BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030330
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD
PE=2 SV=1
Length = 206
Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 147/159 (92%), Positives = 154/159 (96%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKTKRGAAALARLK YEGVP PYDK+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
>sp|Q9LRX8|R13A2_ARATH 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB
PE=1 SV=1
Length = 206
Score = 308 bits (790), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 145/159 (91%), Positives = 153/159 (96%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKTKRGAAALARLK +EGVP PYDKV
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
>sp|Q9SFU1|R13A1_ARATH 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA
PE=2 SV=1
Length = 206
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 153/159 (96%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKTKRGA ALARLK +EGVP PYDK+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
KRMV+PDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIK 159
>sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC
PE=2 SV=1
Length = 206
Score = 306 bits (783), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 143/159 (89%), Positives = 152/159 (95%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGICAKRVVVD RHHMLGRLAS AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKTKRGAAALARLK +EG+P PYDK+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIK 159
>sp|O65055|RL13A_PICMA 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1
Length = 206
Score = 292 bits (747), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 150/158 (94%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+
Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKTKRGAAALA L+A+EGVP PYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRK 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
KRMVIPDALKVLRLQ GHKYCLLGRL+ EVGW+++DTI
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTI 158
>sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1
Length = 205
Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/159 (87%), Positives = 149/159 (93%), Gaps = 1/159 (0%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60
MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKV 120
RFLRKRMNTKPSHGPIH AP+KIFWRTVRGMIPHKTKRG ALARLK YEG+P P+DK
Sbjct: 61 RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 119
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
KR+V+PDALKVLRLQKGHKYCLLG+L+SEVGWNYYDTI+
Sbjct: 120 KRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIK 158
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1
Length = 200
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/149 (69%), Positives = 124/149 (83%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+ FL+KRMNT
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
P GP HFR+PA+I WRT+RGMIPHKT RGAAAL RLKA+EGVP PYDK+KRMVIP AL
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 130 KVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
+VLRL+ G K+C+LGRLA+EVGW + D +
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLV 152
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2
SV=3
Length = 203
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 116/143 (81%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3
Length = 203
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 116/143 (81%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2
Length = 203
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 116/143 (81%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3
Length = 203
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 116/143 (81%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2
Length = 203
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 115/143 (80%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK +G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
Length = 203
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 115/143 (80%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK +G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-16
PE=3 SV=1
Length = 202
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 116/148 (78%), Gaps = 1/148 (0%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG R K+KY +LRK P
Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67
Query: 72 SHG-PIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
+ G P HFRAP++IF++ VRGMIPHKT RGAAAL RLK +EGVP PYDK K+MV+P AL+
Sbjct: 68 TRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALR 127
Query: 131 VLRLQKGHKYCLLGRLASEVGWNYYDTI 158
VLRLQ G K+C +GRL+SEVGW Y D +
Sbjct: 128 VLRLQPGRKFCTVGRLSSEVGWKYEDVV 155
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2
SV=1
Length = 204
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 117/155 (75%)
Query: 5 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLR 64
+G K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG R K+K+M FLR
Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMV 124
KR N P+ GP HFRAP+KI W+TVRGMIPHKT+RG +AL RL+AY+G P PYD +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
+P AL+V L+ G KYC +GRL+ EVGW Y D +R
Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVR 156
>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2
Length = 203
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 114/143 (79%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+ Y+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP FRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
+RL+ K+ LGRLA EVGW Y
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKY 149
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a
PE=2 SV=1
Length = 189
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 109/135 (80%)
Query: 20 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79
+LGRLA+IVA E+L G KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFR
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 80 APAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHK 139
AP++IFWRTVRGM+PHKTKRG AAL RLK ++GVP PYDK KRMV+P ALK++RL+ K
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120
Query: 140 YCLLGRLASEVGWNY 154
+ LLGRLA EVGW Y
Sbjct: 121 FALLGRLAHEVGWKY 135
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A
PE=1 SV=1
Length = 205
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 121/155 (78%)
Query: 5 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLR 64
+G+ + VV+D R H+LGRLAS+VAK LL G KV VRCEE+ +SG R K+K++ +LR
Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMV 124
KR N P+ GP HFRAP++IF++ VRGMIPHKTKRG AALARL+ ++G+P+PYDK +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
+P A++VL L+ KYC +GRL+ EVGW+Y D I+
Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIK 156
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A
PE=2 SV=1
Length = 204
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 116/155 (74%)
Query: 5 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLR 64
+G K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG R K+K+M FLR
Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMV 124
KR N P+ GP HFRAP+KI W+TVRGMIPHKT+RG AL RL++Y+G P PYD +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159
+P AL+V L+ G KYC +GRL+ EVGW Y + +R
Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVR 156
>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16a PE=1 SV=1
Length = 197
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 115/149 (77%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
PS G HFRAP++IF + VRGM+PHKT RG AAL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
+VLRL+ G KYC +GRL+SEVGW Y D +
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIV 154
>sp|O42991|RL16B_SCHPO 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16b PE=1 SV=1
Length = 197
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 115/149 (77%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
PS G HFRAP++IF + VRGM+PHKT RG AAL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
+VLRL+ G KYC +GRL+SEVGW Y D +
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIV 154
>sp|P26784|RL16A_YEAST 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3
Length = 199
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 111/147 (75%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG R K+KY FLRK
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
+ GP HFRAP++IF++ +RGM+ HKT RG AAL RLK +EG+P PYDK KR+V+P AL+V
Sbjct: 67 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 126
Query: 132 LRLQKGHKYCLLGRLASEVGWNYYDTI 158
LRL+ G KY LG+L++ VGW Y D +
Sbjct: 127 LRLKPGRKYTTLGKLSTSVGWKYEDVV 153
>sp|Q95307|RL13A_PIG 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2
SV=2
Length = 137
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 110/135 (81%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT P
Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
S GP HFRAP++IFWRTVRGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 63 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 122
Query: 132 LRLQKGHKYCLLGRL 146
+RL+ K+ LGRL
Sbjct: 123 VRLKLTGKFXYLGRL 137
>sp|O43004|RL16C_SCHPO 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16c PE=3 SV=1
Length = 197
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 112/149 (75%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
PS G HFRAP++IF + VRGM+PHKT RG AL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
+VLRL+ KYC +GRL+SEVGW Y + +
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIV 154
>sp|Q27389|RL13A_CAEEL 60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2
SV=1
Length = 202
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 6 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRK 65
G+ + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG R K+KYM FLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 66 RMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVI 125
R N P+ G H+RAP KIFWRTVRGM+PHKT RG AL L+AYEGVPA Y K K +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHA 121
Query: 126 PDALKVLRLQKGHKYCLLGRLASEVGWNYYDTI 158
P A + RLQ K+C++GRL+ EVGW + D +
Sbjct: 122 PSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVV 153
>sp|Q553M7|RL13A_DICDI 60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a
PE=1 SV=1
Length = 187
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 110/145 (75%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+ FL MNT
Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNT 64
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
+ G H R+P+KIFWR VRGM+PHKT RG AAL +K +EGVPAPYDKVKR+V+P AL
Sbjct: 65 NHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSAL 124
Query: 130 KVLRLQKGHKYCLLGRLASEVGWNY 154
+V++L KY +L RL+ EVGW Y
Sbjct: 125 RVVKLNTTRKYTVLSRLSQEVGWKY 149
>sp|P26785|RL16B_YEAST 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3
Length = 198
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 109/147 (74%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG R K+KY FLRK
Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
+ GP HFRAP++I ++ +RGM+ HKT RG AAL RLK +EG+P PYDK KR+V+P AL+V
Sbjct: 66 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRV 125
Query: 132 LRLQKGHKYCLLGRLASEVGWNYYDTI 158
LRL+ G KY LG+L++ VGW Y D +
Sbjct: 126 LRLKPGRKYTTLGKLSTSVGWKYEDVV 152
>sp|P0DJ15|RL13A_TETTS 60S ribosomal protein L13a OS=Tetrahymena thermophila (strain
SB210) GN=RPL13A PE=1 SV=1
Length = 198
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 107/143 (74%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLAS VAKELL+GQ++V VR E I +SG L R ++K+ FL K MN
Sbjct: 4 KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNH 63
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
P G HFRAP++IFWR VRGM+PHKT +GAAAL RLK +EG+P PYD+VK+ V+ DAL
Sbjct: 64 NPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDAL 123
Query: 130 KVLRLQKGHKYCLLGRLASEVGW 152
KV RL+ C LG L++ VGW
Sbjct: 124 KVQRLRNSRPVCKLGDLSASVGW 146
>sp|Q8TT43|RL13_METAC 50S ribosomal protein L13P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl13p PE=3
SV=1
Length = 143
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMN 68
K V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R+R
Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGA 61
Query: 69 TKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDA 128
T+ GP + P +I RT+RGM+P+K RG A++RLK Y GVP + + IPDA
Sbjct: 62 TE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA 119
Query: 129 LKVLRLQKGHKYCLLGRLASEVGWNY 154
+RL +Y LG ++ ++G +
Sbjct: 120 --DMRLLSSSRYVELGEVSQKMGSKF 143
>sp|Q46CK6|RL13_METBF 50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl13p PE=3 SV=1
Length = 140
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
Query: 12 VVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTK 70
V+DA +LGRLAS VAK+LL+G +++ V E+ +SG +K R R+R +T+
Sbjct: 2 TVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRA-TTLKEYRETRERGSTE 60
Query: 71 PSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
GP + P +I RT+RGM+P+K RG A++RLK Y GVP + + I DA
Sbjct: 61 --FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA-- 116
Query: 131 VLRLQKGHKYCLLGRLASEVGWNY 154
+RL KY LG ++ ++G +
Sbjct: 117 DMRLLSSSKYIELGEVSQKMGSKF 140
>sp|O29137|RL13_ARCFU 50S ribosomal protein L13P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl13p PE=3 SV=1
Length = 156
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
V+DA H+LGRL+S +AK LLNG+++V V E+ ++G + M + R+ K
Sbjct: 17 TVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSK 73
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP R P +IF RTVRGM+P K+ RG A RL+ + GVP + I DAL +
Sbjct: 74 EKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-L 132
Query: 132 LRLQKGHKYCLLGRLASEVGW 152
++ K KY L ++ +G+
Sbjct: 133 EKVSKTDKYVTLAEVSRYLGF 153
>sp|Q8PW45|RL13_METMA 50S ribosomal protein L13P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl13p PE=3 SV=2
Length = 140
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 6/144 (4%)
Query: 12 VVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTK 70
V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R R T+
Sbjct: 2 TVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE 60
Query: 71 PSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
GP + P +I RT+RGM+P+K RG A++RLK Y GVP + I DA
Sbjct: 61 --FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA-- 116
Query: 131 VLRLQKGHKYCLLGRLASEVGWNY 154
+RL +KY LG ++ ++G +
Sbjct: 117 DMRLLSSNKYVELGEVSQKMGSKF 140
>sp|Q8TVB6|RL13_METKA 50S ribosomal protein L13P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl13p PE=3 SV=1
Length = 159
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 7/144 (4%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
V+DA + +LGRLAS+VAK +L G+++ + E+ ++G ++ +L+K P
Sbjct: 16 TVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDP 72
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP + R P IF R VRGM+P KTKRG A RL+AY G P ++ + P+ +
Sbjct: 73 KKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAE 130
Query: 132 LRLQK-GH-KYCLLGRLASEVGWN 153
+ + GH Y LG L+ E+G+
Sbjct: 131 ADMSRLGHLWYVTLGELSEELGYQ 154
>sp|O26146|RLSX_METTH Fused L13/S9 ribosomal protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl13p/rps9p PE=3 SV=1
Length = 282
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKY-MRFLRKRMNTK 70
++++ H+LGRLAS+V+K+LL G++V+ + E+I ++G KY R R ++
Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63
Query: 71 PSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
GP + R P IF RTVRGM+P+K +G A LKAY G+P + + + IPDA K
Sbjct: 64 RRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-K 122
Query: 131 VLRLQKGHKYCLLGRLASEVG 151
++KG + LG ++ +G
Sbjct: 123 AGSIKKGME---LGEISELLG 140
>sp|Q12TI6|RL13_METBU 50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl13p PE=3 SV=1
Length = 139
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
V+DA ++GRLAS VAK LL+G++V V E +SG V +Y + + M T+
Sbjct: 2 TVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYD--VIRNMGTR- 58
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP R P +I RTVRGM+P+K RG A+ RLK Y G+P Y + + + A ++
Sbjct: 59 EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSVEGA-EM 117
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
RL +KY +G ++ ++G +
Sbjct: 118 TRLSS-NKYVTIGDVSRQLGSKF 139
>sp|Q5JJF6|RL13_PYRKO 50S ribosomal protein L13P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl13p PE=3 SV=1
Length = 142
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVL 132
GP + + +I RTVRGM+P KT RG A RLK Y GVP ++ + I +A +
Sbjct: 63 RGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMS 121
Query: 133 RLQKGHKYCLLGRLASEVGWNY 154
RL KY +G +A +G +
Sbjct: 122 RLAT-PKYVTVGEVAKFLGGKF 142
>sp|Q3IQT4|RL13_NATPD 50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl13p PE=3 SV=1
Length = 144
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV+DAR +LGR+AS VA+ L+G+++ V E+ ++G + M RKR
Sbjct: 10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITG----SEDDIMEVYRKRDEVGS 65
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP + + P +IF R+VRGM+P+KT RG A ++ Y G PY++ + V+ D +
Sbjct: 66 DRGPRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMG--NPYEEAE--VLEDT-SL 120
Query: 132 LRLQKGHKYCLLGRLASEVGWN 153
RL K+ LG ++ +G N
Sbjct: 121 DRLSN-IKFVSLGEVSENLGAN 141
>sp|Q8U0E6|RL13_PYRFU 50S ribosomal protein L13P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl13p PE=1 SV=1
Length = 142
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVL 132
GP + + +I RT+RGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVS 121
Query: 133 RLQKGHKYCLLGRLASEVGWNY 154
RL + KY +G +A +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|Q9V196|RL13_PYRAB 50S ribosomal protein L13P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl13p PE=3 SV=1
Length = 142
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVL 132
GP + + +I RT+RGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLASEVGWNY 154
RL + KY +G +A +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|Q6NVV1|R13AX_HUMAN Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens
PE=5 SV=1
Length = 102
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 92 MIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 151
M+ HKTKRG A+L LK ++G+P PYDK KRMV+P ALKV+RL+ K+ LLGR A EV
Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVR 60
Query: 152 WNY 154
W Y
Sbjct: 61 WKY 63
>sp|O59300|RL13_PYRHO 50S ribosomal protein L13P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl13p PE=1 SV=1
Length = 142
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVL 132
GP + + +I RT+RGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLASEVGWNY 154
RL + KY +G +A +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|P29198|RL13_HALMA 50S ribosomal protein L13P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl13p PE=1
SV=1
Length = 145
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
V+VDAR ++GR+AS VA++ L+G+ V V E ++G + KY KR++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 65
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
+G + + P IF RT+RGM+PHK +RG A ++ Y G PYD+ ++ D +
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSL 121
Query: 132 LRLQKGHKYCLLGRLASEVGWN 153
RL K+ LG ++ +G N
Sbjct: 122 DRLSN-IKFVTLGEISETLGAN 142
>sp|Q2FTN5|RL13_METHJ 50S ribosomal protein L13P OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl13p PE=3 SV=1
Length = 140
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV+D +LGRLAS VAK L G+++ V E+ +SG R Y + KR
Sbjct: 3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQ---KRQRGSR 59
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP R P I RT+RGMIP+K +RG A+ R++ Y GVP I DA K
Sbjct: 60 EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKK 119
Query: 132 LRLQKGHKYCLLGRLASEVGWNY 154
H LG +++ +G Y
Sbjct: 120 RLGNPSH--VTLGAVSTFLGAKY 140
>sp|Q18G58|RL13_HALWD 50S ribosomal protein L13P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl13p PE=3 SV=1
Length = 145
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VV++A++ ++GR+AS VA+ L G+ V V E+ ++G + M R
Sbjct: 10 VVINAQNCIVGRVASEVAQRALGGETVAIVNVEDAVITG----SEEDVMSVYETRSELGS 65
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP + P IF R VRGM+P+K+ RG AL+ ++ Y G PYD + D +
Sbjct: 66 DQGPAYPSRPDGIFKRAVRGMLPYKSDRGREALSNVRTYVG--NPYDDDGEAI--DGTTL 121
Query: 132 LRLQKGHKYCLLGRLASEVG 151
RL K+ LG +++ +G
Sbjct: 122 DRLSN-IKFLSLGEVSANLG 140
>sp|Q9HQJ3|RL13_HALSA 50S ribosomal protein L13P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl13p PE=3 SV=1
Length = 145
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VVVDAR ++GR+AS VA+ L G +V V E+ ++G + R R N
Sbjct: 10 VVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGS 65
Query: 72 SHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131
GP + + P IF R +RGM+P+K G AL ++ Y G P D + D +
Sbjct: 66 DRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNPMDEDG----DVLDGTSL 121
Query: 132 LRLQKGHKYCLLGRLASEVGWN 153
RL ++ L ++ E+G N
Sbjct: 122 DRLST-IRFVTLSEVSEELGAN 142
>sp|Q2NFZ8|RL13_METST 50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl13p PE=3 SV=1
Length = 142
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKY-MRFLRKRMNTK 70
++D +LGRLAS V+K LL+G+++ + E+I +SG KY R R ++
Sbjct: 3 TIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNP 62
Query: 71 PSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVP 114
GP + R P IF RTVRGMIP++ G AA LK G+P
Sbjct: 63 RDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIP 106
>sp|Q8ZYQ1|RL13_PYRAE 50S ribosomal protein L13P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl13p PE=3 SV=1
Length = 187
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 9 AKRVVVDARHHMLGRLASIVAKELLN--GQKVVAVRCEEICMSGGLVRQKMKYMRFLRK- 65
A V+VDA H+ GRLA+ +AK LL ++V V E++ ++G +KM F RK
Sbjct: 16 AGEVIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKI 72
Query: 66 ---RMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVK 121
R + P GP R P ++F R VRGM+P K++ G +AL RL+ Y +P + K
Sbjct: 73 SEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRK 132
Query: 122 RMV---IPDALKVLRLQKGHKYCLL 143
R+V +P+A LRL+ +Y L
Sbjct: 133 RLVLYEVPEAK--LRLRPLLQYTTL 155
>sp|Q96YW2|RL13_SULTO 50S ribosomal protein L13P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl13p PE=3 SV=1
Length = 146
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
VVV+A + +LGR+A+ +AK L+ G++VV V E+ +SG R Y R P
Sbjct: 6 VVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNP 65
Query: 72 SHGPIHF-RAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
I R P I RTVRGM+P K K G L + G+PA Y K K+M+ +
Sbjct: 66 EKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDAD 123
Query: 131 VLRLQKGHKYCLLGRLASEVG 151
V RL+ KY +G L+ +G
Sbjct: 124 VKRLK--GKYITVGELSKLLG 142
>sp|P95991|RL13_SULSO 50S ribosomal protein L13P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13p PE=3 SV=1
Length = 149
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71
V+++A +LGR+AS V + L G+KV+ V E+ +SG R Y L + P
Sbjct: 10 VIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNP 69
Query: 72 SHGPIHF-RAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130
I R+P I RT+RGM+P K+ +G L +K Y GVP ++ + + PD+
Sbjct: 70 YRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-D 127
Query: 131 VLRLQKGHKYCLLGRLASEVGWN 153
V RL+ KY + ++ E+GW+
Sbjct: 128 VSRLK--GKYVTVEVVSKELGWS 148
>sp|A1RSE1|RL13_PYRIL 50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl13p PE=3 SV=1
Length = 185
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 12 VVVDARHHMLGRLASIVAKELLN--GQKVVAVRCEEICMSGGLVRQKMKYMRFLRK---- 65
+++DA H+ GRLA+ VAK LL ++V V E++ ++G +KM F RK
Sbjct: 17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGD---RKMVIEWFKRKISEW 73
Query: 66 RMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMV 124
R + P GP R P ++F R VRGM+P K RG +AL RL+ Y +P K++V
Sbjct: 74 RTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLV 133
Query: 125 I 125
+
Sbjct: 134 L 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,320,777
Number of Sequences: 539616
Number of extensions: 2419733
Number of successful extensions: 6977
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 6725
Number of HSP's gapped (non-prelim): 636
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)