Query 030336
Match_columns 179
No_of_seqs 156 out of 1408
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10860 tRNA-specific adenosi 100.0 9.2E-43 2E-47 269.2 17.1 147 12-176 13-159 (172)
2 COG0590 CumB Cytosine/adenosin 100.0 2.6E-42 5.7E-47 262.1 16.8 149 7-173 3-152 (152)
3 COG0117 RibD Pyrimidine deamin 100.0 3.9E-34 8.4E-39 211.6 13.5 133 9-174 3-145 (146)
4 PRK10786 ribD bifunctional dia 100.0 4.2E-33 9.2E-38 238.3 15.8 133 12-175 3-143 (367)
5 cd01285 nucleoside_deaminase N 100.0 3.9E-33 8.4E-38 201.0 13.1 104 16-128 1-105 (109)
6 PHA02588 cd deoxycytidylate de 100.0 1.4E-32 3E-37 211.8 13.9 129 11-167 2-162 (168)
7 PLN02807 diaminohydroxyphospho 100.0 1.4E-32 3.1E-37 235.4 15.4 133 10-173 30-170 (380)
8 TIGR00326 eubact_ribD riboflav 100.0 3.3E-32 7.3E-37 231.2 14.3 129 16-175 1-137 (344)
9 KOG1018 Cytosine deaminase FCY 100.0 4.8E-32 1E-36 208.1 13.6 157 4-178 3-166 (169)
10 TIGR02571 ComEB ComE operon pr 100.0 1.8E-31 3.8E-36 202.3 12.5 119 10-156 4-137 (151)
11 cd01286 deoxycytidylate_deamin 100.0 4.3E-30 9.4E-35 190.8 12.4 100 12-123 1-121 (131)
12 cd01284 Riboflavin_deaminase-r 100.0 1.5E-29 3.3E-34 183.8 11.2 93 16-125 1-102 (115)
13 PF00383 dCMP_cyt_deam_1: Cyti 100.0 3.5E-29 7.6E-34 177.6 11.6 100 10-119 2-102 (102)
14 cd00786 cytidine_deaminase-lik 100.0 1.9E-28 4E-33 172.8 10.4 92 16-119 1-95 (96)
15 COG2131 ComEB Deoxycytidylate 99.9 2.8E-22 6E-27 152.1 12.8 103 9-123 6-130 (164)
16 KOG2771 Subunit of tRNA-specif 99.8 1.6E-21 3.5E-26 161.6 7.5 143 10-164 165-338 (344)
17 cd01283 cytidine_deaminase Cyt 99.8 6.6E-19 1.4E-23 127.2 10.4 95 17-123 2-103 (112)
18 KOG3127 Deoxycytidylate deamin 99.7 3.6E-17 7.8E-22 128.5 9.5 102 6-121 61-183 (230)
19 TIGR01354 cyt_deam_tetra cytid 99.4 1.5E-12 3.3E-17 96.1 10.5 87 14-111 2-94 (127)
20 PRK06848 hypothetical protein; 99.3 1.1E-10 2.4E-15 87.4 11.9 95 8-113 3-110 (139)
21 PF14439 Bd3614-deam: Bd3614-l 99.3 3.8E-11 8.2E-16 86.0 8.5 90 31-122 7-116 (136)
22 COG0295 Cdd Cytidine deaminase 99.1 7.3E-10 1.6E-14 82.0 10.2 95 14-119 7-108 (134)
23 PRK08298 cytidine deaminase; V 99.1 1.2E-09 2.5E-14 81.5 10.5 91 11-113 3-102 (136)
24 PRK05578 cytidine deaminase; V 99.0 3.4E-09 7.3E-14 78.6 10.7 88 13-111 4-97 (131)
25 PRK12411 cytidine deaminase; P 99.0 5.2E-09 1.1E-13 77.7 11.2 88 13-111 4-97 (132)
26 PRK14719 bifunctional RNAse/5- 99.0 1.4E-09 3.1E-14 93.1 6.8 74 88-173 43-116 (360)
27 TIGR01355 cyt_deam_dimer cytid 98.9 5.7E-09 1.2E-13 86.3 9.3 88 11-111 21-112 (283)
28 PLN02402 cytidine deaminase 98.8 4.3E-08 9.2E-13 81.7 8.8 87 12-111 25-115 (303)
29 KOG0833 Cytidine deaminase [Nu 98.8 1.4E-07 3.1E-12 72.1 10.8 95 11-117 20-122 (173)
30 PRK09027 cytidine deaminase; P 98.7 1.1E-07 2.4E-12 79.2 9.7 98 11-117 188-291 (295)
31 PLN02182 cytidine deaminase 98.5 7.2E-07 1.6E-11 75.3 10.1 87 15-112 48-144 (339)
32 PRK09027 cytidine deaminase; P 98.5 1.2E-06 2.6E-11 73.1 11.2 78 21-111 59-140 (295)
33 TIGR01355 cyt_deam_dimer cytid 98.4 2.8E-06 6.1E-11 70.5 10.9 95 12-113 174-274 (283)
34 PLN02402 cytidine deaminase 98.0 2.4E-05 5.1E-10 65.4 6.9 62 11-73 191-254 (303)
35 PF14437 MafB19-deam: MafB19-l 97.3 0.0015 3.3E-08 49.1 8.1 69 41-120 37-135 (146)
36 PF08211 dCMP_cyt_deam_2: Cyti 97.0 0.0014 3E-08 48.1 5.1 60 13-73 34-95 (124)
37 PF14431 YwqJ-deaminase: YwqJ- 96.1 0.038 8.3E-07 40.5 7.4 72 33-112 15-125 (125)
38 PF14424 Toxin-deaminase: The 92.3 0.32 7E-06 36.1 4.9 48 58-111 72-119 (133)
39 PF14440 XOO_2897-deam: Xantho 91.2 0.21 4.5E-06 36.4 2.7 56 57-122 43-102 (118)
40 PF08210 APOBEC_N: APOBEC-like 90.8 0.34 7.3E-06 38.0 3.8 71 31-110 23-99 (188)
41 PF14441 OTT_1508_deam: OTT_15 76.4 6.4 0.00014 29.1 4.8 45 55-111 63-107 (142)
42 PRK13663 hypothetical protein; 75.3 8.1 0.00018 34.2 5.7 63 3-76 331-393 (493)
43 PLN02182 cytidine deaminase 72.2 13 0.00029 31.8 6.2 60 12-72 201-262 (339)
44 PF13540 RCC1_2: Regulator of 70.4 8.1 0.00018 20.7 3.1 19 33-51 9-27 (30)
45 PF02132 RecR: RecR protein; 65.7 12 0.00025 21.7 3.3 20 86-105 18-37 (41)
46 PF08903 DUF1846: Domain of un 61.4 6.2 0.00013 35.0 2.2 55 11-76 338-392 (491)
47 PF14421 LmjF365940-deam: A di 54.2 24 0.00053 27.6 4.2 43 31-73 36-88 (193)
48 PF08098 ATX_III: Anemonia sul 53.3 5 0.00011 21.0 0.2 9 96-104 2-10 (27)
49 PF05528 Coronavirus_5: Corona 49.2 9.2 0.0002 25.3 1.0 20 89-108 25-48 (82)
50 PRK09710 lar restriction allev 48.0 4 8.6E-05 26.4 -0.8 18 94-111 3-20 (64)
51 PRK09732 hypothetical protein; 47.7 1.1E+02 0.0024 22.5 8.0 51 12-71 12-63 (134)
52 PF05507 MAGP: Microfibril-ass 46.4 21 0.00046 26.3 2.6 31 88-118 88-118 (137)
53 PRK00611 putative disulfide ox 46.1 10 0.00022 28.2 1.0 11 95-105 31-41 (135)
54 PRK04307 putative disulfide ox 45.4 9.5 0.00021 30.7 0.8 12 94-105 47-58 (218)
55 PF14427 Pput2613-deam: Pput_2 44.8 22 0.00048 25.6 2.4 49 60-121 49-102 (118)
56 PRK03113 putative disulfide ox 38.0 16 0.00035 27.2 1.0 11 95-105 32-42 (139)
57 PF04805 Pox_E10: E10-like pro 34.5 31 0.00067 22.5 1.7 16 95-110 13-28 (70)
58 PF14428 SCP1201-deam: SCP1.20 34.2 41 0.00088 24.9 2.6 39 58-109 67-109 (135)
59 smart00552 ADEAMc tRNA-specifi 33.9 21 0.00045 31.1 1.1 47 60-106 71-133 (374)
60 COG4827 Predicted transporter 33.6 43 0.00094 26.9 2.8 23 87-109 101-123 (239)
61 TIGR00159 conserved hypothetic 32.9 43 0.00094 26.8 2.7 34 34-67 126-164 (211)
62 COG3193 GlcG Uncharacterized p 30.7 2.3E+02 0.005 21.2 7.6 50 13-71 14-64 (141)
63 cd06222 RnaseH RNase H (RNase 28.9 1.7E+02 0.0036 19.3 5.0 43 31-75 14-57 (130)
64 PRK01749 disulfide bond format 26.6 32 0.0007 26.5 1.0 12 94-105 35-46 (176)
65 PRK02110 disulfide bond format 26.1 32 0.00069 26.4 0.9 11 95-105 36-46 (169)
66 COG2101 SPT15 TATA-box binding 25.8 1.7E+02 0.0037 22.9 4.8 39 31-77 51-89 (185)
67 PHA03005 sulfhydryl oxidase; P 25.8 51 0.0011 23.0 1.7 16 95-110 38-53 (96)
68 KOG1682 Enoyl-CoA isomerase [L 25.5 89 0.0019 25.3 3.3 47 18-65 62-111 (287)
69 PF03928 DUF336: Domain of unk 25.5 2.6E+02 0.0056 20.0 7.5 49 13-70 9-58 (132)
70 PF02457 DisA_N: DisA bacteria 25.0 41 0.00089 24.4 1.2 18 33-50 55-72 (122)
71 PRK04388 disulfide bond format 24.9 37 0.00079 26.1 1.0 11 95-105 33-43 (172)
72 PF02600 DsbB: Disulfide bond 24.6 24 0.00052 26.3 -0.1 10 95-104 29-38 (156)
73 COG0353 RecR Recombinational D 24.1 29 0.00063 27.5 0.3 20 86-105 55-74 (198)
74 COG1624 Uncharacterized conser 22.9 78 0.0017 26.0 2.6 35 34-68 173-213 (247)
75 KOG2777 tRNA-specific adenosin 20.6 1.6E+02 0.0036 27.0 4.3 42 60-101 243-300 (542)
76 PRK13907 rnhA ribonuclease H; 20.5 3.1E+02 0.0067 19.2 6.9 56 32-100 17-73 (128)
77 COG1495 DsbB Disulfide bond fo 20.0 49 0.0011 25.4 0.8 11 95-105 37-47 (170)
No 1
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=9.2e-43 Score=269.17 Aligned_cols=147 Identities=32% Similarity=0.493 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCc
Q 030336 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (179)
|+.||++|+++|+++...++.|||||||++|+||++|+|......+++.|||++||+++.+++.. +.+.++
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~---------~~l~g~ 83 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQN---------YRLLDA 83 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCC---------CCcCCc
Confidence 67899999999999998889999999999999999999998888899999999999999887653 356899
Q ss_pred EEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHHHH
Q 030336 92 CLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFY 171 (179)
Q Consensus 92 ~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~f~ 171 (179)
|||||+|||+||++||+|+||+||||+.++++.|+.++.+.+...+.. ++.++|++|++++||.+|++.||
T Consensus 84 tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~---------~~~i~v~~gv~~~e~~~ll~~ff 154 (172)
T PRK10860 84 TLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGM---------NHRVEITEGVLADECAALLSDFF 154 (172)
T ss_pred EEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccC---------CCCCEEEeCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887765444322111 35689999999999999999999
Q ss_pred HhcCC
Q 030336 172 EQGNP 176 (179)
Q Consensus 172 ~~~~~ 176 (179)
++.++
T Consensus 155 ~~~~~ 159 (172)
T PRK10860 155 RMRRQ 159 (172)
T ss_pred HHHhh
Confidence 87553
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-42 Score=262.06 Aligned_cols=149 Identities=37% Similarity=0.599 Sum_probs=135.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhh
Q 030336 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (179)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (179)
+....|+.||++|+++|+++.+.++.|||||||+ +|+|++.|+|+..+..||+.|||+.||+++.+.+++
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~--------- 73 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGN--------- 73 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCC---------
Confidence 4557889999999999999998889999999999 999999999999999999999999999999998875
Q ss_pred hccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHH
Q 030336 86 EKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVS 165 (179)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~ 165 (179)
+.+.+||||||+|||+||++||+|+||+|||||.++++.|+.|+.+++..++.. ++.++|.+|++++||..
T Consensus 74 ~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~---------~~~~~v~~g~~~~e~~~ 144 (152)
T COG0590 74 YRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRL---------NHRVEVYGGILEEECSA 144 (152)
T ss_pred CCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCC---------CcCeEEecchhhHHHHH
Confidence 468999999999999999999999999999999999999999887777654322 27789999999999999
Q ss_pred HHHHHHHh
Q 030336 166 LFRSFYEQ 173 (179)
Q Consensus 166 l~~~f~~~ 173 (179)
+++.||..
T Consensus 145 ~l~~f~~~ 152 (152)
T COG0590 145 LLSEFFRR 152 (152)
T ss_pred HHHHHHhC
Confidence 99999963
No 3
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=3.9e-34 Score=211.64 Aligned_cols=133 Identities=29% Similarity=0.428 Sum_probs=118.0
Q ss_pred CHhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 9 SPDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~--~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
+..|+.||++|+++|++... .+|++||||||++|+||+.|++. ..+..|||+.||+++ +.
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~----~aG~pHAEv~Al~~a--------------g~ 64 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHE----KAGGPHAEVCALRMA--------------GE 64 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecC----CCCCCcHHHHHHHHc--------------Cc
Confidence 46799999999999999753 45999999999999999999998 578999999999998 34
Q ss_pred ccCCcEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCC--CCccccccccccccccccccCcccCCcCcEEecCC
Q 030336 87 KFSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEK--FGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGV 158 (179)
Q Consensus 87 ~~~~~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~--~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gv 158 (179)
...|+|+|||+||| |+|+.+|+.+||+|||++..||+ ..+. +...|+++||+|..|+
T Consensus 65 ~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~---------------G~~~L~~aGi~V~~gi 129 (146)
T COG0117 65 AARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGG---------------GLARLRAAGIEVEVGI 129 (146)
T ss_pred ccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCc---------------hHHHHHHcCCeEEEeh
Confidence 67999999999999 69999999999999999998877 3333 3577899999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q 030336 159 MASEAVSLFRSFYEQG 174 (179)
Q Consensus 159 l~~e~~~l~~~f~~~~ 174 (179)
|++|+..|++.|+.+.
T Consensus 130 l~~e~~~l~~~f~~~~ 145 (146)
T COG0117 130 LEEEAEKLNEGFLKRM 145 (146)
T ss_pred hHHHHHHHHHHHHccc
Confidence 9999999999998764
No 4
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=4.2e-33 Score=238.31 Aligned_cols=133 Identities=27% Similarity=0.409 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhh--cCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 12 TLAFMDLAIQQAKLAL--DSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~--~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
|+.||++|+++|+++. ..+++|||||||++|+||+.|+|.. .+..|||++||+++.++ ++
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~ai~~a~~~--------------~~ 64 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK--------------AK 64 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCC----CCCCCHHHHHHHHHhhh--------------cC
Confidence 6789999999999986 3468999999999999999999974 46699999999998643 47
Q ss_pred CcEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHH
Q 030336 90 KCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEA 163 (179)
Q Consensus 90 ~~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~ 163 (179)
|+|||||+||| +||+.+|+++||+||||+..+|+.+..++ +...|+++||+|..|++++||
T Consensus 65 g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~-------------~~~~l~~~gi~v~~~~~~~e~ 131 (367)
T PRK10786 65 GATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGR-------------GLYRLQQAGIDVSHGLMMSEA 131 (367)
T ss_pred CCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCch-------------HHHHHhcCCcEEEcCCcHHHH
Confidence 99999999999 89999999999999999999888655431 134577799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030336 164 VSLFRSFYEQGN 175 (179)
Q Consensus 164 ~~l~~~f~~~~~ 175 (179)
.++++.||.+.+
T Consensus 132 ~~l~~~f~~~~~ 143 (367)
T PRK10786 132 EALNKGFLKRMR 143 (367)
T ss_pred HHHHHHHHHHhh
Confidence 999999997654
No 5
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=100.00 E-value=3.9e-33 Score=200.97 Aligned_cols=104 Identities=48% Similarity=0.718 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEE
Q 030336 16 MDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (179)
Q Consensus 16 m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (179)
|++|+++|+++...++.||||+||+ +|+||+.|+|...+..+++.|||++||+++.+++.. +.+.+++||
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~---------~~~~~~~ly 71 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGS---------YLLSGCTLY 71 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCC---------CccCCeEEE
Confidence 6889999999999999999999998 599999999999888899999999999999887653 467999999
Q ss_pred ecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccc
Q 030336 95 VTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG 128 (179)
Q Consensus 95 ~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~ 128 (179)
+|+|||+||+++|+|+||+||||+.++++.|+.+
T Consensus 72 ~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~ 105 (109)
T cd01285 72 TTLEPCPMCAGALLWARIKRVVYGASDPKLGGIG 105 (109)
T ss_pred EeCCChHHHHHHHHHHCCCEEEEEecCCcccccc
Confidence 9999999999999999999999999999887765
No 6
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=100.00 E-value=1.4e-32 Score=211.82 Aligned_cols=129 Identities=26% Similarity=0.383 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccC--------------------------------CCC
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTET--------------------------------RNA 58 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~--------------------------------~~~ 58 (179)
.|+.||++|+.+|+++. .++.|||||||++|+||++|+|..+.. .++
T Consensus 2 ~d~~fM~~A~~~A~~s~-~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQESK-CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 36789999999999996 568999999999999999999987542 256
Q ss_pred ccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccc
Q 030336 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDS 138 (179)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~ 138 (179)
+.|||++||.++.++. ..+.|+|||||+|||+||+.+|+++||+||||+...+.....
T Consensus 81 ~~HAE~nAi~~a~~~~-----------~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~----------- 138 (168)
T PHA02588 81 EIHAELNAILFAARNG-----------ISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPG----------- 138 (168)
T ss_pred CccHHHHHHHHHhhcC-----------CCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHH-----------
Confidence 8899999999986541 247899999999999999999999999999999864432211
Q ss_pred cccccCcccCCcCcEEecCCcHHHHHHHH
Q 030336 139 KMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (179)
Q Consensus 139 ~~~~~~~~l~~~~i~v~~gvl~~e~~~l~ 167 (179)
+.+.|++.|++|.. +..+++.+||
T Consensus 139 ----~~~~L~~~Gi~v~~-~~~~~~~~~~ 162 (168)
T PHA02588 139 ----WDDILRKSGIEVIQ-IPKEELNKLN 162 (168)
T ss_pred ----HHHHHHHCCCEEEE-eCHHHHHhhh
Confidence 24678889999885 5566655554
No 7
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=1.4e-32 Score=235.41 Aligned_cols=133 Identities=26% Similarity=0.361 Sum_probs=115.0
Q ss_pred HhHHHHHHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhc
Q 030336 10 PDTLAFMDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~--~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (179)
..|+.||++|+++|+++... +++|||||||++|+||+.|+|.. .+..|||++||+++.+.
T Consensus 30 ~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~~-------------- 91 (380)
T PLN02807 30 DDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGDL-------------- 91 (380)
T ss_pred chHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhhh--------------
Confidence 45788999999999999754 47889999999999999999974 46789999999998542
Q ss_pred cCCcEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHH
Q 030336 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMAS 161 (179)
Q Consensus 88 ~~~~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~ 161 (179)
+.++|||||+||| +||+++|+++||+||||+..+|+.+..+. +.+.|+++|++|..|++++
T Consensus 92 ~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~-------------g~~~l~~~gi~V~~g~~~~ 158 (380)
T PLN02807 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASK-------------GIERLRDAGIEVTVGVEEE 158 (380)
T ss_pred cCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccch-------------HHHHHHhCCCEEEeCcCHH
Confidence 5799999999999 89999999999999999998887654321 2456778999999999999
Q ss_pred HHHHHHHHHHHh
Q 030336 162 EAVSLFRSFYEQ 173 (179)
Q Consensus 162 e~~~l~~~f~~~ 173 (179)
||.+|++.||.+
T Consensus 159 e~~~l~~~f~~~ 170 (380)
T PLN02807 159 LCRKLNEAFIHR 170 (380)
T ss_pred HHHHHHHHHHHH
Confidence 999999999964
No 8
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.98 E-value=3.3e-32 Score=231.15 Aligned_cols=129 Identities=29% Similarity=0.446 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEE
Q 030336 16 MDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCL 93 (179)
Q Consensus 16 m~~Ai~~A~~a~~~--~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (179)
|++|+++|+++... +++|||||||+||+||+.|+|. ..++.|||++||+++.++ ++|+||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~----~~~~~HAE~~ai~~a~~~--------------~~g~tl 62 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN--------------AKGATA 62 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCC----CCCCCCHHHHHHHHhccc--------------cCCcEE
Confidence 78999999999754 5789999999999999999998 468999999999998543 479999
Q ss_pred EecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHH
Q 030336 94 YVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (179)
Q Consensus 94 y~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~ 167 (179)
|||+||| +||+++|+++||+||||+..+|+.+..++ +...+++.|++|..|++++||.+|+
T Consensus 63 yvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~-------------~~~~l~~~gi~v~~~~~~~e~~~l~ 129 (344)
T TIGR00326 63 YVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGR-------------GAERLKQAGIEVTFGILKEEAERLN 129 (344)
T ss_pred EEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccch-------------HHHHHhcCCcEEEeCCCHHHHHHHH
Confidence 9999999 79999999999999999998887654331 2345777899999999999999999
Q ss_pred HHHHHhcC
Q 030336 168 RSFYEQGN 175 (179)
Q Consensus 168 ~~f~~~~~ 175 (179)
+.||.+.+
T Consensus 130 ~~f~~~~~ 137 (344)
T TIGR00326 130 KGFLKRMR 137 (344)
T ss_pred HHHHHhhh
Confidence 99997655
No 9
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.98 E-value=4.8e-32 Score=208.10 Aligned_cols=157 Identities=44% Similarity=0.687 Sum_probs=132.5
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHH---HHHHhhhcC
Q 030336 4 SGEEWSPDTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDV---LLDQWQKNG 78 (179)
Q Consensus 4 ~~~~~~~~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~---~~~~~~~~~ 78 (179)
...++++.|.+||+.|+++|.++.+.+ +.|||||+|+ ||+|++.|+|.+++..++|.|||+.+|++ .+++...
T Consensus 3 ~~~~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~-- 80 (169)
T KOG1018|consen 3 SIRELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRT-- 80 (169)
T ss_pred cchhcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCc--
Confidence 456788899999999999999999999 9999999999 99999999999999999999999999999 5554432
Q ss_pred CChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcC--cEEec
Q 030336 79 LSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKG--FKCTG 156 (179)
Q Consensus 79 ~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~--i~v~~ 156 (179)
..++++|||||+|||+||++||.|+||++||||..+++.++.++...... ..|+.++ +.+..
T Consensus 81 -------~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~---------~~l~~~~~~~~~~~ 144 (169)
T KOG1018|consen 81 -------IDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNK---------DFLKRLGASVISRD 144 (169)
T ss_pred -------eeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehh---------hhhccCCcceEecc
Confidence 46899999999999999999999999999999999999988775443321 1222333 44567
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC
Q 030336 157 GVMASEAVSLFRSFYEQGNPNG 178 (179)
Q Consensus 157 gvl~~e~~~l~~~f~~~~~~~~ 178 (179)
++...++..+++.|+.+.+++.
T Consensus 145 ~i~~~~~~~~~~~f~~~~n~~~ 166 (169)
T KOG1018|consen 145 GIEKKEAQKLLIAFYVRDNPKD 166 (169)
T ss_pred chhhHHhhhHHHhhccccccCC
Confidence 7888888889999998887764
No 10
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.97 E-value=1.8e-31 Score=202.29 Aligned_cols=119 Identities=24% Similarity=0.317 Sum_probs=98.3
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCC---------------CCccchHHHHHHHHHHHh
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR---------------NATRHAEMEAIDVLLDQW 74 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~---------------~~~~HAE~~Ai~~~~~~~ 74 (179)
..|+.||++|+.+|+++. .++.|||||||++|+||+.|+|...... +++.|||++||.++.+..
T Consensus 4 ~~d~~fM~~A~~~A~rs~-~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~ 82 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRST-CTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFG 82 (151)
T ss_pred cHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcC
Confidence 457899999999999985 5689999999999999999999976543 478999999999986531
Q ss_pred hhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEE
Q 030336 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKC 154 (179)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v 154 (179)
..+.+++||||+|||+||+++|+++||++|||+...+... .+.+.|++.||+|
T Consensus 83 -----------~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~----------------~~~~~l~~~gi~v 135 (151)
T TIGR02571 83 -----------VSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP----------------YAIELFEQAGVEL 135 (151)
T ss_pred -----------CCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH----------------HHHHHHHHCCCEE
Confidence 2468999999999999999999999999999986433211 0246788899988
Q ss_pred ec
Q 030336 155 TG 156 (179)
Q Consensus 155 ~~ 156 (179)
..
T Consensus 136 ~~ 137 (151)
T TIGR02571 136 KK 137 (151)
T ss_pred EE
Confidence 64
No 11
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.97 E-value=4.3e-30 Score=190.77 Aligned_cols=100 Identities=32% Similarity=0.396 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCc---------------------cCCCCccchHHHHHHHH
Q 030336 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTT---------------------ETRNATRHAEMEAIDVL 70 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~---------------------~~~~~~~HAE~~Ai~~~ 70 (179)
|+.||++|+++|+++.. ++.|||||||++|+||++|+|.+. ...+++.|||++||.++
T Consensus 1 d~~~m~~A~~~A~~s~~-~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRSTC-PRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcCC-CCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 46799999999999864 589999999999999999999875 24579999999999998
Q ss_pred HHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCC
Q 030336 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK 123 (179)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~ 123 (179)
.++ . ..+.+++||||+|||+||+.+|+++||++|||+.+.+.
T Consensus 80 ~~~-~----------~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 80 ARH-G----------VSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred hHc-C----------CCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCc
Confidence 765 1 24689999999999999999999999999999987664
No 12
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.96 E-value=1.5e-29 Score=183.77 Aligned_cols=93 Identities=35% Similarity=0.549 Sum_probs=84.5
Q ss_pred HHHHHHHHHHh--hcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcE
Q 030336 16 MDLAIQQAKLA--LDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (179)
Q Consensus 16 m~~Ai~~A~~a--~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
|++|+++|+++ ...+++|||||||+ ||+||+.|+|.. .++.|||++||+++.++ .++++|
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~----~~~~HAE~~ai~~a~~~-------------~l~g~t 63 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRK----AGGPHAEVNALASAGEK-------------LARGAT 63 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCC----CCcccHHHHHHHHHhhc-------------CCCCeE
Confidence 78999999999 77789999999997 599999999985 39999999999998654 368999
Q ss_pred EEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCC
Q 030336 93 LYVTCEPC------IMCAAALSILGIKEVYYGCANEKFG 125 (179)
Q Consensus 93 ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g 125 (179)
||||+||| +||+++|+|+||+||||+.++++.+
T Consensus 64 ly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~ 102 (115)
T cd01284 64 LYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPL 102 (115)
T ss_pred EEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcc
Confidence 99999999 8999999999999999999988754
No 13
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.96 E-value=3.5e-29 Score=177.55 Aligned_cols=100 Identities=44% Similarity=0.635 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
..|+.||++|+++|+++...++.|||||||+ +|++|+.|+|......+++.|||++||.++.++ .. ..+
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~---------~~~ 71 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GG---------SSL 71 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TS---------SGE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-cc---------ccc
Confidence 4689999999999999987789999999999 999999999998877889999999999999776 21 245
Q ss_pred CCcEEEecCCCcHHHHHHHHHhCCCEEEEee
Q 030336 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYGC 119 (179)
Q Consensus 89 ~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~ 119 (179)
.+++||+|+|||+||+++|+|+||+||||+.
T Consensus 72 ~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 72 KGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp TTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred cCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 8999999999999999999999999999984
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.96 E-value=1.9e-28 Score=172.82 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=83.6
Q ss_pred HHHHHHHHHHh-hcCCCCcEEEEEeeC--CeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcE
Q 030336 16 MDLAIQQAKLA-LDSLEVPVGCVILED--GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (179)
Q Consensus 16 m~~Ai~~A~~a-~~~~~~pvGaviv~~--g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
|+.|+++|+++ ...+++||||+||++ |+|++.|+|..+...+++.|||++||+++.++. .+++++
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~------------~~~~~t 68 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEG------------DTKGQM 68 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcC------------CCCceE
Confidence 78999999999 467899999999974 999999999999889999999999999986542 268999
Q ss_pred EEecCCCcHHHHHHHHHhCCCEEEEee
Q 030336 93 LYVTCEPCIMCAAALSILGIKEVYYGC 119 (179)
Q Consensus 93 ly~T~EPC~mC~~ai~~sgi~~vvy~~ 119 (179)
||+|+|||+||+++|+|+||++|||+.
T Consensus 69 ly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 69 LYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEECCChHHHHHHHHHhCCCCEEEee
Confidence 999999999999999999999999985
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.89 E-value=2.8e-22 Score=152.06 Aligned_cols=103 Identities=34% Similarity=0.376 Sum_probs=89.4
Q ss_pred CHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCC----------------------CccchHHHH
Q 030336 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRN----------------------ATRHAEMEA 66 (179)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~----------------------~~~HAE~~A 66 (179)
+..|+.||+.|...|.++. .++..||||||+|++||++|+|..+...+ .+.|||++|
T Consensus 6 ~~wdeyfm~~A~l~a~Rst-c~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA 84 (164)
T COG2131 6 SMWDEYFMAIAELVALRST-CPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA 84 (164)
T ss_pred cHHHHHHHHHHHHHHHHcc-CcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence 3579999999999999985 67999999999999999999998765322 236999999
Q ss_pred HHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCC
Q 030336 67 IDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK 123 (179)
Q Consensus 67 i~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~ 123 (179)
|-++++... .+.++++|+|+.||.+|+..|+++||++|||+.+.++
T Consensus 85 il~aa~~g~-----------~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~ 130 (164)
T COG2131 85 ILQAARHGV-----------GLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPT 130 (164)
T ss_pred HHHHHhcCC-----------CCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCc
Confidence 999987643 4589999999999999999999999999999987665
No 16
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.85 E-value=1.6e-21 Score=161.58 Aligned_cols=143 Identities=24% Similarity=0.369 Sum_probs=116.7
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEee--CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhc----------
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKN---------- 77 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~--~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~---------- 77 (179)
..+.++|+.+|..|..+.. ..|+|++|++ ...|++.|...+.. .+|..|+-|+++.-.+++....
T Consensus 165 ~~~~ri~e~~I~~a~~~~~--~~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~ 241 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHA--SRPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIPLL 241 (344)
T ss_pred HHHHHHHHHHHHHHhhhcc--ccCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3567788999999988765 4999999997 45577666655443 4799999999999988776544
Q ss_pred -------------------CCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccc
Q 030336 78 -------------------GLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDS 138 (179)
Q Consensus 78 -------------------~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~ 138 (179)
+-+.+..+|+|+|+++|.|+|||.||+||++|+||+||+|+.++...|+.++.+.+|..+.
T Consensus 242 ~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~ 321 (344)
T KOG2771|consen 242 IFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKS 321 (344)
T ss_pred ccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccc
Confidence 1222334599999999999999999999999999999999999999999999999988777
Q ss_pred cccccCcccCCcCcEEecCCcHHHHH
Q 030336 139 KMLNSGDVLGRKGFKCTGGVMASEAV 164 (179)
Q Consensus 139 ~~~~~~~~l~~~~i~v~~gvl~~e~~ 164 (179)
+| |.++|+.+++++++.
T Consensus 322 LN---------hry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 322 LN---------HRYEVFRGYLEEDPI 338 (344)
T ss_pred cC---------cceEEEEeecccccc
Confidence 65 678999988887765
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.79 E-value=6.6e-19 Score=127.19 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhc-CCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEE
Q 030336 17 DLAIQQAKLALD-SLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (179)
Q Consensus 17 ~~Ai~~A~~a~~-~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (179)
+.|++.+..++. .++.||||+|+. +|+|+ .|+|..+...+++.|||+.||.++..+.. ....+++|
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~-----------~~~~~~i~ 69 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL-----------RRYLVTWA 69 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC-----------CceEEEEE
Confidence 457777777743 459999999996 79998 89999888889999999999999876532 24689999
Q ss_pred ec-----CCCcHHHHHHHHHhCCCEEEEeeeCCC
Q 030336 95 VT-----CEPCIMCAAALSILGIKEVYYGCANEK 123 (179)
Q Consensus 95 ~T-----~EPC~mC~~ai~~sgi~~vvy~~~~~~ 123 (179)
+| +|||.||+++|.+.++++|+|...+++
T Consensus 70 vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 70 VSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred EECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 99 999999999999999999999987665
No 18
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.72 E-value=3.6e-17 Score=128.48 Aligned_cols=102 Identities=31% Similarity=0.435 Sum_probs=85.0
Q ss_pred CCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCC--------------------CCccchHH
Q 030336 6 EEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETR--------------------NATRHAEM 64 (179)
Q Consensus 6 ~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~--------------------~~~~HAE~ 64 (179)
......|..||+.|.-.|.++. .++..|||+||+ ++.||+.|+|..+... --+.|||.
T Consensus 61 ~~~lswd~yFM~iA~LsA~RSk-DpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~ 139 (230)
T KOG3127|consen 61 NGYLSWDDYFMAIAFLSAKRSK-DPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEE 139 (230)
T ss_pred ccCccHHHHHHHHHHHHHHhcc-CcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHH
Confidence 3445678999999999999997 459999988886 9999999999876421 12369999
Q ss_pred HHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeC
Q 030336 65 EAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCAN 121 (179)
Q Consensus 65 ~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~ 121 (179)
+||.+... ....++++|+|+-||.-|+..|+++||++|+|+...
T Consensus 140 NAi~~~~~-------------~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~ 183 (230)
T KOG3127|consen 140 NAILNKGR-------------ERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSY 183 (230)
T ss_pred HHHHHhCc-------------cccCCceEEEeecchHHHHHHHHHhhhhheeecccc
Confidence 99987643 245789999999999999999999999999999854
No 19
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.43 E-value=1.5e-12 Score=96.14 Aligned_cols=87 Identities=24% Similarity=0.343 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCc
Q 030336 14 AFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (179)
Q Consensus 14 ~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (179)
++.+.|.+.+++++..+ ++||||+|+. +|+|+. |.|..+...+++.|||+.||.++..+... .+...
T Consensus 2 ~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~----------~i~~i 70 (127)
T TIGR01354 2 KLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYR----------KFVAI 70 (127)
T ss_pred HHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCC----------CeEEE
Confidence 46788999999999764 7999999995 899996 99999988999999999999998766321 23344
Q ss_pred EEEe----cCCCcHHHHHHHHHhC
Q 030336 92 CLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 92 ~ly~----T~EPC~mC~~ai~~sg 111 (179)
.++. +..||.||.+.|.+.+
T Consensus 71 ~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 71 AVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred EEEeCCCCCcCccHHHHHHHHHhC
Confidence 4443 5789999999999986
No 20
>PRK06848 hypothetical protein; Validated
Probab=99.26 E-value=1.1e-10 Score=87.37 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 8 ~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
++.+++++++.|.+..+.++...+++|||++.. +|+|+ .|.|..+.+...+.|||+.||.++...... .
T Consensus 3 ~~~~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~-~-------- 72 (139)
T PRK06848 3 LNSEDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDH-E-------- 72 (139)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCC-c--------
Confidence 455667899999999999997778999999985 99999 899998888889999999999998654211 1
Q ss_pred ccCCcEEEe------------cCCCcHHHHHHHHHhCCC
Q 030336 87 KFSKCCLYV------------TCEPCIMCAAALSILGIK 113 (179)
Q Consensus 87 ~~~~~~ly~------------T~EPC~mC~~ai~~sgi~ 113 (179)
+....+.. ...||.+|.+.|.+.+-.
T Consensus 73 -i~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~ 110 (139)
T PRK06848 73 -IDTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKN 110 (139)
T ss_pred -eEEEEEEecCcccccccCCCccCCChhhHHHHHHhCCC
Confidence 11111111 256999999999998533
No 21
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.26 E-value=3.8e-11 Score=85.99 Aligned_cols=90 Identities=24% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhh-hc-----------CCChhhhhhccCCcEEEecC
Q 030336 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ-KN-----------GLSQSEIAEKFSKCCLYVTC 97 (179)
Q Consensus 31 ~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~-~~-----------~~~~~~~~~~~~~~~ly~T~ 97 (179)
...|.|.+|+ +|+++..+.|... .+.+.|||++.+.-.....- .. +-.+.+.+....|++||+|+
T Consensus 7 DR~VvA~lv~~~G~l~daa~NtNa--~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTl 84 (136)
T PF14439_consen 7 DRRVVAALVSPDGELVDAAVNTNA--DNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTL 84 (136)
T ss_pred ccceeEEEECCCCcEEEeeeccCC--ccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEec
Confidence 4567788886 9999999999753 78999999999987654431 00 00112233456899999999
Q ss_pred CCcHHHHHHHHHhCC-------CEEEEeeeCC
Q 030336 98 EPCIMCAAALSILGI-------KEVYYGCANE 122 (179)
Q Consensus 98 EPC~mC~~ai~~sgi-------~~vvy~~~~~ 122 (179)
.||-||+..+.++.. .+|||+.++|
T Consensus 85 qcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~ 116 (136)
T PF14439_consen 85 QCCKMCAALVCAASDRPGRRVPIDVVYLNEDP 116 (136)
T ss_pred hhHHHHHHHHHHHhhCcCCccceEEEEecCCC
Confidence 999999999999877 7899987655
No 22
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=99.12 E-value=7.3e-10 Score=82.00 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhcCC-CCcEEEEEe-eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCc
Q 030336 14 AFMDLAIQQAKLALDSL-EVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (179)
Q Consensus 14 ~~m~~Ai~~A~~a~~~~-~~pvGaviv-~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (179)
..+..|.+.+..|+... +++|||++. ++|+|+ +|.|..+.+..-+.|||..||.++... ... .+...
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~---------~~~~v 75 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKR---------KFDAV 75 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCC---------cEEEE
Confidence 56677777777787655 899999998 489988 899999999999999999999998776 221 22333
Q ss_pred EEEec----CCCcHHHHHHHHHhC-CCEEEEee
Q 030336 92 CLYVT----CEPCIMCAAALSILG-IKEVYYGC 119 (179)
Q Consensus 92 ~ly~T----~EPC~mC~~ai~~sg-i~~vvy~~ 119 (179)
.+|.. .-||.+|.+-|.+.. =...+|-.
T Consensus 76 ~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 76 VVVADTGKPVSPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred EEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEe
Confidence 33333 789999999999865 44455544
No 23
>PRK08298 cytidine deaminase; Validated
Probab=99.10 E-value=1.2e-09 Score=81.54 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.++++++.|.+..+.++..++ +|||+|+. ||+|+ +|.|..+.+...+.+||++||.++...... ...
T Consensus 3 ~~~~L~~~A~~a~~~aY~PYS-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~----------~~~ 70 (136)
T PRK08298 3 IEQALYDVAKQLIEQRYPNGW-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKR----------VTH 70 (136)
T ss_pred HHHHHHHHHHHHHHhccCCCC-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCc----------eEE
Confidence 456789999999999997778 99999985 99999 899999988889999999999988654211 111
Q ss_pred CcEEEe--------cCCCcHHHHHHHHHhCCC
Q 030336 90 KCCLYV--------TCEPCIMCAAALSILGIK 113 (179)
Q Consensus 90 ~~~ly~--------T~EPC~mC~~ai~~sgi~ 113 (179)
-..++. ...||.+|.+.|.+.+-.
T Consensus 71 ~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~ 102 (136)
T PRK08298 71 SICVARENEHSELKVLSPCGVCQERLFYWGPD 102 (136)
T ss_pred EEEEEcCCCcCCCcccCCChhHHHHHHHhCCC
Confidence 111111 146999999999998544
No 24
>PRK05578 cytidine deaminase; Validated
Probab=99.04 E-value=3.4e-09 Score=78.63 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 13 LAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+.++++|.+..++++..+ +++|||++.. +|+|+ .|.|..+...+++.|||..||.++...... .+..
T Consensus 4 ~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~----------~i~~ 72 (131)
T PRK05578 4 KELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGG----------RLVA 72 (131)
T ss_pred HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCC----------ceEE
Confidence 357888999999988654 7899999985 99999 899998888889999999999998654211 1122
Q ss_pred cEEEe----cCCCcHHHHHHHHHhC
Q 030336 91 CCLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (179)
..++. ...||.+|.+.|.+..
T Consensus 73 i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 73 IACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred EEEEecCCCccCccHHHHHHHHHhC
Confidence 22221 3679999999999875
No 25
>PRK12411 cytidine deaminase; Provisional
Probab=99.02 E-value=5.2e-09 Score=77.72 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 13 LAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+.+++.|.+.+.+++... +++|||++.. +|+|+ .|.|..+....++.|||..||.++...... .+..
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~~----------~i~~ 72 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDK----------EFVA 72 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCCC----------ceEE
Confidence 467889999999998764 7899999984 99999 899998888889999999999988654211 1111
Q ss_pred cEEEe----cCCCcHHHHHHHHHhC
Q 030336 91 CCLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (179)
..++. ...||.+|.+.|.+..
T Consensus 73 i~v~~~~~~~~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 73 IAIVADTKRPVPPCGACRQVMVELC 97 (132)
T ss_pred EEEEeCCCCCcCCchhHHHHHHHhC
Confidence 12222 2469999999999963
No 26
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.95 E-value=1.4e-09 Score=93.10 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=59.7
Q ss_pred cCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHH
Q 030336 88 FSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (179)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~ 167 (179)
..|.++|+|.|||.-|+.+|+.+||+|||+++ ||+..|.+. +-...+.|+++|++| .+++++||..++
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~----------~~~~~~~L~~aGi~V-~~~l~~e~~~l~ 110 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVY----------AKNIMEEFQSRGIKV-NNLIRKEIIKYS 110 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCcc----------chHHHHHHHHCCCEE-EeehHHHHHHHh
Confidence 47899999999999999999999999999999 665443321 111246799999999 579999999999
Q ss_pred HHHHHh
Q 030336 168 RSFYEQ 173 (179)
Q Consensus 168 ~~f~~~ 173 (179)
+.|+..
T Consensus 111 ~~~~~~ 116 (360)
T PRK14719 111 RGDLKD 116 (360)
T ss_pred HHhhhc
Confidence 887654
No 27
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.93 E-value=5.7e-09 Score=86.35 Aligned_cols=88 Identities=24% Similarity=0.220 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCC--ccCCCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRT--TETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~--~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
.++.++++|.+.+..|+... +++|||++.. +|+|+ .|.|.. +.+...+.|||..||.++.....+
T Consensus 21 ~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~---------- 89 (283)
T TIGR01355 21 DPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER---------- 89 (283)
T ss_pred hHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC----------
Confidence 34578888888888888665 8999999985 99999 899987 666778999999999988654221
Q ss_pred ccCCcEEEecCCCcHHHHHHHHHhC
Q 030336 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (179)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~sg 111 (179)
.=..+.++..||.+|.+.|.+..
T Consensus 90 --~i~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 90 --GLNDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred --ceEEEEEEeCCcchhHHHHHHhc
Confidence 22345566889999999999873
No 28
>PLN02402 cytidine deaminase
Probab=98.76 E-value=4.3e-08 Score=81.67 Aligned_cols=87 Identities=22% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCC--ccchHHHHHHHHHHHhhhcCCChhhhhhc
Q 030336 12 TLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (179)
++-.+.++......++... +++|||++.. +|+|+ .|.|..+..... +.|||..||.++...... .
T Consensus 25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~----------~ 93 (303)
T PLN02402 25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEP----------H 93 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCC----------c
Confidence 4455566666666666554 8899999985 99999 899988776555 899999999998654221 1
Q ss_pred cCCcEEEecCCCcHHHHHHHHHhC
Q 030336 88 FSKCCLYVTCEPCIMCAAALSILG 111 (179)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sg 111 (179)
+ ..+.++..||.+|.+.|.+..
T Consensus 94 i--~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 94 L--KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred e--EEEEEEeCCCcccHHHHHHhc
Confidence 2 235666789999999999873
No 29
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.75 E-value=1.4e-07 Score=72.14 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEe-eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv-~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
+.++...++.+.-..++... +++|||+++ ++|+|+ .|.|..+....++.|||..||.+++.+..+ .+
T Consensus 20 ~~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~----------k~ 88 (173)
T KOG0833|consen 20 DPQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGER----------KF 88 (173)
T ss_pred CHHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcc----------cc
Confidence 44555555555555555443 899999999 489998 899999989999999999999998766432 11
Q ss_pred CCcEEEec------CCCcHHHHHHHHHhCCCEEEE
Q 030336 89 SKCCLYVT------CEPCIMCAAALSILGIKEVYY 117 (179)
Q Consensus 89 ~~~~ly~T------~EPC~mC~~ai~~sgi~~vvy 117 (179)
. +...+. ..||.-|.+-|...+-...++
T Consensus 89 ~-~~aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~ 122 (173)
T KOG0833|consen 89 R-AIAVVAYEDGDFTTPCGVCRQFLREFGNASLLL 122 (173)
T ss_pred e-EEEEEecCCCCcCCCcHHHHHHHHHHhhcceee
Confidence 2 222232 789999999999998874333
No 30
>PRK09027 cytidine deaminase; Provisional
Probab=98.70 E-value=1.1e-07 Score=79.20 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
+++.+++.|++.+++|+..+ +++||++|.. ||+|+ .|+|..|..++++.+||..||..+.....+. ...
T Consensus 188 ~~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~--------~~i 258 (295)
T PRK09027 188 TGDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDF--------SDI 258 (295)
T ss_pred CHHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCc--------cCE
Confidence 44578899999999999776 8999999985 99999 8999999999999999999999886432110 112
Q ss_pred CCcEEEe----cCCCcHHHHHHHHHhCCCEEEE
Q 030336 89 SKCCLYV----TCEPCIMCAAALSILGIKEVYY 117 (179)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~~sgi~~vvy 117 (179)
....++. ...||.||.+.|...+-..+-|
T Consensus 259 ~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~~ 291 (295)
T PRK09027 259 QRAVLVEKADAKLSQWDATQATLKALGCHELER 291 (295)
T ss_pred EEEEEEeCCCCCcCchHHHHHHHHHhCCCCcEE
Confidence 3344443 2579999999999876444443
No 31
>PLN02182 cytidine deaminase
Probab=98.54 E-value=7.2e-07 Score=75.27 Aligned_cols=87 Identities=22% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCC--ccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 15 FMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 15 ~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+..++-..+..|+... +++|||++.. +|+|+ .|.|..+..... +.|||..||.++..+... .+..
T Consensus 48 l~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~----------~i~~ 116 (339)
T PLN02182 48 LPNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEK----------DLCE 116 (339)
T ss_pred HHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCC----------ceEE
Confidence 3334444455555443 8999999985 99999 899988776555 899999999998654221 1111
Q ss_pred cEEEec------CCCcHHHHHHHHHhCC
Q 030336 91 CCLYVT------CEPCIMCAAALSILGI 112 (179)
Q Consensus 91 ~~ly~T------~EPC~mC~~ai~~sgi 112 (179)
..+.+. ..||.+|.+.|.+..-
T Consensus 117 iaVaV~~~~~~~~sPCG~CRQfm~Ef~~ 144 (339)
T PLN02182 117 LAVAISTDGKEFGTPCGHCLQFLMEMSN 144 (339)
T ss_pred EEEEEecCCCCCcCCCchhHHHHHHhCC
Confidence 122221 6799999999999853
No 32
>PRK09027 cytidine deaminase; Provisional
Probab=98.53 E-value=1.2e-06 Score=73.08 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCcc--CCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEec
Q 030336 21 QQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT 96 (179)
Q Consensus 21 ~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~--~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T 96 (179)
..+..|+... +++|||++.. +|+|+ .|.|..+. +...+.|||..||.++...... .=..+.++
T Consensus 59 ~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge~------------~i~~I~v~ 125 (295)
T PRK09027 59 LAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEK------------AIADITVN 125 (295)
T ss_pred HHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCCC------------ceEEEEEE
Confidence 3344455443 8999999985 99999 89998764 4568899999999988654211 22345556
Q ss_pred CCCcHHHHHHHHHhC
Q 030336 97 CEPCIMCAAALSILG 111 (179)
Q Consensus 97 ~EPC~mC~~ai~~sg 111 (179)
..||.+|.+.|.+..
T Consensus 126 ~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 126 YTPCGHCRQFMNELN 140 (295)
T ss_pred ecCchhhHHHHHHhC
Confidence 789999999999864
No 33
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.43 E-value=2.8e-06 Score=70.46 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 12 TLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.+.+++.|++.+++|+..+ ++||||+|+. ||+|+ .|.|..+...+++.+||..||..+.......+.+ ...
T Consensus 174 ~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~------~i~ 246 (283)
T TIGR01355 174 ISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFE------DIV 246 (283)
T ss_pred HHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChh------hee
Confidence 3458899999999999776 8999999986 99999 8999999999999999999999986652211111 112
Q ss_pred CcEEEe----cCCCcHHHHHHHHHhCCC
Q 030336 90 KCCLYV----TCEPCIMCAAALSILGIK 113 (179)
Q Consensus 90 ~~~ly~----T~EPC~mC~~ai~~sgi~ 113 (179)
..+|.- ...||.||...|...+-.
T Consensus 247 ~aVl~e~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 247 RAVLVEKADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred EEEEEecCCCccChHHHHHHHHHHhCCC
Confidence 222222 257999999999876533
No 34
>PLN02402 cytidine deaminase
Probab=97.96 E-value=2.4e-05 Score=65.43 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHH
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 73 (179)
+...+++.|++.+++++..+ ++||||+|+. ||+|+ .|+|..+...+++.+||..||..+...
T Consensus 191 ~~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 191 SSDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred cHHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 34578999999999999776 8999999985 89998 899999999999999999999988654
No 35
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=97.34 E-value=0.0015 Score=49.06 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=52.4
Q ss_pred CCeEEEEeeCCCccC--------------------------CCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEE
Q 030336 41 DGKVIAAGRNRTTET--------------------------RNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (179)
Q Consensus 41 ~g~ii~~g~n~~~~~--------------------------~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (179)
+|+++ .|.|..... .....|||+.||.+|..+... .-...+||
T Consensus 37 ~G~~f-~gvN~~~rp~ad~n~p~~~~dri~~~~~~~~~pn~~~~~~HAE~~aiqqA~d~G~~----------~g~~~tm~ 105 (146)
T PF14437_consen 37 NGQKF-FGVNSTARPIADPNLPTLIRDRIAAKIPGKPGPNNNMAKAHAEAGAIQQAYDAGKT----------VGRSMTMY 105 (146)
T ss_pred CCeEE-EeeCCCCcccCCCCCcceeccccccccccccCccchhHHHHHHHHHHHHHHHhcCc----------cCCeEEEE
Confidence 88888 799977541 113469999999999776211 14789999
Q ss_pred ecCCCcHHHHHHHH----HhCCCEEEEeee
Q 030336 95 VTCEPCIMCAAALS----ILGIKEVYYGCA 120 (179)
Q Consensus 95 ~T~EPC~mC~~ai~----~sgi~~vvy~~~ 120 (179)
|...+|..|-+.|- .+|++++..-.+
T Consensus 106 Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 106 VDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred ECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999999987654 689998877654
No 36
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=97.03 E-value=0.0014 Score=48.06 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHH
Q 030336 13 LAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 73 (179)
+...+.|++.|++++... +.|.|++|+. +|+|+ .|++-.+..++|+..+...||..+...
T Consensus 34 d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnAAfNPSl~PlQ~AL~~~~~~ 95 (124)
T PF08211_consen 34 DPLVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENAAFNPSLPPLQAALVQAVLA 95 (124)
T ss_dssp SHHHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--TTSTT-B-HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeecccCCChHHHHHHHHHHHHc
Confidence 346889999999999766 7899999994 99999 799999999999999999999887544
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=96.06 E-value=0.038 Score=40.50 Aligned_cols=72 Identities=26% Similarity=0.386 Sum_probs=44.9
Q ss_pred cEEEEEee--CCeEEEEeeCCCccC------------------------CCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 33 PVGCVILE--DGKVIAAGRNRTTET------------------------RNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 33 pvGaviv~--~g~ii~~g~n~~~~~------------------------~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
|.-|+.++ +|+|. .|.|..... .....|||+.||++++...... ..
T Consensus 15 p~~a~~l~~~tG~~~-~g~n~~~~~~~~~lHP~v~~~ld~~~~~~~~~~~~~G~cAEv~avn~~L~~~d~~-------~~ 86 (125)
T PF14431_consen 15 PAVAAALDVRTGKIY-TGTNGKGDDSPPDLHPLVQDRLDNLPSEESRERFGAGRCAEVIAVNDALWARDAA-------RR 86 (125)
T ss_pred CceEEEEEecCCcEE-EEECCCCCCCccccCHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHhhhcc-------cc
Confidence 44444443 59988 788875431 1256799999999987763210 00
Q ss_pred ccCCcEEEe-------------cCCCcHHHHHHHHHhCC
Q 030336 87 KFSKCCLYV-------------TCEPCIMCAAALSILGI 112 (179)
Q Consensus 87 ~~~~~~ly~-------------T~EPC~mC~~ai~~sgi 112 (179)
.+.+..+++ -..||.-|...+.|.||
T Consensus 87 ~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 87 SLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred ccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 112222221 46799999999999886
No 38
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=92.30 E-value=0.32 Score=36.08 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=36.6
Q ss_pred CccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhC
Q 030336 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG 111 (179)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sg 111 (179)
....+|...|.+.++++...... .....+|||.+.||..|...|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~------~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDP------SGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhcccccc------CCceEEEEecCCcChhHHHHHHHHH
Confidence 44689999999999988653210 0146899999999999999887754
No 39
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=91.19 E-value=0.21 Score=36.38 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=40.1
Q ss_pred CCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHH---HHHHHHHh-CCCEEEEeeeCC
Q 030336 57 NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM---CAAALSIL-GIKEVYYGCANE 122 (179)
Q Consensus 57 ~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~m---C~~ai~~s-gi~~vvy~~~~~ 122 (179)
....|+|..++.++.+. +.++. .=..||+-+|||.. |+..|-.. ---+|.|..+..
T Consensus 43 ~~~~H~E~~il~~l~~~----~v~p~------~I~elYtEl~PC~~~~~C~~~l~~~~p~a~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAH----GVPPE------QITELYTELEPCELGGYCARMLRNSLPGAEVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHHc----CCcHH------HHHHHHHhcccccccchHHHHHHhhCCCCeEEEeccCC
Confidence 57889999999887542 22222 23468999999998 99999986 233488876533
No 40
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=90.79 E-value=0.34 Score=38.04 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=43.1
Q ss_pred CCcEEEEEee--CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHH----HH
Q 030336 31 EVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM----CA 104 (179)
Q Consensus 31 ~~pvGaviv~--~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~m----C~ 104 (179)
+..+-|.-|+ +|..+-.|+-... .....|||+.-|......... + +...-.-|.|+|..||+- |+
T Consensus 23 ~~t~Lcy~v~~~~~~~~~~g~~~n~--~~~~~HAE~~fl~~i~~~~~~---~----~~~~y~ITwy~SwSPC~~~~~~Ca 93 (188)
T PF08210_consen 23 NKTYLCYEVEGRDGSWVQRGYFRNE--NCKGRHAELCFLDWIRSWLLF---D----PDQIYRITWYLSWSPCPESDHCCA 93 (188)
T ss_dssp SS-EEEEEEEEECTTEEEECECCST--TSTSB-HHHHHHHHCCCGTB----T----TTSEEEEEEEESSS--CC----HH
T ss_pred CeEEEEEEEEEecCCCceEEEEECC--CCCCCCHHHHHHHHHHHhhcc---C----CCceEEEEEEEecCCCcchhhHHH
Confidence 4556677774 5545556766421 117899999988765322110 1 123456799999999999 99
Q ss_pred HHHHHh
Q 030336 105 AALSIL 110 (179)
Q Consensus 105 ~ai~~s 110 (179)
..|+..
T Consensus 94 ~~i~~F 99 (188)
T PF08210_consen 94 EKIAEF 99 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
No 41
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=76.40 E-value=6.4 Score=29.15 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhC
Q 030336 55 TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG 111 (179)
Q Consensus 55 ~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sg 111 (179)
...+..|||+..+....+.. ....-.+=+|--||.+|...+...+
T Consensus 63 ~~~~~vHaE~~ll~~~~~~~------------~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 63 SFKPSVHAEMQLLDHLERHF------------DPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCCeehHHHHHHHHHHhc------------CCCCCEEEEeCchHHhHHHHHHHhC
Confidence 35688999999998775541 0133345578999999999999988
No 42
>PRK13663 hypothetical protein; Provisional
Probab=75.33 E-value=8.1 Score=34.21 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhh
Q 030336 3 SSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (179)
Q Consensus 3 ~~~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (179)
|+.-.++..|+.-...|.+.|++. +.|.+|+-+.||+|| +|.+. ++.+|--.+|-+|.+.+..
T Consensus 331 M~~~gi~~~dR~vv~~A~~~a~~t----~~pa~AieL~DG~Ii-TGKtS------~LlgasaA~lLNAlK~LA~ 393 (493)
T PRK13663 331 MNDAGITPEDRKVVVAAREKAEET----GEPALAIELPDGTIV-TGKTS------ELLGATAAVLLNALKHLAG 393 (493)
T ss_pred HHHcCCChhhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHcC
Confidence 333445556666666666666654 467777777899999 78775 7788888888888887754
No 43
>PLN02182 cytidine deaminase
Probab=72.17 E-value=13 Score=31.82 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHH
Q 030336 12 TLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (179)
+......|++.|.+++..+ +-|-|.+|.. +|+|. .|+--.+..+||+.=+-..||.....
T Consensus 201 ~~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~YaEnAAfNPSL~PlQaALv~~~~ 262 (339)
T PLN02182 201 CSHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGWYIESVASNPSFGPVQAALVDFVA 262 (339)
T ss_pred ccHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-EeeehhhcccCCCccHHHHHHHHHHH
Confidence 3566788999999999876 6788888885 89999 68877888889998888878877544
No 44
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=70.35 E-value=8.1 Score=20.69 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.1
Q ss_pred cEEEEEeeCCeEEEEeeCC
Q 030336 33 PVGCVILEDGKVIAAGRNR 51 (179)
Q Consensus 33 pvGaviv~~g~ii~~g~n~ 51 (179)
-..++|.++|+|.+.|.|.
T Consensus 9 ~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp SEEEEEE-TTEEEEEE--T
T ss_pred CEEEEEEcCCCEEEEcCCc
Confidence 3567777899999999986
No 45
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=65.72 E-value=12 Score=21.75 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=13.4
Q ss_pred hccCCcEEEecCCCcHHHHH
Q 030336 86 EKFSKCCLYVTCEPCIMCAA 105 (179)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (179)
..+.-|--++..+||+-|+.
T Consensus 18 ~~C~~C~nlse~~~C~IC~d 37 (41)
T PF02132_consen 18 KFCSICGNLSEEDPCEICSD 37 (41)
T ss_dssp EE-SSS--EESSSS-HHHH-
T ss_pred CccCCCCCcCCCCcCcCCCC
Confidence 36899999999999999974
No 46
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=61.44 E-value=6.2 Score=34.96 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhh
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (179)
.|+.-...|.+.|++. ..|.+|+-+.||+|| +|.+. .+.+|--.+|-++.+.+..
T Consensus 338 ~dR~vv~~A~~~ae~t----~~pa~AieL~DG~Iv-TGktS------~LlgasaA~lLNAlK~Lag 392 (491)
T PF08903_consen 338 EDRPVVAAAREKAEET----GAPAAAIELPDGTIV-TGKTS------DLLGASAAALLNALKYLAG 392 (491)
T ss_dssp GGSTTHHHHHHHHHHH----SS-EEEEE-TTS-EE-EEE--------SSB-HHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHcC
Confidence 3333344455555544 688888888999999 78875 6778888888888887754
No 47
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=54.16 E-value=24 Score=27.64 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCcEEEEEe-e-C-------C-eEEEEeeCCCccCCCCccchHHHHHHHHHHH
Q 030336 31 EVPVGCVIL-E-D-------G-KVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (179)
Q Consensus 31 ~~pvGaviv-~-~-------g-~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 73 (179)
..||=+++. + + + ..+-.|.|...+...+..++|.+||-+|++.
T Consensus 36 ~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~EvSmPTGSlCSErNAiG~aLAs 88 (193)
T PF14421_consen 36 RKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEVSMPTGSLCSERNAIGKALAS 88 (193)
T ss_pred CCcEEEEEEEeccccccCCCCCccEEEEEEeEEcCCCcchhHHHHHhhhhhhc
Confidence 667666554 3 3 3 3566899998888899999999999996554
No 48
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=53.29 E-value=5 Score=20.99 Aligned_cols=9 Identities=56% Similarity=1.615 Sum_probs=1.4
Q ss_pred cCCCcHHHH
Q 030336 96 TCEPCIMCA 104 (179)
Q Consensus 96 T~EPC~mC~ 104 (179)
|.-||.||.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 456888884
No 49
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=49.24 E-value=9.2 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=14.7
Q ss_pred CCcEEEe----cCCCcHHHHHHHH
Q 030336 89 SKCCLYV----TCEPCIMCAAALS 108 (179)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~ 108 (179)
.+|.-|+ +.|||+-|+....
T Consensus 25 ldcvyflN~aGqaE~Cp~CtsLvf 48 (82)
T PF05528_consen 25 LDCVYFLNKAGQAEPCPACTSLVF 48 (82)
T ss_pred CceEEeecccCccccCcchhhhhc
Confidence 4566666 6899999997544
No 50
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=48.02 E-value=4 Score=26.41 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=13.7
Q ss_pred EecCCCcHHHHHHHHHhC
Q 030336 94 YVTCEPCIMCAAALSILG 111 (179)
Q Consensus 94 y~T~EPC~mC~~ai~~sg 111 (179)
|-+++|||-|-...+..+
T Consensus 3 ~d~lKPCPFCG~~~~~v~ 20 (64)
T PRK09710 3 YDNVKPCPFCGCPSVTVK 20 (64)
T ss_pred cccccCCCCCCCceeEEE
Confidence 678999999976655444
No 51
>PRK09732 hypothetical protein; Provisional
Probab=47.68 E-value=1.1e+02 Score=22.54 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHH
Q 030336 12 TLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLL 71 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~ 71 (179)
-++.++.|++.|++- +.|+..+||| .|.++..-+-. +...|.--.|++++.
T Consensus 12 A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~~RmD-----gA~~~s~~iA~~KA~ 63 (134)
T PRK09732 12 ASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLALSRMD-----DCAPIAAYISQEKAR 63 (134)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEEEEcC-----CCccccHHHHHHHHH
Confidence 345566666666652 6799999998 89988666553 455576677888863
No 52
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=46.36 E-value=21 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=27.5
Q ss_pred cCCcEEEecCCCcHHHHHHHHHhCCCEEEEe
Q 030336 88 FSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118 (179)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~ 118 (179)
+.=+.||.-+.||--|...+--..++|+|.-
T Consensus 88 ~pctRlySvhrP~kqCi~~lCf~slrRmYvI 118 (137)
T PF05507_consen 88 YPCTRLYSVHRPCKQCIHQLCFYSLRRMYVI 118 (137)
T ss_pred cceeeehhccccHHHHHHHHHhhceeeEEEe
Confidence 3457899999999999999999999999875
No 53
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=46.11 E-value=10 Score=28.19 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=9.2
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
..+|||++|..
T Consensus 31 ~gl~PC~LCiy 41 (135)
T PRK00611 31 LNVEPCVLCYY 41 (135)
T ss_pred cCCCCchHHHH
Confidence 47899999975
No 54
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=45.44 E-value=9.5 Score=30.70 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=9.9
Q ss_pred EecCCCcHHHHH
Q 030336 94 YVTCEPCIMCAA 105 (179)
Q Consensus 94 y~T~EPC~mC~~ 105 (179)
+.-++||+||..
T Consensus 47 vlgL~PC~LCIy 58 (218)
T PRK04307 47 YLYMAPCEQCVY 58 (218)
T ss_pred hcCCCccHHHHH
Confidence 468999999975
No 55
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=44.75 E-value=22 Score=25.59 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEE--ecCCCcHHHHHHHHHhCC---CEEEEeeeC
Q 030336 60 RHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY--VTCEPCIMCAAALSILGI---KEVYYGCAN 121 (179)
Q Consensus 60 ~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly--~T~EPC~mC~~ai~~sgi---~~vvy~~~~ 121 (179)
.|-|..++++...+ .+.|-.|. -...||+.|-+++.++-- ..|.|..++
T Consensus 49 THTE~ri~~~l~~~-------------~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 49 THTEARITRDLPLN-------------QVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhHhHHHhhcCcc-------------ccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 58898888765221 11233333 378999999999998542 347776543
No 56
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=38.04 E-value=16 Score=27.21 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=9.1
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
.-++||++|..
T Consensus 32 ~gl~PC~LCi~ 42 (139)
T PRK03113 32 MKFEPCVLCWY 42 (139)
T ss_pred cCCCCCHHHHH
Confidence 37899999975
No 57
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=34.53 E-value=31 Score=22.54 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=12.1
Q ss_pred ecCCCcHHHHHHHHHh
Q 030336 95 VTCEPCIMCAAALSIL 110 (179)
Q Consensus 95 ~T~EPC~mC~~ai~~s 110 (179)
++.=||++|......+
T Consensus 13 ~~tLPC~~Cr~HA~~a 28 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEA 28 (70)
T ss_pred HhcCCCHHHHHHHHHH
Confidence 4667999999766654
No 58
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=34.21 E-value=41 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=28.0
Q ss_pred CccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEec-CCCcHH---HHHHHHH
Q 030336 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT-CEPCIM---CAAALSI 109 (179)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T-~EPC~m---C~~ai~~ 109 (179)
...|.|..+-....+ ......+||++ ..||.- |..++-.
T Consensus 67 ~~~HVE~k~Aa~Mr~-------------~g~~~a~vvIN~n~pC~~~~gC~~~l~~ 109 (135)
T PF14428_consen 67 AASHVEGKAAAWMRR-------------NGIKHATVVINPNGPCGGRDGCDQLLPA 109 (135)
T ss_pred chhhhhHHHHHHHHH-------------cCCeEEEEEEeCCCCCCCccCHHHHHHH
Confidence 456999876544322 13578999999 999998 9876543
No 59
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=33.90 E-value=21 Score=31.09 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHhhhc-------CCC------hhhhhhcc---CCcEEEecCCCcHHHHHH
Q 030336 60 RHAEMEAIDVLLDQWQKN-------GLS------QSEIAEKF---SKCCLYVTCEPCIMCAAA 106 (179)
Q Consensus 60 ~HAE~~Ai~~~~~~~~~~-------~~~------~~~~~~~~---~~~~ly~T~EPC~mC~~a 106 (179)
.|||+.|.+-+.+-+-.. ..+ .+..+..+ -...||+|.-||.-|++-
T Consensus 71 ~HAEVlArR~f~r~l~~el~~~~~~~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~ 133 (374)
T smart00552 71 CHAEILARRGFLRFLYSELQLFNSSSEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIF 133 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCceEEECCCCCceEeCCCcEEEEEeccCCccccccc
Confidence 599999998865433111 000 00001222 347899999999866654
No 60
>COG4827 Predicted transporter [General function prediction only]
Probab=33.58 E-value=43 Score=26.91 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=18.9
Q ss_pred ccCCcEEEecCCCcHHHHHHHHH
Q 030336 87 KFSKCCLYVTCEPCIMCAAALSI 109 (179)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~ 109 (179)
+.+..+.++-.-|||-|.+++.-
T Consensus 101 D~sK~~~~ais~PCPvCl~avav 123 (239)
T COG4827 101 DVSKHTFLAISMPCPVCLGAVAV 123 (239)
T ss_pred chhhceeEEEecCCcHHHHHHHH
Confidence 46778888889999999988764
No 61
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=32.90 E-value=43 Score=26.84 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=22.7
Q ss_pred EEEEEeeCCeEEEEeeCCCc-----cCCCCccchHHHHH
Q 030336 34 VGCVILEDGKVIAAGRNRTT-----ETRNATRHAEMEAI 67 (179)
Q Consensus 34 vGaviv~~g~ii~~g~n~~~-----~~~~~~~HAE~~Ai 67 (179)
=||+|+++|+|++.|+---. ...-++.|.--..|
T Consensus 126 DGAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHRAA~Gi 164 (211)
T TIGR00159 126 DGAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHRAALGI 164 (211)
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCCCccChHHHHHHHH
Confidence 59999999999998874211 12346777644444
No 62
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=30.69 E-value=2.3e+02 Score=21.22 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHH
Q 030336 13 LAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLL 71 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~ 71 (179)
.+.++.|++.|++- ..||...||| +|.+++.-.- .+...|.--.|+.++.
T Consensus 14 ~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a~~Rm-----Dga~~~s~eiA~~KA~ 64 (141)
T COG3193 14 NKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVALERM-----DGASPLSAEIAFGKAY 64 (141)
T ss_pred HHHHHHHHHHHHHh----CCceEEEEECCCCCEEEEEec-----CCCcccchhHHHHHHH
Confidence 45566666666653 6899999998 8998865444 4677787777888763
No 63
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=28.90 E-value=1.7e+02 Score=19.29 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhh
Q 030336 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (179)
Q Consensus 31 ~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (179)
...+|+++.+ ++.......... ......++|..|+..+++...
T Consensus 14 ~~g~g~v~~~~~~~~~~~~~~~~--~~~s~~~aEl~al~~al~~~~ 57 (130)
T cd06222 14 PAGAGVVLRDPGGEVLLSGGLLG--GNTTNNRAELLALIEALELAL 57 (130)
T ss_pred ceEEEEEEEeCCCeEEEeccccC--CCCcHHHHHHHHHHHHHHHHH
Confidence 3567788887 454443322211 245668999999999877654
No 64
>PRK01749 disulfide bond formation protein B; Provisional
Probab=26.57 E-value=32 Score=26.51 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=9.5
Q ss_pred EecCCCcHHHHH
Q 030336 94 YVTCEPCIMCAA 105 (179)
Q Consensus 94 y~T~EPC~mC~~ 105 (179)
+.-.+||++|..
T Consensus 35 ~lgl~PC~LCi~ 46 (176)
T PRK01749 35 VMLLKPCVMCIY 46 (176)
T ss_pred HcCCCCcHhHHH
Confidence 347899999965
No 65
>PRK02110 disulfide bond formation protein B; Provisional
Probab=26.13 E-value=32 Score=26.36 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.9
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
.-.+||++|..
T Consensus 36 ~g~~PC~LCi~ 46 (169)
T PRK02110 36 KGEDPCPLCII 46 (169)
T ss_pred cCCCCCHHHHH
Confidence 47899999964
No 66
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.83 E-value=1.7e+02 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhc
Q 030336 31 EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKN 77 (179)
Q Consensus 31 ~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~ 77 (179)
++...+.|++.|+++++|.-.. +.-..|+.+..+.+...
T Consensus 51 ePk~a~LIF~SGK~VcTGaKs~--------ed~~~av~~~~~~L~~~ 89 (185)
T COG2101 51 EPKTAALIFRSGKVVCTGAKSV--------EDVHRAVKKLAKKLKDG 89 (185)
T ss_pred CCcceEEEEecCcEEEeccCcH--------HHHHHHHHHHHHHHHhc
Confidence 4556777778999999998764 23345777777766653
No 67
>PHA03005 sulfhydryl oxidase; Provisional
Probab=25.78 E-value=51 Score=22.96 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.0
Q ss_pred ecCCCcHHHHHHHHHh
Q 030336 95 VTCEPCIMCAAALSIL 110 (179)
Q Consensus 95 ~T~EPC~mC~~ai~~s 110 (179)
...=||++|......+
T Consensus 38 ~~tLPC~~Cr~HA~~a 53 (96)
T PHA03005 38 CSTLPCPACRRHAKEA 53 (96)
T ss_pred hhcCCCHHHHHHHHHH
Confidence 4667999999866554
No 68
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=25.50 E-value=89 Score=25.27 Aligned_cols=47 Identities=34% Similarity=0.444 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccC--CCCccchHHH
Q 030336 18 LAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTET--RNATRHAEME 65 (179)
Q Consensus 18 ~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~--~~~~~HAE~~ 65 (179)
.+++-+.... ..+.-+-|||.. +|+|.+.|+|-..-+ .....|||+-
T Consensus 62 ~~Lq~~ll~d-~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevF 111 (287)
T KOG1682|consen 62 CALQDALLKD-KDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVF 111 (287)
T ss_pred HHHHHHHhhc-ccccceeEEEEecCCccccccccHHHhhcCccchHHHHHH
Confidence 3444444433 346778888886 999999999942222 2346799863
No 69
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=25.48 E-value=2.6e+02 Score=20.04 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHH
Q 030336 13 LAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVL 70 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~ 70 (179)
.+.+..|++.|++. +.++..+||+ +|.++..-.-. ....|..-.|.+++
T Consensus 9 ~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~~~r~d-----ga~~~~~~~a~~KA 58 (132)
T PF03928_consen 9 WKLGDAAVEEARER----GLPVSIAVVDAGGHLLAFARMD-----GAPPDSIDWAQRKA 58 (132)
T ss_dssp HHHHHHHHHHHHHT----T---EEEEEETTS-EEEEEE-T-----TS-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEEECCCCEEEEEecC-----CCcccHHHHHHHHH
Confidence 45566677777653 5668877787 89988765542 35566666777775
No 70
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=25.01 E-value=41 Score=24.40 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=15.5
Q ss_pred cEEEEEeeCCeEEEEeeC
Q 030336 33 PVGCVILEDGKVIAAGRN 50 (179)
Q Consensus 33 pvGaviv~~g~ii~~g~n 50 (179)
-=||+|+++|+|++.|.+
T Consensus 55 hDGAviI~~~~i~aag~~ 72 (122)
T PF02457_consen 55 HDGAVIIDGGRIVAAGAI 72 (122)
T ss_dssp SSSEEEEETTCCEEEEEE
T ss_pred CCceEEEECCeEEEEEEE
Confidence 359999999999998886
No 71
>PRK04388 disulfide bond formation protein B; Provisional
Probab=24.86 E-value=37 Score=26.05 Aligned_cols=11 Identities=36% Similarity=0.923 Sum_probs=9.1
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
.-.+||++|..
T Consensus 33 ~gl~PC~LCi~ 43 (172)
T PRK04388 33 LGLEPCPLCIF 43 (172)
T ss_pred cCCCCcHHHHH
Confidence 47899999965
No 72
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=24.65 E-value=24 Score=26.31 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=5.7
Q ss_pred ecCCCcHHHH
Q 030336 95 VTCEPCIMCA 104 (179)
Q Consensus 95 ~T~EPC~mC~ 104 (179)
.-.+||++|.
T Consensus 29 lg~~PC~LC~ 38 (156)
T PF02600_consen 29 LGLQPCPLCL 38 (156)
T ss_dssp TTT---SHHC
T ss_pred cCCCCcHHHH
Confidence 5689999997
No 73
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=24.12 E-value=29 Score=27.51 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=17.3
Q ss_pred hccCCcEEEecCCCcHHHHH
Q 030336 86 EKFSKCCLYVTCEPCIMCAA 105 (179)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (179)
..|+.|--+++-+||.-|+.
T Consensus 55 ~~C~~C~~~te~d~C~ICsd 74 (198)
T COG0353 55 KHCSVCGNLTESDPCDICSD 74 (198)
T ss_pred ccccccCCcCCCCcCcCcCC
Confidence 36899999999999998883
No 74
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=78 Score=25.98 Aligned_cols=35 Identities=37% Similarity=0.498 Sum_probs=22.4
Q ss_pred EEEEEeeCCeEEEEeeCCC------ccCCCCccchHHHHHH
Q 030336 34 VGCVILEDGKVIAAGRNRT------TETRNATRHAEMEAID 68 (179)
Q Consensus 34 vGaviv~~g~ii~~g~n~~------~~~~~~~~HAE~~Ai~ 68 (179)
=||+|+++++|++.|.=-- -...-++.|---.+|.
T Consensus 173 DGAvII~~~kIvaAg~yLpls~~~~i~k~lGtRHrAAlgiS 213 (247)
T COG1624 173 DGAVIIRDNKIVAAGRYLPLSEKSLISKGLGTRHRAALGIS 213 (247)
T ss_pred cceEEEeCCEEEEEEEEeccCCCCCcCccccHHHHHhhccc
Confidence 5999999889998876311 1223467775444443
No 75
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=20.57 E-value=1.6e+02 Score=26.99 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHhhh-------cC----CC-hhhhh-hcc---CCcEEEecCCCcH
Q 030336 60 RHAEMEAIDVLLDQWQK-------NG----LS-QSEIA-EKF---SKCCLYVTCEPCI 101 (179)
Q Consensus 60 ~HAE~~Ai~~~~~~~~~-------~~----~~-~~~~~-~~~---~~~~ly~T~EPC~ 101 (179)
.|||+.|-|-+.+-+-+ .. .. ..+.+ +.+ -...||+|.-||.
T Consensus 243 cHAEIlARR~llRfLy~eL~l~~~~~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCG 300 (542)
T KOG2777|consen 243 CHAEILARRGLLRFLYSELQLYNSEKKDSIFEKSKEGGKFTLKENVLFHLYISTSPCG 300 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCceeeecCCCCceecCCCcEEEEEecCCCCC
Confidence 59999999887654321 11 00 01111 212 2468999999995
No 76
>PRK13907 rnhA ribonuclease H; Provisional
Probab=20.51 E-value=3.1e+02 Score=19.16 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred CcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCc
Q 030336 32 VPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPC 100 (179)
Q Consensus 32 ~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC 100 (179)
...|.||.+ +|.+...+.-. ...-.+||..|+..+++.....+ .....+|+..+-+
T Consensus 17 ~G~G~vi~~~~~~~~~~~~~~----~~tn~~AE~~All~aL~~a~~~g---------~~~v~i~sDS~~v 73 (128)
T PRK13907 17 SGAGVFIKGVQPAVQLSLPLG----TMSNHEAEYHALLAALKYCTEHN---------YNIVSFRTDSQLV 73 (128)
T ss_pred cEEEEEEEECCeeEEEEeccc----ccCCcHHHHHHHHHHHHHHHhCC---------CCEEEEEechHHH
Confidence 346777765 45555333221 12336899999998877655432 2346666654443
No 77
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=20.03 E-value=49 Score=25.42 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=8.5
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
.-.+||+.|.-
T Consensus 37 ~g~~PC~LC~~ 47 (170)
T COG1495 37 LGLEPCPLCLY 47 (170)
T ss_pred cCCCCcHHHHH
Confidence 46799998864
Done!