Query 030331
Match_columns 179
No_of_seqs 163 out of 1159
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 3.5E-17 1.2E-21 113.8 9.5 68 25-92 1-68 (80)
2 1am9_A Srebp-1A, protein (ster 99.7 3.9E-17 1.3E-21 114.1 6.9 67 24-92 5-71 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.7 1.5E-16 5.1E-21 112.5 8.7 68 24-91 5-72 (88)
4 1hlo_A Protein (transcription 99.7 1.2E-16 4.2E-21 110.9 7.9 68 23-91 10-77 (80)
5 1nkp_B MAX protein, MYC proto- 99.7 1.7E-16 5.9E-21 110.8 8.6 67 25-92 2-68 (83)
6 1a0a_A BHLH, protein (phosphat 99.6 6.7E-17 2.3E-21 107.6 2.2 56 25-80 2-61 (63)
7 3u5v_A Protein MAX, transcript 99.6 4E-16 1.4E-20 107.4 2.8 61 24-84 4-65 (76)
8 1an4_A Protein (upstream stimu 99.6 5.7E-16 2E-20 103.4 2.5 57 24-80 4-63 (65)
9 4ati_A MITF, microphthalmia-as 99.6 5.2E-15 1.8E-19 109.8 7.9 65 24-88 26-91 (118)
10 2ql2_B Neurod1, neurogenic dif 99.5 1.2E-14 4.1E-19 95.7 7.1 58 24-81 1-58 (60)
11 4h10_B Circadian locomoter out 99.5 7.7E-15 2.6E-19 99.6 5.2 59 23-83 6-64 (71)
12 1mdy_A Protein (MYOD BHLH doma 99.5 3.3E-14 1.1E-18 95.8 4.5 57 23-80 10-66 (68)
13 4h10_A ARYL hydrocarbon recept 99.4 3.3E-14 1.1E-18 97.1 2.2 56 23-78 7-63 (73)
14 2lfh_A DNA-binding protein inh 99.1 8.6E-12 2.9E-16 83.4 1.5 49 30-78 19-67 (68)
15 4f3l_A Mclock, circadian locom 98.9 7.6E-10 2.6E-14 94.9 4.6 54 23-79 10-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 3.9E-09 1.3E-13 91.5 4.5 53 23-78 11-67 (387)
17 4aya_A DNA-binding protein inh 98.8 1.9E-08 6.5E-13 71.7 6.8 51 31-81 31-81 (97)
18 4ath_A MITF, microphthalmia-as 98.5 4.1E-07 1.4E-11 63.0 7.6 52 37-88 4-56 (83)
19 1zpv_A ACT domain protein; str 95.7 0.11 3.9E-06 34.7 9.2 48 128-176 6-53 (91)
20 2ko1_A CTR148A, GTP pyrophosph 93.7 0.41 1.4E-05 31.4 7.8 47 128-175 6-52 (88)
21 2nyi_A Unknown protein; protei 90.7 1.3 4.4E-05 34.1 8.4 37 128-165 94-130 (195)
22 1u8s_A Glycine cleavage system 87.9 2.7 9.2E-05 31.9 8.3 37 128-165 94-130 (192)
23 3p96_A Phosphoserine phosphata 87.2 2.5 8.5E-05 35.8 8.4 48 128-176 13-60 (415)
24 3he4_B Synzip5; heterodimeric 81.8 2.1 7.1E-05 25.0 3.7 27 65-91 4-30 (46)
25 2l5g_A GPS2 protein, G protein 77.2 5.2 0.00018 23.0 4.4 27 64-90 8-34 (38)
26 3lou_A Formyltetrahydrofolate 72.0 13 0.00044 30.7 7.5 46 128-174 11-58 (292)
27 3o1l_A Formyltetrahydrofolate 71.0 19 0.00067 29.8 8.4 45 128-173 23-69 (302)
28 2wt7_A Proto-oncogene protein 69.6 18 0.00062 22.8 6.3 43 33-91 1-43 (63)
29 2pc6_A Probable acetolactate s 69.4 13 0.00045 28.2 6.4 46 129-175 6-53 (165)
30 2oqq_A Transcription factor HY 66.0 7.5 0.00026 22.9 3.4 22 71-92 3-24 (42)
31 1zme_C Proline utilization tra 60.5 8.4 0.00029 24.1 3.3 23 70-92 43-65 (70)
32 2fgc_A Acetolactate synthase, 59.4 32 0.0011 26.8 7.0 46 129-175 31-78 (193)
33 2jee_A YIIU; FTSZ, septum, coi 58.7 14 0.00049 24.9 4.3 26 66-91 15-40 (81)
34 1kd8_B GABH BLL, GCN4 acid bas 58.3 11 0.00038 21.4 3.1 19 73-91 3-21 (36)
35 2wq1_A General control protein 58.1 12 0.0004 20.9 3.1 19 73-91 2-20 (33)
36 2er8_A Regulatory protein Leu3 56.1 7.6 0.00026 24.6 2.5 22 70-91 48-69 (72)
37 1dh3_A Transcription factor CR 55.7 13 0.00043 23.0 3.4 22 71-92 22-43 (55)
38 1gd2_E Transcription factor PA 53.7 13 0.00045 24.2 3.4 20 70-89 28-47 (70)
39 3c3g_A Alpha/beta peptide with 51.6 17 0.00058 20.2 3.1 19 73-91 2-20 (33)
40 1xkm_B Distinctin chain B; por 49.9 20 0.00068 18.4 2.9 17 66-82 6-22 (26)
41 2oxj_A Hybrid alpha/beta pepti 49.6 19 0.00065 20.2 3.1 20 73-92 3-22 (34)
42 2f06_A Conserved hypothetical 49.2 66 0.0023 22.6 7.6 37 137-173 81-117 (144)
43 1kd8_A GABH AIV, GCN4 acid bas 47.1 14 0.00048 21.0 2.3 19 73-91 3-21 (36)
44 3c3f_A Alpha/beta peptide with 45.1 25 0.00084 19.7 3.1 19 73-91 3-21 (34)
45 1jnm_A Proto-oncogene C-JUN; B 42.9 26 0.00088 21.9 3.4 24 69-92 20-43 (62)
46 2hy6_A General control protein 42.8 18 0.00063 20.3 2.3 19 73-91 3-21 (34)
47 3luy_A Probable chorismate mut 42.7 1.1E+02 0.0039 25.4 8.4 40 137-176 217-257 (329)
48 3k29_A Putative uncharacterize 42.4 80 0.0027 24.0 6.6 58 27-90 39-97 (169)
49 3m48_A General control protein 42.3 17 0.00059 20.3 2.1 19 73-91 2-20 (33)
50 2dgc_A Protein (GCN4); basic d 40.9 29 0.00099 21.9 3.4 23 69-91 28-50 (63)
51 2dtj_A Aspartokinase; protein- 38.6 1.1E+02 0.0038 22.5 7.1 37 126-162 14-50 (178)
52 1uo4_A General control protein 37.4 25 0.00085 19.7 2.3 19 73-91 3-21 (34)
53 1pyi_A Protein (pyrimidine pat 37.3 29 0.001 22.9 3.2 23 70-92 47-69 (96)
54 1t2k_D Cyclic-AMP-dependent tr 36.7 37 0.0013 21.0 3.4 22 70-91 21-42 (61)
55 2r2v_A GCN4 leucine zipper; co 36.3 41 0.0014 18.8 3.1 19 73-91 3-21 (34)
56 2bni_A General control protein 36.1 27 0.00092 19.6 2.3 19 73-91 3-21 (34)
57 1hwt_C Protein (heme activator 35.1 13 0.00046 23.8 1.1 22 69-90 56-77 (81)
58 2rrl_A FLIK, flagellar HOOK-le 34.0 1E+02 0.0034 23.4 6.1 46 118-163 102-152 (169)
59 3coq_A Regulatory protein GAL4 33.7 39 0.0013 21.8 3.4 23 70-92 44-66 (89)
60 3w03_C DNA repair protein XRCC 33.5 46 0.0016 25.7 4.1 32 61-92 142-173 (184)
61 1p3q_Q VPS9P, vacuolar protein 31.3 50 0.0017 20.4 3.2 25 31-55 3-27 (54)
62 1gmj_A ATPase inhibitor; coile 31.1 1.2E+02 0.0042 20.4 7.4 44 37-91 35-78 (84)
63 2qmw_A PDT, prephenate dehydra 30.9 1E+02 0.0034 25.0 6.0 41 136-176 197-238 (267)
64 2re1_A Aspartokinase, alpha an 30.3 77 0.0026 23.1 4.9 37 126-162 24-60 (167)
65 1pd7_B MAD1; PAH2, SIN3, eukar 28.7 69 0.0024 16.8 3.4 16 64-79 6-21 (26)
66 3mwb_A Prephenate dehydratase; 27.3 1E+02 0.0035 25.5 5.6 40 137-176 211-251 (313)
67 3fx7_A Putative uncharacterize 27.3 66 0.0022 22.2 3.6 40 36-86 46-85 (94)
68 2qmx_A Prephenate dehydratase; 27.2 1.1E+02 0.0037 24.9 5.6 41 137-177 209-250 (283)
69 1ixm_A SPO0B, protein (sporula 26.2 1.1E+02 0.0037 23.2 5.2 48 28-85 20-67 (192)
70 2wuj_A Septum site-determining 26.2 91 0.0031 19.1 3.9 29 63-91 26-54 (57)
71 1g1e_B SIN3A; four-helix bundl 25.9 49 0.0017 22.3 2.7 18 64-81 8-25 (89)
72 1e91_A Paired amphipathic heli 25.8 50 0.0017 22.0 2.8 19 64-82 5-23 (85)
73 2f06_A Conserved hypothetical 25.1 1.8E+02 0.006 20.3 7.1 28 137-164 15-42 (144)
74 2lf0_A Uncharacterized protein 24.8 1.6E+02 0.0053 21.2 5.3 54 32-88 7-60 (123)
75 3muj_A Transcription factor CO 23.1 1.5E+02 0.0053 21.7 5.2 37 40-76 96-133 (138)
76 2dt9_A Aspartokinase; protein- 22.7 1.6E+02 0.0056 21.2 5.5 37 126-162 15-51 (167)
77 1jg5_A GTP cyclohydrolase I fe 21.8 1.8E+02 0.0063 19.3 5.2 31 141-173 51-81 (83)
78 1d66_A Protein (GAL4); protein 21.8 24 0.00081 21.5 0.4 15 70-84 51-65 (66)
79 2dnr_A Synaptojanin-1; RRM dom 21.6 1.6E+02 0.0055 19.9 4.7 31 139-172 26-56 (91)
80 2lqj_A Mg2+ transport protein; 21.3 1.4E+02 0.0047 20.1 4.4 38 128-165 9-47 (94)
81 2re1_A Aspartokinase, alpha an 21.3 2.4E+02 0.008 20.4 7.5 34 137-172 115-148 (167)
82 3q4f_C DNA repair protein XRCC 20.6 1.3E+02 0.0044 23.2 4.4 31 62-92 152-182 (186)
83 3s1t_A Aspartokinase; ACT doma 20.4 2.7E+02 0.0091 20.6 6.5 35 126-160 15-49 (181)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.72 E-value=3.5e-17 Score=113.83 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=62.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 25 ~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
.|..||..||+||..||++|..|+++||......|.|.++||..|++||++|+++.+.|..+++.+..
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999877788999999999999999999999999998877653
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.69 E-value=3.9e-17 Score=114.07 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=59.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
.+|..|+.+||+||.+||+.|..|+++||.. ..|.+.++||.+||+||++|+++++.|+.+.+.+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999985 235555666999999999999999999999887765
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=1.5e-16 Score=112.49 Aligned_cols=68 Identities=16% Similarity=0.318 Sum_probs=60.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
.+|..||..||+||..||+.|..|+++||......|.|.++||..||+||+.|+++.+.+..+++.+.
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999887667888888899999999999999988877666554
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.67 E-value=1.2e-16 Score=110.93 Aligned_cols=68 Identities=22% Similarity=0.463 Sum_probs=61.9
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
..+|..|+..||+||..||+.|..|+++||.... .|.|.++||..||+||+.|++++++|+.+.+.+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998653 4788888899999999999999999999988775
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.67 E-value=1.7e-16 Score=110.81 Aligned_cols=67 Identities=22% Similarity=0.456 Sum_probs=59.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 25 ~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
+|..||..||+||..||+.|..|+++||... ..|.|.++||..||+||+.|+++++.|+.+++.+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999754 346788888999999999999999999988877654
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.63 E-value=6.7e-17 Score=107.55 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=49.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCCChhHHHHHHHHHHHHHHHHH
Q 030331 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPS----KEELSLPDQVDEAINYIKMLETKL 80 (179)
Q Consensus 25 ~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~----~~k~S~~~~l~~Ai~YIk~L~~~v 80 (179)
+|.+|+.+||+||.+||..|..|++|||...+ ..|.|+++||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999997643 247778888999999999999865
No 7
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.59 E-value=4e-16 Score=107.44 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=50.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEEL-SLPDQVDEAINYIKMLETKLKECK 84 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~-S~~~~l~~Ai~YIk~L~~~v~~L~ 84 (179)
.+|..||..||+||..||+.|..|+.+||...+.+|. |+.+||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999965455666 788899999999999999998764
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=5.7e-16 Score=103.42 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=48.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK---EELSLPDQVDEAINYIKMLETKL 80 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~---~k~S~~~~l~~Ai~YIk~L~~~v 80 (179)
.+|..|+.+||+||..||+.|..|++|||..... .|.+.++||.+||+||++||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999987642 24555556999999999999764
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=5.2e-15 Score=109.85 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=52.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK-EELSLPDQVDEAINYIKMLETKLKECKKRKE 88 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~-~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~ 88 (179)
.+|..|+.+||+||.+||+.|..|++|||...+. .|.+.++||..||+||+.||++++.|+....
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999987654 4778888899999999999999999987543
No 10
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=95.74 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=54.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 030331 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLK 81 (179)
Q Consensus 24 ~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~ 81 (179)
++|..||..||+|+..||+.|..||.+||..+...|.|+.+||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999998877899999999999999999998753
No 11
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=7.7e-15 Score=99.58 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=49.7
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKEC 83 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L 83 (179)
..+|..|+.+||+||.+||+.|..|++|||... .|.++++||..||+||++||+++.=|
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~--~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNA--RKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC--SCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 368999999999999999999999999999542 24444555999999999999987654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.47 E-value=3.3e-14 Score=95.79 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=52.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKL 80 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v 80 (179)
..+|..||..||+|+..||+.|..||.+||..+ ..|.|+.+||..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999754 568999999999999999999864
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=3.3e-14 Score=97.07 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=45.9
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhHHHHHHHHHHHHHHH
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQP-SKEELSLPDQVDEAINYIKMLET 78 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP~~~-~~~k~S~~~~l~~Ai~YIk~L~~ 78 (179)
..+|..|+.+||+||++||+.|..|++|||... ...|.++++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999652 12244445559999999999863
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=8.6e-12 Score=83.42 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 030331 30 KTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLET 78 (179)
Q Consensus 30 ~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~ 78 (179)
++.||+|+..||+.|..||.+||..+...|.|+.+||..||+||..||+
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3559999999999999999999999888899999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.91 E-value=7.6e-10 Score=94.92 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=39.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCChhHHHHHHHHHHHHHHHH
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLP-NQPSKEELSLPDQVDEAINYIKMLETK 79 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP-~~~~~~k~S~~~~l~~Ai~YIk~L~~~ 79 (179)
..+|..|+.+||+||++||..|..|++||| ...++||++| |..||+||+.|+.-
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhh
Confidence 468899999999999999999999999999 3346666666 99999999999864
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=3.9e-09 Score=91.47 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=47.3
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCChhHHHHHHHHHHHHHHH
Q 030331 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLP----NQPSKEELSLPDQVDEAINYIKMLET 78 (179)
Q Consensus 23 ~~~r~~h~~~ER~RR~~mn~~~~~LrsllP----~~~~~~k~S~~~~l~~Ai~YIk~L~~ 78 (179)
..+|.+|+.+||+||.+||..|..|++||| ...+.||+|| |..||+||+.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhc
Confidence 458999999999999999999999999999 4556777776 9999999999974
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.75 E-value=1.9e-08 Score=71.70 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 030331 31 TIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLK 81 (179)
Q Consensus 31 ~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~ 81 (179)
..||.|-..||+.|..||.+||..+...|.|+.++|.-||+||..|++-++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 446889999999999999999998777899999999999999999998764
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.50 E-value=4.1e-07 Score=62.96 Aligned_cols=52 Identities=15% Similarity=0.317 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030331 37 RDQMKNLYSTLKSLLPNQP-SKEELSLPDQVDEAINYIKMLETKLKECKKRKE 88 (179)
Q Consensus 37 R~~mn~~~~~LrsllP~~~-~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~ 88 (179)
|..||+.+..|..|||... +..|++..+||..|++||+.||+..+.+.+.-.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999753 455888899999999999999998887776443
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.66 E-value=0.11 Score=34.68 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEEEEEE
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEV 176 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti~~kv 176 (179)
+.+.+.|. +++|++.+|..+|-+.|..|++.+..+.++..+..+.+++
T Consensus 6 ~~l~v~~~-DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~ 53 (91)
T 1zpv_A 6 AIITVVGK-DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS 53 (91)
T ss_dssp EEEEEEES-CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEC-CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe
Confidence 45566665 6899999999999999999999999887776555555543
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.68 E-value=0.41 Score=31.37 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEEEEE
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAE 175 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti~~k 175 (179)
+.+.+.+. +++|.|.+|..+|.+.|+.|.+.+..+.++....+|.++
T Consensus 6 ~~l~v~~~-Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~ 52 (88)
T 2ko1_A 6 AGIRIVGE-DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52 (88)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEE-CCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence 33444443 679999999999999999999999987666333344433
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=90.66 E-value=1.3 Score=34.13 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeC
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG 165 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~ 165 (179)
..|.+.|. +++|++..|-.+|-++|+.|+++...+.+
T Consensus 94 ~iltv~g~-DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 94 YELYVEGP-DSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEEEEEeC-CCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 45666775 68999999999999999999999998776
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=87.87 E-value=2.7 Score=31.92 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=31.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeC
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG 165 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~ 165 (179)
..|.+.|. +++|++.+|..+|-++|+.|.++...+.+
T Consensus 94 ~~l~v~~~-D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 94 VEVYVESD-DKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEES-CCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEEeC-CCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 44555664 68999999999999999999999988765
No 23
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=87.16 E-value=2.5 Score=35.83 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=40.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEEEEEE
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEV 176 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti~~kv 176 (179)
+.|+++|. +++|+...|...|-++|..|++++-...++.++-.+.+.+
T Consensus 13 ~~lt~~g~-Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~ 60 (415)
T 3p96_A 13 VLITVTGV-DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC 60 (415)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcC-CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe
Confidence 55677775 6899999999999999999999999988888766665543
No 24
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=81.76 E-value=2.1 Score=25.03 Aligned_cols=27 Identities=44% Similarity=0.520 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 65 QVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 65 ~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
++.+--+||++|+++-.+|..-++-+.
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 378888999999999999988776554
No 25
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=77.19 E-value=5.2 Score=23.05 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030331 64 DQVDEAINYIKMLETKLKECKKRKESL 90 (179)
Q Consensus 64 ~~l~~Ai~YIk~L~~~v~~L~~~~~~~ 90 (179)
.+|+++-+-|..|+.+++.|++++.++
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998775
No 26
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=72.05 E-value=13 Score=30.69 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEE--eCCEEEEEEEE
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV--VGNTIFHVIHA 174 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~--~~~~v~~ti~~ 174 (179)
..++++|. +++|+..+|-..|-++|+.|++++-.+ ..+.+|..+.+
T Consensus 11 ~vLtv~c~-Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~ 58 (292)
T 3lou_A 11 FVLTLSCP-SAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF 58 (292)
T ss_dssp EEEEEEEE-SCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcC-CCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence 45667775 689999999999999999999998874 34555544443
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=70.96 E-value=19 Score=29.76 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=35.4
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEe--CCEEEEEEE
Q 030331 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIH 173 (179)
Q Consensus 128 v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~--~~~v~~ti~ 173 (179)
..++++|. +++|+...|-..|-++|+.|++++-+.. .+.+|..+.
T Consensus 23 ~iLtv~c~-DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~ 69 (302)
T 3o1l_A 23 FRLVIACP-DRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69 (302)
T ss_dssp EEEEEEEE-CCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEE
Confidence 45666775 6899999999999999999999998765 455554443
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.62 E-value=18 Score=22.76 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 33 EKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 33 ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
||++|....+...+-++ =..-..|+..|+.+++.|+.+...|.
T Consensus 1 Ekr~rrrerNR~AA~rc----------------R~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC----------------RNRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666665 12334677777777777777666554
No 29
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=69.40 E-value=13 Score=28.16 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeC--CEEEEEEEEE
Q 030331 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAE 175 (179)
Q Consensus 129 ~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~--~~v~~ti~~k 175 (179)
.+.+... +++|.|.+|..+|...|+.|.+.++.+.. +....+|.+.
T Consensus 6 ~IsV~ve-NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 6 IISLLME-NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEE-CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEe-CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 3444443 57999999999999999999999997543 5566666654
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.97 E-value=7.5 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 030331 71 NYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 71 ~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
.|+-+|+.++++|+.+..+|..
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888887776654
No 31
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=60.45 E-value=8.4 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 030331 70 INYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988877754
No 32
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=59.44 E-value=32 Score=26.79 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEEEeC--CEEEEEEEEE
Q 030331 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAE 175 (179)
Q Consensus 129 ~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~--~~v~~ti~~k 175 (179)
.+.+... +++|.|.+|..+|...|+.|.+.++.... +....||.+.
T Consensus 31 ~LsVlVe-N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 31 LVSMLVH-NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEE-CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEC-CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 3444443 57999999999999999999999987543 4566676665
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.65 E-value=14 Score=24.85 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 66 VDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 66 l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
|..||+-|.-||.++++|+.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876654
No 34
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.33 E-value=11 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677777777777666554
No 35
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=58.11 E-value=12 Score=20.94 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4677777777777666554
No 36
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=56.07 E-value=7.6 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 030331 70 INYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~~~ 91 (179)
-.||..|+++|+.|+...+.+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999998876654
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.72 E-value=13 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 030331 71 NYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 71 ~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
.|+.+|+.+|..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999887766643
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.66 E-value=13 Score=24.24 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030331 70 INYIKMLETKLKECKKRKES 89 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~ 89 (179)
-.||++|+.+|.+|+...+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46888888888887765544
No 39
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=51.64 E-value=17 Score=20.25 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4678888888877776654
No 40
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=49.88 E-value=20 Score=18.42 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030331 66 VDEAINYIKMLETKLKE 82 (179)
Q Consensus 66 l~~Ai~YIk~L~~~v~~ 82 (179)
|-+|-.|+.+|+.+++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77899999999988754
No 41
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.64 E-value=19 Score=20.19 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 030331 73 IKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~~ 92 (179)
+.+|+.+|++|-.+++++..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 56788888888877776653
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=49.23 E-value=66 Score=22.61 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEEE
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIH 173 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti~ 173 (179)
++||.+.+++++|.+.|+.|.+.-++..+++....|.
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 5799999999999999999976554423555444443
No 43
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.05 E-value=14 Score=20.98 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|..++..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4566666666666655543
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.12 E-value=25 Score=19.70 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+.+|+.+|++|-.++..+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 5677777777777666554
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.93 E-value=26 Score=21.89 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 69 AINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 69 Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
-..||.+|+.++..|+.+...|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888877666543
No 46
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=42.83 E-value=18 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677777777777666554
No 47
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=42.71 E-value=1.1e+02 Score=25.42 Aligned_cols=40 Identities=3% Similarity=0.045 Sum_probs=33.3
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEeCCEE-EEEEEEEE
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTI-FHVIHAEV 176 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v-~~ti~~kv 176 (179)
+++|.|.++|..|...|+......+-+..+.. -|.|.+.+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 257 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL 257 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE
Confidence 46999999999999999999999998887763 46666554
No 48
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=42.40 E-value=80 Score=24.04 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030331 27 IERKTIEKNRRDQ-MKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (179)
Q Consensus 27 ~~h~~~ER~RR~~-mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~ 90 (179)
......||.++.. -.+.+..||..+ |+.+.++-+...-.||+-|.+++..++...++.
T Consensus 39 l~~~e~~r~k~~~h~~~k~~qlre~~------d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 39 LRERESERDKVKNHYMQKIRQLREQL------DDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666542 334588888876 445555668889999999999999998776544
No 49
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.25 E-value=17 Score=20.27 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+.+|+.+|++|-.++..+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHH
Confidence 3467777777776666554
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.86 E-value=29 Score=21.94 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 030331 69 AINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 69 Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
-..|+.+|+.+++.|+.+...|.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888877766654
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=38.59 E-value=1.1e+02 Score=22.53 Aligned_cols=37 Identities=19% Similarity=0.008 Sum_probs=25.0
Q ss_pred CeeEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEE
Q 030331 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS 162 (179)
Q Consensus 126 ~~v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs 162 (179)
+-..|.+....+++|.+.+|++.|.+.|+.|.....+
T Consensus 14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 3444555322356899999999999999666555443
No 52
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.36 E-value=25 Score=19.72 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677778877777766554
No 53
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=37.29 E-value=29 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 030331 70 INYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
-.|+..|+++++.|+....++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998877653
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.71 E-value=37 Score=21.01 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 030331 70 INYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~~~ 91 (179)
-.|+..|+.+++.|+.+...|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777776665554
No 55
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.28 E-value=41 Score=18.83 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4667777777766665443
No 56
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=36.11 E-value=27 Score=19.58 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030331 73 IKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 73 Ik~L~~~v~~L~~~~~~~~ 91 (179)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 5678888888877766654
No 57
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=35.09 E-value=13 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030331 69 AINYIKMLETKLKECKKRKESL 90 (179)
Q Consensus 69 Ai~YIk~L~~~v~~L~~~~~~~ 90 (179)
.-.||..|+++|..|+.....+
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999998765554
No 58
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=34.03 E-value=1e+02 Score=23.42 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=36.2
Q ss_pred eEEEEEeCCeeEEEEEEcCC--C---CchHHHHHHHHHhCCcEEEEEEEEE
Q 030331 118 EIEIHEMGSNLEVILTSGVD--D---QFIFYEVIRILHQDGAEILNAKFSV 163 (179)
Q Consensus 118 ~V~V~~~~~~v~I~i~c~~~--~---~~~l~~vl~~Le~~gL~Vv~a~vs~ 163 (179)
+|.++..++.+.|.++.... + ..-+.++-+.|.+.||.+-.++|+.
T Consensus 102 ~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~ 152 (169)
T 2rrl_A 102 HISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISS 152 (169)
T ss_dssp EEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEES
T ss_pred EEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEec
Confidence 56677778888888877642 1 2358889999999999999999975
No 59
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.74 E-value=39 Score=21.80 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 030331 70 INYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 70 i~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
..|+..|+++++.|+.....+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 36999999999999998877653
No 60
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.46 E-value=46 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 61 SLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 61 S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
++.++++-+++-+..|+.+++.|+++.+.|..
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999999998887764
No 61
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=31.26 E-value=50 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 030331 31 TIEKNRRDQMKNLYSTLKSLLPNQP 55 (179)
Q Consensus 31 ~~ER~RR~~mn~~~~~LrsllP~~~ 55 (179)
.++|-+|...++-+.+|.++.|...
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4688899999999999999999764
No 62
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.09 E-value=1.2e+02 Score=20.37 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 37 RDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 37 R~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
|++..+.+..|+.-+ .+-|..=++-|+.|++.++..+.....+.
T Consensus 35 rqkekEqL~~LKkkl-----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777888888644 23377777778888888888777766664
No 63
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=30.92 E-value=1e+02 Score=24.96 Aligned_cols=41 Identities=5% Similarity=-0.065 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHHHhCCcEEEEEEEEEeCCE-EEEEEEEEE
Q 030331 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEV 176 (179)
Q Consensus 136 ~~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~-v~~ti~~kv 176 (179)
.+++|.|.++|..|...|+......+-+..+. --|.|.+.+
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 35799999999999999999999998776554 234444443
No 64
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=30.29 E-value=77 Score=23.14 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=26.6
Q ss_pred CeeEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEE
Q 030331 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS 162 (179)
Q Consensus 126 ~~v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs 162 (179)
+-..|.+..-.+++|.+.+|+.+|.++|+.|.....+
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3344555422346899999999999999988776543
No 65
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.70 E-value=69 Score=16.79 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 030331 64 DQVDEAINYIKMLETK 79 (179)
Q Consensus 64 ~~l~~Ai~YIk~L~~~ 79 (179)
.+|-+|.+|+...+.+
T Consensus 6 q~LLeAAeyLErrEre 21 (26)
T 1pd7_B 6 QMLLEAADYLERRERE 21 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5699999999876653
No 66
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=27.34 E-value=1e+02 Score=25.50 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEeCCEE-EEEEEEEE
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTI-FHVIHAEV 176 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v-~~ti~~kv 176 (179)
+++|.|.++|..|...|+......+-+..+.. -|.|.+.+
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 57999999999999999999999987765442 24444433
No 67
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.28 E-value=66 Score=22.16 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 030331 36 RRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKR 86 (179)
Q Consensus 36 RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~ 86 (179)
.|.+..+.|..|.+.+- .-.+.|-+||..|.++|+-|++.
T Consensus 46 kr~kFee~fe~l~s~l~-----------~f~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTFN-----------EFDEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHhhHHHhHHHHHHHHHhHHH
Confidence 45556666666666541 22678889999999999988864
No 68
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=27.24 E-value=1.1e+02 Score=24.95 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEeCCE-EEEEEEEEEe
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEVC 177 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~-v~~ti~~kv~ 177 (179)
+++|.|.++|..|...|+......+-+..+. --|.|.+.++
T Consensus 209 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e 250 (283)
T 2qmx_A 209 NEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI 250 (283)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred CCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence 5799999999999999999999998876654 3355554443
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=26.21 E-value=1.1e+02 Score=23.24 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 030331 28 ERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKK 85 (179)
Q Consensus 28 ~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~ 85 (179)
.-..+=|.-|....+.+..+..++-. .+ .++|.+||+++-+..+.+..
T Consensus 20 ~~~~~LR~qrHdf~NkLqvI~GLlql----~~------ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 20 ELIHLLGHSRHDWMNKLQLIKGNLSL----QK------YDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----TC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc----CC------HHHHHHHHHHHHHHHHHHHH
Confidence 34445578888999999999999843 12 89999999999888877753
No 70
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.15 E-value=91 Score=19.06 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030331 63 PDQVDEAINYIKMLETKLKECKKRKESLQ 91 (179)
Q Consensus 63 ~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~ 91 (179)
-+-|++.++-+..|.+++.+|+.+.+.+.
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888776553
No 71
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.85 E-value=49 Score=22.28 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030331 64 DQVDEAINYIKMLETKLK 81 (179)
Q Consensus 64 ~~l~~Ai~YIk~L~~~v~ 81 (179)
..+.+|++||+.++.+-+
T Consensus 8 ~~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 8 VEFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 348999999999998753
No 72
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=25.78 E-value=50 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030331 64 DQVDEAINYIKMLETKLKE 82 (179)
Q Consensus 64 ~~l~~Ai~YIk~L~~~v~~ 82 (179)
..+.+|++||+.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 4589999999999988544
No 73
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.06 E-value=1.8e+02 Score=20.26 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEe
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVV 164 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~ 164 (179)
+++|.+.+|+..|.+.|+.|-.......
T Consensus 15 d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 15 NKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp SSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 5699999999999999999988776543
No 74
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.80 E-value=1.6e+02 Score=21.19 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030331 32 IEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKE 88 (179)
Q Consensus 32 ~ER~RR~~mn~~~~~LrsllP~~~~~~k~S~~~~l~~Ai~YIk~L~~~v~~L~~~~~ 88 (179)
.|++==++++++++.++.=++.....+...+ +.+--+-|..|..+|..|.....
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~---i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADK---YAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667899999999988877665555555 77777777777777777776544
No 75
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=23.10 E-value=1.5e+02 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCCC-CCCCChhHHHHHHHHHHHHH
Q 030331 40 MKNLYSTLKSLLPNQPS-KEELSLPDQVDEAINYIKML 76 (179)
Q Consensus 40 mn~~~~~LrsllP~~~~-~~k~S~~~~l~~Ai~YIk~L 76 (179)
|.=.|+.|..++|..+. .++.-+.-||..|.+++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 55679999999997653 36777777899999988765
No 76
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.74 E-value=1.6e+02 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=25.9
Q ss_pred CeeEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEEEE
Q 030331 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS 162 (179)
Q Consensus 126 ~~v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~vs 162 (179)
+-..|.+..-.+++|.+.+++.+|.+.|+.|...+.+
T Consensus 15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 3344444332356899999999999998888766543
No 77
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=21.83 E-value=1.8e+02 Score=19.34 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEEE
Q 030331 141 IFYEVIRILHQDGAEILNAKFSVVGNTIFHVIH 173 (179)
Q Consensus 141 ~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti~ 173 (179)
.=-.||.-||..|..|++. +-+|..+..|+|
T Consensus 51 pPr~VLnKLE~~G~rVvsm--tGvgqtlVWclh 81 (83)
T 1jg5_A 51 PPRIVLDKLECRGFRVLSM--TGVGQTLVWCLH 81 (83)
T ss_dssp CHHHHHHHHHHTTCEEEEE--EEETTEEEEEEE
T ss_pred ChHHHHHHHhccCeEEEEE--ecCCceEEEEEe
Confidence 3456899999999999975 456888888876
No 78
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.77 E-value=24 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 030331 70 INYIKMLETKLKECK 84 (179)
Q Consensus 70 i~YIk~L~~~v~~L~ 84 (179)
..||..|+++++.|+
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 468999999988775
No 79
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=1.6e+02 Score=19.90 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEE
Q 030331 139 QFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVI 172 (179)
Q Consensus 139 ~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti 172 (179)
..++..+++.|..+| +|+.+.+.. |+.|.|+
T Consensus 26 ~~l~~~L~~~F~~~G-~Vi~vr~~~--d~~fVtF 56 (91)
T 2dnr_A 26 DALIDELLQQFASFG-EVILIRFVE--DKMWVTF 56 (91)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEEECS--SSEEEEE
T ss_pred HHHHHHHHHHHHhCC-CeEEEEEec--CCEEEEE
Confidence 347899999999999 899988754 4445444
No 80
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=21.33 E-value=1.4e+02 Score=20.09 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=29.9
Q ss_pred eEEEEEEcCCC-CchHHHHHHHHHhCCcEEEEEEEEEeC
Q 030331 128 LEVILTSGVDD-QFIFYEVIRILHQDGAEILNAKFSVVG 165 (179)
Q Consensus 128 v~I~i~c~~~~-~~~l~~vl~~Le~~gL~Vv~a~vs~~~ 165 (179)
..|.++|.... ..+...+++.|+..++.+-+..+..++
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~ 47 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG 47 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC
Confidence 67788997532 457888999999999999999966644
No 81
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=21.33 E-value=2.4e+02 Score=20.36 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.5
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEEEeCCEEEEEE
Q 030331 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVI 172 (179)
Q Consensus 137 ~~~~~l~~vl~~Le~~gL~Vv~a~vs~~~~~v~~ti 172 (179)
..+|.+.+++++|.+.|+.|...+ +....+.+.|
T Consensus 115 ~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 115 SHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp TCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred CCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 368999999999999999998754 3344444444
No 82
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.64 E-value=1.3e+02 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030331 62 LPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (179)
Q Consensus 62 ~~~~l~~Ai~YIk~L~~~v~~L~~~~~~~~~ 92 (179)
+-+++.-+++-|..|+.+...|+++.+.|..
T Consensus 152 irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 152 IRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999988764
No 83
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=20.42 E-value=2.7e+02 Score=20.62 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=25.3
Q ss_pred CeeEEEEEEcCCCCchHHHHHHHHHhCCcEEEEEE
Q 030331 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAK 160 (179)
Q Consensus 126 ~~v~I~i~c~~~~~~~l~~vl~~Le~~gL~Vv~a~ 160 (179)
+-..|.+..-...+|.+.+|+.+|.+.|+.|.-.+
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 33445543323568999999999999999887664
Done!