Query 030333
Match_columns 179
No_of_seqs 134 out of 148
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 19:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cura1 g.39.1.3 (A:33-63) Fou 76.9 0.35 2.5E-05 27.9 0.7 20 95-114 1-20 (31)
2 d1x6ha1 g.37.1.1 (A:44-80) Tra 72.6 0.52 3.8E-05 27.9 0.8 27 93-119 4-31 (37)
3 d1wjva1 g.37.1.2 (A:1-35) Cell 66.0 1 7.6E-05 26.4 1.1 27 90-116 7-33 (35)
4 d1lv3a_ g.39.1.9 (A:) Hypothet 61.6 1.8 0.00013 28.3 1.8 24 92-115 5-32 (65)
5 d2ctda2 g.37.1.1 (A:61-90) Zin 50.5 2.3 0.00017 24.0 0.8 13 93-105 2-14 (30)
6 d1x63a2 g.39.1.3 (A:45-76) Fou 43.5 3.4 0.00025 23.5 0.7 17 95-111 1-17 (32)
7 d1a1ia3 g.37.1.1 (A:160-187) Z 42.0 4.2 0.00031 22.6 1.0 12 93-104 3-14 (28)
8 d1vd4a_ g.41.3.1 (A:) Transcri 39.1 5.3 0.00039 25.7 1.3 15 90-104 11-25 (62)
9 d2cuqa1 g.39.1.3 (A:43-74) Fou 33.7 6.7 0.00049 22.4 1.0 18 95-112 1-18 (32)
10 d2czra1 c.52.4.1 (A:1-218) TBP 32.6 6.8 0.0005 30.6 1.1 23 92-114 145-167 (218)
11 d2cwla1 a.25.1.3 (A:1-299) Man 29.1 28 0.002 28.2 4.4 34 9-42 34-78 (299)
12 d2cu8a2 g.39.1.3 (A:38-70) Cys 29.0 8.3 0.00061 22.1 0.8 20 95-114 1-20 (33)
13 d1wjva2 g.37.1.2 (A:36-66) Cel 26.3 12 0.00089 21.1 1.2 25 92-117 1-25 (31)
14 d2d8ya2 g.39.1.3 (A:44-85) Epl 26.2 11 0.00082 22.5 1.1 17 95-111 1-17 (42)
15 d2adra2 g.37.1.1 (A:131-161) A 23.7 13 0.00095 21.0 1.0 11 94-104 2-12 (31)
16 d2dlqa2 g.37.1.1 (A:35-62) GLI 22.0 12 0.00088 20.5 0.6 8 94-101 2-9 (28)
17 d2adra1 g.37.1.1 (A:102-130) A 21.3 14 0.0011 19.8 0.8 12 93-104 2-13 (29)
18 d1jkva_ a.25.1.3 (A:) Manganes 21.3 48 0.0035 26.2 4.4 33 10-42 34-74 (266)
19 d1njqa_ g.37.1.3 (A:) SUPERMAN 20.5 18 0.0013 21.1 1.1 16 91-106 3-18 (37)
20 d1a1ia2 g.37.1.1 (A:132-159) Z 20.5 17 0.0012 19.6 1.0 12 93-104 3-14 (28)
No 1
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.86 E-value=0.35 Score=27.92 Aligned_cols=20 Identities=20% Similarity=0.680 Sum_probs=17.4
Q ss_pred eeCCCCCcccccccchhHHH
Q 030333 95 ECMNCGRSIVAGRFAPHLEK 114 (179)
Q Consensus 95 ~C~nC~R~v~a~RfA~HLek 114 (179)
.|.+|.++++.-||..|=++
T Consensus 1 vC~~C~K~Lag~rFTa~eDq 20 (31)
T d2cura1 1 VCVTCSKKLAGQRFTAVEDQ 20 (31)
T ss_dssp BCTTTCCBCTTSCEEECSSC
T ss_pred CcccccchhcCceeEEecce
Confidence 49999999999999988554
No 2
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.62 E-value=0.52 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.820 Sum_probs=21.6
Q ss_pred eeeeCCCCCccc-ccccchhHHHhhcCC
Q 030333 93 IFECMNCGRSIV-AGRFAPHLEKCMGKG 119 (179)
Q Consensus 93 ~~~C~nC~R~v~-a~RfA~HLekCmg~g 119 (179)
.|.|..|++.+. -+-.|-|-+.|+|+-
T Consensus 4 afvcskcgktftrrntm~rha~nc~g~d 31 (37)
T d1x6ha1 4 AFVCSKCGKTFTRRNTMARHADNCAGPD 31 (37)
T ss_dssp CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred eeeecccccchhcchHHHHHhhhcCCCC
Confidence 489999998754 345688999999974
No 3
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.99 E-value=1 Score=26.40 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=23.6
Q ss_pred CCceeeeCCCCCcccccccchhHHHhh
Q 030333 90 ANEIFECMNCGRSIVAGRFAPHLEKCM 116 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~a~RfA~HLekCm 116 (179)
....|.|..|+..|--+.---|+.+|-
T Consensus 7 ~MVfFtCn~CGEs~KK~qVekH~~~CR 33 (35)
T d1wjva1 7 GMVFFTCNACGESVKKIQVEKHVSNCR 33 (35)
T ss_dssp CCCEEEESSSCCEEETTHHHHHHHHCT
T ss_pred eEEEEEcchhHHHHhHHHHHHHHHhcc
Confidence 456899999999999988889999884
No 4
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=61.63 E-value=1.8 Score=28.30 Aligned_cols=24 Identities=29% Similarity=0.869 Sum_probs=18.1
Q ss_pred ceeeeCCCCCccc---ccccchhH-HHh
Q 030333 92 EIFECMNCGRSIV---AGRFAPHL-EKC 115 (179)
Q Consensus 92 ~~~~C~nC~R~v~---a~RfA~HL-ekC 115 (179)
..+.||.|+++|. .++|-|-= +||
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RC 32 (65)
T d1lv3a_ 5 ITVNCPTCGKTVVWGEISPFRPFCSKRC 32 (65)
T ss_dssp CEEECTTTCCEEECSSSSSCCSSSSHHH
T ss_pred ceeeCCCCCCccccCCCCCcCCchhHhh
Confidence 4689999999985 57787764 346
No 5
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.55 E-value=2.3 Score=23.95 Aligned_cols=13 Identities=31% Similarity=1.119 Sum_probs=10.9
Q ss_pred eeeeCCCCCcccc
Q 030333 93 IFECMNCGRSIVA 105 (179)
Q Consensus 93 ~~~C~nC~R~v~a 105 (179)
.|+|..|++|+-.
T Consensus 2 ~ftc~hcgkqlks 14 (30)
T d2ctda2 2 MFTCHHCGKQLRS 14 (30)
T ss_dssp CCCCSSSCCCCSS
T ss_pred ceechhHHHHHhh
Confidence 5899999998753
No 6
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.48 E-value=3.4 Score=23.47 Aligned_cols=17 Identities=41% Similarity=0.888 Sum_probs=15.2
Q ss_pred eeCCCCCcccccccchh
Q 030333 95 ECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 95 ~C~nC~R~v~a~RfA~H 111 (179)
+|.||+.-|..+-|.|.
T Consensus 1 tcs~ckq~igsgsffpk 17 (32)
T d1x63a2 1 TCSNCKQVIGTGSFFPK 17 (32)
T ss_dssp CCSSSCCCCTTSCEEEE
T ss_pred CcchhhhhcccccccCC
Confidence 59999999999999885
No 7
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.00 E-value=4.2 Score=22.64 Aligned_cols=12 Identities=42% Similarity=0.946 Sum_probs=10.0
Q ss_pred eeeeCCCCCccc
Q 030333 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|..|+|.++
T Consensus 3 Pf~C~~CgrkFA 14 (28)
T d1a1ia3 3 PFACDICGRKFA 14 (28)
T ss_dssp CEECTTTCCEES
T ss_pred Ccccchhhhhhh
Confidence 589999999754
No 8
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.12 E-value=5.3 Score=25.72 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=12.1
Q ss_pred CCceeeeCCCCCccc
Q 030333 90 ANEIFECMNCGRSIV 104 (179)
Q Consensus 90 ~~~~~~C~nC~R~v~ 104 (179)
..+.|.||+|++...
T Consensus 11 ~~~~y~Cp~C~~~ys 25 (62)
T d1vd4a_ 11 NRASFKCPVCSSTFT 25 (62)
T ss_dssp SSSEEECSSSCCEEE
T ss_pred cCCceECCCCCCCcc
Confidence 456899999999764
No 9
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.65 E-value=6.7 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=15.1
Q ss_pred eeCCCCCcccccccchhH
Q 030333 95 ECMNCGRSIVAGRFAPHL 112 (179)
Q Consensus 95 ~C~nC~R~v~a~RfA~HL 112 (179)
.|.+|+.+++.-||...=
T Consensus 1 vCt~Ck~~LaGqrFTSrd 18 (32)
T d2cuqa1 1 VCTGCQTPLAGQQFTSRD 18 (32)
T ss_dssp BCSSSCCBCTTCCEEECS
T ss_pred CccccCccccCCccccCC
Confidence 489999999999997543
No 10
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=32.56 E-value=6.8 Score=30.55 Aligned_cols=23 Identities=22% Similarity=0.741 Sum_probs=20.8
Q ss_pred ceeeeCCCCCcccccccchhHHH
Q 030333 92 EIFECMNCGRSIVAGRFAPHLEK 114 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~HLek 114 (179)
+.+.|..|++.|-.--|+.||.+
T Consensus 145 QFYKCe~CgKYvDie~~~~H~k~ 167 (218)
T d2czra1 145 QFYKCEECGKYVDIENLEAHLRE 167 (218)
T ss_dssp EEEECTTTCCEEEGGGHHHHHHT
T ss_pred EEeehhhcCceecHHHHHHHHHH
Confidence 46799999999999999999964
No 11
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]}
Probab=29.06 E-value=28 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHH----------HHHHHHHHHH-Hhhhhhhhc
Q 030333 9 MSAHSQLSSHFFEDL----------LDSIIVDVAS-ECHRVARLG 42 (179)
Q Consensus 9 ~s~l~~LA~~Iy~dL----------LddiIlDIv~-EvHR~~KlG 42 (179)
.+.|..+.+++|+.+ +.++++||+. |+||.+-++
T Consensus 34 ~GEmsa~mqYl~Q~~~~~~~~~~~~~~dll~dIatEEl~HlEmva 78 (299)
T d2cwla1 34 FGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVA 78 (299)
T ss_dssp TSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 356888899999966 7899999999 999988775
No 12
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.01 E-value=8.3 Score=22.12 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=17.0
Q ss_pred eeCCCCCcccccccchhHHH
Q 030333 95 ECMNCGRSIVAGRFAPHLEK 114 (179)
Q Consensus 95 ~C~nC~R~v~a~RfA~HLek 114 (179)
.|..|++.+..+..|-|=-|
T Consensus 1 kCekC~ktL~~G~HaEH~gk 20 (33)
T d2cu8a2 1 KCERCSKTLTPGGHAEHDGK 20 (33)
T ss_dssp BCSSSCCBCCTTSCEEETTE
T ss_pred CchhcccccCCCCccccCCC
Confidence 49999999999999988543
No 13
>d1wjva2 g.37.1.2 (A:36-66) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.32 E-value=12 Score=21.11 Aligned_cols=25 Identities=28% Similarity=0.951 Sum_probs=20.3
Q ss_pred ceeeeCCCCCcccccccchhHHHhhc
Q 030333 92 EIFECMNCGRSIVAGRFAPHLEKCMG 117 (179)
Q Consensus 92 ~~~~C~nC~R~v~a~RfA~HLekCmg 117 (179)
++|.|.-|+..+...-|-.|. +|+.
T Consensus 1 ~~~sCiDC~~~F~~~~y~~Ht-~CIt 25 (31)
T d1wjva2 1 ECLSCIDCGKDFWGDDYKSHV-KCIS 25 (31)
T ss_dssp CEEEETTTTEEEEGGGTTTCC-CCCS
T ss_pred CcEEEeecCCccCCccccccc-eeeC
Confidence 379999999999999998885 3543
No 14
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.23 E-value=11 Score=22.50 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=15.3
Q ss_pred eeCCCCCcccccccchh
Q 030333 95 ECMNCGRSIVAGRFAPH 111 (179)
Q Consensus 95 ~C~nC~R~v~a~RfA~H 111 (179)
.|..|++.+..+-||.|
T Consensus 1 rC~~C~~~Ls~~~yas~ 17 (42)
T d2d8ya2 1 RCSYCNNKLSLGTYASL 17 (42)
T ss_dssp BCTTTCCBCCTTTCCCS
T ss_pred CcCcCCCCccCCcchhh
Confidence 49999999999999976
No 15
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=23.72 E-value=13 Score=20.97 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=9.2
Q ss_pred eeeCCCCCccc
Q 030333 94 FECMNCGRSIV 104 (179)
Q Consensus 94 ~~C~nC~R~v~ 104 (179)
|.|..|+|.++
T Consensus 2 f~C~~C~R~Fa 12 (31)
T d2adra2 2 YPCGLCNRAFT 12 (31)
T ss_dssp EECTTTCCEES
T ss_pred cccccccchhh
Confidence 78999999754
No 16
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.05 E-value=12 Score=20.47 Aligned_cols=8 Identities=63% Similarity=1.717 Sum_probs=7.1
Q ss_pred eeeCCCCC
Q 030333 94 FECMNCGR 101 (179)
Q Consensus 94 ~~C~nC~R 101 (179)
|+|+.|++
T Consensus 2 f~c~kcgk 9 (28)
T d2dlqa2 2 FECPKCGK 9 (28)
T ss_dssp CBCTTTCC
T ss_pred Cccccchh
Confidence 78999986
No 17
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=21.32 E-value=14 Score=19.83 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=9.6
Q ss_pred eeeeCCCCCccc
Q 030333 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|+.|++...
T Consensus 2 p~~C~~C~k~F~ 13 (29)
T d2adra1 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CBCCTTTCCCBS
T ss_pred cCCCCCCCCCCC
Confidence 478999998754
No 18
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=21.29 E-value=48 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHH-------HHHHHHHHHH-Hhhhhhhhc
Q 030333 10 SAHSQLSSHFFEDL-------LDSIIVDVAS-ECHRVARLG 42 (179)
Q Consensus 10 s~l~~LA~~Iy~dL-------LddiIlDIv~-EvHR~~KlG 42 (179)
+.|..+.+++|+.+ +.++++||+. |+||.+-+|
T Consensus 34 GElsa~~qYl~Q~~~~~~~~~~~dll~dIatEEl~HlEmva 74 (266)
T d1jkva_ 34 GETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMIS 74 (266)
T ss_dssp SHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888889999886 5789999999 999987765
No 19
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.48 E-value=18 Score=21.09 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.9
Q ss_pred CceeeeCCCCCccccc
Q 030333 91 NEIFECMNCGRSIVAG 106 (179)
Q Consensus 91 ~~~~~C~nC~R~v~a~ 106 (179)
+..++|..|+|.+...
T Consensus 3 ~r~~~C~~C~k~F~s~ 18 (37)
T d1njqa_ 3 PRSYTCSFCKREFRSA 18 (37)
T ss_dssp SSSEECTTTCCEESSH
T ss_pred CCccCCCCCCCccCCc
Confidence 4569999999987654
No 20
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.48 E-value=17 Score=19.56 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.9
Q ss_pred eeeeCCCCCccc
Q 030333 93 IFECMNCGRSIV 104 (179)
Q Consensus 93 ~~~C~nC~R~v~ 104 (179)
.|.|+.|++.+.
T Consensus 3 Py~C~~C~k~F~ 14 (28)
T d1a1ia2 3 PFQCRICMRNFS 14 (28)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCcCEec
Confidence 489999999764
Done!