..+|++ +++ +.+..+...+|.+ |-|
T Consensus 10 ~~~~i~~~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 10 WEELLSNKGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHccCCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCCcCcEEEEEEC
Confidence 44444444 45555554 7999999998888543 2 345566666 333 3344467778855 668
Q ss_pred CEEE
Q 030327 151 GEFF 154 (179)
Q Consensus 151 G~~I 154 (179)
|+.+
T Consensus 81 g~~~ 84 (102)
T cd02948 81 GELV 84 (102)
T ss_pred CEEE
Confidence 8754
No 112
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.43 E-value=0.0012 Score=48.50 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=42.0
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG 155 (179)
....++|+... +||+.|+.....+.+. ++.+..+|++.++.+. ...|..++|.+ |.+|+.++
T Consensus 23 ~~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~----~~~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 23 FKKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLA----RKLGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred CCCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHH----HHcCCccCCEEEEEECCEEEE
Confidence 34556666665 7999999887766332 4667788887766543 33467788877 56887664
No 113
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.43 E-value=0.0009 Score=45.24 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=53.8
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
.+|.. +.+++|.+++-+|.+.|++|+.++++.. +...+.+.+.+...++|.+..+|..+.....+.++
T Consensus 2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 46666 4899999999999999999998887532 23345677777888999999999888877776665
No 114
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.41 E-value=0.00025 Score=54.33 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.7
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d 128 (179)
.+++|.. |.|.-|++++++|+++|++|+++|+.++
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 4789999 6999999999999999999999998654
No 115
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.38 E-value=0.0011 Score=52.34 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=43.3
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhc--CCCCcceE--eeCCEEEeec
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYS--SWPTFPQL--YIEGEFFGGC 157 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~s--g~~tvP~V--fIdG~~IGG~ 157 (179)
.++|+... +||+.|+.+...|++. ++.+-.+|+++++++.+.+.-.+ |..++|++ |.||+.++..
T Consensus 49 ~vvV~Fya----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 49 TWLVEFFT----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred EEEEEEEC----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence 34444443 6999999998877443 36678899998887766654321 12336655 7899888543
No 116
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0012 Score=49.15 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=45.6
Q ss_pred HHHHHHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327 77 LKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQL--Y 148 (179)
Q Consensus 77 ~~~~l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f 148 (179)
........-.. ..||++..+ +||+.|+.+...+.++- +.|-.+|++++. .+....+-..+|.+ +
T Consensus 10 ~~~~~~~~~~~~kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~----~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 10 LDLVLSAAEAGDKLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE----EVAKEFNVKAMPTFVFY 81 (106)
T ss_pred HHHHHHHhhCCCCeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEecccCH----hHHHhcCceEeeEEEEE
Confidence 34444444444 446666665 69999999999997763 446778887733 33333466678877 5
Q ss_pred eCCEEEe
Q 030327 149 IEGEFFG 155 (179)
Q Consensus 149 IdG~~IG 155 (179)
.||+.++
T Consensus 82 k~g~~~~ 88 (106)
T KOG0907|consen 82 KGGEEVD 88 (106)
T ss_pred ECCEEEE
Confidence 5775543
No 117
>PRK10853 putative reductase; Provisional
Probab=97.35 E-value=0.00028 Score=53.42 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
|++|.. |.|.-|++|+++|+++|++|+++|+.+++
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 678999 69999999999999999999999987653
No 118
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.35 E-value=0.0014 Score=45.99 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=38.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG 155 (179)
..|+|+... +||+.|+++...|++. ++.+..+|.++.+++ .+..+...+|.+ |.+|+.++
T Consensus 15 ~~v~v~f~~----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 15 KLLVLHFWA----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcCCccccEEEEEECCEEEE
Confidence 345444444 6999999999988653 344555666555443 344466678865 66887653
No 119
>PRK10026 arsenate reductase; Provisional
Probab=97.30 E-value=0.00042 Score=54.19 Aligned_cols=37 Identities=16% Similarity=0.508 Sum_probs=33.2
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
..|.||.. |.|.-|+++++||+++|++|+++|+.+++
T Consensus 2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 35889999 69999999999999999999999997653
No 120
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.30 E-value=0.00035 Score=52.07 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=30.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d 128 (179)
|++|.. |.|.-|++++++|++.|++|+++|+.++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 468888 5999999999999999999999999665
No 121
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.29 E-value=0.00082 Score=48.43 Aligned_cols=63 Identities=10% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------N--APFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
.++.++++.+...++|+... +||++|++....|++. + +.+..+|++.++++ .+..+-.++|.+
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~I~~~Pt~ 76 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFGVRGYPTI 76 (104)
T ss_pred chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcCCccccEE
Confidence 34455566666677777665 7999999888777442 2 44556676665544 344567788988
No 122
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.29 E-value=0.00037 Score=52.19 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=31.5
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
|++|.. |.|.-|++++++|++.|++|+++|+.+++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 468998 69999999999999999999999997653
No 123
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.28 E-value=0.0018 Score=48.75 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=43.7
Q ss_pred CCcEEEEEeeCCCCCC--CchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327 87 GNKVVLFMKGTKDFPQ--CGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG 156 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~--Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG 156 (179)
...+|++... +| ||.|+.+..+|++. + +.+..+|+++++++ ....+-.++|++ |-||+.++.
T Consensus 27 ~~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~l----a~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 27 GGDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQAL----AARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHH----HHHcCCCcCCEEEEEECCEEEEE
Confidence 3555555554 45 99999999998665 2 34668888887744 444566677776 779998875
Q ss_pred c
Q 030327 157 C 157 (179)
Q Consensus 157 ~ 157 (179)
.
T Consensus 99 ~ 99 (111)
T cd02965 99 L 99 (111)
T ss_pred E
Confidence 5
No 124
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.28 E-value=0.0013 Score=46.44 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=41.8
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--ee
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YI 149 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fI 149 (179)
+++.+..+.++|+... +||+.|+.....|++. ++.+..+|.+.++.+ .+..+...+|.+ |-
T Consensus 10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQVRGYPTLLLFK 81 (102)
T ss_pred HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcCCCcCCEEEEEe
Confidence 4455555566666655 7999999887777443 245666777666544 333466788876 44
Q ss_pred CCEEE
Q 030327 150 EGEFF 154 (179)
Q Consensus 150 dG~~I 154 (179)
+|+.+
T Consensus 82 ~g~~~ 86 (102)
T cd03005 82 DGEKV 86 (102)
T ss_pred CCCee
Confidence 77544
No 125
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.26 E-value=0.0018 Score=46.88 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=41.9
Q ss_pred HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc------------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------------NAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
++++++.++ ++|+... +||++|+.....+++. .+.+-.+|.+.+++ +.+..|..++|.+
T Consensus 11 f~~~i~~~~~vlv~F~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl 82 (108)
T cd02996 11 IDDILQSAELVLVNFYA----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTL 82 (108)
T ss_pred HHHHHhcCCEEEEEEEC----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEE
Confidence 444455544 4444443 7999999999888532 25567788877754 3444577888987
Q ss_pred --eeCCE
Q 030327 148 --YIEGE 152 (179)
Q Consensus 148 --fIdG~ 152 (179)
|-+|+
T Consensus 83 ~~~~~g~ 89 (108)
T cd02996 83 KLFRNGM 89 (108)
T ss_pred EEEeCCc
Confidence 55776
No 126
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.25 E-value=0.0019 Score=46.10 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=42.0
Q ss_pred HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327 81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG 151 (179)
Q Consensus 81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG 151 (179)
+++.+...+ ++|+... +||++|+.+...+++. .+.+..+|+++++.+ .+..+-..+|.+ |-+|
T Consensus 11 f~~~v~~~~~~~v~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 11 FDAAVNSGEIWFVNFYS----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred HHHHhcCCCeEEEEEEC----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHcCCCccCEEEEEcCC
Confidence 334444433 5555544 7999999998888554 245677888877654 333466778887 5577
Q ss_pred EEE
Q 030327 152 EFF 154 (179)
Q Consensus 152 ~~I 154 (179)
+.+
T Consensus 83 ~~~ 85 (101)
T cd03003 83 MNP 85 (101)
T ss_pred CCc
Confidence 543
No 127
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.24 E-value=0.0025 Score=45.51 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=36.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG 151 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG 151 (179)
.++|+... +||+.|+.+...+++. ++.+..+|.++++++. +..|...+|.+ |.+|
T Consensus 21 ~v~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYA----PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLC----QQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHH----HHcCCCcccEEEEEcCC
Confidence 45554443 6999999988877543 3567788887766543 33467778877 4466
No 128
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.24 E-value=0.002 Score=43.94 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
..|++|.+++-+|...|++|+.++++-. .+...++++.+...++|.+..+|..+.....+.++.
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 5799999999999999999998887532 223456777778899999999999888888777653
No 129
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.21 E-value=0.0015 Score=48.96 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHhcC------CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEE
Q 030327 101 PQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEF 153 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~g------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~ 153 (179)
|||++|+.+...+++.. +.+-.+|++.+.++. .+..+..++|.+ |.+|+.
T Consensus 39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~I~~~PTl~lf~~g~~ 96 (113)
T cd03006 39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKHFFYFPVIHLYYRSRG 96 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcCCcccCEEEEEECCcc
Confidence 79999999998886652 456788887776542 122344556655 777763
No 130
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.21 E-value=0.0018 Score=43.98 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=52.0
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~ 165 (179)
.+|.. +.| .|.+++-+|.+.|++|+.++++.. +....++.+.+...++|.+..+ |..+.....+.++.+
T Consensus 2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 46665 344 488899999999999998877542 2334667778889999999887 788888877777653
No 131
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.21 E-value=0.0019 Score=43.44 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=50.0
Q ss_pred chHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 104 GFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 104 p~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+.|.+++-+|...|++|+.+.++.. .....++.+.....++|.+..||..+.....+.++.+
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5688999999999999998887642 2334566677788899999999999999888888754
No 132
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.20 E-value=0.0013 Score=46.22 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCCEEEe
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFFG 155 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG~~IG 155 (179)
..|+|+... +||+.|+.+...|.+. ++.+..+|++.+.++.+ ..+...+|.++ -+|+.+.
T Consensus 13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ----QFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHH----HcCCCCCCEEEEEeCCEEee
Confidence 356666665 7999999998888653 23456777777665444 34666788874 5776553
No 133
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.17 E-value=0.0019 Score=49.94 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-e--C
Q 030327 81 LDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY-I--E 150 (179)
Q Consensus 81 l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-I--d 150 (179)
+++++.. ..|+|+... +||++|+.....|.++ ++.|..+|++.+. . ..+.+..+...+|.++ + +
T Consensus 13 ~~~a~~~gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 13 PEVALSNGKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred HHHHHhCCCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCCCCCEEEEECCC
Confidence 3344444 446666665 7999999998888653 2457777776542 1 2334445788899874 4 5
Q ss_pred CEEEe
Q 030327 151 GEFFG 155 (179)
Q Consensus 151 G~~IG 155 (179)
|+.++
T Consensus 87 G~~v~ 91 (142)
T cd02950 87 GNEEG 91 (142)
T ss_pred CCEEE
Confidence 76553
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.14 E-value=0.0016 Score=48.82 Aligned_cols=73 Identities=16% Similarity=0.372 Sum_probs=44.7
Q ss_pred HHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCCHH-HHHHHHHhcCCCCcceE-
Q 030327 77 LKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEM-LRQGLKEYSSWPTFPQL- 147 (179)
Q Consensus 77 ~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d~~-~~~~L~~~sg~~tvP~V- 147 (179)
.++.++....+++ |+|+... +||++|+.....+.+ .+..|..+|++.+++ ..+.+... | ..+|.+
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~-g-~~vPt~~ 81 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD-G-GYIPRIL 81 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC-C-CccceEE
Confidence 4566666665554 5555544 699999999888866 345688889987643 22222211 1 238877
Q ss_pred ee--CCEEEe
Q 030327 148 YI--EGEFFG 155 (179)
Q Consensus 148 fI--dG~~IG 155 (179)
|+ +|+.++
T Consensus 82 f~~~~Gk~~~ 91 (117)
T cd02959 82 FLDPSGDVHP 91 (117)
T ss_pred EECCCCCCch
Confidence 44 566544
No 135
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.14 E-value=0.0025 Score=46.02 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=36.8
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH----------------HHHHHHHhcCCC
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM----------------LRQGLKEYSSWP 142 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~----------------~~~~L~~~sg~~ 142 (179)
.+++++..+ ||||+|+++.+.+.+. ++.+..++++.+.. ...++....|..
T Consensus 6 k~~v~~F~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 6 KPIVVVFTD----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CEEEEEEEC----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 344444444 7999999987766531 23345556654332 124566666889
Q ss_pred CcceEee-C--CE---EEeecH
Q 030327 143 TFPQLYI-E--GE---FFGGCD 158 (179)
Q Consensus 143 tvP~VfI-d--G~---~IGG~d 158 (179)
.+|.+++ | |+ .+-|+-
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS-
T ss_pred ccCEEEEEcCCCCEEEEecCCC
Confidence 9999855 4 66 444553
No 136
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.13 E-value=0.0016 Score=49.46 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=46.3
Q ss_pred HHHHhhhcCC--cEEEEEeeCCCCCCCch--HH----------HHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327 79 STLDKVVTGN--KVVLFMKGTKDFPQCGF--SH----------TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF 144 (179)
Q Consensus 79 ~~l~~li~~~--~Vvlysk~t~~~p~Cp~--C~----------~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tv 144 (179)
+..++.+.++ .|++|... +||+. |+ .+.++|++.++.+..+|+++++++.+. .|-..+
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~----~~I~~i 88 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKK----LGLDEE 88 (120)
T ss_pred hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHH----cCCccc
Confidence 3355555554 46777775 58866 97 233455566899999999998776554 355566
Q ss_pred ceE--eeCCEEEe
Q 030327 145 PQL--YIEGEFFG 155 (179)
Q Consensus 145 P~V--fIdG~~IG 155 (179)
|++ |.||+.+.
T Consensus 89 PTl~lfk~G~~v~ 101 (120)
T cd03065 89 DSIYVFKDDEVIE 101 (120)
T ss_pred cEEEEEECCEEEE
Confidence 666 88998764
No 137
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.13 E-value=0.002 Score=50.43 Aligned_cols=51 Identities=16% Similarity=0.026 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHhcC------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 101 PQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~g------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
+||+.|+.+-.+|++.- +.+..+|||+++++.+.+.-. +.+++=.+|-||+
T Consensus 33 ~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~~~t~~~ffk~g~ 89 (142)
T PLN00410 33 DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-DPCTVMFFFRNKH 89 (142)
T ss_pred CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-CCCcEEEEEECCe
Confidence 59999999999987752 346789999999887765533 2222212455776
No 138
>PRK15113 glutathione S-transferase; Provisional
Probab=97.10 E-value=0.0031 Score=51.11 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
..+++|+.. .+.|++|.++.-+|.++|++|+.+.++- .+...+++.+++-...||++..||..|-....+.++.+
T Consensus 4 ~~~~Ly~~~---~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDA---HFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCC---CCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 457888862 0259999999999999999999888753 33344677778888899999999988877777766543
No 139
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.09 E-value=0.0028 Score=48.27 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=44.1
Q ss_pred HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHH-HH------HhcC--CCeEEEEcCCCHHHHHHHH----HhcCCCCcc
Q 030327 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQ-IL------KSLN--APFETVNILENEMLRQGLK----EYSSWPTFP 145 (179)
Q Consensus 80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~-lL------~~~g--v~y~~vdV~~d~~~~~~L~----~~sg~~tvP 145 (179)
.++++.++++ |+|+..+ .||++|+++.+ .+ +.++ +-+..+|+++++++.+.+. ...|...+|
T Consensus 7 al~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 7 AFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 3555555555 7776654 69999998864 33 2223 3344556666666655333 245777788
Q ss_pred eEee---CCEEEee
Q 030327 146 QLYI---EGEFFGG 156 (179)
Q Consensus 146 ~VfI---dG~~IGG 156 (179)
.+.+ +|+.+.+
T Consensus 83 t~vfl~~~G~~~~~ 96 (124)
T cd02955 83 LNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEECCCCCEEee
Confidence 7744 6888843
No 140
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.04 E-value=0.0044 Score=52.84 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
.||+|.++.-+|.++|++|+.+.|+-.. ..+++.+++-..++|.+..||..+.....+.++.++
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e 135 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 7999999999999999999987775432 123456677788999999999888888877776543
No 141
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.03 E-value=0.0043 Score=43.80 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=34.2
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
++|+... +||++|+.....|.+. .+.+..+|+++++++.+ ..|...+|.+
T Consensus 21 vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~ 76 (103)
T cd03001 21 WLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQ----QYGVRGFPTI 76 (103)
T ss_pred EEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHH----HCCCCccCEE
Confidence 5555554 6999999998877553 35577777776665433 3466789977
No 142
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.99 E-value=0.0047 Score=45.03 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327 101 PQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
+||++|+++...|.+. ++.+-.+|++.+. .+...+..+...+|.++
T Consensus 31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence 6999999999888553 3456666766521 12233345777899773
No 143
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.96 E-value=0.0055 Score=44.35 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEe
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
...|+|+... +||++|+.....|++. ++.+-.+|.+ .+++ +.+..+...+|.++
T Consensus 18 g~~vlV~F~a----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~ 77 (100)
T cd02999 18 EDYTAVLFYA----SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTIL 77 (100)
T ss_pred CCEEEEEEEC----CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEE
Confidence 3445555554 7999999999888664 4556666665 4443 34445677888763
No 144
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.92 E-value=0.0079 Score=41.30 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=37.9
Q ss_pred HHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHh----c----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 80 TLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKS----L----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 80 ~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
.+.+.+.+. .++|+..+ +||++|+.+...+.+ . ++.+..+|.+.+. .+.+..+...+|.+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYA----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEEC----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence 344555554 45544444 699999999888854 2 2345555555433 3444457788998843
No 145
>PLN02378 glutathione S-transferase DHAR1
Probab=96.92 E-value=0.0035 Score=50.99 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
..||||.++.-+|.++|++|+.+.|+-.. -.+++.+.+...++|.+..||..+.....+.++.++
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 57999999999999999999887775421 123566778889999999999888877777776543
No 146
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0046 Score=52.10 Aligned_cols=73 Identities=23% Similarity=0.125 Sum_probs=59.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
+.|.||+.- -|||..++.-.|+..||+|++++++-.. --+.|.+.. -...+|++..||+.|+-.-.+.++.++
T Consensus 8 ~~vrL~~~w-----~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMW-----FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEee-----cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 669999995 7999999999999999999999986432 224555555 577899999999999888777777554
No 147
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.88 E-value=0.0075 Score=49.17 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHHHHhhhcCC---cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327 78 KSTLDKVVTGN---KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL-- 147 (179)
Q Consensus 78 ~~~l~~li~~~---~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-- 147 (179)
..+.+.+.... .|+|+... +||+.|+.+...|+++ .+.|..+|++.. ....+-..+|.+
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTlli 158 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYK----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTILV 158 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEEC----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEEE
Confidence 34444444432 46665554 6999999998888665 356777777421 234577788887
Q ss_pred eeCCEEEeecHHHHHH----HHcccHHHHHHhhh
Q 030327 148 YIEGEFFGGCDITVEA----YKNGELQELLEKAL 177 (179)
Q Consensus 148 fIdG~~IGG~del~~l----~~~GeL~~~L~~a~ 177 (179)
|.||+.++-.--+..+ ....+|+.+|...|
T Consensus 159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred EECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 6699876543322222 12245555555443
No 148
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.87 E-value=0.0035 Score=47.58 Aligned_cols=56 Identities=7% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHHh----c--CCCeEEEEcCCCHHH---HHHHHHhcCCC-CcceE--eeCCEEEee
Q 030327 101 PQCGFSHTVVQILKS----L--NAPFETVNILENEML---RQGLKEYSSWP-TFPQL--YIEGEFFGG 156 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~----~--gv~y~~vdV~~d~~~---~~~L~~~sg~~-tvP~V--fIdG~~IGG 156 (179)
+||+.|+.+..+|++ . ++.|..+|+++++.. ...+....+-. .+|.+ |-+|+.+-|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 499999988776644 3 367888888764321 13344434444 78877 435544443
No 149
>PTZ00062 glutaredoxin; Provisional
Probab=96.80 E-value=0.006 Score=50.44 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHHhhhc--CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC---CeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327 79 STLDKVVT--GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG 151 (179)
Q Consensus 79 ~~l~~li~--~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv---~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG 151 (179)
+.+.++++ ...+++|... +||+.|+.+..+|.++-- .+..+.|+.+ .+-..+|.+ |-||
T Consensus 7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECC
Confidence 44566666 4667777765 799999999999977632 2444444433 466677755 6688
Q ss_pred EEEeec
Q 030327 152 EFFGGC 157 (179)
Q Consensus 152 ~~IGG~ 157 (179)
+.|+..
T Consensus 73 ~~i~r~ 78 (204)
T PTZ00062 73 QLINSL 78 (204)
T ss_pred EEEeee
Confidence 888643
No 150
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.79 E-value=0.0087 Score=50.08 Aligned_cols=65 Identities=14% Similarity=0.314 Sum_probs=42.5
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcC------------------CCHH--H--------------
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNIL------------------ENEM--L-------------- 131 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~------------------~d~~--~-------------- 131 (179)
.|++|+. |.||||+++-+.|.++ ++.+.++... .|+. +
T Consensus 110 ~I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 110 VITVFTD-----ITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 3677777 7999999998888775 4555444321 0110 0
Q ss_pred ------HHHHHHhcCCCCcceEee-CCEEEeecH
Q 030327 132 ------RQGLKEYSSWPTFPQLYI-EGEFFGGCD 158 (179)
Q Consensus 132 ------~~~L~~~sg~~tvP~VfI-dG~~IGG~d 158 (179)
..++.+..|....|.+++ ||+.+.|+.
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~ 218 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIVLSNGTLVPGYQ 218 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEEEcCCeEeeCCC
Confidence 122333347788999988 999999974
No 151
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.75 E-value=0.0034 Score=46.32 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK 136 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~ 136 (179)
+.|.-|++|+++|++.|++|+++|+..++--+++|.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~ 39 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELR 39 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHH
Confidence 589999999999999999999999987644444433
No 152
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.67 E-value=0.014 Score=40.80 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=32.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
+++|.. +||+.|+.....|.+. ++.+..+|.+.+.++ .+..+...+|.+++
T Consensus 17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL----ASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH----HHhCCCCcCCEEEE
Confidence 444555 6999999877766442 245666666665444 34457788998833
No 153
>PLN02473 glutathione S-transferase
Probab=96.63 E-value=0.0093 Score=47.95 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=55.6
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+.||.. +.+++|.+++-+|.++|++|+.+.++-. +....++.+.+...++|.+..||..|.....+.++.+
T Consensus 3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 467776 4799999999999999999998876432 2334455566778899999999999998888877653
No 154
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.63 E-value=0.0094 Score=42.64 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=35.5
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE 152 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~ 152 (179)
++|+... +||++|++....+.+. .+.+..+|++.++ ...+....+...+|.+++ +|.
T Consensus 21 ~lv~f~a----~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYA----PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEEC----CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEEEeCCC
Confidence 5555554 6999999988777554 2446666776521 123444457778898744 553
No 155
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.62 E-value=0.011 Score=46.45 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=59.1
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec---HHHHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC---DITVE 162 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~---del~~ 162 (179)
....+++|-. |+|+-|+.-.+.|+..|+++..++.++-..+++.+.-.....+.=+..|||.+|-|. +++.+
T Consensus 24 ~~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 24 QATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIAR 98 (149)
T ss_pred ceeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHH
Confidence 3445666666 899999999999999999998888766566666544333344566789999999997 67888
Q ss_pred HHHccc
Q 030327 163 AYKNGE 168 (179)
Q Consensus 163 l~~~Ge 168 (179)
+.+++.
T Consensus 99 ll~~~p 104 (149)
T COG3019 99 LLAEKP 104 (149)
T ss_pred HHhCCC
Confidence 877665
No 156
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.58 E-value=0.0078 Score=49.93 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCC-------HHHHHHHHHhcC
Q 030327 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILEN-------EMLRQGLKEYSS 140 (179)
Q Consensus 72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d-------~~~~~~L~~~sg 140 (179)
....+.+..++++.+...+++|..+ .|++|+....+| +++|+++..|++|.. ......+.+..|
T Consensus 106 ~~~~~~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~ 180 (215)
T PF13728_consen 106 QREQKRDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG 180 (215)
T ss_pred HHHHHHHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC
Confidence 3445667788889999999999997 999999888777 556899989998732 111234444557
Q ss_pred CCCcceEee
Q 030327 141 WPTFPQLYI 149 (179)
Q Consensus 141 ~~tvP~VfI 149 (179)
-..+|.+|+
T Consensus 181 v~~~Pal~L 189 (215)
T PF13728_consen 181 VKVTPALFL 189 (215)
T ss_pred CCcCCEEEE
Confidence 789999976
No 157
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.50 E-value=0.0092 Score=51.11 Aligned_cols=66 Identities=15% Similarity=0.348 Sum_probs=43.2
Q ss_pred HHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHH----hcCCCeEEEEcCCCHH-------HHHHHHHhcCCCCcceE
Q 030327 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNILENEM-------LRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~----~~gv~y~~vdV~~d~~-------~~~~L~~~sg~~tvP~V 147 (179)
..++++.....++.|.. +||++|+....+|+ ++|+.+..|+++.+.. ....+.+..|-..+|.+
T Consensus 159 ~~l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl 233 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV 233 (271)
T ss_pred HHHHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence 44555555555555666 49999998888774 4577777788875321 01234455688899999
Q ss_pred ee
Q 030327 148 YI 149 (179)
Q Consensus 148 fI 149 (179)
|+
T Consensus 234 ~L 235 (271)
T TIGR02740 234 FL 235 (271)
T ss_pred EE
Confidence 55
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.32 E-value=0.018 Score=42.65 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHHhcC---------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 81 LDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLN---------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 81 l~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g---------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
+++.+.++ .|+|+..+ +||+.|+.....+++.. +.+..+|.+.+. ...+.+..+...+|++++
T Consensus 11 f~~~i~~~~~~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 11 FNSALLGSPSAWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred HHHHHhcCCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 44444443 45555554 79999999888875532 334444543221 234444557788898744
No 159
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.29 E-value=0.013 Score=41.19 Aligned_cols=50 Identities=22% Similarity=0.461 Sum_probs=31.2
Q ss_pred CCCchHHHHHHHHHhc--------CCCeEEEEcCC--CHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327 101 PQCGFSHTVVQILKSL--------NAPFETVNILE--NEMLRQGLKEYSSWPTFPQL--YIEGEFF 154 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~V--fIdG~~I 154 (179)
+||++|+.+...+.+. .+.+..+|++. ++. +....|...+|.+ |-+|+.+
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA----LKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH----HHHhCCCccccEEEEEeCCCee
Confidence 6999999887666332 23455667665 333 3344466778877 5566644
No 160
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.27 E-value=0.029 Score=46.98 Aligned_cols=59 Identities=12% Similarity=0.267 Sum_probs=39.0
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF 154 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I 154 (179)
..++|+... +||++|+.....+++. + +.+..+|+++++++ .+..+...+|.+ |.+|+.+
T Consensus 53 ~~vlV~FyA----pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l----~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 53 GPWFVKFYA----PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNL----AKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCEEEEEEC----CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH----HHHcCCCcCCEEEEEECCEEE
Confidence 345555544 7999999998888654 2 44566677666543 444566778876 5588766
No 161
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.25 E-value=0.011 Score=47.26 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHhcCCCeEEEEcCC--C-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 101 PQCGFSHTVVQILKSLNAPFETVNILE--N-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+.|++|.+++-+|.++|++|+.+.++- . .....++.+.+...++|.+..||..+.....+.++..
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 379999999999999999999887763 1 2223456777788899999999998888887777554
No 162
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.19 E-value=0.026 Score=53.15 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=48.7
Q ss_pred CHHHHHHHHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHH-------Hh-cCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327 74 TPELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQIL-------KS-LNAPFETVNILENEMLRQGLKEYSSWPTF 144 (179)
Q Consensus 74 ~~~~~~~l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~-~gv~y~~vdV~~d~~~~~~L~~~sg~~tv 144 (179)
.++.++.+++..++ .+|+|+... +||+.|+...+.. ++ .++.+..+|++++++..+++.+..|...+
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 35666777665554 456665554 6999999876542 22 24567778887664444555556688889
Q ss_pred ceEee---CCEE
Q 030327 145 PQLYI---EGEF 153 (179)
Q Consensus 145 P~VfI---dG~~ 153 (179)
|.+++ ||+.
T Consensus 536 Pt~~~~~~~G~~ 547 (571)
T PRK00293 536 PTILFFDAQGQE 547 (571)
T ss_pred CEEEEECCCCCC
Confidence 98844 4654
No 163
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.19 E-value=0.011 Score=41.02 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHH-HHHHhcCCCCcceE
Q 030327 77 LKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQ-GLKEYSSWPTFPQL 147 (179)
Q Consensus 77 ~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~-~L~~~sg~~tvP~V 147 (179)
.++.+.++.+++ +|+|+..+ .||++|+...+.+-+ ..-.|..+.|+.+..-.. .+.. ..+|.+
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~ 77 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTF 77 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEE
T ss_pred HHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEE
Confidence 444455544444 46666654 699999988876622 223455554443322222 2222 238888
Q ss_pred ee
Q 030327 148 YI 149 (179)
Q Consensus 148 fI 149 (179)
++
T Consensus 78 ~~ 79 (82)
T PF13899_consen 78 FF 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 164
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.19 E-value=0.021 Score=40.04 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCCchHHHHHHHHHhc----C----CCeEEEEcCC-CHHHHHHHHHhcCCCCcceEee
Q 030327 101 PQCGFSHTVVQILKSL----N----APFETVNILE-NEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~----g----v~y~~vdV~~-d~~~~~~L~~~sg~~tvP~VfI 149 (179)
+||++|++....+.+. . +.+..+|.+. ++.+.+ ..+...+|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~i~~~P~~~~ 81 (105)
T cd02998 28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK----KYGVSGFPTLKF 81 (105)
T ss_pred CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHH----hCCCCCcCEEEE
Confidence 6999999888877442 2 3455566655 444433 346678998854
No 165
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.16 E-value=0.021 Score=44.82 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=29.2
Q ss_pred hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------------CCCeEEEEcCCCH
Q 030327 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------------NAPFETVNILENE 129 (179)
Q Consensus 84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------------gv~y~~vdV~~d~ 129 (179)
-.+...|+||... .|||.|++....|.++ ++.+..|+++++.
T Consensus 22 ~~kgk~vlL~FwA----sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 22 RLENRVLLLFFGA----VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred HhCCCEEEEEEEC----CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 3456677777776 6999999999888651 3555666666553
No 166
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.15 E-value=0.052 Score=37.44 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=48.9
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH--hcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE--YSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~--~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
.++|.. +..+.|.+++-+|.+.|++|+.+.++..++..+ +.. .....++|.+.+||..+.....+..+.
T Consensus 2 ~~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 356776 367889999999999999999888764332211 111 112558999999998888877777664
No 167
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.08 E-value=0.07 Score=40.37 Aligned_cols=72 Identities=22% Similarity=0.205 Sum_probs=51.0
Q ss_pred HHHhhhcCCcEEEEEeeCCCCCCCc---hHHHHHHHHHhc--CCCeEEEEcCCC-HHHHHHHHHhcCCC--CcceE--ee
Q 030327 80 TLDKVVTGNKVVLFMKGTKDFPQCG---FSHTVVQILKSL--NAPFETVNILEN-EMLRQGLKEYSSWP--TFPQL--YI 149 (179)
Q Consensus 80 ~l~~li~~~~Vvlysk~t~~~p~Cp---~C~~ak~lL~~~--gv~y~~vdV~~d-~~~~~~L~~~sg~~--tvP~V--fI 149 (179)
..++.+..++.+|..-..+| |||+ .|+++..-+.+. .|.+..||++.. +.....|.+..|-. .+|+| |.
T Consensus 10 nF~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~ 88 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFH 88 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEe
Confidence 36778888887777776666 9999 999988666443 367888888532 22335677777877 89987 66
Q ss_pred CCE
Q 030327 150 EGE 152 (179)
Q Consensus 150 dG~ 152 (179)
+|+
T Consensus 89 ~g~ 91 (116)
T cd03007 89 GGD 91 (116)
T ss_pred CCC
Confidence 774
No 168
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.07 E-value=0.038 Score=41.08 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=40.9
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH-H-------------------HHHHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM-L-------------------RQGLK 136 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~-~-------------------~~~L~ 136 (179)
....|+||... +||+.|++....|.+. ++.+..++++.+.+ . ...+.
T Consensus 17 ~gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T cd03009 17 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN 92 (131)
T ss_pred CCcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH
Confidence 34557777665 6999999877776432 34556667765532 1 23445
Q ss_pred HhcCCCCcceEee---CCEEE
Q 030327 137 EYSSWPTFPQLYI---EGEFF 154 (179)
Q Consensus 137 ~~sg~~tvP~VfI---dG~~I 154 (179)
+..|...+|.+++ +|+.+
T Consensus 93 ~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 93 RTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 5567888998855 56544
No 169
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.98 E-value=0.018 Score=46.89 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred EEEEEeeCCCCCCCchHHHHHH----HHHhcCCCeEEEEcCCCH-----H----HHHHHHHhcCC--CCcceEee---CC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQ----ILKSLNAPFETVNILENE-----M----LRQGLKEYSSW--PTFPQLYI---EG 151 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~----lL~~~gv~y~~vdV~~d~-----~----~~~~L~~~sg~--~tvP~VfI---dG 151 (179)
+++|+.+ |||+|++... +-+++|+.+.-|+++++. . -...+.+..|. ..+|..|+ +|
T Consensus 73 lV~Fwas-----wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQG-----HCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECC-----CCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 8888885 9999998854 445668887777776431 1 12334444563 58999876 56
Q ss_pred E
Q 030327 152 E 152 (179)
Q Consensus 152 ~ 152 (179)
+
T Consensus 148 ~ 148 (181)
T PRK13728 148 L 148 (181)
T ss_pred c
Confidence 4
No 170
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.98 E-value=0.046 Score=40.95 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH---------------------HHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM---------------------LRQGLK 136 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~---------------------~~~~L~ 136 (179)
...|+|+... +||+.|++....|++. ++.+..++++.+++ ..+.+.
T Consensus 17 Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 17 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred CCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 4556666665 6999999877766432 34455666665431 233455
Q ss_pred HhcCCCCcceEe-eC--CEEE
Q 030327 137 EYSSWPTFPQLY-IE--GEFF 154 (179)
Q Consensus 137 ~~sg~~tvP~Vf-Id--G~~I 154 (179)
+..|...+|.++ || |+.+
T Consensus 93 ~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 556778889886 44 5544
No 171
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0076 Score=49.31 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327 92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK 165 (179)
Q Consensus 92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~ 165 (179)
+|..+ .||||.+++.++.-+|++++..-++.|++. .-. .+-|..+||.+.- ||+.++..=++..+..
T Consensus 3 LYIYd-----HCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp~-rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 3 LYIYD-----HCPFCVRARMIFGLKNIPVELHVLLNDDEE-TPI-RMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred eeEec-----cChHHHHHHHHhhccCCChhhheeccCccc-Chh-hhhcccccceEEccccccchhhhHHHHHHH
Confidence 56664 799999999999999999887666544332 111 2348999999966 6788887656555443
No 172
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.85 E-value=0.023 Score=39.65 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
..++|.++.-+|+..|++|+.+++...+. ......+|.+.+||+.|++..-+..+..
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 46789999999999999999986532111 1223679999999999999988887654
No 173
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.78 E-value=0.032 Score=47.99 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=56.9
Q ss_pred HHhhhcCCcEEEEEee-CCCCCC-CchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327 81 LDKVVTGNKVVLFMKG-TKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 81 l~~li~~~~Vvlysk~-t~~~p~-Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d 158 (179)
.++-.+...|.+|.-. ++..|+ .|||-++--+|+..+++|+.++- .++.++...++|-|-.||++|.+.|
T Consensus 37 hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~--------~~~~rSr~G~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 37 HKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC--------SLKRRSRNGTLPFIELNGEHIADSD 108 (281)
T ss_pred hhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc--------cceeeccCCCcceEEeCCeeccccH
Confidence 3345566778888775 333333 57999999999999999998875 2335667889999999999999998
Q ss_pred HHHH
Q 030327 159 ITVE 162 (179)
Q Consensus 159 el~~ 162 (179)
.+..
T Consensus 109 ~I~~ 112 (281)
T KOG4244|consen 109 LIED 112 (281)
T ss_pred HHHH
Confidence 6554
No 174
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.76 E-value=0.038 Score=38.75 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=32.8
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcC--------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN--------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE 152 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g--------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~ 152 (179)
.++|+..+ +||++|+.....|++.. +.+..+|.+.++ + ....+...+|.+++ +|+
T Consensus 20 ~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~----~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 20 DVLVEFYA----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-V----PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred cEEEEEEC----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-h----hhhccCCCCCEEEEEcCCC
Confidence 45554444 69999999888775542 345566665542 2 22234468887743 454
No 175
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.035 Score=44.63 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=56.3
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH-HHHHHHHHhcCCCCcceEeeCCE-EEeecHHHHHHHHc
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIEGE-FFGGCDITVEAYKN 166 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~-~~~~~L~~~sg~~tvP~VfIdG~-~IGG~del~~l~~~ 166 (179)
.+|.. +.+|+|.++.-.|.++|++|+.+.|+... ....++.+++...+||.+..+|- .+-....|.++.++
T Consensus 2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 35555 47799999999999999999999987653 55577888888999999998875 67777777766544
No 176
>PLN02309 5'-adenylylsulfate reductase
Probab=95.69 E-value=0.034 Score=51.19 Aligned_cols=58 Identities=12% Similarity=0.287 Sum_probs=35.3
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQL--YIEGE 152 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~V--fIdG~ 152 (179)
..++|+... |||++|+.+...+.++ ++.+-.+|++ .+.++ ..+..+...+|.+ |.+|.
T Consensus 366 k~vlV~FyA----pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 366 EPWLVVLYA----PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred CeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEEEeCCC
Confidence 334444443 7999999988888554 3556777776 43333 2223456677777 44553
No 177
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.61 E-value=0.053 Score=43.57 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=41.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHh--cCCCeEEEEc--CC---------------CH--HH----------------
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETVNI--LE---------------NE--ML---------------- 131 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~--~gv~y~~vdV--~~---------------d~--~~---------------- 131 (179)
.|++|+. +.||||+++.+.+.+ .++.+..+.+ .. |+ .+
T Consensus 80 ~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 80 VVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred EEEEEEC-----CCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 4666666 799999999999974 3454444433 11 00 00
Q ss_pred ------HHHHHHhcCCCCcceEee-CCEEEeecHH
Q 030327 132 ------RQGLKEYSSWPTFPQLYI-EGEFFGGCDI 159 (179)
Q Consensus 132 ------~~~L~~~sg~~tvP~VfI-dG~~IGG~de 159 (179)
...+.+..|...+|.+++ ||+.+.|+..
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEEECCCeEecCCCC
Confidence 112233347788999888 5899988764
No 178
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.58 E-value=0.06 Score=49.67 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=37.4
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE 152 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~ 152 (179)
...|+|+... |||++|+.+...|++. ++.+..+|++.++. +......+...+|.+ |.+|.
T Consensus 371 ~k~VLV~FyA----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 371 KEAWLVVLYA----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred CCeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECCC
Confidence 3345555554 7999999998887543 35677788876532 122223355677776 55663
No 179
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.55 E-value=0.047 Score=46.68 Aligned_cols=71 Identities=13% Similarity=0.286 Sum_probs=53.2
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCC--HH-----HHHHHHHhcCCC
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILEN--EM-----LRQGLKEYSSWP 142 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d--~~-----~~~~L~~~sg~~ 142 (179)
..+.+..++++.+...+++|..+ .|++|.+...+| +++|++...|++|.. +. .-..+.+..|..
T Consensus 138 ~~~~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~ 212 (256)
T TIGR02739 138 KEQKEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK 212 (256)
T ss_pred HHHHHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc
Confidence 44557788889999999999997 899999888777 567999999998753 11 112334444777
Q ss_pred CcceEee
Q 030327 143 TFPQLYI 149 (179)
Q Consensus 143 tvP~VfI 149 (179)
.+|.+|+
T Consensus 213 ~~Pal~L 219 (256)
T TIGR02739 213 YFPALYL 219 (256)
T ss_pred cCceEEE
Confidence 8999976
No 180
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.046 Score=45.61 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHhcCCCe--EEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 101 PQCGFSHTVVQILKSLNAPF--ETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~y--~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
..||||+++...|...+++| ..||+..-+ +.++..++...+|.|-.||+.+-..+.+.+..++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHH
Confidence 47999999999999999876 556664444 3566778888999999999999999888776543
No 181
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.41 E-value=0.049 Score=43.32 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=50.3
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK 165 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~ 165 (179)
.+|+. +.|+++++++-+|..+|++|+.++++.... ...+.+++...++|.+.. ||..+-....+.++.+
T Consensus 2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 46666 479999999999999999999988754211 134445677889999984 6777776666665443
No 182
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.37 E-value=0.06 Score=45.87 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCC--CHH-----HHHHHHHhcCCCC
Q 030327 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILE--NEM-----LRQGLKEYSSWPT 143 (179)
Q Consensus 75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~--d~~-----~~~~L~~~sg~~t 143 (179)
.+.+..++++.+...++.|..+ .||+|.+.-.+| +++|+++.-|.+|. .+. .-....+..|...
T Consensus 132 ~~~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~ 206 (248)
T PRK13703 132 AQQRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY 206 (248)
T ss_pred HHHHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc
Confidence 3446678888899999999997 899999877777 55688888888864 111 1122334457788
Q ss_pred cceEee
Q 030327 144 FPQLYI 149 (179)
Q Consensus 144 vP~VfI 149 (179)
+|.+|+
T Consensus 207 ~PAl~L 212 (248)
T PRK13703 207 FPALML 212 (248)
T ss_pred cceEEE
Confidence 999976
No 183
>PLN02395 glutathione S-transferase
Probab=95.36 E-value=0.079 Score=42.43 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=54.5
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
+.||.. +.| .+.+++-+|.++|++|+.+.++.. +....++.+.+-..++|.+..+|..+.....+.++..+
T Consensus 3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 578874 354 489999999999999998887532 23335677778888999999999888888887776553
No 184
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=95.28 E-value=0.071 Score=41.97 Aligned_cols=59 Identities=14% Similarity=0.348 Sum_probs=37.2
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEcCCCHH---------HHHHHHHhc---CCCCcceEee
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILENEM---------LRQGLKEYS---SWPTFPQLYI 149 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV~~d~~---------~~~~L~~~s---g~~tvP~VfI 149 (179)
.+..++.|..+ ||++|++....|++ +++.+..++++++.. ..+.+.... +...+|..|+
T Consensus 50 ~~~~lvnFWAs-----WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQS-----TCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECC-----CChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 34557777774 99999998888854 467777777765320 012223333 4568898855
No 185
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=95.17 E-value=0.12 Score=41.75 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-----CCE--EEeecHHH
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-----EGE--FFGGCDIT 160 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-----dG~--~IGG~del 160 (179)
+.+|.. .+++|.++.-+|.++|++|+.++|+- ++....++.+++-..++|.+.. ||+ .+-....+
T Consensus 2 ~~Ly~~------~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI 75 (215)
T PRK13972 2 IDLYFA------PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI 75 (215)
T ss_pred eEEEEC------CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHH
Confidence 457765 36899999999999999999888753 3333456778888889999987 452 46666666
Q ss_pred HHHHH
Q 030327 161 VEAYK 165 (179)
Q Consensus 161 ~~l~~ 165 (179)
.++.+
T Consensus 76 ~~YL~ 80 (215)
T PRK13972 76 LLYLA 80 (215)
T ss_pred HHHHH
Confidence 66544
No 186
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.13 E-value=0.11 Score=40.14 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=37.4
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHH-HH-----------------HHHHHhcCC
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEM-LR-----------------QGLKEYSSW 141 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~-~~-----------------~~L~~~sg~ 141 (179)
...++|+... +||++|+.....|.+. ++.+-.++.+.+++ .+ ..+.+..|.
T Consensus 61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 4445555554 6999999866555332 35566666655432 21 244445577
Q ss_pred CCcceEe-e--CCEEE
Q 030327 142 PTFPQLY-I--EGEFF 154 (179)
Q Consensus 142 ~tvP~Vf-I--dG~~I 154 (179)
..+|.+| | +|+.+
T Consensus 137 ~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 137 GPLPTTFLIDKDGKVV 152 (173)
T ss_pred CCcCeEEEECCCCcEE
Confidence 7889754 5 47655
No 187
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=95.13 E-value=0.078 Score=36.45 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=44.6
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
.+|+|-++..+|+-.|++|+.+.. .|+. .+....+|.|..+|+.|+|++.+.++.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~-~n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPS-NNPW-------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEec-CCCC-------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 579999999999999999976533 2221 22345699999999999999999887543
No 188
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.08 E-value=0.33 Score=36.23 Aligned_cols=72 Identities=15% Similarity=0.324 Sum_probs=50.3
Q ss_pred HHHhhhc---CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEe-
Q 030327 80 TLDKVVT---GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSS-WPTFPQLY- 148 (179)
Q Consensus 80 ~l~~li~---~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~Vf- 148 (179)
.++++++ ..+++||--+ ..||=+..|.+-|++. ++++.++||.++.++-+++.+.+| ...-||++
T Consensus 9 ql~~i~~~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHhcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3444444 5778888888 4899999999887553 289999999999999999999888 45679884
Q ss_pred -eCCEEEe
Q 030327 149 -IEGEFFG 155 (179)
Q Consensus 149 -IdG~~IG 155 (179)
-||+.+-
T Consensus 85 i~~g~~v~ 92 (105)
T PF11009_consen 85 IKNGKVVW 92 (105)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 4888774
No 189
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.90 E-value=0.22 Score=39.96 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHH----------------HhcCCCCcce
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLK----------------EYSSWPTFPQ 146 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~----------------~~sg~~tvP~ 146 (179)
.+.++||... +|||.|++....+ ++.++++..+..++.++.++.++ +.+|...+|.
T Consensus 74 gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 74 GRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 4456665554 6999999876655 44466766666443333333332 2235567897
Q ss_pred Eee---CCEEE
Q 030327 147 LYI---EGEFF 154 (179)
Q Consensus 147 VfI---dG~~I 154 (179)
.|+ +|+.+
T Consensus 150 ~~lID~~G~I~ 160 (189)
T TIGR02661 150 GVLLDQDGKIR 160 (189)
T ss_pred EEEECCCCeEE
Confidence 766 46654
No 190
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=94.89 E-value=0.16 Score=36.48 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEc-CCCHHHHHHHHHhcCCCCcceEe
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNI-LENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV-~~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
...++|+..+ +||+.|++....|+++. -.+..+-+ +.+.+..+.+.+..+...+|.++
T Consensus 21 gk~vvl~F~~----~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLS----PTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEEC----CCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 4456666555 69999998887776542 12222322 23333333333333444567654
No 191
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.87 E-value=0.22 Score=39.25 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=27.5
Q ss_pred hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCC
Q 030327 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILEN 128 (179)
Q Consensus 84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d 128 (179)
..+...+++|... .||+.|++....|++. ++.+-.+++++.
T Consensus 60 ~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 60 FIQGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred hcCCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 3345566666665 6999999887777554 666667776543
No 192
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.83 E-value=0.13 Score=45.47 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=41.5
Q ss_pred HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------cC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------LN--APFETVNILENEMLRQGLKEYSSWPTFPQL-- 147 (179)
Q Consensus 80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-- 147 (179)
.++++++.++ ++|+... +||++|++....+.+ .+ +.+..+|.+.+.++ .+..|...+|.+
T Consensus 10 ~~~~~i~~~~~~~v~f~a----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYA----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDL----AQKYGVSGYPTLKI 81 (462)
T ss_pred HHHHHHhcCCCEEEEEEC----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHH----HHhCCCccccEEEE
Confidence 3455555655 4444443 799999988766543 33 66777777766544 344466778877
Q ss_pred eeCCEE
Q 030327 148 YIEGEF 153 (179)
Q Consensus 148 fIdG~~ 153 (179)
|.+|+.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 556765
No 193
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=94.77 E-value=0.14 Score=39.20 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCCC-------HHHHHHHHHhcCCCCcceEeeCCEEE--eec---HHHHHH
Q 030327 107 HTVVQILKSLNAPFETVNILEN-------EMLRQGLKEYSSWPTFPQLYIEGEFF--GGC---DITVEA 163 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV~~d-------~~~~~~L~~~sg~~tvP~VfIdG~~I--GG~---del~~l 163 (179)
..+.++|++.|++++.+|+..+ +.+++.|... |...+|.++|||+.+ |.| +++.++
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVdGeiv~~G~YPt~eEl~~~ 97 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVDGEIVKTGRYPTNEELAEW 97 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEEEESS---HHHHHHH
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEECCEEEEecCCCCHHHHHHH
Confidence 3677888999999999999764 5566666654 889999999999887 555 444444
No 194
>PRK11752 putative S-transferase; Provisional
Probab=94.72 E-value=0.14 Score=43.30 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCC----
Q 030327 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEG---- 151 (179)
Q Consensus 84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG---- 151 (179)
....+.+.+|+. .+++|.+|.-+|.++ |++|+.+.|+ ..+....++.+..-..++|++..++
T Consensus 39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~ 112 (264)
T PRK11752 39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPP 112 (264)
T ss_pred CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCC
Confidence 455668999986 599999999999997 8889887764 2233345677787888999998752
Q ss_pred EEEeecHHHHHHHH
Q 030327 152 EFFGGCDITVEAYK 165 (179)
Q Consensus 152 ~~IGG~del~~l~~ 165 (179)
..+.....+.++..
T Consensus 113 ~~L~ES~AIl~YL~ 126 (264)
T PRK11752 113 IRVFESGAILLYLA 126 (264)
T ss_pred eEEEcHHHHHHHHH
Confidence 46777777776554
No 195
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.62 E-value=0.17 Score=38.49 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcC-CcEEEEEeeC---CCCCCCchHHHHHHHHHh----c--CCCeEEEEcCCCHHHHH---HHHH--hcC
Q 030327 76 ELKSTLDKVVTG-NKVVLFMKGT---KDFPQCGFSHTVVQILKS----L--NAPFETVNILENEMLRQ---GLKE--YSS 140 (179)
Q Consensus 76 ~~~~~l~~li~~-~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~----~--gv~y~~vdV~~d~~~~~---~L~~--~sg 140 (179)
+..+.+++..+. .++.||..++ .-..|||.|.++..++++ . +..+.++.|..-++.++ .++. ...
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~ 86 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK 86 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee
Confidence 345556654433 5666666654 356899999999876644 2 33466667743222221 2232 234
Q ss_pred CCCcceEee
Q 030327 141 WPTFPQLYI 149 (179)
Q Consensus 141 ~~tvP~VfI 149 (179)
-..+|.+.-
T Consensus 87 l~~IPTLi~ 95 (119)
T PF06110_consen 87 LKGIPTLIR 95 (119)
T ss_dssp --SSSEEEE
T ss_pred eeecceEEE
Confidence 567999853
No 196
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=94.61 E-value=0.31 Score=35.80 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCC
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILEN 128 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d 128 (179)
...++|+..+ .||+.|......|+++ ++.+..++++++
T Consensus 25 gk~vvv~F~a----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~ 66 (127)
T cd03010 25 GKPYLLNVWA----SWCAPCREEHPVLMALARQGRVPIYGINYKDN 66 (127)
T ss_pred CCEEEEEEEc----CcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence 4445555555 5999999888877554 355555555433
No 197
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.61 E-value=0.18 Score=36.82 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHH-HHHhcC------CCeEEEEcCCC-HHHHHHHHHhcCCCCcce
Q 030327 76 ELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQ-ILKSLN------APFETVNILEN-EMLRQGLKEYSSWPTFPQ 146 (179)
Q Consensus 76 ~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~-lL~~~g------v~y~~vdV~~d-~~~~~~L~~~sg~~tvP~ 146 (179)
+.++.+++..++++ ++||..+ +||++|+...+ +|.... -.|..+-++.+ ++. ..+....+...+|.
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~-~~~~~~~~~~~~P~ 79 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEG-QRFLQSYKVDKYPH 79 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccH-HHHHHHhCccCCCe
Confidence 34555555555544 7777776 79999998754 453322 23544444332 333 34555567788998
Q ss_pred E-ee---CCEEE
Q 030327 147 L-YI---EGEFF 154 (179)
Q Consensus 147 V-fI---dG~~I 154 (179)
+ |+ +|+.+
T Consensus 80 ~~~i~~~~g~~l 91 (114)
T cd02958 80 IAIIDPRTGEVL 91 (114)
T ss_pred EEEEeCccCcEe
Confidence 8 44 46555
No 198
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=94.58 E-value=0.22 Score=39.71 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=30.5
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHH-HHHHHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEM-LRQGLK 136 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~-~~~~L~ 136 (179)
+...++|+... .||++|++....|+++ ++.+..++++++.+ +++.++
T Consensus 67 ~gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 67 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 45556665554 5999999887776554 67777777766543 444433
No 199
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.45 E-value=0.26 Score=37.04 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=34.4
Q ss_pred hcCCcEEEEEeeCCCCC-CCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHH
Q 030327 85 VTGNKVVLFMKGTKDFP-QCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKE 137 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p-~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~ 137 (179)
.+..+++|+... . |||.|......|++ .++.+..+..+.++.+++.+.+
T Consensus 26 ~~gk~~vv~f~~----~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 26 FKGKPVVVNFWA----SAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp GTTSEEEEEEES----TTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred hCCCeEEEEEEc----cCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 445666666665 5 99999977755533 4577888888888777666665
No 200
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=94.37 E-value=0.13 Score=36.23 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCC--CcceEee
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWP--TFPQLYI 149 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~--tvP~VfI 149 (179)
-+++|.. +||+.|+.++..|++. .+.|..+|+++++++ .+..|-. .+|++.+
T Consensus 15 ~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence 3444554 5999999999998664 256777777665443 3334555 8898854
No 201
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.18 E-value=0.35 Score=33.56 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=26.4
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCC-HHHHHHHHHh
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILEN-EMLRQGLKEY 138 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d-~~~~~~L~~~ 138 (179)
++||..+ +||+.|.+....|.++ ++.+..|.++++ ++.++.+++.
T Consensus 4 ~ll~fwa----~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 4 VLLYFWA----SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEE-----TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 4555554 5999999888877543 334556666665 4444444443
No 202
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.14 E-value=0.13 Score=34.83 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEc
Q 030327 91 VLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNI 125 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV 125 (179)
++|.. +.||+|..+...|.+. ++.+..+.+
T Consensus 2 ~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 2 VEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred eEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 45555 6999999999988774 345555554
No 203
>PTZ00102 disulphide isomerase; Provisional
Probab=94.05 E-value=0.24 Score=44.52 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=38.8
Q ss_pred HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------c--CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327 81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------L--NAPFETVNILENEMLRQGLKEYSSWPTFPQL--Y 148 (179)
Q Consensus 81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~--gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f 148 (179)
++++++.++ ++|+... +||++|+++...+.+ . ++.+..+|.+.+.++. +..|...+|.+ |
T Consensus 42 f~~~i~~~~~~lv~f~a----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~----~~~~i~~~Pt~~~~ 113 (477)
T PTZ00102 42 FDKFITENEIVLVKFYA----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELA----QEFGVRGYPTIKFF 113 (477)
T ss_pred HHHHHhcCCcEEEEEEC----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHH----HhcCCCcccEEEEE
Confidence 444444443 4444443 799999988765432 2 2557777777766543 33456677876 4
Q ss_pred eCCEE
Q 030327 149 IEGEF 153 (179)
Q Consensus 149 IdG~~ 153 (179)
-+|+.
T Consensus 114 ~~g~~ 118 (477)
T PTZ00102 114 NKGNP 118 (477)
T ss_pred ECCce
Confidence 46653
No 204
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.98 E-value=0.28 Score=33.45 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCC-CCcceEeeC-CEEEeecHHHHHHH
Q 030327 105 FSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSW-PTFPQLYIE-GEFFGGCDITVEAY 164 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~-~tvP~VfId-G~~IGG~del~~l~ 164 (179)
.|..++-+|+..|++|+.+.++ .++...+++++..-. ..+|.+..+ |..+...-.+..+.
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 8899999999999999888765 333333666766666 899999999 99988877776654
No 205
>PTZ00057 glutathione s-transferase; Provisional
Probab=93.80 E-value=0.48 Score=38.05 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH-H--HHHHH--HhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM-L--RQGLK--EYSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~-~--~~~L~--~~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
.++||... ..+.+..++-+|...|++|+.+.+.+..+ . .++++ ..+-...+|.+.+||..+.....+..+
T Consensus 4 ~~~L~y~~-----~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFD-----ARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecC-----CCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 47788773 57789999999999999999998754322 1 11222 245678999999999888887776665
Q ss_pred H
Q 030327 164 Y 164 (179)
Q Consensus 164 ~ 164 (179)
.
T Consensus 79 L 79 (205)
T PTZ00057 79 L 79 (205)
T ss_pred H
Confidence 3
No 206
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.16 Score=43.65 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=47.5
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceE-
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQL- 147 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V- 147 (179)
+++.+.++...=-..-||=|+.+ ||+.|+++-.++..+- .-|-.|||++.... ..-.|....|..
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~-----wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t----aa~~gV~amPTFi 79 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTAS-----WCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT----AATNGVNAMPTFI 79 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEec-----ccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch----hhhcCcccCceEE
Confidence 34555555544333446667775 9999999999997763 33778888544332 233466667765
Q ss_pred -eeCCEEEe
Q 030327 148 -YIEGEFFG 155 (179)
Q Consensus 148 -fIdG~~IG 155 (179)
|.||+.|-
T Consensus 80 ff~ng~kid 88 (288)
T KOG0908|consen 80 FFRNGVKID 88 (288)
T ss_pred EEecCeEee
Confidence 88998774
No 207
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=93.69 E-value=0.7 Score=36.89 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=43.5
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHH----HHHHHh---cCCCeEEEEcCCC---H--------------------H
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTV----VQILKS---LNAPFETVNILEN---E--------------------M 130 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~a----k~lL~~---~gv~y~~vdV~~d---~--------------------~ 130 (179)
+.+.+...-|.+|... .|||.|+.- +++.++ .+-+|+.|=|+.| . +
T Consensus 27 ~~~~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~ 102 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD 102 (157)
T ss_pred HhHhhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH
Confidence 4445666778888776 799999953 444433 3445777666443 1 2
Q ss_pred HHHHHHHhcCCCCcceEee---CCEEE
Q 030327 131 LRQGLKEYSSWPTFPQLYI---EGEFF 154 (179)
Q Consensus 131 ~~~~L~~~sg~~tvP~VfI---dG~~I 154 (179)
..+.|...++..++|.+.+ ||..|
T Consensus 103 ~~~~l~~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 103 LIQKLSEKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HHHHHHHhcccCcCceeEEecCCCCEe
Confidence 3455555667777887755 66554
No 208
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.22 Score=46.37 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=45.0
Q ss_pred HHHHhhhcCCcEEEEEeeCCCCCCCchHHH-------HHHHHHhcC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHT-------VVQILKSLN--APFETVNILENEMLRQGLKEYSSWPTFPQL-- 147 (179)
Q Consensus 79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~-------ak~lL~~~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-- 147 (179)
..+++.|..+..+++.-- +|||++|++ +-..|.+.+ +....||-.++ ..+...++.+.+|++
T Consensus 33 dnf~~~i~~~~~vlVeFY---APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlki 105 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFY---APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKI 105 (493)
T ss_pred ccHHHHhccCceEEEEEE---chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEE
Confidence 347788888887655543 389999984 556677764 44555555444 445555567777776
Q ss_pred eeCCEE
Q 030327 148 YIEGEF 153 (179)
Q Consensus 148 fIdG~~ 153 (179)
|.||+.
T Consensus 106 FrnG~~ 111 (493)
T KOG0190|consen 106 FRNGRS 111 (493)
T ss_pred EecCCc
Confidence 778874
No 209
>smart00594 UAS UAS domain.
Probab=93.54 E-value=0.57 Score=34.90 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHH-HHHhcC------CCeEE--EEcCCCHHHHHHHHHhcCCCCcc
Q 030327 76 ELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQ-ILKSLN------APFET--VNILENEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 76 ~~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~-lL~~~g------v~y~~--vdV~~d~~~~~~L~~~sg~~tvP 145 (179)
..++.+++..++. .+.||.-+ +||++|+...+ +|..-. -.|.. +|+...+. ..+.+..+..++|
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~P 88 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSFP 88 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCCC
Confidence 4556666666665 46677766 79999997544 332221 13444 45544332 3566666888899
Q ss_pred eEee
Q 030327 146 QLYI 149 (179)
Q Consensus 146 ~VfI 149 (179)
.+.+
T Consensus 89 ~~~~ 92 (122)
T smart00594 89 YVAI 92 (122)
T ss_pred EEEE
Confidence 8844
No 210
>PRK10542 glutathionine S-transferase; Provisional
Probab=93.36 E-value=0.25 Score=39.03 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCCC--H-HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327 105 FSHTVVQILKSLNAPFETVNILEN--E-MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK 165 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~~d--~-~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~ 165 (179)
.+.++.-+|.++|++|+.+.|+-. + ...+++.+++-...+|++.+ ||..|-....+.++.+
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~ 74 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA 74 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence 467788889999999998877532 1 12356777888889999986 6778887777777653
No 211
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=93.08 E-value=0.85 Score=31.58 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHhcCCCeEEEEcCCC--HHH--HHHHHHh----cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 103 CGFSHTVVQILKSLNAPFETVNILEN--EML--RQGLKEY----SSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 103 Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~--~~~L~~~----sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
-+.|.+++-+|...|++|+.+.|+-. +.. .+.+... .-..++|.+..||..+.-...+..+..
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 35788999999999999998877532 111 1111111 145689999999988888777776653
No 212
>PTZ00102 disulphide isomerase; Provisional
Probab=92.86 E-value=0.22 Score=44.78 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=34.6
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
..|+|+... +||++|+.....|.+. .+.+..+|.+.++... ...+...+|.++
T Consensus 376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~----~~~~v~~~Pt~~ 436 (477)
T PTZ00102 376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPL----EEFSWSAFPTIL 436 (477)
T ss_pred CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccch----hcCCCcccCeEE
Confidence 346666665 7999999998888654 1346667777665432 223556778773
No 213
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=92.68 E-value=0.61 Score=33.98 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=38.5
Q ss_pred EEEEeeCCCCCCCchH------HHHHHHHHhc--------CCCeEEEEcCCC---HHHHHHHHHhc-CCCCcceEeeCCE
Q 030327 91 VLFMKGTKDFPQCGFS------HTVVQILKSL--------NAPFETVNILEN---EMLRQGLKEYS-SWPTFPQLYIEGE 152 (179)
Q Consensus 91 vlysk~t~~~p~Cp~C------~~ak~lL~~~--------gv~y~~vdV~~d---~~~~~~L~~~s-g~~tvP~VfIdG~ 152 (179)
++|+.. .-|.-| +...+||+.. .+.|+++||... +..++...++- .---+|.|.+||+
T Consensus 1 ~VYGAe----~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e 76 (93)
T PF07315_consen 1 VVYGAE----VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE 76 (93)
T ss_dssp EEEE-S----S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE
T ss_pred Cccccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE
Confidence 467765 356665 4556666432 345889999643 22333333332 3345899999999
Q ss_pred EEe-ecHHHHHHH
Q 030327 153 FFG-GCDITVEAY 164 (179)
Q Consensus 153 ~IG-G~del~~l~ 164 (179)
.|| |.=.|+..+
T Consensus 77 iV~EGnp~LK~I~ 89 (93)
T PF07315_consen 77 IVAEGNPQLKDIY 89 (93)
T ss_dssp EEEESS--HHHHH
T ss_pred EEecCCccHHHHH
Confidence 998 665666554
No 214
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=92.60 E-value=0.14 Score=37.20 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=17.7
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
..++|+..+ +||+.|......|.++
T Consensus 21 k~~vl~F~~----~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWA----TWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEEC----CcChhhhhhChHHHHH
Confidence 445555554 6999999988777654
No 215
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.50 E-value=0.96 Score=33.58 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=33.4
Q ss_pred hhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327 83 KVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 83 ~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
+.....+ |++|... .|||+|.+-..-|.+ .|+.+.-|..+..+... .+.+..+ ..+|.+.
T Consensus 19 ~~~~~~~~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~-~~~p~~~ 86 (149)
T cd02970 19 ALLGEGPVVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF-LPFPVYA 86 (149)
T ss_pred HHhcCCCEEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC-CCCeEEE
Confidence 3444344 5555544 599999986665544 35666666665544444 3333323 3577544
No 216
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.35 Score=37.14 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=38.6
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeC----CCCCCCchHHHHHHHHHh-c-----CCCeEEEEcCC
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGT----KDFPQCGFSHTVVQILKS-L-----NAPFETVNILE 127 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t----~~~p~Cp~C~~ak~lL~~-~-----gv~y~~vdV~~ 127 (179)
-++.++.++..-+...|.+|..+. .-.+|||+|.+|-.++.+ + ++.|..++|-+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 356777788887777787777763 346899999999887754 2 34577777754
No 217
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.10 E-value=0.85 Score=31.36 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC--HHHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN--EMLRQGLKE 137 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d--~~~~~~L~~ 137 (179)
...++++... +||+.|.+....|.+. ++.+..++++.+ +++++.+.+
T Consensus 19 ~k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 19 GKVVLVNFWA----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CCEEEEEeec----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 3444544444 5999999777666443 456777777764 444444333
No 218
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=92.07 E-value=0.87 Score=37.63 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=34.1
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeE--EEEcC---------CCHH---HHHHHHHhcC--CCCcceEee
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN----APFE--TVNIL---------ENEM---LRQGLKEYSS--WPTFPQLYI 149 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~--~vdV~---------~d~~---~~~~L~~~sg--~~tvP~VfI 149 (179)
|.||+. .+|.-|--|-++|.++. |=.- .||.. ..++ .++...+..| ....||++|
T Consensus 2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 789999 59999999999997763 2111 22221 1232 2334444444 344799999
Q ss_pred CCE-EEeecH
Q 030327 150 EGE-FFGGCD 158 (179)
Q Consensus 150 dG~-~IGG~d 158 (179)
||+ +.+|.+
T Consensus 77 nG~~~~~g~~ 86 (202)
T PF06764_consen 77 NGREHRVGSD 86 (202)
T ss_dssp TTTEEEETT-
T ss_pred CCeeeeeccC
Confidence 994 556665
No 219
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.98 E-value=0.95 Score=36.28 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=33.5
Q ss_pred HHHhhhcCCcEEEEEeeCCCCCCCchHHHHHH----------HHHhcCCCeEEEEcCCCHHHHHHHH----HhcCCCCcc
Q 030327 80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ----------ILKSLNAPFETVNILENEMLRQGLK----EYSSWPTFP 145 (179)
Q Consensus 80 ~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~----------lL~~~gv~y~~vdV~~d~~~~~~L~----~~sg~~tvP 145 (179)
.+++.-++++.++..-++ .+|.+|+.+.+ +|++.-|++ .+|.++.+++...+. ..+|....|
T Consensus 29 a~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~V-kvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPV-KVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEE-EEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEE-EeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 345555555544444432 58999995543 444433333 356667777765553 334555566
Q ss_pred eE-ee--CCEEEe
Q 030327 146 QL-YI--EGEFFG 155 (179)
Q Consensus 146 ~V-fI--dG~~IG 155 (179)
.. |. +|+.+-
T Consensus 105 l~vfltPdg~p~~ 117 (163)
T PF03190_consen 105 LTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TTS-EEE
T ss_pred ceEEECCCCCeee
Confidence 54 22 666664
No 220
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.72 E-value=0.92 Score=33.45 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=18.7
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
+...++||..+ .||++|.+....|+++
T Consensus 22 ~gk~vvl~F~a----~~C~~C~~~~p~l~~l 48 (126)
T cd03012 22 RGKVVLLDFWT----YCCINCLHTLPYLTDL 48 (126)
T ss_pred CCCEEEEEEEC----CCCccHHHHHHHHHHH
Confidence 45556666665 5999999877666443
No 221
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.48 E-value=1 Score=33.20 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred hcCCcEEEEEeeCCCCCCCchHH------HHHHHHHhc--------CCCeEEEEcCCC--HHHHHHHHH-h-cCCCCcce
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSH------TVVQILKSL--------NAPFETVNILEN--EMLRQGLKE-Y-SSWPTFPQ 146 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~------~ak~lL~~~--------gv~y~~vdV~~d--~~~~~~L~~-~-sg~~tvP~ 146 (179)
++..++++|+.. .-|--|. ...+||+.. ...|+++||... .+....+.+ + ...--+|.
T Consensus 2 ~~~~~l~VyGae----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 2 VNEAKLVVYGAE----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred CceeEEEEecch----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 445678899887 3576664 556666442 345889999543 222222222 2 23456899
Q ss_pred EeeCCEEEe-ecHHHHHHH
Q 030327 147 LYIEGEFFG-GCDITVEAY 164 (179)
Q Consensus 147 VfIdG~~IG-G~del~~l~ 164 (179)
|.++|+.|+ |.-.+++.+
T Consensus 78 ivvedeiVaeGnprlKdiy 96 (106)
T COG4837 78 IVVEDEIVAEGNPRLKDIY 96 (106)
T ss_pred EEEcceEeecCCchHHHHH
Confidence 999999997 555566554
No 222
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.39 E-value=0.76 Score=30.90 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHhc------CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEe--eCCE
Q 030327 101 PQCGFSHTVVQILKSL------NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLY--IEGE 152 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~------gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~Vf--IdG~ 152 (179)
+||++|+.....|.+. ++.+..+|+. .+.+..+.+.. ....+|.+. .+|+
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence 5999999998888554 2567788885 56666666553 122345553 5554
No 223
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=91.33 E-value=0.95 Score=35.05 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHhhhcCC-cEEEEEee-CCCCCCCchHHHHHHHH-HhcC---CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327 81 LDKVVTGN-KVVLFMKG-TKDFPQCGFSHTVVQIL-KSLN---APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE 152 (179)
Q Consensus 81 l~~li~~~-~Vvlysk~-t~~~p~Cp~C~~ak~lL-~~~g---v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~ 152 (179)
++..++.+ ..+||..+ -...|.+..-.-+..-| ++++ +.+..+|+++++++... +|-..+|.+ |-||+
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~----fgV~siPTLl~FkdGk 102 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDR----FGVFRFPATLVFTGGN 102 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHH----cCCccCCEEEEEECCE
Confidence 44444444 35566655 23334444444444433 3333 56888899888776554 455567766 77999
Q ss_pred EEeecH
Q 030327 153 FFGGCD 158 (179)
Q Consensus 153 ~IGG~d 158 (179)
.+|-..
T Consensus 103 ~v~~i~ 108 (132)
T PRK11509 103 YRGVLN 108 (132)
T ss_pred EEEEEe
Confidence 987553
No 224
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=91.28 E-value=0.9 Score=32.69 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=37.2
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
++++ ....++|+...+ .||++|.....-|.+ .|+.+-.+..+...+.++.+++. + ..+|.+.-
T Consensus 20 l~~l-~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~-~~~~~~~D 89 (124)
T PF00578_consen 20 LSDL-KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-G-LPFPVLSD 89 (124)
T ss_dssp GGGG-TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-T-CSSEEEEE
T ss_pred HHHH-CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh-c-cccccccC
Confidence 3445 455666666651 389999766554433 35666666676556666666654 2 45666544
No 225
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=1 Score=37.30 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
..+.++-++.+|.-.|++|++..+...+. ...++..+...++|++.|||..|...-.+..+.
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 68899999999999999999999865443 455666677889999999999998887777654
No 226
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=1 Score=36.26 Aligned_cols=89 Identities=15% Similarity=0.264 Sum_probs=50.1
Q ss_pred HHHHHhhhcCCc--EEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCC---------H---HHHHH
Q 030327 78 KSTLDKVVTGNK--VVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILEN---------E---MLRQG 134 (179)
Q Consensus 78 ~~~l~~li~~~~--Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d---------~---~~~~~ 134 (179)
.+..+.+.-.++ +++|.. ++|+||.+.++-+... ++...++++... . .-.++
T Consensus 32 ~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~E 106 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEE 106 (182)
T ss_pred HHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHH
Confidence 344444554554 555655 6999999988866322 233445555321 1 11346
Q ss_pred HHHhcCCCCcceEe-eC--CEEEe---ec---HH---HHHHHHcccHHH
Q 030327 135 LKEYSSWPTFPQLY-IE--GEFFG---GC---DI---TVEAYKNGELQE 171 (179)
Q Consensus 135 L~~~sg~~tvP~Vf-Id--G~~IG---G~---de---l~~l~~~GeL~~ 171 (179)
|.+..+.++.|.++ .| |+.|+ |+ ++ +.++..+|+.++
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd 155 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKD 155 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 77777888899884 44 45565 43 22 444555555443
No 227
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=1.2 Score=36.94 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc--CCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV--~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
++.+|+. +.-+.|+++.-.++..|++|+.+.| ...+....++..+....++|.+.-||-.+-....+..+.
T Consensus 2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl 74 (226)
T KOG0867|consen 2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYL 74 (226)
T ss_pred CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHH
Confidence 4568888 4788999999999999999988854 455666677778888899999999998888776666554
No 228
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=90.72 E-value=1.3 Score=41.57 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=19.8
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
+...|+|+... +||+.|++....|.++
T Consensus 55 kGKpVvV~FWA----TWCppCk~emP~L~eL 81 (521)
T PRK14018 55 KDKPTLIKFWA----SWCPLCLSELGETEKW 81 (521)
T ss_pred CCCEEEEEEEc----CCCHHHHHHHHHHHHH
Confidence 34556666665 6999999988887654
No 229
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=90.24 E-value=0.92 Score=32.96 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred CCchHHHHHHHHHhcCC--CeEEEEcCCCHHH--HHHHHHhc--CCCCcceEeeCCE-EEeecHHHHHHHHc
Q 030327 102 QCGFSHTVVQILKSLNA--PFETVNILENEML--RQGLKEYS--SWPTFPQLYIEGE-FFGGCDITVEAYKN 166 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv--~y~~vdV~~d~~~--~~~L~~~s--g~~tvP~VfIdG~-~IGG~del~~l~~~ 166 (179)
.||+|....+++.+.+. .++.+++...+.. .+... .+ ...+.-.+.-+|+ ...|.+-+.++...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYG-ISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcC-cCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 89999999999999874 5888898433221 11110 10 1223334434776 88999988887665
No 230
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=89.96 E-value=0.58 Score=41.40 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI 149 (179)
...++|+... +||+.|+.....+.+. ++.+..+|++.++-. . .+...+|.+++
T Consensus 364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-FEVEGFPTIKF 425 (462)
T ss_pred CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-CCccccCEEEE
Confidence 3446665554 7999999888877552 355677787665321 1 35567888744
No 231
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.85 E-value=0.38 Score=40.69 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=21.5
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEc
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNI 125 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV 125 (179)
.|++|+- +.||||++.-+-+.. -+|.+.++.+
T Consensus 120 ~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3667777 799999998665543 2366666653
No 232
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=2.5 Score=38.52 Aligned_cols=86 Identities=14% Similarity=0.293 Sum_probs=53.5
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE 150 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId 150 (179)
++++-+.++.+-......-|..- .|.-|-.+.+.|+-+ +=.....-| +....+++...+ +.-.+|.||.|
T Consensus 104 ~q~vieqik~i~g~~~FETy~Sl-----tC~nCPDVVQALN~msvlNp~I~H~~I-dGa~Fq~Evear-~IMaVPtvfln 176 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSL-----TCHNCPDVVQALNLMSVLNPRIKHTAI-DGALFQDEVEAR-NIMAVPTVFLN 176 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEe-----eccCChHHHHHHHHHHhcCCCceeEEe-cchhhHhHHHhc-cceecceEEEc
Confidence 44556666666666777777774 566666666655554 434444444 235556666655 56789999999
Q ss_pred CEEEee----cHHHHHHHHc
Q 030327 151 GEFFGG----CDITVEAYKN 166 (179)
Q Consensus 151 G~~IGG----~del~~l~~~ 166 (179)
|+.+|. .+++.+-...
T Consensus 177 Ge~fg~GRmtleeilaki~~ 196 (520)
T COG3634 177 GEEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred chhhcccceeHHHHHHHhcC
Confidence 999874 3444444444
No 233
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=89.39 E-value=0.7 Score=35.65 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHH
Q 030327 76 ELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL 113 (179)
Q Consensus 76 ~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL 113 (179)
+.++.++.+.++++ |+|+.-+ .||++|++..+..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence 45666777666655 5555544 5999999888754
No 234
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=0.89 Score=37.47 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=50.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc--CCC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV--~~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
+-++|+. |...| +.+|+-.|.-+|++|+++-| ... .+.-.++++..-..+||.+.|||..+-..=.+.++.+
T Consensus 5 KpiLYSY---WrSSC--swRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 5 KPILYSY---WRSSC--SWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cchhhhh---hcccc--hHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHH
Confidence 4566666 11234 34666677777888776655 333 4444578888788899999999999987777777655
Q ss_pred c
Q 030327 166 N 166 (179)
Q Consensus 166 ~ 166 (179)
+
T Consensus 80 E 80 (217)
T KOG0868|consen 80 E 80 (217)
T ss_pred h
Confidence 4
No 235
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=88.90 E-value=0.43 Score=42.32 Aligned_cols=75 Identities=11% Similarity=0.258 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhcCCcE-EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC-----CCHHHHHHHHHhcCCCCcceE-
Q 030327 75 PELKSTLDKVVTGNKV-VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL-----ENEMLRQGLKEYSSWPTFPQL- 147 (179)
Q Consensus 75 ~~~~~~l~~li~~~~V-vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~-----~d~~~~~~L~~~sg~~tvP~V- 147 (179)
.++.++.++.-+..-. |=|.. |||.+|++.-.++++.|.....++.. .|..-...+....|...+|.|
T Consensus 31 eDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 3455555554444443 33444 79999999999999887655444321 121112233333456667777
Q ss_pred eeCCEEE
Q 030327 148 YIEGEFF 154 (179)
Q Consensus 148 fIdG~~I 154 (179)
|..|.+.
T Consensus 106 ~~kgd~a 112 (468)
T KOG4277|consen 106 FFKGDHA 112 (468)
T ss_pred EecCCee
Confidence 5555554
No 236
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.70 E-value=1.7 Score=31.93 Aligned_cols=58 Identities=19% Similarity=0.091 Sum_probs=31.3
Q ss_pred cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327 86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf 148 (179)
....++||.. + .||+.|.....-|.+ .++.+..+.++....+++...+. +...+|.+.
T Consensus 21 ~gk~~ll~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~-~~~~~~~l~ 86 (140)
T cd02971 21 KGKWVVLFFYPK----DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE-GGLNFPLLS 86 (140)
T ss_pred CCCeEEEEEeCC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc-cCCCceEEE
Confidence 3444555544 3 489999875544433 45666666665434444444332 344566543
No 237
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=87.27 E-value=4.3 Score=31.44 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=24.9
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL 126 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~ 126 (179)
+.++.....+++|... +|||.|.....-|.++ ++.+..+.++
T Consensus 19 l~~~~~~k~~ll~f~~----t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 19 LADFADGKALVVMFIC----NHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred HHHHhCCCEEEEEEEC----CCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 4444355666777665 6999998654444332 4555555554
No 238
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=87.00 E-value=3.8 Score=30.14 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCcEEEEEe-eCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327 87 GNKVVLFMK-GTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILENEMLRQGLKEY 138 (179)
Q Consensus 87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~d~~~~~~L~~~ 138 (179)
...++|+.. + .|||.|.....-| .+.++.+..+.++....+++.+++.
T Consensus 23 gk~~ll~f~~~----~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 78 (140)
T cd03017 23 GKPVVLYFYPK----DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY 78 (140)
T ss_pred CCcEEEEEeCC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 344555544 3 3889997544333 3346666666666555565555543
No 239
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.48 E-value=3.1 Score=42.21 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=19.8
Q ss_pred hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
++...|+|+... .||+.|+.....|+++
T Consensus 418 lkGK~vll~FWA----sWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 418 LKGKVVILDFWT----YCCINCMHVLPDLEFL 445 (1057)
T ss_pred cCCCEEEEEEEC----CcChhHHhHhHHHHHH
Confidence 345556666665 6999999988777554
No 240
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=85.47 E-value=3.8 Score=30.54 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 101 PQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
.||+.|.+...-|++ .|+.+--|.++..+.+++.+++. + ..+|.+
T Consensus 39 ~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~-~~~~~~ 90 (149)
T cd03018 39 AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-G-LTFPLL 90 (149)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-C-CCceEe
Confidence 499999966555433 35666666655444555554443 3 245543
No 241
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=85.45 E-value=0.98 Score=33.49 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCeEEEEc-CCCHHHHHHH------HHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 108 TVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 108 ~ak~lL~~~gv~y~~vdV-~~d~~~~~~L------~~~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
.+.+++.+.|++...++- ..+++.++.+ ....|-..+|.++|||+.+-|.++...+
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence 567778888887543331 1223333322 2234788999999999999998765544
No 242
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=85.27 E-value=4.3 Score=30.77 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=25.4
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHH-------HHHHHhcCCCeEEEEcCCCHHHHHHHHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTV-------VQILKSLNAPFETVNILENEMLRQGLKE 137 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~a-------k~lL~~~gv~y~~vdV~~d~~~~~~L~~ 137 (179)
+...++|+...+ .||+.|... .+-+.+.|+.+-.|.++..+++++.+++
T Consensus 29 ~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~ 84 (154)
T PRK09437 29 QGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK 84 (154)
T ss_pred CCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 344555555431 257777543 3333444666666666554555554444
No 243
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=84.42 E-value=4.6 Score=27.76 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhcCCC---eEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327 103 CGFSHTVVQILKSLNAP---FETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY 164 (179)
Q Consensus 103 Cp~C~~ak~lL~~~gv~---y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~ 164 (179)
-+.|-.+..+|+-.+.+ |+.+... |+. ++-...+|.+.. +|+.+.|+.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 46799999999999999 6655542 222 245668999999 999999999998864
No 244
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=84.03 E-value=3.6 Score=31.39 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=14.3
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL 113 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL 113 (179)
.+.|+|+... +|||+|.+...-|
T Consensus 22 Gk~vvv~~~a----s~C~~c~~~~~~l 44 (153)
T TIGR02540 22 GKVSLVVNVA----SECGFTDQNYRAL 44 (153)
T ss_pred CCEEEEEEeC----CCCCchhhhHHHH
Confidence 4445555433 6999998766544
No 245
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=83.84 E-value=3.9 Score=30.44 Aligned_cols=54 Identities=9% Similarity=-0.097 Sum_probs=28.8
Q ss_pred CCcEEEEEeeCCCCCC-CchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327 87 GNKVVLFMKGTKDFPQ-CGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP 145 (179)
...++|+... .| |++|.+-...|.++ |+.+--|+++..... +++.+..+...+|
T Consensus 26 gk~vvl~f~~----~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~-~~~~~~~~~~~~~ 85 (143)
T cd03014 26 GKVKVISVFP----SIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQ-KRWCGAEGVDNVT 85 (143)
T ss_pred CCeEEEEEEc----CCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHH-HHHHHhcCCCCce
Confidence 4456665553 25 79999877666443 555666666543333 3333333333444
No 246
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=83.78 E-value=3 Score=31.82 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCC-------C-HHHHHHHHHhcCCCCcceE
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILE-------N-EMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~-------d-~~~~~~L~~~sg~~tvP~V 147 (179)
...|+|+... .||| |.+-...|+++ |+.+.-+.++. + +++++.+++..| -++|.+
T Consensus 22 Gk~vvl~fwa----twC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~ 91 (152)
T cd00340 22 GKVLLIVNVA----SKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMF 91 (152)
T ss_pred CCEEEEEEEc----CCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceee
Confidence 4456665554 5999 98866666543 33344443321 2 345555554223 367765
No 247
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=83.39 E-value=1.7 Score=33.83 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCeEEEE-cCCCHHHHHHHHH------hcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 107 HTVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~~------~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
..+.+++.+.|++.+.+. ...+++.++.+.+ ..|...+|.++|||+.+-|.|.+..+
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 357788899998754332 2334444433332 23889999999999999898876644
No 248
>PTZ00056 glutathione peroxidase; Provisional
Probab=83.19 E-value=4.4 Score=32.86 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEc
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNI 125 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV 125 (179)
...|+|+... .||++|.+-...|.++ |+.+--+++
T Consensus 39 Gkvvlv~fwA----swC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 39 NKVLMITNSA----SKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCEEEEEEEC----CCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 3445554443 5999998755444333 455555544
No 249
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=82.80 E-value=14 Score=30.06 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
..+.+...+....+..+-++|.-.... .+=.+...+++.|+++ |++...+++.++++..+.|.+. =.||+.|
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a------d~I~l~G 88 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA------DVIYVGG 88 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC------CEEEECC
Confidence 344566667777655555555554222 2335788999999999 9998888876656656666543 3678887
Q ss_pred EEEeecHHHHHHHHcccHHHHHHhh
Q 030327 152 EFFGGCDITVEAYKNGELQELLEKA 176 (179)
Q Consensus 152 ~~IGG~del~~l~~~GeL~~~L~~a 176 (179)
|....+.+..++-.|.++|+++
T Consensus 89 ---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 89 ---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred ---chHHHHHHHHHHcCHHHHHHHH
Confidence 6666666655555677777654
No 250
>PLN02412 probable glutathione peroxidase
Probab=82.72 E-value=5.9 Score=30.99 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=13.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL 113 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL 113 (179)
...|+|+... .||++|.+-..-|
T Consensus 29 gk~vlv~f~a----~~C~~c~~e~~~l 51 (167)
T PLN02412 29 GKVLLIVNVA----SKCGLTDSNYKEL 51 (167)
T ss_pred CCEEEEEEeC----CCCCChHHHHHHH
Confidence 3445554443 5999998644434
No 251
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=81.54 E-value=0.66 Score=40.25 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
.++|-. |+.-.+++|+-++.++|++|+.+||+ ..+.....+.+......+|++.-+...|-..+++.++.+.
T Consensus 27 ~vLyhh-----pysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHH-----PYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeec-----CcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 788888 57778999999999999999999985 3344445667777777899877777777899999998776
No 252
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.81 E-value=3.5 Score=34.84 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=48.6
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC--eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEee----cHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG----CDIT 160 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~--y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG----~del 160 (179)
...|-||.-- .|--|...-+.|++.|.- +..+|-...+. .++++ +.-++|-||+||+.+-+ .+++
T Consensus 10 ~~~VkI~~Hk-----tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~i 80 (265)
T COG5494 10 EMEVKIFTHK-----TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--GVISVPSVFIDGELVYADPVDPEEI 80 (265)
T ss_pred heEEEEEEec-----chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--ceeecceEEEcCeEEEcCCCCHHHH
Confidence 3458889884 899999999999998873 55555433332 22222 45589999999999854 4566
Q ss_pred HHHHH
Q 030327 161 VEAYK 165 (179)
Q Consensus 161 ~~l~~ 165 (179)
..+.+
T Consensus 81 es~~~ 85 (265)
T COG5494 81 ESILS 85 (265)
T ss_pred HHHHc
Confidence 65543
No 253
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=80.20 E-value=6.2 Score=33.25 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=20.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEc
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNI 125 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV 125 (179)
...|+|+... .||+.|..-...|.+ .|+.+.-|+.
T Consensus 99 GK~vvl~FwA----swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 99 GKVLLIVNVA----SKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCeEEEEEEc----CCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3445555554 699999875544433 3566655554
No 254
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.17 E-value=1.3 Score=34.49 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCeEEEE-cCCCHHHHHHHHH------hcCCCCcceEeeCCE-EEeecHHHHHH
Q 030327 108 TVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGE-FFGGCDITVEA 163 (179)
Q Consensus 108 ~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~~------~sg~~tvP~VfIdG~-~IGG~del~~l 163 (179)
.+.+++.+.|++-..++ ..++++.++.+.+ ..|...+|.++|||+ .+-|.+.+-.+
T Consensus 125 vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 125 VLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 47888899999765544 2344555444433 248899999999999 77787765544
No 255
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=79.80 E-value=0.97 Score=33.50 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=22.2
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEc
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNI 125 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV 125 (179)
..|++|+. ++||+|.+....+.+. ++.+..+++
T Consensus 7 ~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFD-----YNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred EEEEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 34666665 7999999887776553 245666565
No 256
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=79.62 E-value=11 Score=27.71 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred cCCcEEEEEeeCCCCCCCch-HHHHHHHHHhc-------C---CCeEEEEcCC---C-HHHHHHHHHhcCCCCcceEe
Q 030327 86 TGNKVVLFMKGTKDFPQCGF-SHTVVQILKSL-------N---APFETVNILE---N-EMLRQGLKEYSSWPTFPQLY 148 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~-C~~ak~lL~~~-------g---v~y~~vdV~~---d-~~~~~~L~~~sg~~tvP~Vf 148 (179)
+...++|+... .||++ |.+....|++. + +.+..|.++. + ..+++.+++. + ..+|.+.
T Consensus 21 ~gk~~vl~f~~----~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~-~-~~~~~l~ 92 (142)
T cd02968 21 KGKPVLVYFGY----THCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF-G-PGWIGLT 92 (142)
T ss_pred CCCEEEEEEEc----CCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh-C-CCcEEEE
Confidence 34455555554 59998 98665555432 2 5555555543 2 3344444443 3 3455443
No 257
>PTZ00256 glutathione peroxidase; Provisional
Probab=79.51 E-value=5.7 Score=31.53 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHh-------cCCCeEEEEcCC-------C-HHHHHHHHHhcCCCCcceE
Q 030327 101 PQCGFSHTVVQILKS-------LNAPFETVNILE-------N-EMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~-------d-~~~~~~L~~~sg~~tvP~V 147 (179)
.|||+|.+-...|++ .|+.+--++++. + +++++.+.+..|. ++|.+
T Consensus 51 twCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~-~fpv~ 111 (183)
T PTZ00256 51 CKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNV-DFPLF 111 (183)
T ss_pred CCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCC-CCCCc
Confidence 599999975554443 355555555421 1 4455555433332 46654
No 258
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=79.41 E-value=6 Score=36.96 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHhhhcC--Cc--EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030327 72 ALTPELKSTLDKVVTG--NK--VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWP 142 (179)
Q Consensus 72 ~~~~~~~~~l~~li~~--~~--Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~ 142 (179)
+++++.++.+++++.. ++ +++|.. +.|.+|.+++++|++. .+.++.+|..++.+..+. +|..
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~----~~v~ 418 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETL----PKIT 418 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhh----cCCC
Confidence 5566666666665554 23 445555 4799999999999885 456777787666554443 3445
Q ss_pred CcceEee
Q 030327 143 TFPQLYI 149 (179)
Q Consensus 143 tvP~VfI 149 (179)
-+|.+.+
T Consensus 419 ~~P~~~i 425 (555)
T TIGR03143 419 KLPTVAL 425 (555)
T ss_pred cCCEEEE
Confidence 6788866
No 259
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=79.36 E-value=7.1 Score=30.41 Aligned_cols=37 Identities=27% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCC
Q 030327 87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILE 127 (179)
Q Consensus 87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~ 127 (179)
...++||.. . .||+.|......|.+ .|+.+..|.++.
T Consensus 29 Gk~vvl~F~~~----~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPL----DFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 345666654 3 389999976655533 456666666544
No 260
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.50 E-value=3.1 Score=31.77 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=25.8
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEE
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV 123 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~v 123 (179)
..+++|+| |.|+-|+.+.++|+++.-+|+.+
T Consensus 3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 3 KTLILFGK-----PLCSVCESISEALKELEDEYDIL 33 (123)
T ss_pred ceEEEeCC-----cccHHHHHHHHHHHHhhccccEE
Confidence 45889999 79999999999998887666533
No 261
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=77.27 E-value=8.7 Score=31.24 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=28.5
Q ss_pred hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHh---cCCCe------EEEEcCCC
Q 030327 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS---LNAPF------ETVNILEN 128 (179)
Q Consensus 84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~---~gv~y------~~vdV~~d 128 (179)
+...-.|+-|..+ ||+.|+.-..+|.+ .|+++ .-||++++
T Consensus 57 l~GKV~lvn~~As-----wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 57 LAGKVRVVHHIAG-----RTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred cCCCEEEEEEEec-----CCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 3333457777776 99999987777655 47787 77887764
No 262
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=75.99 E-value=6 Score=37.63 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHhhhcCCc---EEEEEeeCCCCCCCchHHHHHHHH--------HhcCCCeEEEEcCC-CHHHHHHHHHhcCCCCcceE
Q 030327 80 TLDKVVTGNK---VVLFMKGTKDFPQCGFSHTVVQIL--------KSLNAPFETVNILE-NEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 80 ~l~~li~~~~---Vvlysk~t~~~p~Cp~C~~ak~lL--------~~~gv~y~~vdV~~-d~~~~~~L~~~sg~~tvP~V 147 (179)
+++++.++++ |.+-... .||--|+..++.. +..++-+-..|+.. |++.++.|+++ |.-.+|.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyA----dWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~~ 538 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYA----DWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPTY 538 (569)
T ss_pred HHHHHHHhCCCCcEEEeeeh----hHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCEE
Confidence 5666666655 4443332 4999999887765 22355677788865 57777777765 88888887
Q ss_pred e-eC--CEEEeecHHHHHHHHcccHHHHHHhh
Q 030327 148 Y-IE--GEFFGGCDITVEAYKNGELQELLEKA 176 (179)
Q Consensus 148 f-Id--G~~IGG~del~~l~~~GeL~~~L~~a 176 (179)
. .+ |+..-. +-.....+.+.+.|+++
T Consensus 539 ~ff~~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 539 LFFGPQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred EEECCCCCcCcC---CcceecHHHHHHHHHHh
Confidence 4 43 322211 33333445555555554
No 263
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=74.98 E-value=4.5 Score=34.68 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=47.0
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDITV 161 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del~ 161 (179)
.|||+... +.++-|..+-..|..+ .++|..+....-+ +........+|.| |.+|+.+|.+=.+.
T Consensus 148 ~VVVHiY~----~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 148 WVVVHIYE----PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEEEE-----TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEETTEEEEEECTGG
T ss_pred EEEEEEEe----CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEECCEEEEeEEehH
Confidence 36666665 6888888887777554 4667766654322 1222234568887 66998887653333
Q ss_pred HH----HHcccHHHHHHhhhc
Q 030327 162 EA----YKNGELQELLEKALC 178 (179)
Q Consensus 162 ~l----~~~GeL~~~L~~a~~ 178 (179)
++ +...+|+.+|...|+
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTS
T ss_pred HhcCCCCCHHHHHHHHHHcCC
Confidence 22 233467777877664
No 264
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=74.39 E-value=16 Score=32.61 Aligned_cols=67 Identities=18% Similarity=0.358 Sum_probs=40.4
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----------CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----------APFETVNILENEMLRQGLKEYSSWPTFPQL-- 147 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-- 147 (179)
++.+++.+.+|...-. +.||+|++..+.++.+-- +-+-.||-+.... +...+....+|++
T Consensus 6 ~~~il~s~elvfv~Fy---AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~----ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFY---ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD----IADKYHINKYPTLKV 78 (375)
T ss_pred HHHhhccceEEeeeee---hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH----HhhhhccccCceeee
Confidence 5677777776654332 249999999999996541 1134444443333 3333444456654
Q ss_pred eeCCEEE
Q 030327 148 YIEGEFF 154 (179)
Q Consensus 148 fIdG~~I 154 (179)
|.||+.+
T Consensus 79 frnG~~~ 85 (375)
T KOG0912|consen 79 FRNGEMM 85 (375)
T ss_pred eeccchh
Confidence 8898654
No 265
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=73.64 E-value=16 Score=29.45 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=21.8
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCC
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILE 127 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~ 127 (179)
..++||.. ++.|||.|..-..-| ++.|+.+--+.++.
T Consensus 26 k~vvlf~~---pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSH---PADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEe---cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44555443 235899998654433 44567666666654
No 266
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=73.38 E-value=4.5 Score=30.98 Aligned_cols=52 Identities=8% Similarity=0.124 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCeEEEEc-CCCHHHHHHH------HHhcCCCCcceEeeCCEEEeecH
Q 030327 107 HTVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV-~~d~~~~~~L------~~~sg~~tvP~VfIdG~~IGG~d 158 (179)
..+.+++.+.|++.+.++- ..+.++++.+ ....|...+|.++|||+.+-+-.
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 4677788888886543331 1233332222 22348889999999999875433
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=73.29 E-value=5.8 Score=29.77 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.5
Q ss_pred cCCCCcceEeeCCEEEeecHHHH
Q 030327 139 SSWPTFPQLYIEGEFFGGCDITV 161 (179)
Q Consensus 139 sg~~tvP~VfIdG~~IGG~del~ 161 (179)
.|-..+|.++|||+.+.|...+.
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHH
T ss_pred cCCccccEEEECCEEeCCCCCHH
Confidence 47889999999999998654433
No 268
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=73.11 E-value=21 Score=27.90 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=41.8
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC--CeEEEEcCCCHHHHHHHHHhcCCCC---cceEee-CCEEEeecHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA--PFETVNILENEMLRQGLKEYSSWPT---FPQLYI-EGEFFGGCDI 159 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv--~y~~vdV~~d~~~~~~L~~~sg~~t---vP~VfI-dG~~IGG~de 159 (179)
+....+|+..+ .|++|...+++|.+..- .+...++-. +.-..+.+..|... .=.+++ +|+.+-|.|.
T Consensus 6 ~~p~~vvlyDG-----~C~lC~~~vrfLi~~D~~~~i~f~~~q~--e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 6 KKPDLVVLYDG-----VCPLCDGWVRFLIRRDQGGRIRFAALQS--EPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CCCCEEEEECC-----cchhHHHHHHHHHHhccCCcEEEEeccC--chhhhHHhhcCCChhhhheeeEecCCceEeccHH
Confidence 34445555554 89999999999988754 477766632 22233334444221 223344 5677778776
Q ss_pred HHHH
Q 030327 160 TVEA 163 (179)
Q Consensus 160 l~~l 163 (179)
+.+.
T Consensus 79 ~~~i 82 (137)
T COG3011 79 AIRI 82 (137)
T ss_pred HHHH
Confidence 6654
No 269
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=72.59 E-value=14 Score=28.38 Aligned_cols=63 Identities=13% Similarity=0.313 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcccHHHHHHhh
Q 030327 105 FSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~GeL~~~L~~a 176 (179)
|-+++++.|+++|+.+..+++... ++..+.+.+ .-.||+.| |.-..+.+..++-.|.+.|+++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~~ 65 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIRE------ADAIFLGG---GDTFRLLRQLKETGLDEAIREA 65 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHH------SSEEEE-----S-HHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHh------CCEEEECC---CCHHHHHHHHHhCCHHHHHHHH
Confidence 346889999999999888888652 445555554 33455544 2223345555555677776653
No 270
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=72.07 E-value=4.2 Score=32.96 Aligned_cols=53 Identities=6% Similarity=0.132 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCeEEEEc-CCCHHHHH------HHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 107 HTVVQILKSLNAPFETVNI-LENEMLRQ------GLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV-~~d~~~~~------~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
..+++++.+.|++-+.++- ..++..++ .+.+..|-..+|.++|||+++-+.+.
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEcccc
Confidence 4677888889987544332 22233222 22233588999999999999755443
No 271
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=4.9 Score=35.65 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=35.5
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCC
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNILENEMLRQGLKEYSSWPTFPQLY--IEG 151 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG 151 (179)
...-++.|.. |||++|.+....+.+.. -......|+ ...-..+.+..+...+|.+. -.|
T Consensus 47 ~~~~~v~fya-----pwc~~c~~l~~~~~~~~~~l~~~~~~~~vd--~~~~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 47 DSPWLVEFYA-----PWCGHCKKLAPTYKKLAKALKGKVKIGAVD--CDEHKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred CCceEEEEEC-----CCCcchhhhchHHHHHHHHhcCceEEEEeC--chhhHHHHHhcCCccCcEEEEEcCC
Confidence 3455777777 69999998887776542 122233332 22334555566777888884 455
No 272
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=71.32 E-value=4 Score=38.18 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=20.8
Q ss_pred CCCchHHHHHHHHHhcCCC--------eEEEEcCCC
Q 030327 101 PQCGFSHTVVQILKSLNAP--------FETVNILEN 128 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~gv~--------y~~vdV~~d 128 (179)
|||++|++...++++++-. +..+|...|
T Consensus 394 PWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN 429 (493)
T KOG0190|consen 394 PWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN 429 (493)
T ss_pred cccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc
Confidence 7999999999999887543 445555544
No 273
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.22 E-value=22 Score=29.72 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTF 144 (179)
Q Consensus 72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tv 144 (179)
++++..+..++++-..=.|.+|....-....-++=..++.+|+++ ++.++++|.+.+++..+......|-..+
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPV 89 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCcc
Confidence 456777888888777666777766411112356777899999887 6889999998887776665555554443
No 274
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=69.89 E-value=5.8 Score=30.32 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEc
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNI 125 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV 125 (179)
...|+.|.. +.||+|.++-..+.+. ++.|+.+.+
T Consensus 16 ~~~i~~f~D-----~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 16 KPEVIEFFS-----YGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CcEEEEEEC-----CCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 344666666 6999999887766443 455665554
No 275
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=69.35 E-value=35 Score=26.52 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcc-eEeeC--CEEE
Q 030327 107 HTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFP-QLYIE--GEFF 154 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP-~VfId--G~~I 154 (179)
...++++++++++|..+..+.+.++.+. .+...+| .++|| |+.+
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~~~~~~----~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNGKLGLD----LGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCCchHHh----cCCeeCCeEEEEcCCceEE
Confidence 5567899999999876666665444333 3566789 56664 7644
No 276
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=67.92 E-value=23 Score=28.12 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=22.4
Q ss_pred CCcEEEEEe-eCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCC
Q 030327 87 GNKVVLFMK-GTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILE 127 (179)
Q Consensus 87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~ 127 (179)
...++||.. + .||+.|..-..-| .+.|+.+--|.++.
T Consensus 31 Gk~vvl~F~p~----~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 31 GKWSVFFFYPA----DFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCEEEEEEECC----CcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 445666664 3 3999999754433 44566666666554
No 277
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.56 E-value=16 Score=33.91 Aligned_cols=64 Identities=20% Similarity=0.406 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHhcC--C-CeEEEEcCCCHHHH----HHHHHhcCC--CCcceEee-------CCEEEeecHHHHHHHH
Q 030327 102 QCGFSHTVVQILKSLN--A-PFETVNILENEMLR----QGLKEYSSW--PTFPQLYI-------EGEFFGGCDITVEAYK 165 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~g--v-~y~~vdV~~d~~~~----~~L~~~sg~--~tvP~VfI-------dG~~IGG~del~~l~~ 165 (179)
+|||=.++--+-+.+. + +|...-|...|+.- +.+.+..|| ..-|.|.- .|..+||++|+.++.+
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Confidence 7999888876666653 4 47777777665432 333444565 46799954 7899999999999754
No 278
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=66.22 E-value=23 Score=27.59 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCcEEEEEeeCCCCCC-CchHHHHHHHHHh
Q 030327 87 GNKVVLFMKGTKDFPQ-CGFSHTVVQILKS 115 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~ 115 (179)
...++|+... .| |+.|.+-..-|.+
T Consensus 44 Gk~vvl~f~~----s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 44 GKRKVLNIFP----SIDTGVCATSVRKFNQ 69 (167)
T ss_pred CCEEEEEEEc----CCCCCccHHHHHHHHH
Confidence 3445555553 26 8888876555544
No 279
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=65.69 E-value=22 Score=25.58 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred CHHHHHHHHhhhc----CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEc
Q 030327 74 TPELKSTLDKVVT----GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNI 125 (179)
Q Consensus 74 ~~~~~~~l~~li~----~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV 125 (179)
++++++.++++.+ .-.+++|..+ . ++|..++++|++. .+.+++.+.
T Consensus 3 ~~~~~~qL~~~f~~l~~pV~l~~f~~~-----~-~~~~e~~~ll~e~a~lSdkI~~~~~~~ 57 (94)
T cd02974 3 DANLKQQLKAYLERLENPVELVASLDD-----S-EKSAELLELLEEIASLSDKITLEEDND 57 (94)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCC-----C-cchHHHHHHHHHHHHhCCceEEEEecC
Confidence 3444444544443 3334455553 4 8999999999775 344555444
No 280
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.07 E-value=39 Score=23.91 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCc--hHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCG--FSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp--~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~ 137 (179)
....+++.+....+||+..+ .+. .+..+++.-++.++++.+.+-..-..+.+.|.+
T Consensus 38 ~~~~l~~~i~~aD~VIv~t~-----~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 38 KASRLPSKIKKADLVIVFTD-----YVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred chhHHHHhcCCCCEEEEEeC-----CcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 34457888888888888875 444 478888888888998888775444555555543
No 281
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=64.91 E-value=37 Score=29.08 Aligned_cols=44 Identities=5% Similarity=-0.092 Sum_probs=26.6
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHH-------HHHhcCCCeEEEEcCC
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ-------ILKSLNAPFETVNILE 127 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~-------lL~~~gv~y~~vdV~~ 127 (179)
+.+......+++|..- +.||+.|..-.. -+++.|+.+--+.+|.
T Consensus 92 Lsd~~kgk~vVL~FyP---a~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 92 SSDYFKDSYGLLVFYP---LDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHHcCCCeEEEEEEC---CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4455455567777551 148999987333 3445567666666654
No 282
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=64.63 E-value=50 Score=23.76 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=40.2
Q ss_pred HHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcc-eEeeC--CEEE
Q 030327 80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFP-QLYIE--GEFF 154 (179)
Q Consensus 80 ~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP-~VfId--G~~I 154 (179)
.+.++.+...+.++.-+. -.--..+++++++++++|..+.++.+.+ +....|...+| .+++| |+.+
T Consensus 46 ~l~~l~~~~~~~vv~v~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 46 VLMALARQGRVPIYGINY-----KDNPENALAWLARHGNPYAAVGFDPDGR----VGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred HHHHHHHhcCcEEEEEEC-----CCCHHHHHHHHHhcCCCCceEEECCcch----HHHhcCCCCCCeEEEECCCceEE
Confidence 344444444466665541 2234677889999999987776665544 33445777899 56664 5544
No 283
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=63.61 E-value=7.2 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHH----Hhc----CCCeEEEEcCCC
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQIL----KSL----NAPFETVNILEN 128 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~----gv~y~~vdV~~d 128 (179)
..|++|.. +.||+|.+.-..+ +++ .+.|..+++..+
T Consensus 14 ~~v~~f~d-----~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 14 ITVTEFFD-----FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp EEEEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred eEEEEEEC-----CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34777777 6999999775544 444 466888887544
No 284
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=62.73 E-value=56 Score=24.19 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCc-EEEEEeeCCCCCCCchHH------HHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE-e
Q 030327 77 LKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSH------TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL-Y 148 (179)
Q Consensus 77 ~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~------~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-f 148 (179)
.++.++...++.+ +.||--+.....||.||+ .++++|++. .=+--.|+...+. ..+....+..++|.+ +
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~-fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTR-MLFWACSVAKPEG--YRVSQALRERTYPFLAM 82 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcC-EEEEEEecCChHH--HHHHHHhCCCCCCEEEE
Confidence 3444555555555 666666511122788997 455566542 2122335543332 334444567799998 4
Q ss_pred e
Q 030327 149 I 149 (179)
Q Consensus 149 I 149 (179)
+
T Consensus 83 l 83 (116)
T cd02991 83 I 83 (116)
T ss_pred E
Confidence 5
No 285
>PRK13599 putative peroxiredoxin; Provisional
Probab=61.42 E-value=36 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=21.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCCC
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILEN 128 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~d 128 (179)
...++||+- ++.|||.|..-..-| ++.|+.+--+.++..
T Consensus 28 Gk~vVL~~~---pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 28 GKWFVLFSH---PADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred CCeEEEEEe---CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 334445444 235888888633333 444666666665543
No 286
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=60.86 E-value=77 Score=24.61 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=42.6
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee---CCEEEe--ecHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI---EGEFFG--GCDITVE 162 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI---dG~~IG--G~del~~ 162 (179)
++.++.-+... -=..++++++++++.+..+.+..+ ....+.+..|...+|..|+ +|+.+. |-+++.+
T Consensus 65 ~~~vV~Vs~D~-----~~~~~~~f~~~~~~~~~~~p~~~~--~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~ 136 (146)
T cd03008 65 QLALVYVSMDQ-----SEQQQESFLKDMPKKWLFLPFEDE--FRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILR 136 (146)
T ss_pred CEEEEEEECCC-----CHHHHHHHHHHCCCCceeecccch--HHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHH
Confidence 46666665221 125688999999988766655432 2345666678889999966 677663 4444443
No 287
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=60.37 E-value=11 Score=32.23 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=37.5
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeE------EEEcC------------CCHHHHHHHHHhcCCCC--cceEe
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE------TVNIL------------ENEMLRQGLKEYSSWPT--FPQLY 148 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~------~vdV~------------~d~~~~~~L~~~sg~~t--vP~Vf 148 (179)
-|.||+. .+|.-|-.+-+.|.++--+-. .||.. ++-+.+..+....|..+ .||++
T Consensus 44 VVELfTS-----QGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 44 VVELFTS-----QGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred EEEEeec-----CCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 3788988 499999999999988743311 12221 22333444454455544 59999
Q ss_pred eCCE
Q 030327 149 IEGE 152 (179)
Q Consensus 149 IdG~ 152 (179)
+||+
T Consensus 119 vnGr 122 (261)
T COG5429 119 VNGR 122 (261)
T ss_pred eech
Confidence 9995
No 288
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=60.28 E-value=25 Score=29.17 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=39.3
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--C-CHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--E-NEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~-d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
....+.+|.+. .|+-|......|..-+-++..+-|. . |..+++.-.. ..+|.--|....|
T Consensus 108 ~~~rlalFvkd-----~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~----~~Idp~~V~~~~I 170 (200)
T TIGR03759 108 GGGRLALFVKD-----DCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANR----HQIDPAKVRSRQI 170 (200)
T ss_pred CCCeEEEEeCC-----CChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHH----cCCCHHHeecCee
Confidence 35679999995 9999999888887777777776665 2 3444443332 3455554444444
No 289
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=59.52 E-value=1.1e+02 Score=25.89 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=53.8
Q ss_pred HHHHHhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEE
Q 030327 78 KSTLDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEF 153 (179)
Q Consensus 78 ~~~l~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~ 153 (179)
...+...++.. +|...-....+..+=+|-.++++.|.++|+.+..+++... .++...|.+. =.|+|+|-
T Consensus 21 ~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~------d~IyVgGG- 93 (224)
T COG3340 21 LPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKA------DIIYVGGG- 93 (224)
T ss_pred hHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhc------cEEEECCc-
Confidence 44455544443 4443333345556778999999999999999999998654 3444444432 23444431
Q ss_pred EeecHHHHHHHHcccHHHHHH
Q 030327 154 FGGCDITVEAYKNGELQELLE 174 (179)
Q Consensus 154 IGG~del~~l~~~GeL~~~L~ 174 (179)
-.++=++++.+.|-++-+.+
T Consensus 94 -NTF~LL~~lke~gld~iIr~ 113 (224)
T COG3340 94 -NTFNLLQELKETGLDDIIRE 113 (224)
T ss_pred -hHHHHHHHHHHhCcHHHHHH
Confidence 01344666777776655544
No 290
>PRK13190 putative peroxiredoxin; Provisional
Probab=59.42 E-value=40 Score=27.23 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHHH-------hcCCCeEEEEcCCC
Q 030327 101 PQCGFSHTVVQILK-------SLNAPFETVNILEN 128 (179)
Q Consensus 101 p~Cp~C~~ak~lL~-------~~gv~y~~vdV~~d 128 (179)
.|||.|..-..-|. +.|+.+--+.++..
T Consensus 38 ~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 38 DFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 48888886544443 34666655555543
No 291
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=59.35 E-value=3.1 Score=35.47 Aligned_cols=64 Identities=22% Similarity=0.440 Sum_probs=45.5
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCC
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEG 151 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG 151 (179)
...++...=.+.|.. ||||-|...+..|.+. +|+..++||..++-+.-.+.. ...|+|| .||
T Consensus 34 w~~~l~gewmi~~~a-----p~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~v----taLptIYHvkDG 104 (248)
T KOG0913|consen 34 WKELLTGEWMIEFGA-----PWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLV----TALPTIYHVKDG 104 (248)
T ss_pred hhhhhchHHHHHhcC-----CCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEE----EecceEEEeecc
Confidence 555666665666777 5999999999999664 677899999888776544332 3578884 577
Q ss_pred EE
Q 030327 152 EF 153 (179)
Q Consensus 152 ~~ 153 (179)
++
T Consensus 105 eF 106 (248)
T KOG0913|consen 105 EF 106 (248)
T ss_pred cc
Confidence 43
No 292
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=57.82 E-value=39 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=18.6
Q ss_pred CcEEEEEe-eCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCC
Q 030327 88 NKVVLFMK-GTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILE 127 (179)
Q Consensus 88 ~~Vvlysk-~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~ 127 (179)
..++||.. . .||+.|..-..-| .+.|+.+--+.++.
T Consensus 32 k~vvL~F~P~----~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 32 RWSVFFFYPA----DFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CeEEEEEECC----CCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 34555544 2 4788888643333 33455555555443
No 293
>PRK13189 peroxiredoxin; Provisional
Probab=57.76 E-value=44 Score=27.56 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=4.7
Q ss_pred CCCchHHH
Q 030327 101 PQCGFSHT 108 (179)
Q Consensus 101 p~Cp~C~~ 108 (179)
.||+.|..
T Consensus 46 ~fcpvC~t 53 (222)
T PRK13189 46 DFTPVCTT 53 (222)
T ss_pred CCCCCCHH
Confidence 36666664
No 294
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.44 E-value=24 Score=31.19 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=17.9
Q ss_pred hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
.+...++.|.. |||++|++....+.+.
T Consensus 161 ~~~~~lv~f~a-----Pwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 161 SDADWLVEFYA-----PWCGHCKKLAPEWEKL 187 (383)
T ss_pred cCcceEEEEec-----cccHHhhhcChHHHHH
Confidence 33444666644 7999999886655443
No 295
>PRK15000 peroxidase; Provisional
Probab=56.11 E-value=61 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=12.0
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQ 111 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~ 111 (179)
..+.++||.... -+|+.|..-..
T Consensus 33 ~gk~vvL~F~p~---~~t~vC~~El~ 55 (200)
T PRK15000 33 NGKTTVLFFWPM---DFTFVCPSELI 55 (200)
T ss_pred CCCEEEEEEECC---CCCCCCHHHHH
Confidence 444566666531 25677765333
No 296
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=56.08 E-value=22 Score=27.02 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCCchHH-----------HHHHHHHhcCCC--eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 101 PQCGFSH-----------TVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 101 p~Cp~C~-----------~ak~lL~~~gv~--y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
..|+.|. +++..|..+|+. ++++.+++.+..++. -.-|.|.|||+.|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEeh
Confidence 4688776 455567778876 677777654443333 3689999999876
No 297
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=55.59 E-value=15 Score=33.77 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHHh
Q 030327 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEY 138 (179)
Q Consensus 75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~~ 138 (179)
..+-..+..+...+.||+=...-..-..|-||+-+++.|+..|-+.+.+++... ++..+.|-..
T Consensus 204 N~lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~ltSh 268 (583)
T KOG2454|consen 204 NILGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEALTSH 268 (583)
T ss_pred hhhhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhHhhcC
Confidence 344566788888999888655422225799999999999999999888886432 4444444433
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=55.25 E-value=31 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCHHHHHHHHhhhcC----CcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 73 LTPELKSTLDKVVTG----NKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 73 ~~~~~~~~l~~li~~----~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
+++++++.++++++. =.+++|.. .|++|.+++++|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 2 LDANLKTQLKQYLELLERPIELVASLD------DSEKSAELKELLEEI 43 (517)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeC------CCchHHHHHHHHHHH
Confidence 445555555555443 33445544 699999999999886
No 299
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=54.54 E-value=1.3e+02 Score=25.25 Aligned_cols=89 Identities=9% Similarity=0.179 Sum_probs=51.2
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCC-CCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKD-FPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~-~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I 154 (179)
-..+.+.+++..++-++|.-.... ..+=.|..++++.|+++|++...+++.++ ..+.|.+ .=.|||.|
T Consensus 19 ~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d--~~~~l~~------ad~I~v~G--- 87 (233)
T PRK05282 19 HALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD--PVAAIEN------AEAIFVGG--- 87 (233)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh--hHHHHhc------CCEEEECC---
Confidence 445666766666665666654221 22345789999999999999887777543 2334432 22455544
Q ss_pred eecHHHHHHHHcccHHHHHHh
Q 030327 155 GGCDITVEAYKNGELQELLEK 175 (179)
Q Consensus 155 GG~del~~l~~~GeL~~~L~~ 175 (179)
|..-.+.+..+.-.|.+.|++
T Consensus 88 Gnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 88 GNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred ccHHHHHHHHHHCCcHHHHHH
Confidence 222334444445456666654
No 300
>PRK13191 putative peroxiredoxin; Provisional
Probab=54.26 E-value=56 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCCCH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILENE 129 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~d~ 129 (179)
...++||.. ++.||+.|..-..-| ++.|+.+--+.++...
T Consensus 33 GK~vvLff~---pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 33 GRWFVLFSH---PGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred CCcEEEEEe---CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 334555433 125888888644444 3446666666665543
No 301
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=54.04 E-value=56 Score=26.01 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHh----------------------cCCCCcceE--eeCCEEE
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEY----------------------SSWPTFPQL--YIEGEFF 154 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~----------------------sg~~tvP~V--fIdG~~I 154 (179)
.=+.++++...|+++|++|+..=...+ +++.+.+++. .+..++|+| -++....
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKAL 89 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCC
Confidence 457899999999999999766544433 2333333321 135677887 3455567
Q ss_pred eecHHHHHHHH
Q 030327 155 GGCDITVEAYK 165 (179)
Q Consensus 155 GG~del~~l~~ 165 (179)
+|.|.+..+.+
T Consensus 90 ~G~daLlS~vq 100 (156)
T TIGR01162 90 SGLDSLLSIVQ 100 (156)
T ss_pred CCHHHHHHHhc
Confidence 88888887766
No 302
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=54.00 E-value=42 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCchHHHH-HHHHHhcCCCeEEEEcCC
Q 030327 102 QCGFSHTV-VQILKSLNAPFETVNILE 127 (179)
Q Consensus 102 ~Cp~C~~a-k~lL~~~gv~y~~vdV~~ 127 (179)
.|-.|..+ +++|.+.|++...+.+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 78888865 569999999988888754
No 303
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=53.75 E-value=72 Score=24.51 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHH--------HHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcCC-CCcc
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTV--------VQILKSLNAP-FETVNILENEMLRQGLKEYSSW-PTFP 145 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~a--------k~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg~-~tvP 145 (179)
+.++.....++||..- .-+||.|..- .+-|++.|+. +--+..+.... .+++.+..+. ..+|
T Consensus 23 L~~~~~gk~vvl~fyP---~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~ 93 (155)
T cd03013 23 LSELFKGKKVVIFGVP---GAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV-MKAWGKALGAKDKIR 93 (155)
T ss_pred HHHHhCCCcEEEEEeC---CCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH-HHHHHHhhCCCCcEE
Confidence 4444445566666653 2468888764 3344555663 65555554444 3434443333 2455
No 304
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=53.71 E-value=1e+02 Score=27.12 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327 102 QCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~ 164 (179)
+|+.|.+++-+|+.+. +.|.-+||..+ .++....++ ....+|.|-+.| .+|.+++...+.
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~-~L~~a~~~L-~~~~~p~l~v~~-l~gdy~~~l~~l 148 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVSRS-ELQRTLAEL-PLGNFSHVRCAG-LLGTYDDGLAWL 148 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECCHH-HHHHHHHhh-hhccCCCeEEEE-EEecHHHHHhhc
Confidence 7999999999987762 44666666432 233333332 223578777777 567777665543
No 305
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=53.21 E-value=21 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcC--CCCcceEeeCC
Q 030327 102 QCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSS--WPTFPQLYIEG 151 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg--~~tvP~VfIdG 151 (179)
.|++|..+--+|... .++++.|+. +.=|+.+.+..| .-+.|++..++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f---~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDF---PRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCC---CCchHHHHHHhChhccCCCEEEeCC
Confidence 599999999999775 466777776 344455555555 45789987755
No 306
>PLN02790 transketolase
Probab=52.19 E-value=38 Score=32.66 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=53.2
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC----HHHHHHHHHhcCCCCcceEeeCCEEEeecHHH---
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN----EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT--- 160 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d----~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del--- 160 (179)
.+|+|...+ .....|.++.+.|++.|+....||+..- .+...+..+..+...-+.|.+.....+|+...
T Consensus 541 ~dv~iia~G----~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~ 616 (654)
T PLN02790 541 PDLILIGTG----SELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGS 616 (654)
T ss_pred CCEEEEEcC----HHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCC
Confidence 568888887 4677899999999999999999997432 22212222222233334555554444555432
Q ss_pred -------HHHHHcccHHHHHHhhh
Q 030327 161 -------VEAYKNGELQELLEKAL 177 (179)
Q Consensus 161 -------~~l~~~GeL~~~L~~a~ 177 (179)
...-.+|..+++++..|
T Consensus 617 ~~~~igvd~Fg~sg~~~~l~~~~G 640 (654)
T PLN02790 617 KGKVIGVDRFGASAPAGILYKEFG 640 (654)
T ss_pred CceEEEeCCCcCcCCHHHHHHHhC
Confidence 12445677777777655
No 307
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=52.15 E-value=52 Score=26.47 Aligned_cols=8 Identities=25% Similarity=0.933 Sum_probs=6.3
Q ss_pred CCCchHHH
Q 030327 101 PQCGFSHT 108 (179)
Q Consensus 101 p~Cp~C~~ 108 (179)
.||++|..
T Consensus 35 S~C~~~~q 42 (183)
T PRK10606 35 SKCGLTPQ 42 (183)
T ss_pred CCCCCcHH
Confidence 49999974
No 308
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.58 E-value=18 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHhcCCCeEEEE
Q 030327 102 QCGFSHTVVQILKSLNAPFETVN 124 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vd 124 (179)
.=+|++++.++|+++|+.|+.+-
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeec
Confidence 45799999999999999998764
No 309
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=50.75 E-value=35 Score=29.06 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCCcceE--eeCCEEEeecHHH----HHHHHcccHHHHHHhhh
Q 030327 141 WPTFPQL--YIEGEFFGGCDIT----VEAYKNGELQELLEKAL 177 (179)
Q Consensus 141 ~~tvP~V--fIdG~~IGG~del----~~l~~~GeL~~~L~~a~ 177 (179)
...+|.+ |-+|+.||.+-.+ -+-+-.|+|...|..-|
T Consensus 209 ~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred ccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 3456665 7799999998544 44456688888887644
No 310
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=50.51 E-value=42 Score=27.99 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=49.0
Q ss_pred HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC--eEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEE
Q 030327 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEF 153 (179)
Q Consensus 78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~--y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~ 153 (179)
.+.++...++.+||+-..- +++-.|..-.+=.++|....+. |-.+|....|-+-. ..+-..+|.| |.||+.
T Consensus 75 kdf~~~~~kS~kVVcHFY~-~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~----kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYR-PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVT----KLNIKVLPTVALFKNGKT 149 (211)
T ss_pred HHHHHHhhcCceEEEEEEc-CCCcceehHHHHHHHHHHhcccceEEEEecccCceeee----eeeeeEeeeEEEEEcCEE
Confidence 4556666677776654442 3445688878888888887664 66666655554433 3455679988 888854
Q ss_pred ---EeecHHH
Q 030327 154 ---FGGCDIT 160 (179)
Q Consensus 154 ---IGG~del 160 (179)
|-|+++|
T Consensus 150 ~D~iVGF~dL 159 (211)
T KOG1672|consen 150 VDYVVGFTDL 159 (211)
T ss_pred EEEEeeHhhc
Confidence 3455543
No 311
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=49.81 E-value=69 Score=25.58 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=19.6
Q ss_pred CcEEEEEeeCCCCCCCchHHHH-------HHHHHhcCCCeEEEEcCCC
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTV-------VQILKSLNAPFETVNILEN 128 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~a-------k~lL~~~gv~y~~vdV~~d 128 (179)
..++||..... +|+.|... .+-|.+.|+.+.-|.++..
T Consensus 37 k~~lL~F~p~~---~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 37 KWVVLFFYPLD---FTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CEEEEEEEcCC---CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 34555555322 45555542 2233445777777776644
No 312
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=49.24 E-value=17 Score=35.12 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC----CCHHHHHHHHHhcCCCCcceEeeCCEEEeecH-HHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL----ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD-ITV 161 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~----~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d-el~ 161 (179)
..+|+|.+.+ .....|.+|.+.|++.|+..+.+|+. -|.+....+.+. .--.|.+.+..+||+. ++.
T Consensus 544 G~dvtIva~G----~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~----~~~vVt~Ee~~~GG~Gs~Va 615 (641)
T PLN02234 544 GERVALLGYG----SAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS----HEVLITVEEGSIGGFGSHVV 615 (641)
T ss_pred CCCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh----CCEEEEECCCCCCcHHHHHH
Confidence 4578888887 46778999999999999999999974 244443444332 1224555555569984 455
Q ss_pred H-HHHcccHHHHH
Q 030327 162 E-AYKNGELQELL 173 (179)
Q Consensus 162 ~-l~~~GeL~~~L 173 (179)
+ +.++|.+++.|
T Consensus 616 ~~l~e~~~~~~~~ 628 (641)
T PLN02234 616 QFLALDGLLDGKL 628 (641)
T ss_pred HHHHHcCCCCCCc
Confidence 4 44555455443
No 313
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=46.28 E-value=19 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=11.2
Q ss_pred EeeCCEEEeecHH
Q 030327 147 LYIEGEFFGGCDI 159 (179)
Q Consensus 147 VfIdG~~IGG~de 159 (179)
||+||.++|=.++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999997765
No 314
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=46.17 E-value=1e+02 Score=21.56 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327 78 KSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (179)
Q Consensus 78 ~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~ 138 (179)
...+.+.. ...++++|.. ....+..+.+.|.+.+.++..+.=..++..+..+.+.
T Consensus 18 ~~~i~~~~~~~~~~lvf~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (131)
T cd00079 18 LELLKEHLKKGGKVLIFCP------SKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKD 73 (131)
T ss_pred HHHHHhcccCCCcEEEEeC------cHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence 33344433 3567888888 4678999999999877777766654445555544443
No 315
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=45.48 E-value=1.6e+02 Score=23.60 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC---CCHHHHHHHHHhcCCCCcceEeeCC
Q 030327 76 ELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL---ENEMLRQGLKEYSSWPTFPQLYIEG 151 (179)
Q Consensus 76 ~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~---~d~~~~~~L~~~sg~~tvP~VfIdG 151 (179)
.++..++... ...+|++..... ...+.++....+.++++|+....+.+. .++++.+.|.+ .-.||+.|
T Consensus 17 ~~~~~~~~~~~~~~~i~~iptA~--~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~~G 88 (210)
T cd03129 17 ILQDFLARAGGAGARVLFIPTAS--GDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFVGG 88 (210)
T ss_pred HHHHHHHHcCCCCCeEEEEeCCC--CChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEEcC
Confidence 3445555554 344454444432 235788999999999999998777764 34666666664 34566665
Q ss_pred EEEeecHHHHH-HHHcccHHHHHHh
Q 030327 152 EFFGGCDITVE-AYKNGELQELLEK 175 (179)
Q Consensus 152 ~~IGG~del~~-l~~~GeL~~~L~~ 175 (179)
|.-..+.+ +.+.+-++.+++.
T Consensus 89 ---G~~~~~~~~l~~t~~~~~i~~~ 110 (210)
T cd03129 89 ---GNQLRLLSVLRETPLLDAILKR 110 (210)
T ss_pred ---CcHHHHHHHHHhCChHHHHHHH
Confidence 33333333 4444556665554
No 316
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.69 E-value=1.8e+02 Score=23.71 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHHhcCCC-eEEEEcC-----CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcccHHHHHHh
Q 030327 102 QCGFSHTVVQILKSLNAP-FETVNIL-----ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~-y~~vdV~-----~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~GeL~~~L~~ 175 (179)
.+.++++..+.|.++|+. .+.++++ .++++.+.+.+. -.||+.| |.-..+.+..++-.|.+.|++
T Consensus 42 ~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~a------d~I~~~G---G~~~~~~~~l~~t~l~~~l~~ 112 (217)
T cd03145 42 PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDA------DGIFFTG---GDQLRITSALGGTPLLDALRK 112 (217)
T ss_pred hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhC------CEEEEeC---CcHHHHHHHHcCChHHHHHHH
Confidence 478899999999999985 6777776 356666666643 3455444 122234444444455555554
No 317
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=43.68 E-value=92 Score=23.15 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=49.3
Q ss_pred HHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEE
Q 030327 81 LDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEF 153 (179)
Q Consensus 81 l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~ 153 (179)
++..++ ....++|..+-|. .++-+..+--+|-++ +-.+..--+. ++...+|...+|...+|.+ |-+|++
T Consensus 19 ld~~l~~~~~~vlf~~gDp~--r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 19 LDAFLAAPGDAVLFFAGDPA--RFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGRY 94 (107)
T ss_dssp HHHHHHCCSCEEEEESS-TT--TSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTEE
T ss_pred HHHHHhCCCcEEEEECCCCC--cCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCEE
Confidence 333333 4557777776332 455555555566554 3334433343 6777888888898889987 669999
Q ss_pred EeecHHHHHH
Q 030327 154 FGGCDITVEA 163 (179)
Q Consensus 154 IGG~del~~l 163 (179)
+|-...++.+
T Consensus 95 lG~i~gi~dW 104 (107)
T PF07449_consen 95 LGAIEGIRDW 104 (107)
T ss_dssp EEEEESSSTH
T ss_pred EEEecCeecc
Confidence 9987766554
No 318
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.57 E-value=73 Score=24.80 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCeEEEEc-CCC----HHHHHHHH--HhcCCCCcceEeeCCEE-EeecHHH
Q 030327 107 HTVVQILKSLNAPFETVNI-LEN----EMLRQGLK--EYSSWPTFPQLYIEGEF-FGGCDIT 160 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV-~~d----~~~~~~L~--~~sg~~tvP~VfIdG~~-IGG~del 160 (179)
..+.+++.+.|++-..+.- .++ ..+++... ...|...+|.++|||++ +.|....
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCH
Confidence 3577788888987543221 112 22222222 22488899999999874 5666533
No 319
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=42.97 E-value=33 Score=25.14 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=43.5
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC----CCHH-HHHHHHHhcCCCCcceE-eeCCEEEeecHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL----ENEM-LRQGLKEYSSWPTFPQL-YIEGEFFGGCDI 159 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~----~d~~-~~~~L~~~sg~~tvP~V-fIdG~~IGG~de 159 (179)
....|+|++.+ .....|.++.+.|++.|++...+|+. -|.+ +.+.+.+. -..+ +-++...||+..
T Consensus 8 ~g~di~iia~G----~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~-----~~vvvvee~~~~gg~g~ 78 (124)
T PF02780_consen 8 EGADITIIAYG----SMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT-----GRVVVVEEHYKIGGLGS 78 (124)
T ss_dssp SSSSEEEEEET----THHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH-----HHHHHSETCESEEEEHS
T ss_pred CCCCEEEEeeh----HHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh-----ccccccccccccccHHH
Confidence 35679999998 57888999999999999999888862 2433 33323332 2233 335555777753
No 320
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=41.95 E-value=88 Score=23.75 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHH------------HHHHHHHhcCCCeEEEEcC
Q 030327 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSH------------TVVQILKSLNAPFETVNIL 126 (179)
Q Consensus 73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~------------~ak~lL~~~gv~y~~vdV~ 126 (179)
..+++.+.++++.+..-.++|..+. ...... ...+||++++++|..+-+-
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR----~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSR----NMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCC----CchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 4456666677765554444444431 222233 7789999999999888773
No 321
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=41.77 E-value=1.6e+02 Score=23.49 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC------------eEEEEcCCC--HHHHHHHHHhcC
Q 030327 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP------------FETVNILEN--EMLRQGLKEYSS 140 (179)
Q Consensus 75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~------------y~~vdV~~d--~~~~~~L~~~sg 140 (179)
+++...++++.. ..+.|-..+ .+..=..|+++|+.++++ |...+|-.+ ....+.+.+.+|
T Consensus 48 pdv~~iL~~L~~-~gv~lavAS-----Rt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tg 121 (169)
T PF12689_consen 48 PDVPEILQELKE-RGVKLAVAS-----RTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTG 121 (169)
T ss_dssp TTHHHHHHHHHH-CT--EEEEE-------S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHH-CCCEEEEEE-----CCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcC
Confidence 455666666655 444444444 233338999999998887 445555433 334566777778
Q ss_pred CCCcceEeeCCEE
Q 030327 141 WPTFPQLYIEGEF 153 (179)
Q Consensus 141 ~~tvP~VfIdG~~ 153 (179)
-+-==++|+|++.
T Consensus 122 I~y~eMlFFDDe~ 134 (169)
T PF12689_consen 122 IPYEEMLFFDDES 134 (169)
T ss_dssp --GGGEEEEES-H
T ss_pred CChhHEEEecCch
Confidence 7777789999873
No 322
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=41.66 E-value=1.1e+02 Score=27.18 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=46.3
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC----CHHHHHHHHHhcCCCCcceEeeCCEEEeecHH-H
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI-T 160 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~----d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de-l 160 (179)
+..+|+|.+.+ .....|.++.+.|++.|++.+.+|+.. |.+.-..+.+.++ .+ .++-++...||+-+ +
T Consensus 227 ~G~dvtIia~G----~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~--~v-vtvEE~~~~GGlGs~V 299 (356)
T PLN02683 227 EGKDVTIVAFS----KMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN--RL-VTVEEGWPQHGVGAEI 299 (356)
T ss_pred cCCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC--eE-EEEeCCCcCCCHHHHH
Confidence 34578888888 577889999999999999999999843 4443333333332 22 33335555688753 4
Q ss_pred HHH
Q 030327 161 VEA 163 (179)
Q Consensus 161 ~~l 163 (179)
.+.
T Consensus 300 a~~ 302 (356)
T PLN02683 300 CAS 302 (356)
T ss_pred HHH
Confidence 443
No 323
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=41.51 E-value=1.1e+02 Score=28.47 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=31.6
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL 126 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~ 126 (179)
....|+|.+.+ .....|.++.+.|++.|++.+.+|+.
T Consensus 339 ~G~DvtIva~G----~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 339 EGKDVTIVSFS----IGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred cCCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 34578888887 57889999999999999999999984
No 324
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=41.11 E-value=97 Score=24.19 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=35.7
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCC-----------CcceEeeCCE
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP-----------TFPQLYIEGE 152 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~-----------tvP~VfIdG~ 152 (179)
.|++++-|.++...+..-.++.+.+++.||....+=+.. .....|.++.+.+ -.|++|+|++
T Consensus 112 ~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 112 FLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred EEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 356666653322234445666777889999988887754 1223344443211 2578888775
No 325
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=40.18 E-value=1e+02 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=30.1
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCe
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF 120 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y 120 (179)
....+.+++.|+...++-+.-..+.++|++.|++.
T Consensus 27 ~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 27 LGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred ccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 56789999999875578889999999999999873
No 326
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=38.91 E-value=1.7e+02 Score=26.22 Aligned_cols=67 Identities=7% Similarity=0.159 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcC----CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCC
Q 030327 75 PELKSTLDKVVTG----NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWP 142 (179)
Q Consensus 75 ~~~~~~l~~li~~----~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~ 142 (179)
++++++++++.+. ..+.+..-+-.. .---|-+.-++..++.|+.++.+++.++ +++.+.+.++..-+
T Consensus 70 ~~lk~~v~~l~~~~g~~P~LaiIlvGddp-aS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~ 143 (345)
T PLN02897 70 TKIASEVRKMKKAVGKVPGLAVVLVGQQR-DSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDT 143 (345)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEeCCCh-HHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455555554332 445444444111 1235666777788899999999999876 56777777775433
No 327
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=38.40 E-value=53 Score=24.47 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHH---Hh-cCCCCcceEeeCCEEEeecHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLK---EY-SSWPTFPQLYIEGEFFGGCDITV 161 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~---~~-sg~~tvP~VfIdG~~IGG~del~ 161 (179)
..+|+|.-.+ .|.|..+++. .++.|.. .-.+|...++. ...+. .. ....++|.++|..+ ..+.++
T Consensus 34 ~g~I~Lv~RG-----~C~F~~K~~~-Aq~aGA~avII~n~~~~~~-~~~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~ 103 (118)
T cd02127 34 NGNIALIERG-----GCSFLTKAIN-AQKAGALAVIITDVNNDSD-EYYVEMIQDDSSRRADIPAAFLLGK---NGYMIR 103 (118)
T ss_pred CCeEEEEECC-----CCCHHHHHHH-HHHCCCcEEEEEECCCCcc-ccceEecCCCCCCCceEEEEEecHH---HHHHHH
Confidence 4678888887 8999999887 5666766 44455543321 11111 10 12347899998764 234455
Q ss_pred HHHHcccH
Q 030327 162 EAYKNGEL 169 (179)
Q Consensus 162 ~l~~~GeL 169 (179)
+..+.|..
T Consensus 104 ~~l~~g~~ 111 (118)
T cd02127 104 KTLERLGL 111 (118)
T ss_pred HHHHcCCc
Confidence 55555543
No 328
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=38.23 E-value=2.3e+02 Score=23.53 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCC-chHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC-EE
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQC-GFSHTVVQILKSLNAP-FETVNILENEMLRQGLKEYSSWPTFPQLYIEG-EF 153 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~C-p~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG-~~ 153 (179)
++...+++-+.+--|.|.+- .+..++ .+...+.+++++.++. +...+. .+..+.+.|.++.....+|..+++. .|
T Consensus 51 MRhfa~~L~~~G~~V~Y~~~-~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P-~d~~l~~~l~~~~~~~~i~~~~~~~~~F 128 (224)
T PF04244_consen 51 MRHFADELRAKGFRVHYIEL-DDPENTQSFEDALARALKQHGIDRLHVMEP-GDYRLEQRLESLAQQLGIPLEVLEDPHF 128 (224)
T ss_dssp HHHHHHHHHHTT--EEEE-T-T-TT--SSHHHHHHHHHHHH----EEEE---S-HHHHHHHHH----SSS-EEEE--TTS
T ss_pred HHHHHHHHHhCCCEEEEEeC-CCccccccHHHHHHHHHHHcCCCEEEEECC-CCHHHHHHHHhhhcccCCceEEeCCCCc
Confidence 45556667777777778774 333344 6788999999999875 444444 5677888888877777788776655 57
Q ss_pred EeecHHHHHHHHc
Q 030327 154 FGGCDITVEAYKN 166 (179)
Q Consensus 154 IGG~del~~l~~~ 166 (179)
+..-+++.++.+.
T Consensus 129 l~s~~~f~~~~~~ 141 (224)
T PF04244_consen 129 LTSREEFAEWFEG 141 (224)
T ss_dssp SS-HHHHHHHHTT
T ss_pred cCCHHHHHHHHcc
Confidence 7888888888764
No 329
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.85 E-value=57 Score=25.74 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=29.3
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHh
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEY 138 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~ 138 (179)
+|.|.+-++. .=+++++++..|+++|++|+..-+..+ +++.+.++++
T Consensus 2 ~V~Ii~gs~S---D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 2 KVAIIMGSTS---DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEEESSGG---GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred eEEEEeCCHH---HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 4666666643 356899999999999999976444432 3344555443
No 330
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=37.48 E-value=27 Score=23.82 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=20.8
Q ss_pred cCCCCcceEeeCCEEEeecHHHH-HHHHcccHHHHHHhhh
Q 030327 139 SSWPTFPQLYIEGEFFGGCDITV-EAYKNGELQELLEKAL 177 (179)
Q Consensus 139 sg~~tvP~VfIdG~~IGG~del~-~l~~~GeL~~~L~~a~ 177 (179)
.|...+|.| |||.|-+. ..-++-+|+++|+.++
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e~ 46 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQEM 46 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHHHH
Confidence 366667754 67776433 2344568999987664
No 331
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=37.20 E-value=60 Score=23.86 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=38.2
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
..+|+|...+ .|.|..+++. ..+.|.. .-.+|-.+.......+.......++|.++|..+ .-+.++++.+
T Consensus 43 ~GkIvLv~rg-----~c~f~~K~~~-A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~---~G~~l~~~l~ 113 (122)
T cd04816 43 KGAIVLVDRG-----GCPFADKQKV-AAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKA---AGAALRRRLG 113 (122)
T ss_pred CCeEEEEECC-----CCCHHHHHHH-HHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHH---HHHHHHHHHc
Confidence 5778888886 8999988776 4555665 444443221110001110012346888888753 1234444444
Q ss_pred cc
Q 030327 166 NG 167 (179)
Q Consensus 166 ~G 167 (179)
.|
T Consensus 114 ~g 115 (122)
T cd04816 114 AG 115 (122)
T ss_pred CC
Confidence 43
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.90 E-value=60 Score=29.93 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=28.8
Q ss_pred CCHHHHHHHHhhhcC--CcE--EEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEc
Q 030327 73 LTPELKSTLDKVVTG--NKV--VLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNI 125 (179)
Q Consensus 73 ~~~~~~~~l~~li~~--~~V--vlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV 125 (179)
+++++++.++++++. ++| ++|.. .|++|.+++++|++. ++.++..+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~s~ki~~~~~~~ 57 (515)
T TIGR03140 2 LDQSLLAQLKSYLASLENPVTLVLSAG------SHEKSKELLELLDEIASLSDKISLTQNTA 57 (515)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEEeC------CCchhHHHHHHHHHHHHhCCCeEEEEecC
Confidence 445555555555443 334 34444 589999999999886 344555443
No 333
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.96 E-value=37 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=21.7
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHH----Hhc-CCCeEEEEc
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQIL----KSL-NAPFETVNI 125 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~-gv~y~~vdV 125 (179)
+|++|.. ..||||-.+...| ++. +++++..-+
T Consensus 1 ~i~~~~D-----~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFD-----FICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEB-----TTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 3667777 5999998776655 444 676666554
No 334
>PTZ00494 tuzin-like protein; Provisional
Probab=34.40 E-value=94 Score=29.67 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=41.8
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHHhcCCCCcceEeeCCE
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
++|++|+-. -+|+-|.-.+..+.+.+++-..+||-.. +.++--+|.+ .+|.|-+-|.
T Consensus 395 PRIvV~TG~----~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKAL----gV~nve~CGD 452 (664)
T PTZ00494 395 PRIVALAGG----SGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRAL----GVSNVEVCGD 452 (664)
T ss_pred CcEEEEecC----CCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHh----CCCChhhhcc
Confidence 569999886 5999999999999999999999999543 3344444544 4666655543
No 335
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=34.13 E-value=1.2e+02 Score=26.15 Aligned_cols=72 Identities=21% Similarity=0.109 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCCHH--HHHHHHHhcCCCCcceE-----------eeCCEEEeecHHHHHHHHccc
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILENEM--LRQGLKEYSSWPTFPQL-----------YIEGEFFGGCDITVEAYKNGE 168 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~--~~~~L~~~sg~~tvP~V-----------fIdG~~IGG~del~~l~~~Ge 168 (179)
|-.-|+.+..++++-|++-..++...+.. ..++|.++ .+|++ ..+|-.+-| .++..+.+-=|
T Consensus 115 ~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~er----gipV~gHvGLTPQ~v~~lGGyk~QG-r~~~~a~~l~E 189 (306)
T KOG2949|consen 115 WSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVER----GIPVMGHVGLTPQAVSVLGGYKPQG-RNIASAVKLVE 189 (306)
T ss_pred HHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHc----CCceeeeccCChhhhhhccCcCccc-hhHHHHHHHHH
Confidence 77789999999999999999999877654 34566655 34433 335555555 34444433333
Q ss_pred HHHHHHhhhc
Q 030327 169 LQELLEKALC 178 (179)
Q Consensus 169 L~~~L~~a~~ 178 (179)
-...|+++||
T Consensus 190 tAmqLqk~Gc 199 (306)
T KOG2949|consen 190 TAMQLQKAGC 199 (306)
T ss_pred HHHHHHhccc
Confidence 3445777776
No 336
>PRK06852 aldolase; Validated
Probab=33.67 E-value=1.8e+02 Score=25.59 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcC-----CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327 106 SHTVVQILKSLNAPFETVNIL-----ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV~-----~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l 163 (179)
-.-+.++-.++|.++..++.. .+++...++.+. ..-+|+|+-+|... +.+++.++
T Consensus 190 ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~--~g~vpVviaGG~k~-~~~e~L~~ 249 (304)
T PRK06852 190 IAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLA--AGRTKVVCAGGSST-DPEEFLKQ 249 (304)
T ss_pred HHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHh--CCCCcEEEeCCCCC-CHHHHHHH
Confidence 444556778889999888886 555554554442 32479999999988 65666655
No 337
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.35 E-value=1.4e+02 Score=21.30 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=41.5
Q ss_pred eeeccccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHHhcCCCCc
Q 030327 66 FRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTF 144 (179)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~~sg~~tv 144 (179)
+.|.+++.+.-+..++++.++.+.+-+-.. .|+... +. +..-+|..+=+.-. ....+.+++......+
T Consensus 8 l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~------a~~~~~-~~----~~~~~~Dvill~pqi~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 8 LLCAAGMSTSLLVNKMNKAAEEYGVPVKIA------AGSYGA-AG----EKLDDADVVLLAPQVAYMLPDLKKETDKKGI 76 (95)
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCcEEEE------EecHHH-HH----hhcCCCCEEEECchHHHHHHHHHHHhhhcCC
Confidence 455555555555566666666655543333 233332 11 11112322222111 2234556666566679
Q ss_pred ceEeeCCEEEeecH
Q 030327 145 PQLYIEGEFFGGCD 158 (179)
Q Consensus 145 P~VfIdG~~IGG~d 158 (179)
|...|+.+..|-.|
T Consensus 77 pv~~I~~~~Y~~md 90 (95)
T TIGR00853 77 PVEVINGAQYGKLT 90 (95)
T ss_pred CEEEeChhhcccCC
Confidence 99999998777554
No 338
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=33.26 E-value=90 Score=30.03 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC----CHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~----d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
...|+|.+.+ .....|.+|.+.|++.|++.+.||+.. |.+....+.+ .....+..++...||+..
T Consensus 504 G~ditIva~G----~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k----~~~vvvveE~~~~gG~g~ 572 (641)
T PRK12571 504 GPDVAILSVG----AHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVR----HHIVVIVEEQGAMGGFGA 572 (641)
T ss_pred CCCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhh----hCCEEEEECCCCCCCHHH
Confidence 4578888887 467889999999999999999999843 3443333332 124566666666688854
No 339
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=33.14 E-value=90 Score=27.30 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL 126 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~ 126 (179)
...++|.+.+ .....+.++.+.|++.|++...+|+.
T Consensus 201 G~di~iva~G----~~~~~a~eAa~~L~~~Gi~v~vi~~~ 236 (327)
T PRK09212 201 GSDVTIVTFS----IQVKLALEAAELLEKEGISVEVIDLR 236 (327)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 4568888887 46788999999999999999999973
No 340
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=33.05 E-value=1.4e+02 Score=24.58 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH-------------------HHHHHHHhcCCCCc-ce
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM-------------------LRQGLKEYSSWPTF-PQ 146 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~-------------------~~~~L~~~sg~~tv-P~ 146 (179)
..+|++|+-- --.--...+.|+..+.-+-.||+.+|++ +.+...+..+...+ -+
T Consensus 3 agrVivYGGk------GALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav 76 (236)
T KOG4022|consen 3 AGRVIVYGGK------GALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV 76 (236)
T ss_pred CceEEEEcCc------chHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence 4678999762 2233455678888877666677654322 11122222233344 45
Q ss_pred EeeCCEEEeecHHHHHHHHcccH
Q 030327 147 LYIEGEFFGGCDITVEAYKNGEL 169 (179)
Q Consensus 147 VfIdG~~IGG~del~~l~~~GeL 169 (179)
+.|.|-+-||...-+++.++-+|
T Consensus 77 ~CVAGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 77 FCVAGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred EEeeccccCCCcchhhhhhchhh
Confidence 67888899999888888888776
No 341
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=32.76 E-value=1.3e+02 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCcceEeeCCEEEe----ecHHHHHHHH
Q 030327 132 RQGLKEYSSWPTFPQLYIEGEFFG----GCDITVEAYK 165 (179)
Q Consensus 132 ~~~L~~~sg~~tvP~VfIdG~~IG----G~del~~l~~ 165 (179)
.+.+++......+|...|+.+..| |.+.+.++.+
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 64 FKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred HHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHH
Confidence 356666666778999999998887 3455555443
No 342
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=32.24 E-value=1.2e+02 Score=26.69 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=30.7
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL 126 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~ 126 (179)
....|+|...+ .....|.++.+.|++.|++.+.+|+.
T Consensus 200 ~G~ditiia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 200 PGNDITILTYS----RMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred cCCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34568887777 46778999999999999999999974
No 343
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=31.69 E-value=45 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred EeeCCEEEeec--HHHHHHHHcccHH
Q 030327 147 LYIEGEFFGGC--DITVEAYKNGELQ 170 (179)
Q Consensus 147 VfIdG~~IGG~--del~~l~~~GeL~ 170 (179)
+..||+..|=+ ++++++.++|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34589999955 6899999999874
No 344
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=77 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=16.1
Q ss_pred CCCCcceEeeCCEEEeecHHH
Q 030327 140 SWPTFPQLYIEGEFFGGCDIT 160 (179)
Q Consensus 140 g~~tvP~VfIdG~~IGG~del 160 (179)
|....|.+||+|+.++|.-.+
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred CCCcCCeEEECCeeecCCCCH
Confidence 667789999998877776543
No 345
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=30.88 E-value=1.6e+02 Score=20.95 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCCeEEEE
Q 030327 108 TVVQILKSLNAPFETVN 124 (179)
Q Consensus 108 ~ak~lL~~~gv~y~~vd 124 (179)
.+..+.++++++|.+++
T Consensus 46 ~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 46 RVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 34444455555555544
No 346
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=30.47 E-value=1e+02 Score=23.23 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=39.3
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHH-------HhcCCCCcceEeeCCEEEeecH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLK-------EYSSWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~-------~~sg~~tvP~VfIdG~~IGG~d 158 (179)
..+|+|.-.+ .|.|..+++..-+ .|.. .-.+|-.+++ +..... ......++|.++|..+ ..+
T Consensus 42 ~~~IvLv~RG-----~C~F~~K~~~Aq~-aGA~avII~n~~~~~-~~~m~~~~~~~~~~~~~~i~IP~v~Is~~---~G~ 111 (127)
T cd02125 42 RPVILLLDRG-----GCFFTLKAWNAQQ-AGAAAVLVADNVDEP-LLTMDTPEESGSADYIEKITIPSALITKA---FGE 111 (127)
T ss_pred CceEEEEECC-----CcCHHHHHHHHHH-CCCcEEEEEECCCCc-cccccCcccccccccCCCceEeEEEECHH---HHH
Confidence 5678888887 8999999887654 4655 4444543221 110000 0011236899998753 234
Q ss_pred HHHHHHHcc
Q 030327 159 ITVEAYKNG 167 (179)
Q Consensus 159 el~~l~~~G 167 (179)
++++..+.|
T Consensus 112 ~L~~~l~~g 120 (127)
T cd02125 112 KLKKAISNG 120 (127)
T ss_pred HHHHHHhcC
Confidence 455555544
No 347
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.42 E-value=87 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCeEEEE-cCCCHHHHHHHHHhc------CCCCcceEeeCCEEEeecHHHHHH
Q 030327 108 TVVQILKSLNAPFETVN-ILENEMLRQGLKEYS------SWPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 108 ~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~~~s------g~~tvP~VfIdG~~IGG~del~~l 163 (179)
.+.++.++.|++=.... ...|+++++.++.-+ |.-..|.+|++++..=|.|.+-.+
T Consensus 134 v~~~vA~~aGlDg~al~A~~gd~eik~~l~a~~~~a~srGvfGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 134 VVYAVANAAGLDGAALLALLGDDEIKARLKANTAEAVSRGVFGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred HHHHHHHHcCCCHHHHHhhcCCHHHHHHHHhhHHHHHhcCccCCCeEEECCeeeechhHHHHH
Confidence 44445555555422222 234678888776543 556679999999999999987554
No 348
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=30.38 E-value=1.2e+02 Score=21.30 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---------HHHHHHHHHhcCCCCcceEeeCCE
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---------EMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---------~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
|++++. |+|+=..-++.+.+..++++..+|..+. ..+++.+.+......-..||+|+-
T Consensus 1 ill~G~-----~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGP-----PGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESS-----TTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECc-----CCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 456666 6999999999999999999888885321 223334433211222467788874
No 349
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.21 E-value=1.2e+02 Score=22.08 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=39.8
Q ss_pred eeeccccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHH---HHHHHHhcCCC
Q 030327 66 FRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML---RQGLKEYSSWP 142 (179)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~---~~~L~~~sg~~ 142 (179)
+.|...+.+.-+.+++++..+++.+-+-.. .|+... +...++ ++..+=+ .|++ .+.+++..+..
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~~i~------a~~~~e-~~~~~~----~~Dvill--~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPLEAA------AGAYGS-HYDMIP----DYDLVIL--APQMASYYDELKKDTDRL 71 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEE------EeeHHH-HHHhcc----CCCEEEE--cChHHHHHHHHHHHhhhc
Confidence 445444444455666666666665433333 233322 111111 2222111 2333 45666666777
Q ss_pred CcceEeeCCEEEe
Q 030327 143 TFPQLYIEGEFFG 155 (179)
Q Consensus 143 tvP~VfIdG~~IG 155 (179)
.+|+..|+.+..|
T Consensus 72 ~ipv~~I~~~~Yg 84 (99)
T cd05565 72 GIKLVTTTGKQYI 84 (99)
T ss_pred CCCEEEeCHHHHh
Confidence 8999999987655
No 350
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.07 E-value=1.6e+02 Score=22.34 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 106 SHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
...+.++|+++|++...+.+..| +++.+.+.+......+ .|..+|.-.|..|-+.+..+
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~Dl-iIttGG~g~g~~D~t~~ai~ 89 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADV-VLTTGGTGVGPRDVTPEALE 89 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCE-EEECCCCCCCCCccHHHHHH
Confidence 45678889999988877775433 5567777665433233 44557776777776666544
No 351
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.80 E-value=1.9e+02 Score=22.05 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCeEEEEc-CCC-HHHHHHHHHhcC--CCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 106 SHTVVQILKSLNAPFETVNI-LEN-EMLRQGLKEYSS--WPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV-~~d-~~~~~~L~~~sg--~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
...+.++|++.|.+...+-+ .+| +++++.+.+... ...+ .|..+|.-+|..|-+.+..++
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~Dl-VittGG~s~g~~D~t~~al~~ 85 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDL-ILTTGGTGLAPRDVTPEATRP 85 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCE-EEECCCcCCCCCcCcHHHHHH
Confidence 44677889999988766665 333 456777776543 2233 456678777877776665444
No 352
>PTZ00110 helicase; Provisional
Probab=29.59 E-value=3.7e+02 Score=25.13 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327 77 LKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (179)
Q Consensus 77 ~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V 147 (179)
+...++.+. ...+++||.. ....|..+.+.|...+++...+.=+...+.|+++.+......++.|
T Consensus 366 L~~ll~~~~~~~~k~LIF~~------t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~IL 431 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVE------TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIM 431 (545)
T ss_pred HHHHHHHhcccCCeEEEEec------ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEE
Confidence 344455554 5568999998 4678999999999888886666555555555544433323334433
No 353
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.57 E-value=1.3e+02 Score=22.25 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCeEEEEc--CCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 106 SHTVVQILKSLNAPFETVNI--LENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV--~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
-..+.++|++.|.....+.+ |+.+++++.+.+......+ .|..+|.-+|..|-+.+..+
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dl-iittGG~g~g~~D~t~~~l~ 80 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADL-VITTGGTGPGPDDVTPEAVA 80 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCE-EEEcCCCCCCCCcCcHHHHH
Confidence 45778899999987655554 3335677777776544444 56678877777777776543
No 354
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=29.52 E-value=2.4e+02 Score=20.92 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=48.3
Q ss_pred CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
...+++..+..+++..++++=++ +..+.|..-+.+...+-----+++++.+.-+.--..+|+.+..|.
T Consensus 3 ~~~~v~~~L~~avkTGkvilG~k------------~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt 70 (100)
T COG1911 3 MGDDVEKELKLAVKTGKVILGSK------------RTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGT 70 (100)
T ss_pred ccchHHHHHHHHHhcCCEEEehH------------HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 45678889999999999987666 566666665566544433233677777776666668999988775
No 355
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=29.49 E-value=1.4e+02 Score=22.19 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCe
Q 030327 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF 120 (179)
Q Consensus 81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y 120 (179)
++.+. ..++.+++.|+...++-+--..+.++|+++|++.
T Consensus 19 ~~~~~-~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 57 (140)
T smart00226 19 FKAIV-GDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIAL 57 (140)
T ss_pred HHHhc-CCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCc
Confidence 33333 4469999999754467788899999999999974
No 356
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=29.38 E-value=2.3e+02 Score=22.18 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcce-EeeC
Q 030327 107 HTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQ-LYIE 150 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~-VfId 150 (179)
..+++++++++++|..+-.|.+..+. ...|...+|. ++||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~gv~~~P~t~vid 150 (185)
T PRK15412 110 QKAISWLKELGNPYALSLFDGDGMLG----LDLGVYGAPETFLID 150 (185)
T ss_pred HHHHHHHHHcCCCCceEEEcCCccHH----HhcCCCcCCeEEEEC
Confidence 57888999999998754344443332 2346778894 5554
No 357
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=29.24 E-value=28 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 104 GFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 104 p~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
--+..++.+|++.||++...|-....- ... .|....+.|+|..+
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred HHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCccCceEEEECHH
Confidence 357889999999999998876532211 111 34445588888764
No 358
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.05 E-value=84 Score=30.40 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc----CCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI----LENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV----~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
..+|.|...+ ..|+.|.+|.+-|.+.|+..+.+|. .-|+++..+|.+. ..+=..+-+|...||+-.
T Consensus 501 G~~vail~~G----~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~---h~~~vtlEe~~~~GG~Gs 570 (627)
T COG1154 501 GEKVAILAFG----TMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKS---HDLVVTLEENVVDGGFGS 570 (627)
T ss_pred CCcEEEEecc----hhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhh---cCeEEEEecCcccccHHH
Confidence 4668888887 4899999999999999999999995 2456655555543 233334557777898853
No 359
>PRK05899 transketolase; Reviewed
Probab=28.94 E-value=1.4e+02 Score=28.51 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC----HHHHHHHHHhcCCCCcceEeeCC-----------
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN----EMLRQGLKEYSSWPTFPQLYIEG----------- 151 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d----~~~~~~L~~~sg~~tvP~VfIdG----------- 151 (179)
...|+|.+.+ ..-..|.++.+.|++.|+..+.+|+..- .+....+....|...-+.|.+++
T Consensus 510 G~dvtiia~G----~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~ 585 (624)
T PRK05899 510 DPDVILIATG----SEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVG 585 (624)
T ss_pred CCCEEEEEeC----HHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcC
Confidence 4678888887 3566788999999999999999997432 11111222222333445665553
Q ss_pred ---EEEeecHHHHHHHHcccHHHHHHhhh
Q 030327 152 ---EFFGGCDITVEAYKNGELQELLEKAL 177 (179)
Q Consensus 152 ---~~IGG~del~~l~~~GeL~~~L~~a~ 177 (179)
..+| .++ ..++|..+++++..|
T Consensus 586 ~~~~~iG-v~~---f~~~g~~~~l~~~~g 610 (624)
T PRK05899 586 LDGKVLG-IDT---FGASAPADELFKEFG 610 (624)
T ss_pred CCceEEE-CCC---CCCCCCHHHHHHHhC
Confidence 2232 333 334677777776655
No 360
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=28.73 E-value=1.4e+02 Score=22.85 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=37.0
Q ss_pred eeeccccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeE
Q 030327 66 FRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE 121 (179)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~ 121 (179)
+.|.-..-...+.+.+-+.+....+.+++.||...++=+--..+.++|+++|+++.
T Consensus 7 FVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 7 FVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred EEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 34444333334434444444348899999997545666777889999999998754
No 361
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=28.56 E-value=1.8e+02 Score=20.59 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327 132 RQGLKEYSSWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 132 ~~~L~~~sg~~tvP~VfIdG~~IGG~d 158 (179)
.+.+++......+|...|+.+..|-.|
T Consensus 60 ~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 60 LDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHhccCCCcEEEcChHhcccCC
Confidence 344555556778999999998777443
No 362
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.21 E-value=1.5e+02 Score=21.08 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchH-HHHHHHHHhcCCCeEEEEcC-CCHHHHHHHHHh
Q 030327 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFS-HTVVQILKSLNAPFETVNIL-ENEMLRQGLKEY 138 (179)
Q Consensus 73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C-~~ak~lL~~~gv~y~~vdV~-~d~~~~~~L~~~ 138 (179)
.-+...+.++.+-+.++-++|... .+... ....+.|+++|++...-+|. ........|++.
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTN-----ns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTN-----NSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES------SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeC-----CCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc
Confidence 345567778888888665555553 33333 66777779999996553343 345667777774
No 363
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=28.04 E-value=1.4e+02 Score=29.06 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=25.5
Q ss_pred hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI 125 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV 125 (179)
.-.+..++-+...| .-|.+|++..+=|-++|......-+
T Consensus 265 kvPHTf~vHSY~rp--TVCq~CkkLLkGL~rQGlqCkDCk~ 303 (888)
T KOG4236|consen 265 KVPHTFIVHSYTRP--TVCQYCKKLLKGLFRQGLQCKDCKF 303 (888)
T ss_pred cCCeeEEEeeccCc--hHHHHHHHHHHHHHhcCcccccCCc
Confidence 34455555444322 3699999999988888887654433
No 364
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=27.66 E-value=1.8e+02 Score=26.94 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=44.8
Q ss_pred eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe--ecHHHHHHHHcccHHHHHHhhh
Q 030327 120 FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG--GCDITVEAYKNGELQELLEKAL 177 (179)
Q Consensus 120 y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG--G~del~~l~~~GeL~~~L~~a~ 177 (179)
...++.+.|.+....+.+.++...+|+|--+++.+| ..||+.+-.++.-=+++++.+|
T Consensus 206 ~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 206 VVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred ceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 566666777666666666779999999999999999 4588888777766677777666
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=27.45 E-value=2.6e+02 Score=20.74 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=6.5
Q ss_pred ceEeeCCEEEeecHHHH
Q 030327 145 PQLYIEGEFFGGCDITV 161 (179)
Q Consensus 145 P~VfIdG~~IGG~del~ 161 (179)
|.+++....=.|.+++.
T Consensus 72 ~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 72 PVVYVSAKERLGTKILR 88 (156)
T ss_pred cEEEEEccccccHHHHH
Confidence 44444433333344333
No 366
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.69 E-value=1.4e+02 Score=23.31 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHhhhcC--CcEEEEEeeCCCCCCCchHHHHHHHHHhcC--C-C---eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 81 LDKVVTG--NKVVLFMKGTKDFPQCGFSHTVVQILKSLN--A-P---FETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 81 l~~li~~--~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g--v-~---y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
+++++.. .++++.--|.. |=|-|-+.-++|.+.- + . ...+|+++-++..+. -+++..+++ +.|.+++
T Consensus 14 VdqaI~~t~~rlvViRFGr~---~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~-~~l~~p~tv-mfFfn~k 88 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRD---WDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKM-YELYDPPTV-MFFFNNK 88 (142)
T ss_pred HHHHHhcccceEEEEEecCC---CCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhh-hcccCCceE-EEEEcCc
Confidence 4444433 34444444432 5667777777776642 2 2 344566543333222 223223333 4488888
Q ss_pred EE
Q 030327 153 FF 154 (179)
Q Consensus 153 ~I 154 (179)
|+
T Consensus 89 Hm 90 (142)
T KOG3414|consen 89 HM 90 (142)
T ss_pred eE
Confidence 87
No 367
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=26.57 E-value=91 Score=30.61 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=44.8
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC----CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL----ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~----~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
+..+|.|...+ .....|.+|.+.|++.|+..+.+|+. -|.+.-.++.+.+ =-.|.+.+..+||+-.
T Consensus 566 eG~dvtIia~G----~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~----~~vVTvEE~~~GG~Gs 635 (701)
T PLN02225 566 EGQDVALLGYG----AMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNH----KFLITVEEGCVGGFGS 635 (701)
T ss_pred eCCCEEEEecc----HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhc----CeEEEEcCCCCCchHH
Confidence 35678888887 46778999999999999999999974 2555444444332 2345555445687743
No 368
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=26.49 E-value=84 Score=22.84 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327 129 EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (179)
Q Consensus 129 ~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de 159 (179)
.++.+.|.+...--.-|.|..+++.+-|+++
T Consensus 78 ~e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 78 EEALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 4455555554344456999999998888875
No 369
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=26.20 E-value=1.2e+02 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCCcceE-eeCCEEEeecHHHHHHHHc
Q 030327 132 RQGLKEYSSWPTFPQL-YIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 132 ~~~L~~~sg~~tvP~V-fIdG~~IGG~del~~l~~~ 166 (179)
|..|.+.-+-.++|-| ||+++-.-+..++-++...
T Consensus 102 rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~~ 137 (207)
T KOG4700|consen 102 RHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLRE 137 (207)
T ss_pred HHHHHHHhccccCCceEEecchHHHHHHHHHHHHHH
Confidence 3444444466677766 9998865555555554433
No 370
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.09 E-value=2.1e+02 Score=21.27 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCeEEEEc-CCC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 106 SHTVVQILKSLNAPFETVNI-LEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV-~~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
-..++++|++.|.+...+.+ .+| .++++.+.+......+ .|..+|.-+|..|-+.+..++
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dl-vittGG~g~g~~D~t~~ai~~ 82 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADL-VLTTGGTGVGRRDVTPEALAE 82 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCE-EEECCCCCCCCCcchHHHHHH
Confidence 45677789999987766654 333 5566777655333233 445577777777777665543
No 371
>PHA02558 uvsW UvsW helicase; Provisional
Probab=25.95 E-value=3.3e+02 Score=25.04 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe-ecH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG-GCD 158 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG-G~d 158 (179)
.+++||... -.+|+.+.+.|.+.|++...+.=....+.|+.+.+.........+...+..+| |+|
T Consensus 345 ~~~lV~~~~------~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 345 ENTFVMFKY------VEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred CCEEEEEEE------HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 445555553 23899999999999998777765545555555554443334445566666665 655
No 372
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=25.82 E-value=90 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=19.3
Q ss_pred CCCcceEeeCCEEEeecH--HHHHHHHcc
Q 030327 141 WPTFPQLYIEGEFFGGCD--ITVEAYKNG 167 (179)
Q Consensus 141 ~~tvP~VfIdG~~IGG~d--el~~l~~~G 167 (179)
...=|.+.|||+.++..+ .+.++.++|
T Consensus 44 C~~gP~v~V~~~~~~~~t~~~i~~~~~~~ 72 (72)
T cd03082 44 CERAPAALVGQRPVDGATPAAVAAAVEAG 72 (72)
T ss_pred cCCCCeEEECCEEeCCcCHHHHHHHHhcC
Confidence 456799999999998764 455555443
No 373
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=25.63 E-value=2e+02 Score=19.25 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP 119 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~ 119 (179)
+.+.+..+-...+|++|.. .+..+..+...|.++|.+
T Consensus 46 ~~~~~~~~~~~~~ivv~c~------~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 46 LDDWLGDLDRDRPVVVYCY------HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHhhcCCCCCEEEEeC------CCChHHHHHHHHHHcCCc
Confidence 3444555546778999987 577899999999999875
No 374
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.36 E-value=1.8e+02 Score=20.57 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEE
Q 030327 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV 123 (179)
Q Consensus 76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~v 123 (179)
++++.++.+.+..+|.+|+.+ ..-.-+......|...|.+...+
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g----~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVG----SSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcC----chHHHHHHHHHHHHHcCCceEEe
Confidence 356667777778889999887 23445666777777777654443
No 375
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=25.14 E-value=1.2e+02 Score=23.58 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcC--CCCcceEeeCCEEEeecHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLKEYSS--WPTFPQLYIEGEFFGGCDITVEA 163 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg--~~tvP~VfIdG~~IGG~del~~l 163 (179)
..+|+|...+ .|.|..+++..-+ .|.. .-.+|-..+ .....+...++ ..++|.++|..+ ..+.+++.
T Consensus 67 ~g~IvLV~RG-----~CtF~~Kv~nAq~-aGA~avII~n~~~~-~~~~m~~~~~~~~~v~IP~v~Is~~---dg~~L~~~ 136 (153)
T cd02123 67 GSFIVLIRRG-----NCSFETKVRNAQR-AGYKAAIVYNDESN-DLISMSGNDQEIKGIDIPSVFVGKS---TGEILKKY 136 (153)
T ss_pred CCeEEEEECC-----CCCHHHHHHHHHH-CCCCEEEEEECCCC-cceeccCCCCCCcCCEEEEEEeeHH---HHHHHHHH
Confidence 5778888887 8999999888554 5655 334443222 11111111111 347999998754 22344444
Q ss_pred HHcc
Q 030327 164 YKNG 167 (179)
Q Consensus 164 ~~~G 167 (179)
.+++
T Consensus 137 l~~~ 140 (153)
T cd02123 137 ASYE 140 (153)
T ss_pred HhcC
Confidence 4443
No 376
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.85 E-value=3.3e+02 Score=22.74 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=37.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC---CCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL---ENEMLRQGLKEYSSWPTFPQLYIEGE 152 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~---~d~~~~~~L~~~sg~~tvP~VfIdG~ 152 (179)
.+++|+. |+|+-..-++.+-++.+.++..++.. .-.++.+.+... ..-..+|||+-
T Consensus 32 ~~ll~Gp-----~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGP-----PGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL---EEGDVLFIDEI 90 (305)
T ss_pred eEEEECC-----CCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc---ccCCEEEEehH
Confidence 4777777 69999999999999999887666532 123333444332 23357788874
No 377
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=24.55 E-value=1.7e+02 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.4
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
..|.||+.- +-|+-|..|.+-|...
T Consensus 97 G~i~l~te~----~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTEL----PPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecC----CcChhHHHHHHHHHHH
Confidence 679999996 7899999987766553
No 378
>PRK01889 GTPase RsgA; Reviewed
Probab=24.54 E-value=4.2e+02 Score=23.36 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCC----eEEEEcCCCH-HHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHccc
Q 030327 105 FSHTVVQILKSLNAP----FETVNILENE-MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGE 168 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~----y~~vdV~~d~-~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~Ge 168 (179)
.=.+....+...|++ +...|+..+. +..+.+..+ ...+|.++++-..=-|.+++.++...|+
T Consensus 130 ~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~~g~ 196 (356)
T PRK01889 130 RIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLSGGK 196 (356)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhhcCC
Confidence 334444445667776 3444554332 233444444 3456777776655456777777766554
No 379
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=24.52 E-value=1.8e+02 Score=25.86 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=45.0
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC----CHH-HHHHHHHhcCCCCcceEee-CCEEEeecHH
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEM-LRQGLKEYSSWPTFPQLYI-EGEFFGGCDI 159 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~----d~~-~~~~L~~~sg~~tvP~VfI-dG~~IGG~de 159 (179)
+..+++|.+.+ .....+.++.+.|++.|++...+|+.. |.+ +.+.+++ ++ ..|.+ ++...||+..
T Consensus 232 ~G~di~Iia~G----s~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~-~~----~IvvvEE~~~~GGlG~ 302 (355)
T PTZ00182 232 EGKDVTIVGYG----SQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKK-TG----RCVIVHEAPPTCGIGA 302 (355)
T ss_pred CCCCEEEEEeC----HHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhc-CC----EEEEEEeCCCCCCHHH
Confidence 45678888887 477889999999999999999999742 333 3444332 11 23444 4455588854
Q ss_pred -HHHH
Q 030327 160 -TVEA 163 (179)
Q Consensus 160 -l~~l 163 (179)
+.++
T Consensus 303 ~Va~~ 307 (355)
T PTZ00182 303 EIAAQ 307 (355)
T ss_pred HHHHH
Confidence 4443
No 380
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=24.45 E-value=1.6e+02 Score=26.08 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=42.8
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-----HHHHHHHHHhcCCCCcceEe--eCC-EEEeecH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-----EMLRQGLKEYSSWPTFPQLY--IEG-EFFGGCD 158 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-----~~~~~~L~~~sg~~tvP~Vf--IdG-~~IGG~d 158 (179)
..+.++|... .+.+|. .+...-+|+....|.++++ .++++.|.+.......|.+. .-| ..-|..|
T Consensus 139 ~~~~~i~~s~-----~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 139 IPKPVIYVSE-----QAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp CSSEEEEEET-----TS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-
T ss_pred cccccccccc-----ccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc
Confidence 3567777774 677876 5667777888888888764 45666666554455567332 334 4447778
Q ss_pred HHHHH
Q 030327 159 ITVEA 163 (179)
Q Consensus 159 el~~l 163 (179)
++.++
T Consensus 212 ~l~~i 216 (373)
T PF00282_consen 212 PLEEI 216 (373)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 77664
No 381
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=24.24 E-value=3.1e+02 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=34.4
Q ss_pred HHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 76 ELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 76 ~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
.+.+.+.+.++ ..+|+||.. ....+.++.++|.+.|++...+.-+.+.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~------t~~~ae~L~~~L~~~gi~~~~~h~~~~~ 482 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTL------TKRMAEDLTDYLKELGIKVRYLHSDIDT 482 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeC------CHHHHHHHHHHHhhcceeEEEEECCCCH
Confidence 44555555444 567888887 5778999999999999987776543343
No 382
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=24.00 E-value=2.6e+02 Score=24.62 Aligned_cols=96 Identities=9% Similarity=0.181 Sum_probs=59.2
Q ss_pred CHHHHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeE-EE-EcCC-----CHHHHHHHHHhcCCCCcc
Q 030327 74 TPELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE-TV-NILE-----NEMLRQGLKEYSSWPTFP 145 (179)
Q Consensus 74 ~~~~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~-~v-dV~~-----d~~~~~~L~~~sg~~tvP 145 (179)
.++....++.+..-. .|.+|+. .|.--..+.....+.|++.. =| -.++ +..+........||..|=
T Consensus 62 a~~~~sDLe~l~~~t~~IR~Y~s------DCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~ 135 (305)
T COG5309 62 ADQVASDLELLASYTHSIRTYGS------DCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVT 135 (305)
T ss_pred HHHHHhHHHHhccCCceEEEeec------cchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceE
Confidence 345666676665554 7999995 67777777777788886521 11 1111 123444555567899999
Q ss_pred eEeeCCEEEeec----HHHHHHHHcccHHHHHHhhh
Q 030327 146 QLYIEGEFFGGC----DITVEAYKNGELQELLEKAL 177 (179)
Q Consensus 146 ~VfIdG~~IGG~----del~~l~~~GeL~~~L~~a~ 177 (179)
.|-|+.+.+-+- ++|.+.+.+ ....|+++|
T Consensus 136 ~v~VGnEal~r~~~tasql~~~I~~--vrsav~~ag 169 (305)
T COG5309 136 TVTVGNEALNRNDLTASQLIEYIDD--VRSAVKEAG 169 (305)
T ss_pred EEEechhhhhcCCCCHHHHHHHHHH--HHHHHHhcC
Confidence 999999988654 345555433 334455554
No 383
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.96 E-value=1e+02 Score=25.04 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=10.5
Q ss_pred CCCchHHHHHHHHHhc
Q 030327 101 PQCGFSHTVVQILKSL 116 (179)
Q Consensus 101 p~Cp~C~~ak~lL~~~ 116 (179)
+.|++|+++-+.+...
T Consensus 128 ~~~~~~~~a~~~~~~~ 143 (244)
T COG1651 128 PACPYCRRAAQAARCA 143 (244)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 5777777776666443
No 384
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=23.75 E-value=1.7e+02 Score=24.94 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=47.0
Q ss_pred hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEE--------EEcCCCH--HHHHHHHHhcCCCCcc-----eEee
Q 030327 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFET--------VNILENE--MLRQGLKEYSSWPTFP-----QLYI 149 (179)
Q Consensus 85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~--------vdV~~d~--~~~~~L~~~sg~~tvP-----~VfI 149 (179)
+...++.+|+-= .=..-..+...|++.||+|+. +-|+++. +.+..|... |-+.-. .+|-
T Consensus 16 l~gC~~~LysgL-----~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La~~-GLP~~g~~~~~~lFd 89 (249)
T PRK15348 16 LTACDVDLYRSL-----PEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLN-GYPHRQFTTADKMFP 89 (249)
T ss_pred HhcCChHHHcCC-----CHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHHHc-CCCCCCCccHHHhCC
Confidence 344556777742 233577899999999999965 2233322 234444443 433222 1443
Q ss_pred CCEEEeecHHHHH---HHHcccHHHHHHh
Q 030327 150 EGEFFGGCDITVE---AYKNGELQELLEK 175 (179)
Q Consensus 150 dG~~IGG~del~~---l~~~GeL~~~L~~ 175 (179)
.+.++-|-.+.++ +..+|||.+.|+.
T Consensus 90 ~~~l~~t~te~~qki~y~regELarTI~~ 118 (249)
T PRK15348 90 ANQLVVSPQEEQQKINFLKEQRIEGMLSQ 118 (249)
T ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333332 5568999988864
No 385
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.66 E-value=3.7e+02 Score=21.25 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=40.3
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCC----CcceEeeC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP----TFPQLYIE 150 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~----tvP~VfId 150 (179)
++|++-|..+.+....+.++.+.|++.||....|=|... ...+|+.+.|.+ ..|.+|.-
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~--~~~el~~ia~~~~~~~~~~~~~~~ 174 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA--SENKLKLLAGCDINNDNCPNVIKT 174 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc--cHHHHHHhcCCCCCCCCCCeEEec
Confidence 666666643333345577888899999999888888542 246788888864 45666654
No 386
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.56 E-value=2.4e+02 Score=22.67 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEcCCC--HHHH-HHHHHhc-----------C-----------CCCcceE--eeCCEEE
Q 030327 102 QCGFSHTVVQILKSLNAPFETVNILEN--EMLR-QGLKEYS-----------S-----------WPTFPQL--YIEGEFF 154 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~-~~L~~~s-----------g-----------~~tvP~V--fIdG~~I 154 (179)
.-..-+++.++|++.|++|+..=+..+ |+.. +..++.. | ...+|+| -|..+.+
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L 93 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKAL 93 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCccccc
Confidence 445678999999999999998877765 4332 2221110 1 3457777 5677888
Q ss_pred eecHHHHHH
Q 030327 155 GGCDITVEA 163 (179)
Q Consensus 155 GG~del~~l 163 (179)
+|.|.|...
T Consensus 94 ~GlDSL~Si 102 (162)
T COG0041 94 SGLDSLLSI 102 (162)
T ss_pred cchHHHHHH
Confidence 888877654
No 387
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.36 E-value=1.5e+02 Score=25.91 Aligned_cols=30 Identities=40% Similarity=0.661 Sum_probs=21.2
Q ss_pred cceE---eeCCEEEeecHHHHHHH--HcccHHHHHH
Q 030327 144 FPQL---YIEGEFFGGCDITVEAY--KNGELQELLE 174 (179)
Q Consensus 144 vP~V---fIdG~~IGG~del~~l~--~~GeL~~~L~ 174 (179)
+|++ -|++ .+||++++++-| ..|+|+++|.
T Consensus 305 fP~~~L~~Ved-~fGgW~~v~k~hFa~Gg~LD~l~~ 339 (341)
T COG4150 305 FPQTELFRVED-KFGGWPEVMKTHFASGGELDKLLA 339 (341)
T ss_pred CCceEEEEecc-ccCChHHHHHHhhcccccHHHHhc
Confidence 5655 4555 689999987743 4588888875
No 388
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=23.32 E-value=1.2e+02 Score=24.58 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHhcCCCeE----EEEcCCCHHHHHHHHHhc-CCCCcce-----------EeeCCEEEeecHHHHHHHH
Q 030327 102 QCGFSHTVVQILKSLNAPFE----TVNILENEMLRQGLKEYS-SWPTFPQ-----------LYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 102 ~Cp~C~~ak~lL~~~gv~y~----~vdV~~d~~~~~~L~~~s-g~~tvP~-----------VfIdG~~IGG~del~~l~~ 165 (179)
=||+|..==+.-++..-.|. ..++..+++..++|..+| |..+.-+ -|++.. |.+||.++
T Consensus 51 lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC~D~CaFlG~v---g~~El~~~-- 125 (176)
T PF03691_consen 51 LCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHCDDYCAFLGYV---GWEELKAM-- 125 (176)
T ss_pred cCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhhhhcCCHHHhcCCC---CHHHHHHH--
Confidence 48999854444444443332 112224688888888876 5444433 344432 67888888
Q ss_pred cccHHHHHHhh
Q 030327 166 NGELQELLEKA 176 (179)
Q Consensus 166 ~GeL~~~L~~a 176 (179)
.+++.+++++.
T Consensus 126 ~~~~~~~~~~~ 136 (176)
T PF03691_consen 126 PEELEEVLEDY 136 (176)
T ss_pred HHHHHHHHHHH
Confidence 56677777654
No 389
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=22.98 E-value=3.8e+02 Score=23.43 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.2
Q ss_pred eecHHHHHHHHcccHHHHHHh
Q 030327 155 GGCDITVEAYKNGELQELLEK 175 (179)
Q Consensus 155 GG~del~~l~~~GeL~~~L~~ 175 (179)
|.-|....++++|-|++++++
T Consensus 115 GhG~i~~aL~~sG~L~~l~~~ 135 (300)
T cd00897 115 GHGDIFESLYNSGLLDTLLAQ 135 (300)
T ss_pred CCchHHHHHHHCCcHHHHHhc
Confidence 555778889999999998865
No 390
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=22.71 E-value=2.1e+02 Score=22.27 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=25.4
Q ss_pred cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC
Q 030327 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP 119 (179)
Q Consensus 86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~ 119 (179)
++.+|++|-.+ +|..+..+...|..+|.+
T Consensus 115 ~d~~IVvYC~~-----G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLA-----DCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECC-----CCHHHHHHHHHHHhcCCc
Confidence 56789999885 899999999999999976
No 391
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=22.63 E-value=2.8e+02 Score=21.59 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCeEEEEcC-CC-HHHHHHHHHhc--CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 106 SHTVVQILKSLNAPFETVNIL-EN-EMLRQGLKEYS--SWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 106 C~~ak~lL~~~gv~y~~vdV~-~d-~~~~~~L~~~s--g~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
-..+..+|++.|.+...+.+. +| +++++.+.+.. ....+ .|..+|.-+|..|-+.+..+
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~Dl-VIttGGtg~g~~D~t~eal~ 86 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQV-ILITGGTGFTGRDVTPEALE 86 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCE-EEECCCcCCCCCCCcHHHHH
Confidence 457778899999987777653 33 56777777653 12232 45668888888887666544
No 392
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.48 E-value=5.8e+02 Score=23.07 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=55.3
Q ss_pred ceeeccccCCHHHHHHHHhhhcCCcEEEEEee---CCCCC-CCch---HHHHHHHHHhcCCCeEEEEcCCC--HH-HHHH
Q 030327 65 TFRCLAAALTPELKSTLDKVVTGNKVVLFMKG---TKDFP-QCGF---SHTVVQILKSLNAPFETVNILEN--EM-LRQG 134 (179)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~li~~~~Vvlysk~---t~~~p-~Cp~---C~~ak~lL~~~gv~y~~vdV~~d--~~-~~~~ 134 (179)
.+-..+++.+..+.+.+-..---+-.=+|++. ..++. .||+ |+.|+.+.+.++|+++.++...+ .+ ....
T Consensus 8 VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~ 87 (377)
T KOG2805|consen 8 VVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPF 87 (377)
T ss_pred EEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHH
Confidence 34445567777777766655555556678875 12222 4665 88999999999999999997432 22 3334
Q ss_pred HHHhc-CCCCcceEeeCC
Q 030327 135 LKEYS-SWPTFPQLYIEG 151 (179)
Q Consensus 135 L~~~s-g~~tvP~VfIdG 151 (179)
|.++. |...-|-|.-|-
T Consensus 88 L~~Y~~G~TPNPDI~CN~ 105 (377)
T KOG2805|consen 88 LEEYENGRTPNPDILCNK 105 (377)
T ss_pred HHHHhcCCCCCCCccccc
Confidence 44443 666677775554
No 393
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=22.37 E-value=4.7e+02 Score=25.36 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327 76 ELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (179)
Q Consensus 76 ~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~ 129 (179)
.+...+.+.++ ..+++||.. .+..+.++.++|.+.|++...+.-+.+.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~------tk~~ae~L~~~L~~~gi~~~~lh~~~~~ 478 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTL------TKKMAEDLTDYLKELGIKVRYLHSEIDT 478 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEEC------CHHHHHHHHHHHhhhccceeeeeCCCCH
Confidence 44455555444 456888887 6889999999999999987766433333
No 394
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=4.3e+02 Score=25.93 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=38.7
Q ss_pred HHHHhhhcCCcEEEEEeeCCCCCCCchHH----------HHHHHHHhcCCCeEEEEcC--CCHHH----HHHHHHhcCCC
Q 030327 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSH----------TVVQILKSLNAPFETVNIL--ENEML----RQGLKEYSSWP 142 (179)
Q Consensus 79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~----------~ak~lL~~~gv~y~~vdV~--~d~~~----~~~L~~~sg~~ 142 (179)
+.+++..+.++-++.+-+. .+|.+|+ ++-++|++. |.-|-|| +-|++ .+..+.++|+.
T Consensus 34 eAf~~A~~edkPIflSIGy---s~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGY---STCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred HHHHHHHHhCCCEEEEecc---ccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 3455555666655555553 4788887 344455553 4444444 33333 44555667777
Q ss_pred CcceEee---CCEEE
Q 030327 143 TFPQLYI---EGEFF 154 (179)
Q Consensus 143 tvP~VfI---dG~~I 154 (179)
..|.-.+ ||+++
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 7775433 55554
No 395
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=22.25 E-value=71 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=14.3
Q ss_pred CCCCcceEeeCCEEEeecH
Q 030327 140 SWPTFPQLYIEGEFFGGCD 158 (179)
Q Consensus 140 g~~tvP~VfIdG~~IGG~d 158 (179)
|....=++||||.++|.+-
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 4444568999999999753
No 396
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.11 E-value=1.7e+02 Score=27.76 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHHhhhcC------------CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHH-
Q 030327 71 AALTPELKSTLDKVVTG------------NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGL- 135 (179)
Q Consensus 71 ~~~~~~~~~~l~~li~~------------~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L- 135 (179)
+....++.++++.+++. ..|.|.+-++. .=+.++++...|+++|++|+..=...+ ++....+
T Consensus 382 g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~s---d~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~ 458 (577)
T PLN02948 382 GPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDS---DLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYA 458 (577)
T ss_pred cCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchh---hHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHH
Confidence 34455666666666543 34666666643 456899999999999999874333332 3222222
Q ss_pred HHh----------------------cCCCCcceEe--eCCEEEeecHHHHHHHHc
Q 030327 136 KEY----------------------SSWPTFPQLY--IEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 136 ~~~----------------------sg~~tvP~Vf--IdG~~IGG~del~~l~~~ 166 (179)
++. .+..++|+|= +++...+|.|.|..+.+.
T Consensus 459 ~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 459 RSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM 513 (577)
T ss_pred HHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC
Confidence 111 1356778873 344467888888777654
No 397
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.11 E-value=2.9e+02 Score=19.37 Aligned_cols=32 Identities=6% Similarity=-0.086 Sum_probs=15.2
Q ss_pred CCchH--HHHHHHHHhcCCCeEEEEcCCCHHHHHHH
Q 030327 102 QCGFS--HTVVQILKSLNAPFETVNILENEMLRQGL 135 (179)
Q Consensus 102 ~Cp~C--~~ak~lL~~~gv~y~~vdV~~d~~~~~~L 135 (179)
+|+.- +++..+-+.++|+|. .+....++-..+
T Consensus 33 Da~~~~~k~i~~~c~~~~Vpv~--~~~t~~eLG~A~ 66 (82)
T PRK13601 33 DAEEHVTKKIKELCEEKSIKIV--YIDTMKELGVMC 66 (82)
T ss_pred CCCHHHHHHHHHHHHhCCCCEE--EeCCHHHHHHHH
Confidence 66641 122223355688883 333334444444
No 398
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=21.81 E-value=4.7e+02 Score=21.76 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=43.4
Q ss_pred CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC---CeEEEEcC----CCHHHHHHHHHhcCCCCcce
Q 030327 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNIL----ENEMLRQGLKEYSSWPTFPQ 146 (179)
Q Consensus 74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv---~y~~vdV~----~d~~~~~~L~~~sg~~tvP~ 146 (179)
+.+....+..++.+..+-+-... .+.++|+...- -.-..|+- +..++++.|.+. ..++|+
T Consensus 13 D~~vr~al~~Ll~s~G~~v~~~~-----------s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~--~~~~PV 79 (202)
T COG4566 13 DESVRDALAFLLESAGFQVKCFA-----------SAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER--GIRLPV 79 (202)
T ss_pred cHHHHHHHHHHHHhCCceeeeec-----------CHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhc--CCCCCE
Confidence 44566777778877664443332 24567766421 25666763 457888888875 578999
Q ss_pred EeeCCE
Q 030327 147 LYIEGE 152 (179)
Q Consensus 147 VfIdG~ 152 (179)
||+-|.
T Consensus 80 IfiTGh 85 (202)
T COG4566 80 IFLTGH 85 (202)
T ss_pred EEEeCC
Confidence 999885
No 399
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=21.72 E-value=1.7e+02 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCCeEEEEcCC
Q 030327 107 HTVVQILKSLNAPFETVNILE 127 (179)
Q Consensus 107 ~~ak~lL~~~gv~y~~vdV~~ 127 (179)
+++.++|++++++|+.++...
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 468899999999999888763
No 400
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=21.65 E-value=1.4e+02 Score=22.17 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHH-HhcCCCCcceEeeCC
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLK-EYSSWPTFPQLYIEG 151 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~-~~sg~~tvP~VfIdG 151 (179)
..+|+|...+ .|.|..+++. ..+.|.. .-.+|-...+.+-..+. ......++|.++|..
T Consensus 39 ~gkIvLV~RG-----~CsF~~K~~n-Aq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~ 99 (117)
T cd04813 39 DGKVALVLRG-----GCGFLDKVMW-AQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSR 99 (117)
T ss_pred CCeEEEEECC-----CCCHHHHHHH-HHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcH
Confidence 5678888887 8999999888 4555665 34444322211101110 112334789999864
No 401
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.62 E-value=6e+02 Score=23.00 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH
Q 030327 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (179)
Q Consensus 78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~ 137 (179)
...+.+.......+||.. ....|..+.+.|.+.|+....+.=....+.|+...+
T Consensus 217 ~~~l~~~~~~~~~IIF~~------s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 217 LRFIRKEFKGKSGIIYCP------SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred HHHHHHhcCCCceEEEEC------cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 333333334456688888 578899999999999998766655445555554443
No 402
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=21.42 E-value=2.2e+02 Score=23.42 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCCCHH----HHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcc
Q 030327 105 FSHTVVQILKSLNAPFETVNILENEM----LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNG 167 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~~d~~----~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~G 167 (179)
....+.+.+.++++.+-..||+.+-. -.+.+++......+|.+.-+| |+..+++.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 45567777888887666677765311 122333333445789777777 57788887776544
No 403
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.40 E-value=47 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=16.0
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~ 116 (179)
.|.+|+- +-||||-.-++-|++.
T Consensus 7 ~I~v~sD-----~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSD-----VVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeC-----CcCchhhcCHHHHHHH
Confidence 3555665 6899998777766554
No 404
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=21.38 E-value=1.7e+02 Score=21.40 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165 (179)
Q Consensus 87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~ 165 (179)
..+|+|.-.+ .|.|..+++. ..+.|.. .-.+|-..+......+. ......+|.++|..+ ..+.++++.+
T Consensus 44 ~gkIvlv~rg-----~c~f~~K~~~-A~~aGA~~vIv~n~~~~~~~~~~~~-~~~~~~Ip~v~Is~~---~G~~L~~~l~ 113 (122)
T cd02130 44 AGNIALIERG-----ECPFGDKSAL-AGAAGAAAAIIYNNVPAGGLSGTLG-EPSGPYVPTVGISQE---DGKALVAALA 113 (122)
T ss_pred CCEEEEEECC-----CCCHHHHHHH-HHHCCCcEEEEEECCCCcccccccC-CCCCCEeeEEEecHH---HHHHHHHHHh
Confidence 6778888876 8999877666 4555655 44444331111111110 111346788887653 2344555555
Q ss_pred cc
Q 030327 166 NG 167 (179)
Q Consensus 166 ~G 167 (179)
.|
T Consensus 114 ~g 115 (122)
T cd02130 114 NG 115 (122)
T ss_pred cC
Confidence 54
No 405
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.30 E-value=64 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=15.2
Q ss_pred cEEEEEeeCCCCCCCchHHHHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTVVQILK 114 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~ 114 (179)
+|.+|.- +-||||-.+.+.|+
T Consensus 2 ~i~~~~D-----~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFID-----PLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEEC-----CCCchhhCchHHHH
Confidence 3666666 69999987666664
No 406
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.26 E-value=1.1e+02 Score=22.86 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEcC-CC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 105 FSHTVVQILKSLNAPFETVNIL-EN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~-~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
....+.++|.++|.+...+.+. +| +++.+.+.+......+ .|..+|.=+|..|-+.+..++
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~-VittGG~g~~~~D~t~~a~~~ 80 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADL-VITTGGTGPGPDDVTPEALAE 80 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSE-EEEESSSSSSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCE-EEEcCCcCcccCCcccHHHHH
Confidence 3567788999999987776653 33 5677777655433344 567788777777777766543
No 407
>PHA00689 hypothetical protein
Probab=21.22 E-value=34 Score=22.39 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=9.6
Q ss_pred cCCCceeeeeec
Q 030327 10 ATPRAFTCKSVS 21 (179)
Q Consensus 10 ~~~~~~~~~~~~ 21 (179)
.-|||.|||-|-
T Consensus 13 qepravtckrcg 24 (62)
T PHA00689 13 QEPRAVTCKRCG 24 (62)
T ss_pred cCcceeehhhcc
Confidence 468999999884
No 408
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.04 E-value=2.6e+02 Score=19.32 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=26.3
Q ss_pred cEEEEEeeCCCCCCCchHHHH----HHHHHhc---CCCeEEEEcCCCHHHHHH
Q 030327 89 KVVLFMKGTKDFPQCGFSHTV----VQILKSL---NAPFETVNILENEMLRQG 134 (179)
Q Consensus 89 ~Vvlysk~t~~~p~Cp~C~~a----k~lL~~~---gv~y~~vdV~~d~~~~~~ 134 (179)
...+|..+ .-+-+.++ ++++++. ....+.+||.+++++.+.
T Consensus 3 ~L~Lyv~g-----~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~ 50 (72)
T cd02978 3 VLRLYVAG-----RTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEE 50 (72)
T ss_pred EEEEEECC-----CCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhh
Confidence 35677775 44555554 4455554 345789999999987664
No 409
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.82 E-value=2.7e+02 Score=18.64 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA 118 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv 118 (179)
+...+..+-...+|++|.. ....+..+...|++.|.
T Consensus 41 ~~~~~~~~~~~~~vvl~c~------~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 41 LRDRLNELPKDKEIIVYCA------VGLRGYIAARILTQNGF 76 (90)
T ss_pred HHHHHHhcCCCCcEEEEcC------CChhHHHHHHHHHHCCC
Confidence 3444444444567888865 34567777888898887
No 410
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.81 E-value=5.9e+02 Score=22.48 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH
Q 030327 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK 136 (179)
Q Consensus 77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~ 136 (179)
..+.+++++++..+++.+-+-|.--.=-+|.++.+++++.|+.+ .+|. +.+.+++.|.
T Consensus 119 ~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~v-ilD~-Sg~~L~~~L~ 176 (310)
T COG1105 119 FLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKV-ILDT-SGEALLAALE 176 (310)
T ss_pred HHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeE-EEEC-ChHHHHHHHc
Confidence 35566667888999999887666556678999999999998765 3455 2344544444
No 411
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.71 E-value=4.6e+02 Score=22.11 Aligned_cols=59 Identities=7% Similarity=-0.018 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCC---C-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327 105 FSHTVVQILKSLNAPFETVNILE---N-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~~---d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~ 166 (179)
.+-.+.+++...|.+|..+|..- | .++.+.+...-.....|.|-|-+. ....+++..+.
T Consensus 28 ~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~---~~~~i~r~LD~ 90 (256)
T PRK10558 28 ANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN---EPVIIKRLLDI 90 (256)
T ss_pred CCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC---CHHHHHHHhCC
Confidence 35688899999999999999842 2 455555555556667888888553 33444444443
No 412
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=20.66 E-value=4e+02 Score=20.50 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=34.2
Q ss_pred EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030327 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP 142 (179)
Q Consensus 90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~ 142 (179)
|++++-|.+.......+..+.+.+++.|+....+-+ .+ .-.++|+.+.+.+
T Consensus 107 villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv-~~-~~~~~L~~iA~~~ 157 (185)
T cd01474 107 IIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV-TD-FLKSQLINIADSK 157 (185)
T ss_pred EEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee-ch-hhHHHHHHHhCCC
Confidence 677777644222345677777788899999888877 22 2356788887654
No 413
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=20.45 E-value=3e+02 Score=18.99 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=28.4
Q ss_pred EEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec---HHHHHHHHcc
Q 030327 122 TVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC---DITVEAYKNG 167 (179)
Q Consensus 122 ~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~---del~~l~~~G 167 (179)
.+|.++-..+++.+.--....+.-...|+|..|-|. ++++++.++.
T Consensus 4 ~~~~~dl~~ik~~~gVP~~l~SCHTa~v~gy~iEGHVPa~~I~~lL~e~ 52 (70)
T PF04214_consen 4 VVDTDDLSAIKQRLGVPPELASCHTAVVGGYVIEGHVPADDIKRLLAEK 52 (70)
T ss_pred EEEccchHHHHHHhCCCchhccccEEEECCEEEEccCCHHHHHHHHhcC
Confidence 334433344544443322345677889999999986 6777776553
No 414
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.42 E-value=5.2e+02 Score=21.69 Aligned_cols=60 Identities=8% Similarity=-0.093 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCC----CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcc
Q 030327 105 FSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNG 167 (179)
Q Consensus 105 ~C~~ak~lL~~~gv~y~~vdV~~----d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~G 167 (179)
.+-.+.+++...|.+|..+|..- ..++.+.+.........|.|-|-+. ..+.+++..+.|
T Consensus 21 ~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~---~~~~i~r~LD~G 84 (249)
T TIGR03239 21 GNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN---EPVIIKRLLDIG 84 (249)
T ss_pred CCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC---CHHHHHHHhcCC
Confidence 45688899999999999999842 2556566655556667788888553 344455544433
No 415
>PF09034 TRADD_N: TRADD, N-terminal domain; InterPro: IPR009095 TRADD is a signalling adaptor protein involved in tumour necrosis factor-receptor I (TNFR1)-associated apoptosis and cell survival. The decision between apoptosis and cell survival involves the interplay between two sequential signalling complexes. The plasma membrane-bound complex I is comprised of TNFR1, TRADD, the kinase RIP1, and TRAF2, which together mediate the activation of NF-kappaB. Subsequently, complex II is formed in the cytoplasm, where TRADD and RIP1 associate with FADD and caspase-8. If NF-kappaB is activated by complex I, then complex II will associate with the caspase-8 inhibitor FLIP(L) and the cell survives, while the failure to activate NF-kappaB leads to apoptosis []. The TRADD C-terminal death domain is responsible for its association with TNFR1, and with the death-domain proteins FADD and RIP1, which promote apoptosis. The TRADD N-terminal domain binds TRAF2 and promotes TRAF2 recruitment to TNFR1, thereby mediating the activation of NK-kappaB and JNK/AP1, which promote cell survival []. The N-terminal TRADD domain is composed of an alpha-beta sandwich, where the beta strands form an antiparallel beta-sheet.; GO: 0004871 signal transducer activity, 0006917 induction of apoptosis, 0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade, 0005737 cytoplasm; PDB: 1F3V_A 1F2H_A.
Probab=20.38 E-value=1e+02 Score=23.18 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=27.3
Q ss_pred cceEeeCCEEEe--ecHHHHHHHHcccHHHHHHhh
Q 030327 144 FPQLYIEGEFFG--GCDITVEAYKNGELQELLEKA 176 (179)
Q Consensus 144 vP~VfIdG~~IG--G~del~~l~~~GeL~~~L~~a 176 (179)
=|++.|.=+|.| -|..+.+.|.+|.|+..|+..
T Consensus 18 dpqLiVqlkF~~~~~C~rFL~sYreGalr~~Lq~~ 52 (111)
T PF09034_consen 18 DPQLIVQLKFCGREPCRRFLRSYREGALRQSLQQH 52 (111)
T ss_dssp TTCEEEEEEEESHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCeeEEEEEEcCchhHHHHHHHHhccHHHHHHHHH
Confidence 478888778887 578999999999999988654
No 416
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.26 E-value=2.9e+02 Score=25.01 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=30.9
Q ss_pred CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH
Q 030327 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (179)
Q Consensus 88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~ 137 (179)
.+++||.. ....|+.+.++|.+.|+....+.=....+.|..+.+
T Consensus 336 ~~~IVF~~------s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 336 ERVMVFAN------RKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred CeEEEEeC------CHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 47999988 466789999999999988766654444444444443
No 417
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=20.07 E-value=1.8e+02 Score=22.84 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHhhhcC-CcE-EEEEeeCCCCCCCchHHHHHHHHHhc-CCCeEEEEcCCCHHHHHHH
Q 030327 77 LKSTLDKVVTG-NKV-VLFMKGTKDFPQCGFSHTVVQILKSL-NAPFETVNILENEMLRQGL 135 (179)
Q Consensus 77 ~~~~l~~li~~-~~V-vlysk~t~~~p~Cp~C~~ak~lL~~~-gv~y~~vdV~~d~~~~~~L 135 (179)
++..+++.+.. ..+ .+..- +|+++.+.-.+-... ++.|.++|..+--+.+..+
T Consensus 65 iD~~v~~~i~~~~~~~qvV~L------GaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~ 120 (183)
T PF04072_consen 65 IDDAVREFIAKHPGARQVVNL------GAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRL 120 (183)
T ss_dssp HHHHHHHHHHHHTTESEEEEE------T-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcEEEEc------CCCCCchHHHhhccccceEEEEeCCHHHHHHHHHH
Confidence 35556666643 335 55555 799999999988876 6777777764333333333
Done!