Query 030330
Match_columns 179
No_of_seqs 153 out of 1213
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 5.3E-66 1.8E-70 429.7 9.2 159 1-159 1-159 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 1.3E-62 4.6E-67 407.3 9.8 153 7-159 1-153 (198)
3 4b6a_O 60S ribosomal protein L 100.0 2E-60 7E-65 394.4 11.3 153 7-159 2-154 (199)
4 2zkr_j 60S ribosomal protein L 100.0 2E-60 6.8E-65 395.6 7.8 154 6-159 1-154 (203)
5 3jyw_M 60S ribosomal protein L 100.0 7.7E-60 2.6E-64 385.4 4.4 149 12-160 1-149 (178)
6 1j3a_A 50S ribosomal protein L 100.0 2.3E-58 7.8E-63 365.1 10.7 136 11-154 1-142 (142)
7 1vq8_J 50S ribosomal protein L 100.0 7.8E-57 2.7E-61 357.4 10.2 138 6-154 4-143 (145)
8 3r8s_J 50S ribosomal protein L 100.0 7.8E-49 2.7E-53 310.5 7.1 119 1-130 5-141 (142)
9 3v2d_N 50S ribosomal protein L 100.0 3.3E-48 1.1E-52 306.3 6.7 114 6-130 8-139 (140)
10 2ftc_H L13MT, MRP-L13, 39S rib 100.0 2.8E-47 9.5E-52 303.4 7.8 119 2-131 6-145 (148)
11 2zjr_G 50S ribosomal protein L 100.0 1.6E-46 5.3E-51 305.5 10.0 119 2-133 34-170 (174)
12 3f1f_N 50S ribosomal protein L 100.0 3.3E-47 1.1E-51 306.7 4.2 114 6-130 31-162 (163)
13 3bbo_L Ribosomal protein L13; 100.0 1.1E-45 3.7E-50 313.4 4.0 127 1-134 101-248 (250)
14 3koj_A Uncharacterized protein 67.5 3 0.0001 30.6 2.4 22 21-42 60-81 (108)
15 4dam_A Single-stranded DNA-bin 54.7 6.9 0.00024 29.3 2.4 22 21-42 70-91 (128)
16 3vdy_A SSB, single-stranded DN 50.9 8.9 0.0003 27.6 2.4 22 20-41 56-77 (116)
17 3stb_C RNA-editing complex pro 50.9 18 0.00061 28.2 4.3 33 7-42 83-115 (148)
18 3ulp_A Single-strand binding p 48.2 9.6 0.00033 27.9 2.2 22 21-42 61-83 (124)
19 1z9f_A Single-strand binding p 47.0 12 0.0004 28.8 2.6 22 21-42 70-91 (153)
20 2vw9_A Single-stranded DNA bin 46.5 12 0.00042 27.9 2.6 22 20-41 55-76 (134)
21 3afp_A Single-stranded DNA-bin 44.5 13 0.00045 28.9 2.6 22 21-42 60-81 (168)
22 1qvc_A Single stranded DNA bin 42.5 15 0.00051 27.7 2.6 21 21-41 60-80 (145)
23 1eqq_A Single stranded DNA bin 41.8 14 0.00048 29.1 2.4 22 20-41 60-81 (178)
24 3ull_A DNA binding protein; DN 41.0 15 0.0005 27.2 2.3 22 21-42 74-96 (132)
25 3tqy_A Single-stranded DNA-bin 39.2 16 0.00056 28.1 2.4 22 21-42 63-84 (158)
26 3k7u_C MP18 RNA editing comple 38.2 17 0.00057 28.0 2.3 30 9-42 51-81 (148)
27 3eiv_A Single-stranded DNA-bin 35.7 21 0.00072 28.8 2.6 22 21-42 60-81 (199)
28 3lgj_A Single-stranded DNA-bin 34.8 20 0.00068 28.0 2.2 29 10-42 71-100 (169)
29 1id1_A Putative potassium chan 33.4 47 0.0016 23.9 4.0 30 9-43 4-34 (153)
30 1txy_A Primosomal replication 32.5 11 0.00038 26.8 0.4 23 20-42 54-76 (104)
31 3k81_C MP18 RNA editing comple 31.0 25 0.00085 27.7 2.2 29 9-41 67-96 (164)
32 3fwz_A Inner membrane protein 22.8 64 0.0022 22.9 3.1 35 5-44 4-39 (140)
33 2f1e_A Protein APAG; APAG prot 22.2 35 0.0012 25.6 1.6 15 5-19 46-60 (127)
34 1xvs_A Protein APAG; MCSG APC2 21.3 39 0.0013 25.4 1.6 15 5-19 45-59 (126)
35 4dni_A Fusion protein of RNA-e 21.1 47 0.0016 27.8 2.3 22 20-41 78-100 (257)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=5.3e-66 Score=429.74 Aligned_cols=159 Identities=89% Similarity=1.452 Sum_probs=156.4
Q ss_pred CCCCCccceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCCCCCCcCC
Q 030330 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA 80 (179)
Q Consensus 1 ~~~~~~~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~g~~~~r~ 80 (179)
||++++|+++|+||||+||+||||||+||+.|++||+|||||||+|.+||+++++|.||++|+++++++||..+++++++
T Consensus 1 ~~~~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~ 80 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA 80 (206)
T ss_dssp CCCSSSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCS
T ss_pred CccccccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccccceEE
Q 030330 81 PAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159 (179)
Q Consensus 81 P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~~~v~~ 159 (179)
|++||++|||||||+||++|+.+|+||+||+|+||||++|+++++|+++++.+++|++|||+|||||+++||||++||+
T Consensus 81 P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~Gwk~~~vv~ 159 (206)
T 3iz5_K 81 PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIR 159 (206)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTCTTHHHHHH
T ss_pred HHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHCchHHHHHH
Confidence 9999999999999998999999999999999999999999999999999999999999999999999999999999874
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=1.3e-62 Score=407.26 Aligned_cols=153 Identities=56% Similarity=0.967 Sum_probs=149.0
Q ss_pred cceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCCCCCCcCCcchhHH
Q 030330 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFW 86 (179)
Q Consensus 7 ~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~g~~~~r~P~~Il~ 86 (179)
+.++|+||||+||+||||||+||+.|++||+|||||||+|.+||+++++|.||++|++++++.+|..|++++++|++||+
T Consensus 1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~ 80 (198)
T 4a17_I 1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW 80 (198)
T ss_dssp CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccccceEE
Q 030330 87 RTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159 (179)
Q Consensus 87 raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~~~v~~ 159 (179)
+||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|+||||+|||||+++||||++||+
T Consensus 81 ~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~ 153 (198)
T 4a17_I 81 RAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIE 153 (198)
T ss_dssp HHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHH
T ss_pred HHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999874
No 3
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=2e-60 Score=394.37 Aligned_cols=153 Identities=55% Similarity=0.987 Sum_probs=145.0
Q ss_pred cceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCCCCCCcCCcchhHH
Q 030330 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFW 86 (179)
Q Consensus 7 ~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~g~~~~r~P~~Il~ 86 (179)
-+++|+||||+||+||||||.||+.|+.||+|||||||+|.+||+++++|.||+++.++....+|..+++++++|++||+
T Consensus 2 s~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~ 81 (199)
T 4b6a_O 2 SSQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILY 81 (199)
T ss_dssp CCCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHH
Confidence 35789999999999999999999999999999999999999999999999999976666666666669999999999999
Q ss_pred HHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccccceEE
Q 030330 87 RTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159 (179)
Q Consensus 87 raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~~~v~~ 159 (179)
+||||||||||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|.+|||||||||+++||||++||+
T Consensus 82 ~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~ 154 (199)
T 4b6a_O 82 KAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVA 154 (199)
T ss_dssp HHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHH
T ss_pred HHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCccHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999874
No 4
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2e-60 Score=395.57 Aligned_cols=154 Identities=61% Similarity=1.055 Sum_probs=132.4
Q ss_pred ccceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCCCCCCcCCcchhH
Q 030330 6 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIF 85 (179)
Q Consensus 6 ~~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~g~~~~r~P~~Il 85 (179)
|.+++|+||||+||+||||||+||+.||.||+|||||||+|.|||+++++|.||.+|++++++.||..|++++++|++||
T Consensus 1 ~~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~ 80 (203)
T 2zkr_j 1 MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIF 80 (203)
T ss_dssp ------CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHH
T ss_pred CCCccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHH
Confidence 35789999999999999999999998888999999999999999999999999988899999999888999999999999
Q ss_pred HHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccccceEE
Q 030330 86 WRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIR 159 (179)
Q Consensus 86 ~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~~~v~~ 159 (179)
++|||||||+||++|+.+|+||+||+|+||||++|+.+++|+|+++.+++|++|||||||||+++||||++||+
T Consensus 81 ~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~ 154 (203)
T 2zkr_j 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTA 154 (203)
T ss_dssp HHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC------------
T ss_pred HHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999986
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=7.7e-60 Score=385.44 Aligned_cols=149 Identities=55% Similarity=0.990 Sum_probs=145.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCCCCCCcCCcchhHHHHHhc
Q 030330 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRG 91 (179)
Q Consensus 12 ~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~g~~~~r~P~~Il~raVrG 91 (179)
+||||+||+||||||+||++|++||+|||||||+|.+||+|+++|+||++|++++++.+|..+++++|+|++||+++|||
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccccceEEE
Q 030330 92 MIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRV 160 (179)
Q Consensus 92 MLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~~~v~~~ 160 (179)
||||||++|+.+|+|||||+|+||||++|+++++|+++++.+++|.+|||+|||||+++||||++|+++
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~~ 149 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAAA 149 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHHT
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHHH
Confidence 999889999999999999999999999999999999999999999999999999999999999999865
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=2.3e-58 Score=365.09 Aligned_cols=136 Identities=37% Similarity=0.535 Sum_probs=124.4
Q ss_pred EEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCC------CCCCcCCcchh
Q 030330 11 RVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH------GPIHFRAPAKI 84 (179)
Q Consensus 11 w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~------g~~~~r~P~~I 84 (179)
|+||||+||+||||||+||+.|++||+|||||||+|.+||+|+++|.||+ |++|||+ +++++++|++|
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------h~g~~gg~~~~~~~~~~~r~P~~i 74 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYK------QRTGLRTLTNPRRGPFYPKRSDEI 74 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHC-------------CCCSHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeee------ecCCCCCCcCCccCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999998 6777765 89999999999
Q ss_pred HHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccc
Q 030330 85 FWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 154 (179)
Q Consensus 85 l~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~ 154 (179)
|++||||||||||++|+++|+|||||+|+||||++|+.+++|.|+. .+++ ++|||||||||+++||||
T Consensus 75 i~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~ 142 (142)
T 1j3a_A 75 VRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF 142 (142)
T ss_dssp HHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred HHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence 9999999999889999999999999999999999999999999985 6775 899999999999999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=7.8e-57 Score=357.42 Aligned_cols=138 Identities=33% Similarity=0.492 Sum_probs=130.2
Q ss_pred ccceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCC--CCCCcCCcch
Q 030330 6 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPAK 83 (179)
Q Consensus 6 ~~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~--g~~~~r~P~~ 83 (179)
...++|+||||+||+||||||+||+.|++||+|||||||+|.+||+|+++|.||+ |++|||+ +++++++|++
T Consensus 4 a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~~ 77 (145)
T 1vq8_J 4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPDG 77 (145)
T ss_dssp CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHHH
T ss_pred cccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChHH
Confidence 4568899999999999999999999999999999999999999999999999998 6777765 9999999999
Q ss_pred hHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhcCCCCCeEEhhhhhHhhCccc
Q 030330 84 IFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 154 (179)
Q Consensus 84 Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l~~~~k~~~lGel~~~~Gwk~ 154 (179)
||++||||||||||++|+++|+|||||+|+||| |+++++|.|+. .+++ ++|||||||||+++||||
T Consensus 78 i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~ 143 (145)
T 1vq8_J 78 IFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK 143 (145)
T ss_dssp HHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred HHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence 999999999998799999999999999999999 89999999974 6775 899999999999999998
No 8
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=7.8e-49 Score=310.49 Aligned_cols=119 Identities=24% Similarity=0.400 Sum_probs=113.5
Q ss_pred CCCCCccceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhcccc
Q 030330 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMN 68 (179)
Q Consensus 1 ~~~~~~~~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~ 68 (179)
++++++++++|+||||+||+||||||+||++|+ +||+|||||||+|.+||+|+++|.||+ |+
T Consensus 5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht 78 (142)
T 3r8s_J 5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT 78 (142)
T ss_dssp CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence 578999999999999999999999999999999 999999999999999999999999997 89
Q ss_pred cCCCC------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhh
Q 030330 69 TKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (179)
Q Consensus 69 g~Pg~------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~ 130 (179)
||||+ +++++++|++||++|||||||+ |++||++|+||+||+|+||||++|+ |++++
T Consensus 79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hph~aq~----p~~l~ 141 (142)
T 3r8s_J 79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLPK-GPLGRAMFRKLKVYAGNEHNHAAQQ----PQVLD 141 (142)
T ss_dssp SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCS-SHHHHHHHTTEEECSSSCCSCGGGC----CEECC
T ss_pred CcCCCccccCHHHHHhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence 99986 7889999999999999999995 9999999999999999999999999 77654
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=3.3e-48 Score=306.32 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=109.7
Q ss_pred ccceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCC
Q 030330 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (179)
Q Consensus 6 ~~~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~ 73 (179)
+++++|+||||+||+||||||+||++|+ +||+|||||||+|.+||+|+++|.||+ |+||||+
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg 81 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 81 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence 8899999999999999999999999998 999999999999999999999999997 9999997
Q ss_pred ------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhh
Q 030330 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (179)
Q Consensus 74 ------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~ 130 (179)
+++++++|++||++|||||||+ |++||++|+||+||+|+||||++|+ |++++
T Consensus 82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~----p~~~~ 139 (140)
T 3v2d_N 82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 139 (140)
T ss_dssp EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGC----CEEEC
T ss_pred ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCC----CeecC
Confidence 8899999999999999999997 9999999999999999999999999 87664
No 10
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.8e-47 Score=303.43 Aligned_cols=119 Identities=22% Similarity=0.304 Sum_probs=111.8
Q ss_pred CCCCcc---ceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhcc
Q 030330 2 VSGSGI---CAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKR 66 (179)
Q Consensus 2 ~~~~~~---~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr 66 (179)
++++++ +++|+||||+||+||||||+||++|+ |||+|||||||+|.+||+|+++|.||+
T Consensus 6 ~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------ 79 (148)
T 2ftc_H 6 RAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------ 79 (148)
T ss_pred cchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------
Confidence 466666 99999999999999999999999999 999999999999999999999999997
Q ss_pred cccCCCC------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhh
Q 030330 67 MNTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKV 131 (179)
Q Consensus 67 ~~g~Pg~------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~ 131 (179)
|++|||+ +++++++|++||++|||||||+ |++|+++|+||+||+|++|||++|+ |..+++
T Consensus 80 htg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~----p~~~~i 145 (148)
T 2ftc_H 80 HTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILK----NLVEEL 145 (148)
T ss_pred eeCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhC----Ceeecc
Confidence 8999996 8999999999999999999997 7999999999999999999999999 666543
No 11
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=1.6e-46 Score=305.53 Aligned_cols=119 Identities=28% Similarity=0.402 Sum_probs=111.6
Q ss_pred CCCCccceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhccccc
Q 030330 2 VSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69 (179)
Q Consensus 2 ~~~~~~~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g 69 (179)
+++ ++++|+||||+||+||||||+||++|+ +||+|||||||+|.+||+|+++|.||+ |+|
T Consensus 34 ~k~--~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htg 105 (174)
T 2zjr_G 34 PKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTG 105 (174)
T ss_dssp CCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCS
T ss_pred cCc--ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecC
Confidence 455 899999999999999999999999999 999999999999999999999999997 999
Q ss_pred CCCC------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhh
Q 030330 70 KPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLR 133 (179)
Q Consensus 70 ~Pg~------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~ 133 (179)
|||+ +++++++|++||++|||||||+ |++|+++|+||+||+|+||||++|+ |+.+++..
T Consensus 106 ypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqk----p~~l~~~~ 170 (174)
T 2zjr_G 106 YQGGLKTETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQK----PQVLKTQP 170 (174)
T ss_dssp SCSSCCEEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCC----SCCCCCCC
T ss_pred cCCCcccccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccC----CeEEeccc
Confidence 9987 8999999999999999999997 9999999999999999999999999 66555433
No 12
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=3.3e-47 Score=306.65 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=109.0
Q ss_pred ccceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhcccccCCCC
Q 030330 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (179)
Q Consensus 6 ~~~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~kr~~g~Pg~ 73 (179)
+++++|+||||+||+||||||+||++|+ |||+|||||||+|.+||+|+++|.||+ |+||||+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg 104 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 104 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence 7899999999999999999999999998 999999999999999999999999997 9999996
Q ss_pred ------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhh
Q 030330 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (179)
Q Consensus 74 ------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~ 130 (179)
+++++++|++||++|||||||+ |++|+++|+||+||+|+||||++|+ |++++
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~----P~~l~ 162 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 162 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCC----CBCC-
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence 7889999999999999999997 8999999999999999999999999 87764
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.1e-45 Score=313.44 Aligned_cols=127 Identities=28% Similarity=0.426 Sum_probs=103.8
Q ss_pred CCCCCc---cceeEEEEeCCCCCchhHHHHHHHHHh------------CCCEEEEEecCcccccCccchhhhHhhhhhhc
Q 030330 1 MVSGSG---ICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRK 65 (179)
Q Consensus 1 ~~~~~~---~~~~w~VIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~isG~k~~~K~~y~~~l~k 65 (179)
++++++ ++++|+||||+||+||||||+||++|+ +||+|||||||+|.+||+|+++|.||+
T Consensus 101 ~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r----- 175 (250)
T 3bbo_L 101 YPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR----- 175 (250)
T ss_dssp -----------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC-----
T ss_pred cCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE-----
Confidence 356777 599999999999999999999999998 999999999999999999999999775
Q ss_pred ccccCCCC------CCCCcCCcchhHHHHHhccCCCCChhHHHHhccCceecCCCCChhhhccccCCchhhhhhc
Q 030330 66 RMNTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRL 134 (179)
Q Consensus 66 r~~g~Pg~------g~~~~r~P~~Il~raVrGMLPkkn~~Gr~al~rLkvy~G~p~p~~~qk~~~~P~al~~~~l 134 (179)
|+||||+ +++++++|++||++|||||||+ |++|+.+|+|||||+|.+|||++|+.+++|.+++..++
T Consensus 176 -HsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~ 248 (250)
T 3bbo_L 176 -HSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV 248 (250)
T ss_dssp -CCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred -ecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence 9999996 7899999999999999999997 99999999999999999999999998888888766554
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=67.54 E-value=3 Score=30.61 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-|++|..++++|..||.|.|--
T Consensus 60 wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 60 WGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHHhCCCCCEEEEEE
Confidence 5899999999999999988753
No 15
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=54.65 E-value=6.9 Score=29.26 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-|++|..++++|..||.|.|.-
T Consensus 70 wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 70 NRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEE
T ss_pred EcHHHHHHHHhcCCCCEEEEEE
Confidence 4789999999999999998864
No 16
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=50.88 E-value=8.9 Score=27.63 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHhCCCEEEEE
Q 030330 20 MLGRLASIVAKELLNGQKVVAV 41 (179)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (179)
..|++|..+++.|..||.|.|.
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~ 77 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVS 77 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEE
Confidence 3589999999999999988875
No 17
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=50.85 E-value=18 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=27.8
Q ss_pred cceeEEEEeCCCCCchhHHHHHHHHHhCCCEEEEEe
Q 030330 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 7 ~~~~w~VIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-..+|+-|=+-| |.||..+.+.|..|++|+|.-
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 356788887777 899999999999999988753
No 18
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=48.23 E-value=9.6 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.1
Q ss_pred ch-hHHHHHHHHHhCCCEEEEEe
Q 030330 21 LG-RLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LG-RLAS~VAk~Ll~Gd~VVVVN 42 (179)
-| ++|..++++|..|+.|.|.=
T Consensus 61 wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 61 YDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEchHHHHHHhhcCCCCEEEEEE
Confidence 56 89999999999999988853
No 19
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=46.96 E-value=12 Score=28.84 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-|++|..++++|..|+.|.|.-
T Consensus 70 wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 70 FGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECHHHHHHHhhCCCCCEEEEEE
Confidence 4889999999999999988753
No 20
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=46.50 E-value=12 Score=27.86 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHhCCCEEEEE
Q 030330 20 MLGRLASIVAKELLNGQKVVAV 41 (179)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (179)
..|++|..+++.|..||.|.|.
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEE
Confidence 3589999999999999888775
No 21
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=44.47 E-value=13 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-|++|..+++.|..|+.|+|.=
T Consensus 60 wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 60 WREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEE
T ss_pred ehHHHHHHHHhCCCCCEEEEEE
Confidence 4899999999999999988863
No 22
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=42.55 E-value=15 Score=27.73 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHhCCCEEEEE
Q 030330 21 LGRLASIVAKELLNGQKVVAV 41 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVV 41 (179)
.|++|..+++.|..||.|.|.
T Consensus 60 wg~~Ae~~~~~l~KG~~V~V~ 80 (145)
T 1qvc_A 60 FGKLAEVASEYLRKGSQVYIE 80 (145)
T ss_dssp ETHHHHHHHHHCCTTCEEEEE
T ss_pred ehHHHHHHHHhcCCCCEEEEE
Confidence 568999999999999998875
No 23
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=41.81 E-value=14 Score=29.10 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHhCCCEEEEE
Q 030330 20 MLGRLASIVAKELLNGQKVVAV 41 (179)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (179)
..|++|..++++|..|+.|.|.
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEEC
T ss_pred EccHHHHHHHHhcCCCCEEEEE
Confidence 3578999999999999888774
No 24
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=40.96 E-value=15 Score=27.23 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.4
Q ss_pred ch-hHHHHHHHHHhCCCEEEEEe
Q 030330 21 LG-RLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LG-RLAS~VAk~Ll~Gd~VVVVN 42 (179)
.| ++|..++++|..|+.|.|.-
T Consensus 74 wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 74 FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EchHHHHHHHhhCCCCCEEEEEE
Confidence 45 69999999999999988753
No 25
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=39.21 E-value=16 Score=28.07 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
.|++|..+++.|..|+.|.|.=
T Consensus 63 wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 63 FNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHhhcCCCCEEEEEE
Confidence 6889999999999999888753
No 26
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=38.19 E-value=17 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCCchhH-HHHHHHHHhCCCEEEEEe
Q 030330 9 AKRVVVDARHHMLGRL-ASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 9 ~~w~VIDA~g~iLGRL-AS~VAk~Ll~Gd~VVVVN 42 (179)
..|+=|-+ .|++ |..++++|..|+.|.|.-
T Consensus 51 t~w~~vv~----wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 51 KDHHTIRC----FGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp EEEEEEEE----ESHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----ECcHHHHHHHhhCCCCCEEEEEE
Confidence 34555544 4676 999999999999998864
No 27
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=35.71 E-value=21 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHhCCCEEEEEe
Q 030330 21 LGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
-|+||..++++|..|+.|+|.=
T Consensus 60 wgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 60 WRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHHhcCCCCEEEEEE
Confidence 5789999999999999998853
No 28
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=34.76 E-value=20 Score=28.00 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCchh-HHHHHHHHHhCCCEEEEEe
Q 030330 10 KRVVVDARHHMLGR-LASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 10 ~w~VIDA~g~iLGR-LAS~VAk~Ll~Gd~VVVVN 42 (179)
.|+=|-+ -|+ +|..++++|..|+.|.|.-
T Consensus 71 ~~i~vv~----wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 71 EWHSVVV----FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEE----eCHHHHHHHHHhCCCCCEEEEEE
Confidence 4554444 467 9999999999999988753
No 29
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=33.38 E-value=47 Score=23.87 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCchhHHHHHHHHHh-CCCEEEEEec
Q 030330 9 AKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRC 43 (179)
Q Consensus 9 ~~w~VIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNa 43 (179)
++++|+ | .|++++.+|+.|. .|..|++|.-
T Consensus 4 ~~vlI~---G--~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 4 DHFIVC---G--HSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp SCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEE---C--CCHHHHHHHHHHHHCCCCEEEEEC
Confidence 456666 4 3899999999886 6888888864
No 30
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=32.51 E-value=11 Score=26.76 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.7
Q ss_pred CchhHHHHHHHHHhCCCEEEEEe
Q 030330 20 MLGRLASIVAKELLNGQKVVAVR 42 (179)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (179)
..|++|..++++|..|+.|.|.-
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEEE
Confidence 56889999999999999988753
No 31
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=31.01 E-value=25 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCCchhH-HHHHHHHHhCCCEEEEE
Q 030330 9 AKRVVVDARHHMLGRL-ASIVAKELLNGQKVVAV 41 (179)
Q Consensus 9 ~~w~VIDA~g~iLGRL-AS~VAk~Ll~Gd~VVVV 41 (179)
..||=|-+ .|++ |..++++|..|+.|.|.
T Consensus 67 Tdw~~Vv~----wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 67 KDHHTIRC----FGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp CEEEEEEE----CCHHHHHHHHHHCCTTCEEEEC
T ss_pred eEEEEEEE----ECCHHHHHHHhhcCCCCEEEEE
Confidence 45666654 4678 99999999999998763
No 32
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.78 E-value=64 Score=22.93 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=25.5
Q ss_pred CccceeEEEEeCCCCCchhHHHHHHHHHh-CCCEEEEEecC
Q 030330 5 SGICAKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRCE 44 (179)
Q Consensus 5 ~~~~~~w~VIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNae 44 (179)
..+..+++|+= .|+++..+|+.|. .|..|+++.-+
T Consensus 4 ~~~~~~viIiG-----~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 4 VDICNHALLVG-----YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCCSCEEEEC-----CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccCCCCEEEEC-----cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 33445555553 4999999999886 69889998754
No 33
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=22.22 E-value=35 Score=25.58 Aligned_cols=15 Identities=7% Similarity=0.085 Sum_probs=12.5
Q ss_pred CccceeEEEEeCCCC
Q 030330 5 SGICAKRVVVDARHH 19 (179)
Q Consensus 5 ~~~~~~w~VIDA~g~ 19 (179)
+-..|.|.|.||+|+
T Consensus 46 QL~sRhW~Itd~~g~ 60 (127)
T 2f1e_A 46 RLVARHWQITDGNGR 60 (127)
T ss_dssp EEEEEEEEEEETTSC
T ss_pred EEEeceEEEEeCCCC
Confidence 456799999999986
No 34
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=21.34 E-value=39 Score=25.36 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=12.5
Q ss_pred CccceeEEEEeCCCC
Q 030330 5 SGICAKRVVVDARHH 19 (179)
Q Consensus 5 ~~~~~~w~VIDA~g~ 19 (179)
+-..|.|.|.||+|+
T Consensus 45 QL~sRhW~Itd~~g~ 59 (126)
T 1xvs_A 45 QLMSRRWLITDADGK 59 (126)
T ss_dssp EEEEEEEEEEETTCC
T ss_pred EEEecEEEEEeCCCC
Confidence 446799999999986
No 35
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=21.08 E-value=47 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.4
Q ss_pred Cch-hHHHHHHHHHhCCCEEEEE
Q 030330 20 MLG-RLASIVAKELLNGQKVVAV 41 (179)
Q Consensus 20 iLG-RLAS~VAk~Ll~Gd~VVVV 41 (179)
..| ++|..++++|..|+.|.|-
T Consensus 78 ~wg~k~AE~~~~yl~kG~~V~Ve 100 (257)
T 4dni_A 78 VFDSDYSSRVKEQLRDGEWFLVT 100 (257)
T ss_dssp ECSHHHHHHHHHHCCTTCEEEEE
T ss_pred EECCHHHHHHHHhccCCCEEEEE
Confidence 359 9999999999999998874
Done!