RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030330
(179 letters)
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 143 bits (362), Expect = 4e-45
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
V+VDAR ++GR+AS VA++ L+G+ V V E ++G ++ + + KR++
Sbjct: 5 ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDI 60
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
+G + + P IF RT+RGM+PHK +RG A ++ Y G PYD+ ++ +L
Sbjct: 61 GNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSL 118
Query: 130 KVLRLQKGHKYCLLGRLASEVGWN 153
L K+ LG ++ +G N
Sbjct: 119 DRL---SNIKFVTLGEISETLGAN 139
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 138 bits (348), Expect = 4e-43
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVL 132
GP + + +I RT+RGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLASEVGWNY 154
RL + KY +G +A +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 90.8 bits (225), Expect = 2e-24
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 12 VVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKY 59
VVVDA LGRLA+++A + G VV + ++ ++G + K+
Sbjct: 13 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 72
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + P ++ V GM+P K ++G A RLK Y G P+
Sbjct: 73 RYTGYQGGLKTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSA 131
Query: 120 VKRMVIPDALKVLRL 134
K P LK L
Sbjct: 132 QK----PQVLKTQPL 142
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 88.5 bits (219), Expect = 1e-23
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQK------------VVAVRCEEICMSGGLVRQKMKY 59
VVDA LGRLA+ +A+ L K ++ + +++ ++G K+ Y
Sbjct: 16 YVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYY 75
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + R P ++ V+GM+P K G A +LK Y G +
Sbjct: 76 HHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAA 134
Query: 120 VKRMVI 125
+ V+
Sbjct: 135 QQPQVL 140
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 88.2 bits (218), Expect = 2e-23
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQK------------VVAVRCEEICMSGGLVRQKMKY 59
V++DA LGRLA+ +A L + VV V ++I ++G + QK+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
K + P ++ V+GM+P K G RLK Y G P+
Sbjct: 74 RYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQA 132
Query: 120 VKRMVI 125
+ +
Sbjct: 133 QRPEKL 138
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 339
Score = 25.8 bits (56), Expect = 2.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGG 51
I V+V L +A V + L ++V+ + C + G
Sbjct: 280 IINGAVLVPTYDSHLDAVALSVMQGLFPDREVIGIDCRPLVKQHG 324
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 25.2 bits (55), Expect = 5.2
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 57 MKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAP 116
+ YM R ++N P+ P+ F+ + V T G A + PAP
Sbjct: 350 LLYMYNTRVQVNYGPTGEPLDFQIGRNQYDCNVFRADF-ATGTGYNGWATIDVEYRDPAP 408
Query: 117 YDKVKRMV 124
Y +R +
Sbjct: 409 YVHAQRYI 416
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 24.7 bits (53), Expect = 6.7
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 30 KELLNGQKVVAVRCEEICMSGG 51
++ ++VV + C ++ G
Sbjct: 313 QQCFPKREVVGIDCSDLIWGLG 334
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
mutans [TaxId: 1309]}
Length = 369
Score = 24.7 bits (53), Expect = 8.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 30 KELLNGQKVVAVRCEEICMSGG 51
+E+ +KVV VR EEI GG
Sbjct: 335 QEMFPDRKVVGVRTEEIAYGGG 356
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.440
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,871
Number of extensions: 31922
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 15
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)