BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030335
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
          Length = 230

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 119/135 (88%), Gaps = 5/135 (3%)

Query: 36  PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
           P ++ S +  TVRA  TD EYSS+R+++N        TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42  PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100

Query: 92  PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWV 151
           PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWV
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWV 160

Query: 152 LPDSYIDVKNKDYGG 166
           LPDSYIDVKNKDYGG
Sbjct: 161 LPDSYIDVKNKDYGG 175


>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
           thaliana GN=At3g15000 PE=1 SV=1
          Length = 395

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 62  SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYA 121
           S+  P+ETI+L GCD+ HWL+V+E P+   PTR+++I++Y+ TLA ++GS +EA+  +Y+
Sbjct: 82  SNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKTLAQIVGSEDEARMKIYS 140

Query: 122 FSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGG 166
            ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG
Sbjct: 141 VSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGG 185


>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
          Length = 1036

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 MEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDY 164
           M++ KK   A +    + F  TVS E      G+ G+L +L D+ +DV  +DY
Sbjct: 437 MKQLKKKAEA-ADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDY 488


>sp|Q2IA00|SPEF2_PIG Sperm flagellar protein 2 OS=Sus scrofa GN=SPEF2 PE=2 SV=1
          Length = 1812

 Score = 30.0 bits (66), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 85   EFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEK--- 141
            E P    P  + +  +Y+N++ TVL  + E +  + A+   T TGFQ  +     ++   
Sbjct: 1015 EIPLFLVPYWKLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFV 1074

Query: 142  ------FKGLPGVLW 150
                  F  LP  LW
Sbjct: 1075 SQWQADFNSLPDDLW 1089


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,918,933
Number of Sequences: 539616
Number of extensions: 2432737
Number of successful extensions: 6183
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 13
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)