Query 030335
Match_columns 179
No_of_seqs 132 out of 574
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 99.5 1.1E-14 3.7E-19 110.2 3.3 75 78-159 38-113 (114)
2 3cnq_P Subtilisin BPN'; unclea 99.2 6.2E-11 2.1E-15 82.9 7.5 69 78-162 9-78 (80)
3 2qtw_A Proprotein convertase s 99.0 3.2E-10 1.1E-14 87.3 6.0 75 78-159 48-123 (124)
4 1v5i_B POIA1, IA-1=serine prot 98.3 3E-06 1E-10 59.3 8.1 70 78-159 3-75 (76)
5 2p4e_P Proprotein convertase s 97.4 8.6E-05 2.9E-09 71.1 4.5 76 78-160 76-152 (692)
6 3t41_A Epidermin leader peptid 96.4 0.0062 2.1E-07 53.8 7.0 75 68-162 35-111 (471)
7 3afg_A Subtilisin-like serine 95.5 0.017 6E-07 52.9 5.7 41 118-160 61-113 (539)
8 2z30_B TK-subtilisin; thermoco 94.7 0.017 5.8E-07 38.9 2.5 41 116-158 22-63 (65)
9 2z2z_A TK-subtilisin precursor 94.1 0.018 6.2E-07 50.2 1.9 42 118-161 25-67 (395)
10 3ftj_A MACB, macrolide export 30.7 28 0.00096 26.4 2.5 23 132-154 33-55 (226)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.48 E-value=1.1e-14 Score=110.20 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (179)
Q Consensus 78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~ 156 (179)
+.|||+|+.... ...++.|++||.+++++ +.+...| |+|+ +.|+||+|+|+++|+++|+++|+|++|.||+.
T Consensus 38 ~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 38 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 689999976431 24567899999998864 2234567 9999 99999999999999999999999999999998
Q ss_pred ccc
Q 030335 157 IDV 159 (179)
Q Consensus 157 ~kL 159 (179)
++.
T Consensus 111 v~~ 113 (114)
T 2w2n_P 111 VFA 113 (114)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 2
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=99.18 E-value=6.2e-11 Score=82.93 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (179)
Q Consensus 78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~ 156 (179)
..|||.+...... +..+..+....| ..| |+|+ + |+||+|+|+++++++|++.|+|..|.||..
T Consensus 9 ~~YIV~~k~~~~~--------~~~~~~~~~~~g------~~i~~~y~-~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 9 KKYIVGFKQGFKS--------CAKKEDVISEKG------GKLQKCFK-Y-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp CEEEEEECTTCCS--------HHHHHHHHHTTT------CEEEEECS-S-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred CCEEEEECCCCCh--------HHHHHHHHHHcC------CcceEEEc-c-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 6899999754321 111222222222 356 9999 8 999999999999999999999999999999
Q ss_pred cccCcc
Q 030335 157 IDVKNK 162 (179)
Q Consensus 157 ~kLHT~ 162 (179)
++++|+
T Consensus 73 v~~~tt 78 (80)
T 3cnq_P 73 YRALSA 78 (80)
T ss_dssp EEECCC
T ss_pred EEEeee
Confidence 999976
No 3
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=99.02 E-value=3.2e-10 Score=87.28 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (179)
Q Consensus 78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~ 156 (179)
..|||.|..... ...++.|.+++.+++... .....| |+|+ +.|+||+|+|+++++++|+++|+|.+|.||..
T Consensus 48 ~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~-~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 48 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 679999975421 234555666665532100 011256 9999 99999999999999999999999999999997
Q ss_pred ccc
Q 030335 157 IDV 159 (179)
Q Consensus 157 ~kL 159 (179)
++.
T Consensus 121 v~a 123 (124)
T 2qtw_A 121 VFA 123 (124)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 4
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.30 E-value=3e-06 Score=59.32 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=53.4
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCC--CCeEEEeCC
Q 030335 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGL--PGVLWVLPD 154 (179)
Q Consensus 78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~--PGVVSVfPD 154 (179)
..|||.|.... +...++.|..|+...- ..| +.|....|+||+|.|++++++.|+.. |.|..|=+|
T Consensus 3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCC-----CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 67999986431 1235566777765532 256 99933899999999999999999999 789999999
Q ss_pred CCccc
Q 030335 155 SYIDV 159 (179)
Q Consensus 155 ~~~kL 159 (179)
..+++
T Consensus 71 ~~v~~ 75 (76)
T 1v5i_B 71 HVAHA 75 (76)
T ss_dssp CEEEC
T ss_pred cEEeC
Confidence 87654
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=97.44 E-value=8.6e-05 Score=71.09 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCC
Q 030335 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (179)
Q Consensus 78 ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~ 156 (179)
..|||.|.+... .+..+.+.+++...+... .....| |.|+ +.|+||+++|+++++++|+++|+|..|.||..
T Consensus 76 g~YIV~lk~~~~-----~~~~~~~~~~l~a~~~~~-g~~~~v~~~y~-~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~ 148 (692)
T 2p4e_P 76 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 148 (692)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CcEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccccceeeEee-ccccEEEEEeCHHHHHHHHcCCCceEEEeccc
Confidence 379999975422 123444555554332100 011245 9999 99999999999999999999999999999997
Q ss_pred cccC
Q 030335 157 IDVK 160 (179)
Q Consensus 157 ~kLH 160 (179)
+..+
T Consensus 149 v~~~ 152 (692)
T 2p4e_P 149 VFAQ 152 (692)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6554
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=96.42 E-value=0.0062 Score=53.85 Aligned_cols=75 Identities=8% Similarity=0.150 Sum_probs=48.4
Q ss_pred cceeccCCCcceEEEEecCCCCCCCChhhhHHHHHHHHHHhhCChHhhhcce-eeEeecceeeeeccCCHHHHHHhhC-C
Q 030335 68 ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKG-L 145 (179)
Q Consensus 68 ~~~l~~g~d~ktYIVyM~~~~~~~~s~~~~~~~h~~~LaSVLgS~eeAk~~I-YSYs~~af~GFAArLTeeEA~~Ls~-~ 145 (179)
+-+-+.+.+.+.|||..... ....+.+. +..-.+ |.|. .++||+++++++++++|++ .
T Consensus 35 ~~l~~~~~~~~~yiv~~~~~-----------~~~~~~~~-------~~g~~v~~~~~--~~~~~~~~~~~~~~~~L~~~~ 94 (471)
T 3t41_A 35 ENLYFQGSEELYYSVEYKNT-----------ATFNKLVK-------KKSLNVVYNIP--ELHVAQIKMTKMHANALANYK 94 (471)
T ss_dssp --------CCEEEEEEESCH-----------HHHHHHHH-------HHTCEEEEEEG--GGTEEEEEECHHHHHHHHTCT
T ss_pred ccceecCCCceEEEEEcCCH-----------HHHHHHHH-------hCCCEEEEecC--CccEEEEEeCHHHHHHHHhcC
Confidence 33456677778899964321 11112221 122234 8886 5999999999999999999 9
Q ss_pred CCeEEEeCCCCcccCcc
Q 030335 146 PGVLWVLPDSYIDVKNK 162 (179)
Q Consensus 146 PGVVSVfPD~~~kLHT~ 162 (179)
|+|.+|.||..+++++.
T Consensus 95 p~V~~v~~~~~~~~~~~ 111 (471)
T 3t41_A 95 NDIKYINATCSTCITSE 111 (471)
T ss_dssp TTEEEEEECCSSCBCCC
T ss_pred CCCcEEEecceeccccc
Confidence 99999999999888653
No 7
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=95.47 E-value=0.017 Score=52.92 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=36.9
Q ss_pred ce-eeEeecceeeeeccCCHHHHHHh-----------hCCCCeEEEeCCCCcccC
Q 030335 118 NM-YAFSTTTYTGFQCTVSEETSEKF-----------KGLPGVLWVLPDSYIDVK 160 (179)
Q Consensus 118 ~I-YSYs~~af~GFAArLTeeEA~~L-----------s~~PGVVSVfPD~~~kLH 160 (179)
.+ |.|. .++||+++|+++++++| ++.|+|..|.||..+++.
T Consensus 61 ~v~~~~~--~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~ 113 (539)
T 3afg_A 61 KIKYNYH--IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVA 113 (539)
T ss_dssp EEEEECS--SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC
T ss_pred eEEEEee--eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEeccccccc
Confidence 45 8886 59999999999999999 899999999999988764
No 8
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=94.70 E-value=0.017 Score=38.94 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=36.0
Q ss_pred hcce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCCcc
Q 030335 116 KKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYID 158 (179)
Q Consensus 116 k~~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~~k 158 (179)
.-.| |.|+ .++|++|.|+++.+++|++.|||..|-+|...+
T Consensus 22 gG~i~~~~~--~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 22 GGHIVYQFK--LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp TCEEEEECS--SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCEEEEEec--CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 3456 8886 799999999999999999999999999998653
No 9
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=94.09 E-value=0.018 Score=50.19 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=37.9
Q ss_pred ce-eeEeecceeeeeccCCHHHHHHhhCCCCeEEEeCCCCcccCc
Q 030335 118 NM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKN 161 (179)
Q Consensus 118 ~I-YSYs~~af~GFAArLTeeEA~~Ls~~PGVVSVfPD~~~kLHT 161 (179)
.+ |.|. . ++||+++|+++++++|++.|+|..|.||..++++.
T Consensus 25 ~v~~~~~-~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~ 67 (395)
T 2z2z_A 25 HIVYQFK-L-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG 67 (395)
T ss_dssp EEEEECS-S-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred EEEEEec-c-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence 45 8887 4 99999999999999999999999999999988764
No 10
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=30.73 E-value=28 Score=26.43 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=20.7
Q ss_pred ccCCHHHHHHhhCCCCeEEEeCC
Q 030335 132 CTVSEETSEKFKGLPGVLWVLPD 154 (179)
Q Consensus 132 ArLTeeEA~~Ls~~PGVVSVfPD 154 (179)
..||++++++|++.|||..|-|-
T Consensus 33 ~~lt~~d~~~l~~~p~V~~v~~~ 55 (226)
T 3ftj_A 33 QNLKISDANTLSKQSYIQSVTPN 55 (226)
T ss_dssp CCCBHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCHHHHHHHhcCCCceEEEEE
Confidence 46999999999999999999884
Done!