Query 030336
Match_columns 179
No_of_seqs 156 out of 1408
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh1_A TRNA-specific adenosine 100.0 5.4E-45 1.8E-49 284.6 16.8 156 10-177 24-181 (189)
2 2nx8_A TRNA-specific adenosine 100.0 1.5E-43 5.1E-48 274.4 16.6 147 10-174 14-160 (179)
3 1z3a_A TRNA-specific adenosine 100.0 3E-43 1E-47 270.3 17.2 148 10-175 7-154 (168)
4 2b3j_A TRNA adenosine deaminas 100.0 6.2E-43 2.1E-47 266.5 16.3 147 10-174 5-151 (159)
5 2a8n_A Cytidine and deoxycytid 100.0 2.7E-42 9.3E-47 259.1 14.3 142 11-170 3-144 (144)
6 1wwr_A TRNA adenosine deaminas 100.0 7.5E-42 2.6E-46 263.1 14.8 147 11-176 22-168 (171)
7 2g84_A Cytidine and deoxycytid 100.0 1.2E-41 4E-46 267.5 14.7 159 7-174 23-183 (197)
8 1wkq_A Guanine deaminase; doma 100.0 3.1E-42 1E-46 263.6 9.3 147 11-176 10-161 (164)
9 1p6o_A Cytosine deaminase; hyd 100.0 5.8E-40 2E-44 250.5 10.4 143 5-174 7-151 (161)
10 2b3z_A Riboflavin biosynthesis 100.0 2.2E-34 7.5E-39 245.7 12.3 133 10-173 12-152 (373)
11 2hxv_A Diaminohydroxyphosphori 100.0 8.6E-34 2.9E-38 241.0 13.1 132 13-173 15-154 (360)
12 2g6v_A Riboflavin biosynthesis 100.0 2.4E-34 8.1E-39 247.5 9.4 134 9-173 27-168 (402)
13 2hvw_A Deoxycytidylate deamina 100.0 1.2E-33 3.9E-38 219.6 8.6 124 10-161 40-178 (184)
14 1vq2_A DCMP deaminase, deoxycy 100.0 1.3E-33 4.5E-38 221.1 9.0 127 12-166 3-182 (193)
15 2w4l_A DCMP deaminse, deoxycyt 100.0 6.5E-34 2.2E-38 220.1 2.1 141 4-173 5-166 (178)
16 3g8q_A Predicted RNA-binding p 99.9 2.8E-26 9.7E-31 181.2 7.2 80 20-122 10-89 (278)
17 2nyt_A Probable C->U-editing e 99.8 1.8E-20 6E-25 145.9 11.1 118 31-172 32-159 (190)
18 1uwz_A Cytidine deaminase; CDD 99.8 4.4E-18 1.5E-22 126.0 10.6 89 12-111 3-97 (136)
19 2z3g_A Blasticidin-S deaminase 99.7 1.4E-16 4.8E-21 117.0 12.3 94 7-113 2-101 (130)
20 2fr5_A Cytidine deaminase; tet 99.7 8.5E-17 2.9E-21 120.3 10.9 91 10-111 13-110 (146)
21 3b8f_A Putative blasticidin S 99.5 7.7E-14 2.6E-18 103.8 10.1 96 11-118 3-107 (142)
22 3r2n_A Cytidine deaminase; str 99.5 1.7E-13 5.7E-18 101.4 9.0 100 6-118 4-111 (138)
23 1r5t_A Cytidine deaminase; zin 99.5 4.1E-13 1.4E-17 99.9 10.3 92 10-111 9-107 (142)
24 2d30_A Cytidine deaminase; pur 99.4 9.2E-13 3.2E-17 97.8 10.3 90 11-111 11-106 (141)
25 3mpz_A Cytidine deaminase; ssg 99.2 1.7E-11 5.9E-16 91.5 7.9 90 11-111 24-119 (150)
26 1ctt_A Cytidine deaminase; hyd 99.2 6.6E-11 2.3E-15 97.5 10.9 93 11-112 187-285 (294)
27 1ctt_A Cytidine deaminase; hyd 99.1 5.4E-10 1.8E-14 92.0 10.5 87 12-111 49-140 (294)
28 3dmo_A Cytidine deaminase; str 99.1 7.8E-10 2.7E-14 81.5 10.0 92 11-111 10-107 (138)
29 3oj6_A Blasticidin-S deaminase 99.0 2.8E-09 9.7E-14 80.2 11.7 93 6-112 25-124 (158)
30 4eg2_A Cytidine deaminase; UMP 98.6 1.3E-07 4.6E-12 77.7 8.6 84 16-112 57-144 (298)
31 4eg2_A Cytidine deaminase; UMP 98.5 7.2E-07 2.4E-11 73.4 9.7 90 13-111 193-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 95.5 0.013 4.4E-07 45.4 4.1 45 58-110 77-121 (203)
33 3vow_A Probable DNA DC->DU-edi 94.9 0.017 5.7E-07 44.4 3.2 57 56-120 61-122 (190)
34 3bh1_A UPF0371 protein DIP2346 62.8 4.5 0.00015 34.7 2.8 56 10-76 343-398 (507)
35 3vdp_A Recombination protein R 39.3 17 0.0006 28.0 2.5 20 86-105 69-88 (212)
36 1vdd_A Recombination protein R 36.0 21 0.00073 27.8 2.6 20 86-105 55-74 (228)
37 2ehg_A Ribonuclease HI; RNAse 35.3 1.1E+02 0.0037 21.1 6.4 56 35-99 22-79 (149)
38 2fb5_A Hypothetical membrane s 31.7 25 0.00085 26.9 2.2 31 34-64 135-171 (205)
39 3p1g_A Xenotropic murine leuke 29.7 1.1E+02 0.0038 22.0 5.6 55 34-103 41-95 (165)
40 3zzm_A Bifunctional purine bio 28.4 2.8E+02 0.0096 24.2 8.5 77 20-116 414-491 (523)
41 2zuq_A Disulfide bond formatio 24.9 16 0.00055 27.0 0.1 11 95-105 36-46 (176)
42 3ghd_A A cystathionine beta-sy 22.1 1.1E+02 0.0036 18.5 3.6 15 32-46 21-36 (70)
43 3u3g_D Ribonuclease H, RNAse H 21.5 1.2E+02 0.0041 20.1 4.2 41 33-75 20-61 (140)
44 1nm3_A Protein HI0572; hybrid, 21.0 2.5E+02 0.0087 20.6 8.6 66 33-113 126-196 (241)
No 1
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-45 Score=284.55 Aligned_cols=156 Identities=49% Similarity=0.860 Sum_probs=132.1
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.+|+.||++|+++|+++...+++|||||||+||+||+.|+|.+.+..+++.|||++||+++.+.....+++. .+.+.
T Consensus 24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~~l~ 100 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SEVFE 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---ccccC
Confidence 468999999999999999888999999999999999999998777789999999999999987654333221 13579
Q ss_pred CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCC--cCcEEecCCcHHHHHHHH
Q 030336 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGR--KGFKCTGGVMASEAVSLF 167 (179)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~--~~i~v~~gvl~~e~~~l~ 167 (179)
++|||||+|||+||++||+|+||+||||+..+|+.|+.|+.+.+.. ..+.. +.++|++|+|++||.+|+
T Consensus 101 g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~---------~~l~~~gh~ieV~~Gvl~~e~~~Ll 171 (189)
T 3dh1_A 101 HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIAS---------ADLPNTGRPFQCIPGYRAEEAVEML 171 (189)
T ss_dssp TEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTT---------CCCTTSSCCCEEECCTTHHHHHHHH
T ss_pred CeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchh---------hHHHHcCCCeEEEeCccHHHHHHHH
Confidence 9999999999999999999999999999999999999887777653 22333 449999999999999999
Q ss_pred HHHHHhcCCC
Q 030336 168 RSFYEQGNPN 177 (179)
Q Consensus 168 ~~f~~~~~~~ 177 (179)
+.||++.+++
T Consensus 172 ~~Ff~~~~~~ 181 (189)
T 3dh1_A 172 KTFYKQENPN 181 (189)
T ss_dssp HHHTCC----
T ss_pred HHHHHHhcCC
Confidence 9999987764
No 2
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=1.5e-43 Score=274.45 Aligned_cols=147 Identities=32% Similarity=0.643 Sum_probs=131.5
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
+.|+.||++|+++|+++...+++|||||||+||+||+.|+|..+...+++.|||++||+++.+++.. +.+.
T Consensus 14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~---------~~l~ 84 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGN---------WRLL 84 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SCCT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCC---------Cccc
Confidence 5789999999999999998889999999999999999999998878899999999999999887653 4579
Q ss_pred CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHH
Q 030336 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRS 169 (179)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~ 169 (179)
++|||||+|||+||+++|+|+||+||||+..+|+.++.|+.+.++..+.. +++++|.+|+|++||.+|++.
T Consensus 85 g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~---------~~~~~V~~gvl~~e~~~l~~~ 155 (179)
T 2nx8_A 85 DTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERL---------NHRVQVERGLLAADCANIMQT 155 (179)
T ss_dssp TEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTT---------TCCCEEEECTTHHHHHHHHHH
T ss_pred ceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhcccc---------CCCcEEEcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988866665443221 478999999999999999999
Q ss_pred HHHhc
Q 030336 170 FYEQG 174 (179)
Q Consensus 170 f~~~~ 174 (179)
||++.
T Consensus 156 f~~~~ 160 (179)
T 2nx8_A 156 FFRQG 160 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
No 3
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=3e-43 Score=270.33 Aligned_cols=148 Identities=32% Similarity=0.479 Sum_probs=131.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
..|+.||++|+++|++++..+++|||||||+||+||+.|+|..+...+++.|||++||+++.+++.. +.+.
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~---------~~l~ 77 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQN---------YRLI 77 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SCCT
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCC---------Cccc
Confidence 4588999999999999998789999999999999999999998888899999999999999887653 4578
Q ss_pred CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHH
Q 030336 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRS 169 (179)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~ 169 (179)
+++||||+|||+||+++|+|+||+||||+..+|+.++.|+.+.++..+. -+++++|.+|+|++||.+|++.
T Consensus 78 ~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~---------~~~~~~v~~gvl~~e~~~l~~~ 148 (168)
T 1z3a_A 78 DATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG---------MNHRVEITEGILADECAALLSD 148 (168)
T ss_dssp TCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTT---------CSSCCEEECCTTHHHHHHHHHH
T ss_pred ccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccc---------cCCCcEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887666544322 1368999999999999999999
Q ss_pred HHHhcC
Q 030336 170 FYEQGN 175 (179)
Q Consensus 170 f~~~~~ 175 (179)
||++.+
T Consensus 149 f~~~~r 154 (168)
T 1z3a_A 149 FFRMRR 154 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997543
No 4
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=6.2e-43 Score=266.52 Aligned_cols=147 Identities=33% Similarity=0.515 Sum_probs=130.8
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
..|+.||++|+++|++++..+++|||||||+||+||++|+|..+.+.+++.|||++||+++.+++.. +.+.
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~---------~~l~ 75 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGS---------WRLE 75 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SCCT
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCC---------CCcc
Confidence 3688999999999999998889999999999999999999998877899999999999999887653 3578
Q ss_pred CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHH
Q 030336 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRS 169 (179)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~ 169 (179)
+++||||+|||+||+++|+|+||+||||+.++|+.++.|+.+.++..+.. +++++|.+|+|++||.+||+.
T Consensus 76 ~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~---------~~~~~v~~gvl~~e~~~l~~~ 146 (159)
T 2b3j_A 76 GCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNF---------NHRAIVDKGVLKEACSTLLTT 146 (159)
T ss_dssp TEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTS---------SCCCEEECCTTHHHHHHHHHH
T ss_pred eeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhcccc---------CCCCEEEcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988865665443221 378999999999999999999
Q ss_pred HHHhc
Q 030336 170 FYEQG 174 (179)
Q Consensus 170 f~~~~ 174 (179)
||++.
T Consensus 147 f~~~~ 151 (159)
T 2b3j_A 147 FFKNL 151 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=2.7e-42 Score=259.06 Aligned_cols=142 Identities=36% Similarity=0.580 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
.|+.||++|+++|++++..+++|||||||+||+||++|+|..+...+++.|||++||+++.+++.. +.+.+
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~---------~~~~~ 73 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQ---------ERLPG 73 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC---------SCCTT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCC---------CccCC
Confidence 578999999999999998889999999999999999999998888899999999999999887653 35799
Q ss_pred cEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHHH
Q 030336 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (179)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~f 170 (179)
++||+|+|||+||+++|+|+||+||||+.++++.++.|+.+.++..+. -+++++|.+|+|++||.+||+.|
T Consensus 74 ~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPT---------CHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTT---------CCCCCEEEEC-------------
T ss_pred eEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccc---------cCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999998886555544322 13889999999999999999987
No 6
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=7.5e-42 Score=263.06 Aligned_cols=147 Identities=31% Similarity=0.510 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+|+.||++|+++|++++..+++|||||||+||+||++|+|..+...+++.|||++||+++.+++.. +.+.+
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~---------~~l~~ 92 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNT---------KYLEG 92 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC---------SCCTT
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCC---------CccCc
Confidence 368999999999999998889999999999999999999998888899999999999999887653 35799
Q ss_pred cEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHHH
Q 030336 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (179)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~f 170 (179)
++||+|+|||+||+++|+|+||+||||+.++|+.++.|+.+.+...+. .+++++|.+ +|++||.+||+.|
T Consensus 93 ~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~---------~~~~i~V~~-vl~~e~~~ll~~f 162 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPT---------LNHRVKWEY-YPLEEASELLSEF 162 (171)
T ss_dssp EEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTT---------CSSCCEEEE-CCCHHHHHHHHHH
T ss_pred eEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccc---------cCCCcEEEE-ecHHHHHHHHHHH
Confidence 999999999999999999999999999999999998886555543322 247899998 9999999999999
Q ss_pred HHhcCC
Q 030336 171 YEQGNP 176 (179)
Q Consensus 171 ~~~~~~ 176 (179)
|++.+.
T Consensus 163 ~~~~r~ 168 (171)
T 1wwr_A 163 FKKLRN 168 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=1.2e-41 Score=267.55 Aligned_cols=159 Identities=23% Similarity=0.382 Sum_probs=132.2
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-C-CeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhh
Q 030336 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-D-GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEI 84 (179)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~-~-g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~ 84 (179)
...+.|+.||++|+++|+++...++.|||||||+ + |+||++|+|.+....+++.|||++||+++.+++..+.++.
T Consensus 23 ~~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~--- 99 (197)
T 2g84_A 23 RVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSA--- 99 (197)
T ss_dssp CBCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTC---
T ss_pred cCCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccc---
Confidence 3456789999999999999996668999999997 8 9999999999888899999999999999988766543321
Q ss_pred hhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHH
Q 030336 85 AEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAV 164 (179)
Q Consensus 85 ~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~ 164 (179)
..++++|||||+|||+||++||+|+||+||||+..+++.++.| +.....+ ..+...|++++++|++|+|++||.
T Consensus 100 -~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G--~~~~~~~---~~~~~~l~~~~i~V~~gvl~~e~~ 173 (197)
T 2g84_A 100 -DGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIG--FDEGPRP---ENWMGGLEARGITVTTGLLRDAAC 173 (197)
T ss_dssp -TTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTT--CCCCCCC---TTHHHHHHHTTCEEECCTTHHHHH
T ss_pred -cCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccC--cccccch---hHHHHHHhcCCCEEEecCCHHHHH
Confidence 1357899999999999999999999999999999999877665 2222111 012345778999999999999999
Q ss_pred HHHHHHHHhc
Q 030336 165 SLFRSFYEQG 174 (179)
Q Consensus 165 ~l~~~f~~~~ 174 (179)
+|++.||++.
T Consensus 174 ~ll~~f~~~~ 183 (197)
T 2g84_A 174 ALLREYNACN 183 (197)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 9999999864
No 8
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=100.00 E-value=3.1e-42 Score=263.60 Aligned_cols=147 Identities=27% Similarity=0.423 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.|+.||++|+++|+++...+ ++|||||||+||+||++|+|.+....+++.|||++||+++.++++. +.+.
T Consensus 10 ~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~---------~~l~ 80 (164)
T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGA---------YQLD 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SSCT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCC---------CCcC
Confidence 57899999999999999888 9999999999999999999998877899999999999999887653 4679
Q ss_pred CcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccc----cccccccccccccccCcccCCcCcEEecCCcHHHHHH
Q 030336 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG----SILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVS 165 (179)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~----~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~ 165 (179)
++|||||+|||+||+++|+|+||+||||+.++++.++.| +.+.+.. ..+.+++++| .|++++||.+
T Consensus 81 g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~---------~~~~~~~~~v-~gv~~~e~~~ 150 (164)
T 1wkq_A 81 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEID---------KPAEERTIPF-YQVTLTEHLS 150 (164)
T ss_dssp TEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHT---------SCGGGSSSCE-EECCCTTTTH
T ss_pred ceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhc---------chhhcCCeEE-EecCHHHHHH
Confidence 999999999999999999999999999999999888776 3333322 1233467777 5699999999
Q ss_pred HHHHHHHhcCC
Q 030336 166 LFRSFYEQGNP 176 (179)
Q Consensus 166 l~~~f~~~~~~ 176 (179)
||+.||++.+.
T Consensus 151 ll~~f~~~~~~ 161 (164)
T 1wkq_A 151 PFQAWRNFANK 161 (164)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhccCC
Confidence 99999987764
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=100.00 E-value=5.8e-40 Score=250.52 Aligned_cols=143 Identities=24% Similarity=0.354 Sum_probs=123.3
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe--eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChh
Q 030336 5 GEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQS 82 (179)
Q Consensus 5 ~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv--~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~ 82 (179)
+.+.+..|+.||++|+++|++++..+++||||||| ++|+||++|+|.++...+++.|||++||+++.+..
T Consensus 7 ~~m~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~-------- 78 (161)
T 1p6o_A 7 GGMASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-------- 78 (161)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC--------
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhC--------
Confidence 34556778999999999999999888999999999 69999999999988778999999999999986431
Q ss_pred hhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHH
Q 030336 83 EIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASE 162 (179)
Q Consensus 83 ~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e 162 (179)
...+.++|||||+|||+||+++|+|+||+||||+..++..|. +.+.|++++++|.. ++++|
T Consensus 79 --~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g~----------------~~~~l~~~gi~v~~-~~~~e 139 (161)
T 1p6o_A 79 --GKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSK----------------GEKYLQTRGHEVVV-VDDER 139 (161)
T ss_dssp --HHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCCT----------------HHHHHHHTTCEEEE-CCCHH
T ss_pred --CccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCcc----------------HHHHHHhcCCEEEE-ecHHH
Confidence 134689999999999999999999999999999998876541 12446678999987 99999
Q ss_pred HHHHHHHHHHhc
Q 030336 163 AVSLFRSFYEQG 174 (179)
Q Consensus 163 ~~~l~~~f~~~~ 174 (179)
|.+|++.||++.
T Consensus 140 ~~~l~~~f~~~~ 151 (161)
T 1p6o_A 140 CKKIMKQFIDER 151 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 10
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=2.2e-34 Score=245.66 Aligned_cols=133 Identities=26% Similarity=0.389 Sum_probs=116.7
Q ss_pred HhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhc
Q 030336 10 PDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~--~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (179)
..|+.||++|+++|+++.. .+++|||||||+||+||++|+|. ..++.|||++||+++.. .
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~--------------~ 73 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHL----KYGEAHAEVHAIHMAGA--------------H 73 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECC----STTSCCHHHHHHHHHGG--------------G
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHhhH--------------h
Confidence 4588999999999999974 57999999999999999999998 46899999999999832 4
Q ss_pred cCCcEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHH
Q 030336 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMAS 161 (179)
Q Consensus 88 ~~~~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~ 161 (179)
+.++|||||+||| +||+++|+|+||+||||+..+|+.+..|+ +.+.|+++|++|..|+|++
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~-------------~~~~l~~~gi~v~~g~l~~ 140 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGR-------------GISMMKEAGIEVREGILAD 140 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTH-------------HHHHHHTTTCEEEECTTHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhH-------------HHHHHHhCCeEEEeCCccc
Confidence 6899999999999 79999999999999999998887655432 1345778999999999999
Q ss_pred HHHHHHHHHHHh
Q 030336 162 EAVSLFRSFYEQ 173 (179)
Q Consensus 162 e~~~l~~~f~~~ 173 (179)
||.+|++.||.+
T Consensus 141 e~~~l~~~f~~~ 152 (373)
T 2b3z_A 141 QAERLNEKFLHF 152 (373)
T ss_dssp HHHHHTHHHHHH
T ss_pred ccccccceeeee
Confidence 999999999975
No 11
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=8.6e-34 Score=240.98 Aligned_cols=132 Identities=31% Similarity=0.433 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 13 LAFMDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~--~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+.||++|+++|+++... +++|||||||+||+||++|+|. .+++.|||++||+++.+. +..+.+
T Consensus 15 ~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~~-----------~~~~~g 79 (360)
T 2hxv_A 15 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHP----YFGGPHAERMAIESARKK-----------GEDLRG 79 (360)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECC----STTSCCHHHHHHHHHHHT-----------TCCCTT
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHHHhc-----------CCCcCC
Confidence 46899999999998753 6999999999999999999998 468999999999998642 235799
Q ss_pred cEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHH
Q 030336 91 CCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAV 164 (179)
Q Consensus 91 ~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~ 164 (179)
+|||||+||| +||+++|+|+||+||||+..+|+. ..|+ +.+.|+++|++|..|+|++||.
T Consensus 80 ~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~-------------g~~~l~~~gi~v~~g~l~~e~~ 145 (360)
T 2hxv_A 80 ATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGN-------------GVEKFRNHGIEVIEGVLEEEVK 145 (360)
T ss_dssp CEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCC-------------HHHHHHTTTCEEEECTTHHHHH
T ss_pred cEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhh-------------HHHHHHhCCcEEEECCccccch
Confidence 9999999999 799999999999999999988875 3221 2356778999999999999999
Q ss_pred HHHHHHHHh
Q 030336 165 SLFRSFYEQ 173 (179)
Q Consensus 165 ~l~~~f~~~ 173 (179)
+|++.||.+
T Consensus 146 ~l~~~f~~~ 154 (360)
T 2hxv_A 146 KLCEFFITY 154 (360)
T ss_dssp HHTHHHHHH
T ss_pred hccceeeec
Confidence 999999964
No 12
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=2.4e-34 Score=247.50 Aligned_cols=134 Identities=28% Similarity=0.416 Sum_probs=116.0
Q ss_pred CHhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 9 SPDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~--~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
++.|+.||++|+++|+++.. .+++|||||||+||+||+.|+|. ..++.|||++||+++..
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~g~~HAE~~Ai~~a~~-------------- 88 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRMAGE-------------- 88 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECC----CTTSCCHHHHHHHHHGG--------------
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCC----CCCccHHHHHHHHHhhH--------------
Confidence 34689999999999999973 56999999999999999999998 46899999999999832
Q ss_pred ccCCcEEEecCCCc------HHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcH
Q 030336 87 KFSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMA 160 (179)
Q Consensus 87 ~~~~~~ly~T~EPC------~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~ 160 (179)
.+.++|||||+||| +||+++|+|+||+||||+..+|+....|. +.+.|+++||+|..|+|+
T Consensus 89 ~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~-------------g~~~l~~~gi~v~~g~l~ 155 (402)
T 2g6v_A 89 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGR-------------GLYRLQQAGIDVSHGLMM 155 (402)
T ss_dssp GGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTT-------------HHHHHHHTTCCEEECTTT
T ss_pred hcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccch-------------HHHHHHhCCcEEEeCCcc
Confidence 36899999999999 69999999999999999998777543321 235677899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030336 161 SEAVSLFRSFYEQ 173 (179)
Q Consensus 161 ~e~~~l~~~f~~~ 173 (179)
+||.+|++.||.+
T Consensus 156 ~e~~~l~~~f~~~ 168 (402)
T 2g6v_A 156 SEAEQLNKGFLKR 168 (402)
T ss_dssp THHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhc
Confidence 9999999999975
No 13
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=100.00 E-value=1.2e-33 Score=219.58 Aligned_cols=124 Identities=25% Similarity=0.261 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccC---------------CCCccchHHHHHHHHHHHh
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTET---------------RNATRHAEMEAIDVLLDQW 74 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~---------------~~~~~HAE~~Ai~~~~~~~ 74 (179)
..|+.||++|+++|+++. .+++|||||||+||+||++|+|..... .+++.|||++||.++.++.
T Consensus 40 ~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g 118 (184)
T 2hvw_A 40 SWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG 118 (184)
T ss_dssp CHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC
Confidence 468999999999999997 579999999999999999999986532 2679999999999987652
Q ss_pred hhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEE
Q 030336 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKC 154 (179)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v 154 (179)
..+.++|||||+|||+||+++|+|+||+||||+.++++... +.+.|++.||+|
T Consensus 119 -----------~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~----------------~~~~L~~aGIeV 171 (184)
T 2hvw_A 119 -----------ISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF----------------AIELMTQKEVEY 171 (184)
T ss_dssp -----------CCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH----------------HHHHHHHHTCEE
T ss_pred -----------CCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH----------------HHHHHHHCCCEE
Confidence 35799999999999999999999999999999998765321 135688899999
Q ss_pred ecCCcHH
Q 030336 155 TGGVMAS 161 (179)
Q Consensus 155 ~~gvl~~ 161 (179)
..+++++
T Consensus 172 ~~~~~~~ 178 (184)
T 2hvw_A 172 VQHDVPR 178 (184)
T ss_dssp EECCCCC
T ss_pred EEecchh
Confidence 8877654
No 14
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=100.00 E-value=1.3e-33 Score=221.15 Aligned_cols=127 Identities=25% Similarity=0.349 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCC-----------------------------------
Q 030336 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR----------------------------------- 56 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~----------------------------------- 56 (179)
|+.||++|+.+|++|. .+++|||||||++|+||++|+|.++...
T Consensus 3 d~~fM~~A~~~A~rs~-~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESK-CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST 81 (193)
T ss_dssp HHHHHHHHHHHHTTCC-CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccccc
Confidence 7899999999999997 4699999999999999999999987521
Q ss_pred ------------------CCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEe
Q 030336 57 ------------------NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118 (179)
Q Consensus 57 ------------------~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~ 118 (179)
+++.|||++||.++.++. ..+.++|||||+|||+||+++|+++||+||||+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g-----------~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~ 150 (193)
T 1vq2_A 82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENG-----------SSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC 150 (193)
T ss_dssp -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHT-----------CCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEE
T ss_pred cccccchhhccccccccCCCCCCHHHHHHHHHHhcC-----------CCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEe
Confidence 247899999999987652 357899999999999999999999999999999
Q ss_pred eeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHH
Q 030336 119 CANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSL 166 (179)
Q Consensus 119 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l 166 (179)
.++++.++.+ .+.|++.||+|.. +.++++.+|
T Consensus 151 ~~~~~~~~~~---------------~~~l~~aGI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 151 ETYDKNKPGW---------------DDILRNAGIEVFN-VPKKNLNKL 182 (193)
T ss_dssp ECCTTCCTTT---------------THHHHHTTCEEEE-CCGGGCCSS
T ss_pred cCCCCcchHH---------------HHHHHHCCCEEEE-eCHHHHHHh
Confidence 8888764321 2567788999987 766666544
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.5e-34 Score=220.12 Aligned_cols=141 Identities=22% Similarity=0.298 Sum_probs=109.5
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEeeCCCccC------------CC-------CccchH
Q 030336 4 SGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTET------------RN-------ATRHAE 63 (179)
Q Consensus 4 ~~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv-~~g~ii~~g~n~~~~~------------~~-------~~~HAE 63 (179)
+.+.-...|+.||++|+++|+++.. +++||||||| +||+||++|+|..+.. .+ .+.|||
T Consensus 5 ~~~~~~~~d~~~M~~A~~~A~~s~~-p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE 83 (178)
T 2w4l_A 5 KRDDYLEWPEYFMAVAFLSAQRSKD-PNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAE 83 (178)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCCC-SSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHH
Confidence 3444456789999999999999985 4999999999 5999999999987532 23 379999
Q ss_pred HHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHhCCCEEEEeeeCCC-CCccccccccccccccccc
Q 030336 64 MEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK-FGGCGSILSLHLSDSKMLN 142 (179)
Q Consensus 64 ~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~~vvy~~~~~~-~g~~~~~~~l~~~~~~~~~ 142 (179)
++||.++.. ..+.++|||||+|||+||+++|+|+||+||||+...+. .... ..
T Consensus 84 ~~AI~~a~g-------------~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~-------------~~ 137 (178)
T 2w4l_A 84 LNAIMNKNL-------------TDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEA-------------TA 137 (178)
T ss_dssp HHHHHC-----------------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHH-------------HH
T ss_pred HHHHHHhcC-------------CCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcch-------------HH
Confidence 999998731 35789999999999999999999999999999986222 1100 01
Q ss_pred cCcccCCcCcEEecCCcHHHHHHHHHHHHHh
Q 030336 143 SGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173 (179)
Q Consensus 143 ~~~~l~~~~i~v~~gvl~~e~~~l~~~f~~~ 173 (179)
+.+.|++.||+|.. |++++.+|+..|...
T Consensus 138 ~~~~L~~aGI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 138 ARLLFNMAGVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp HHHHHHHHTCEEEE--CCCSCSEEEEEGGGC
T ss_pred HHHHHHHCCCEEEE--ccHHHHHHHHHHHhh
Confidence 24678889999986 778888887777654
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.93 E-value=2.8e-26 Score=181.23 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCC
Q 030336 20 IQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEP 99 (179)
Q Consensus 20 i~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EP 99 (179)
++.++.....+|+|||||||++|+||+.|. .++.|||++||+ . ..+.++|||+|+||
T Consensus 10 vd~~k~~~t~PNPpVGAVIVkDGeIIA~Ge-------~gTaHAEInAIr----g------------~~L~GaTLYVTLEP 66 (278)
T 3g8q_A 10 VDVKKILNEIPKRTVTAALLEGGEIVAVEE-------ADDEHAERKLVR----R------------HDVEGKVVFVTARP 66 (278)
T ss_dssp EEHHHHHHHSCCSSCEEEEEETTEEEEEEE-------CSSSCHHHHHHH----H------------SCCTTCEEEESSCC
T ss_pred hhHhHHhccCCCCCEEEEEEECCEEEEecC-------CCCCCHHHHHhC----C------------CCCCCcEEEEeCCc
Confidence 345555666789999999999999999991 299999999996 1 24689999999999
Q ss_pred cHHHHHHHHHhCCCEEEEeeeCC
Q 030336 100 CIMCAAALSILGIKEVYYGCANE 122 (179)
Q Consensus 100 C~mC~~ai~~sgi~~vvy~~~~~ 122 (179)
|+||+++|+|+||+||||+..+.
T Consensus 67 C~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 67 CLYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp CHHHHHHHHTTTCCEEEEEECSS
T ss_pred hHHHHHHHHHhCCCEEEEEecCC
Confidence 99999999999999999999754
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.83 E-value=1.8e-20 Score=145.87 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=87.9
Q ss_pred CCcEEEEEee--C---CeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHH
Q 030336 31 EVPVGCVILE--D---GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAA 105 (179)
Q Consensus 31 ~~pvGaviv~--~---g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ 105 (179)
+..+.|..|+ + +.|+++|+|.. .+++.|||++||+++.+++.. ....++|+|||+|||+||+.
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~~---------~~~~g~TlYvTlePC~~Ca~ 99 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFDP---------ALRYNVTWYVSSSPCAACAD 99 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcCc---------cccCCeEEEEEcChHHHHHH
Confidence 6779999995 3 56999999984 368999999999998754321 12249999999999999999
Q ss_pred HHHHh-----CCCEEEEeeeCCCCCccccccccccccccccccCcccCCcCcEEecCCcHHHHHHHHHHHHH
Q 030336 106 ALSIL-----GIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYE 172 (179)
Q Consensus 106 ai~~s-----gi~~vvy~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~~i~v~~gvl~~e~~~l~~~f~~ 172 (179)
+|+++ ||++|||+..++.... +... .+...|+++||+|.. +-.++....|..|..
T Consensus 100 aIi~al~~~~gI~rVV~~~~d~~~~~----------p~~~-~g~~~L~~aGI~V~~-~~~~e~~~~w~~fv~ 159 (190)
T 2nyt_A 100 RIIKTLSKTKNLRLLILVGRLFMWEE----------PEIQ-AALKKLKEAGCKLRI-MKPQDFEYVWQNFVE 159 (190)
T ss_pred HHHHhhhhcCCccEEEEEeecCCcCC----------hHHH-HHHHHHHHCCCEEEE-ecHHHHHHHHHHHHH
Confidence 99999 9999999987553110 1000 235678899999875 334566667777766
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.76 E-value=4.4e-18 Score=125.98 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~-~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
++++|++|++.+++++.. +++||||+|+. ||+|+ .|+|..+.+.+++.|||+.||.++... +. ..+.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~---------~~~~ 71 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GD---------TEFQ 71 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TC---------CCEE
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CC---------CCeE
Confidence 678999999999999987 68999999995 99999 799999999999999999999999876 32 2468
Q ss_pred CcEEEec----CCCcHHHHHHHHHhC
Q 030336 90 KCCLYVT----CEPCIMCAAALSILG 111 (179)
Q Consensus 90 ~~~ly~T----~EPC~mC~~ai~~sg 111 (179)
.+++|++ ++||.||.++|.+.+
T Consensus 72 ~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 72 MLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp EEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred EEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 8999995 999999999999987
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.71 E-value=1.4e-16 Score=117.04 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=80.6
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhh
Q 030336 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (179)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv-~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (179)
++++.|+++|+.|++++++++..+++||||+|+ +||+|+ .|+|.. +.+++.|||+.||.++... ..
T Consensus 2 ~l~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~--------- 68 (130)
T 2z3g_A 2 PLSQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AA--------- 68 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TC---------
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CC---------
Confidence 478889999999999999998777899999999 499999 699987 4789999999999999775 21
Q ss_pred hccCCcEEEe-----cCCCcHHHHHHHHHhCCC
Q 030336 86 EKFSKCCLYV-----TCEPCIMCAAALSILGIK 113 (179)
Q Consensus 86 ~~~~~~~ly~-----T~EPC~mC~~ai~~sgi~ 113 (179)
..+...++|+ +++||.||.+.|.+.+-.
T Consensus 69 ~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 69 GNLTCIVAIGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp CCEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred CceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence 2467888888 689999999999998743
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.70 E-value=8.5e-17 Score=120.27 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=80.0
Q ss_pred HhHHHHHHHHHHHHHHhhcC-CCCcEEEEEe-eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhc
Q 030336 10 PDTLAFMDLAIQQAKLALDS-LEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~-~~~pvGaviv-~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (179)
.+++++|++|++.+++++.. .++||||+|+ +||+|+ .|+|..+.+.+.+.|||++||.++... +. ..
T Consensus 13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~---------~~ 81 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GY---------KD 81 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TC---------CC
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CC---------Cc
Confidence 45678999999999999876 4899999999 599999 799999988899999999999999876 21 24
Q ss_pred cCCcEEEec-----CCCcHHHHHHHHHhC
Q 030336 88 FSKCCLYVT-----CEPCIMCAAALSILG 111 (179)
Q Consensus 88 ~~~~~ly~T-----~EPC~mC~~ai~~sg 111 (179)
+....+|++ .+||.||.++|.+.+
T Consensus 82 l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 82 FRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp EEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred eEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 688899998 999999999999997
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.51 E-value=7.7e-14 Score=103.82 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccC
Q 030336 11 DTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGaviv-~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.|+++|+.|++.+++++..+. ||||+|+ +||+|+ .|+|..+.+.+++.|||++||.++..... ....
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~----------~~~~ 70 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQK----------KVTH 70 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTC----------CEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCC----------CcEE
Confidence 568899999999999998888 9999998 499999 89999999999999999999999876521 1345
Q ss_pred CcEEEe--------cCCCcHHHHHHHHHhCCCEEEEe
Q 030336 90 KCCLYV--------TCEPCIMCAAALSILGIKEVYYG 118 (179)
Q Consensus 90 ~~~ly~--------T~EPC~mC~~ai~~sgi~~vvy~ 118 (179)
...++. ++-||.||.+.|.+.+-.-.|+-
T Consensus 71 ~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~ 107 (142)
T 3b8f_A 71 SICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAI 107 (142)
T ss_dssp EEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEEC
T ss_pred EEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEE
Confidence 566665 34599999999999875444443
No 22
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.47 E-value=1.7e-13 Score=101.36 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=76.6
Q ss_pred CCCCHhHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhh
Q 030336 6 EEWSPDTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSE 83 (179)
Q Consensus 6 ~~~~~~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~ 83 (179)
.+...+++++++.|++.+++++... ++||||+|+. ||+|+ +|.|..+.+.+.+.|||+.||.++......
T Consensus 4 ~m~~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~------- 75 (138)
T 3r2n_A 4 SMGDVNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGG------- 75 (138)
T ss_dssp ---CCCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC-------
T ss_pred CCchHhHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCC-------
Confidence 3334567789999999999998654 8999999985 99999 899999988889999999999998765321
Q ss_pred hhhccCCcEEEec------CCCcHHHHHHHHHhCCCEEEEe
Q 030336 84 IAEKFSKCCLYVT------CEPCIMCAAALSILGIKEVYYG 118 (179)
Q Consensus 84 ~~~~~~~~~ly~T------~EPC~mC~~ai~~sgi~~vvy~ 118 (179)
.+. .++++ ..||.+|.+.|.+.+-..|+..
T Consensus 76 ---~i~--aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 76 ---RLV--AVYCVDGNGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp ---CEE--EEEEECTTSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred ---ceE--EEEEEcCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 122 24444 7999999999999763335443
No 23
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.46 E-value=4.1e-13 Score=99.87 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=76.8
Q ss_pred HhHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhc
Q 030336 10 PDTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~-~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (179)
.++++++++|++.+++++.. .++||||+|+. ||+|+ .|.|..+.+.+++.|||+.||.++...... ..
T Consensus 9 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~---------~~ 78 (142)
T 1r5t_A 9 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHR---------SG 78 (142)
T ss_dssp HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC---------SC
T ss_pred hHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCC---------Cc
Confidence 45678999999999999875 48999999995 99999 699999988999999999999998765321 11
Q ss_pred cCCcEEEec----C-CCcHHHHHHHHHhC
Q 030336 88 FSKCCLYVT----C-EPCIMCAAALSILG 111 (179)
Q Consensus 88 ~~~~~ly~T----~-EPC~mC~~ai~~sg 111 (179)
+....++.. . .||.+|.+.|.+.+
T Consensus 79 i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 79 WKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp CCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 567777773 5 89999999999986
No 24
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.43 E-value=9.2e-13 Score=97.76 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~-~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
.+++++++|++.+++++.. .+++|||+|+. ||+|+ .|.|..+.+.+.+.|||+.||.++..... ..+
T Consensus 11 ~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~----------~~~ 79 (141)
T 2d30_A 11 NSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD----------KEF 79 (141)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC----------CCE
T ss_pred CHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCC----------Cce
Confidence 3567899999999999876 48999999995 99998 89999998889999999999999876521 123
Q ss_pred CCcEEEec----CCCcHHHHHHHHHhC
Q 030336 89 SKCCLYVT----CEPCIMCAAALSILG 111 (179)
Q Consensus 89 ~~~~ly~T----~EPC~mC~~ai~~sg 111 (179)
....+++. ..||.+|.+.|.+.+
T Consensus 80 ~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 80 VAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp EEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred EEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 44455544 689999999999986
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=99.25 E-value=1.7e-11 Score=91.51 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~-~~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
+.+++++.|++....++.. .+++|||+|.. ||+|+ .|.|..+.+...+.|||+.||.++..... ..+
T Consensus 24 ~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~----------~~i 92 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGG----------GRL 92 (150)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC----------CCE
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCC----------Cce
Confidence 3568899999999998865 38999999985 99999 89999998888999999999999876532 122
Q ss_pred CCcEEEe----cCCCcHHHHHHHHHhC
Q 030336 89 SKCCLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~~sg 111 (179)
....++. ...||.+|.+.|.+.+
T Consensus 93 ~aiavv~~~~~~~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 93 VALSCVGPDGGVLMPCGRCRQVLLEHG 119 (150)
T ss_dssp EEEEEECTTSCBCCCCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 3333332 3689999999999975
No 26
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.22 E-value=6.6e-11 Score=97.48 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
+++++++.|++.+++++..+ ++||||+|+. ||+|+ +|.|..+...+++.|||..||.++..... + ...+
T Consensus 187 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~----~----~~~i 257 (294)
T 1ctt_A 187 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGY----D----YPDI 257 (294)
T ss_dssp CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTC----C----GGGE
T ss_pred ChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCC----C----cCCE
Confidence 45789999999999999766 8999999995 99888 79999999999999999999999876421 0 1246
Q ss_pred CCcEEEecCC----CcHHHHHHHHHhCC
Q 030336 89 SKCCLYVTCE----PCIMCAAALSILGI 112 (179)
Q Consensus 89 ~~~~ly~T~E----PC~mC~~ai~~sgi 112 (179)
....++.+.+ ||.||.+.|...+-
T Consensus 258 ~~i~vv~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 258 QRAVLAEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp EEEEEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred EEEEEEecCCCCcCccHHHHHHHHHHCC
Confidence 7888888776 99999999999764
No 27
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.09 E-value=5.4e-10 Score=92.04 Aligned_cols=87 Identities=23% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHH-HHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEeeCCCccC--CCCccchHHHHHHHHHHHhhhcCCChhhhhh
Q 030336 12 TLAFMD-LAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTET--RNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (179)
Q Consensus 12 ~~~~m~-~Ai~~A~~a~~~-~~~pvGaviv~-~g~ii~~g~n~~~~~--~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (179)
+++++. .|.+...+++.. .+++|||+++. ||+|+ .|.|..+.+ .+.+.|||.+||.++.....
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~----------- 116 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGE----------- 116 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCC-----------
Confidence 344444 444555557765 38999999995 99999 899988765 34689999999999876521
Q ss_pred ccCCcEEEecCCCcHHHHHHHHHhC
Q 030336 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (179)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~sg 111 (179)
-.-..+.++..||.+|.+.|.+.+
T Consensus 117 -~~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 117 -KALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp -CCEEEEEESSCCCHHHHHHHTTBT
T ss_pred -CcEEEEEEEcCCCHHHHHHHHHhC
Confidence 123456677899999999999986
No 28
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=99.08 E-value=7.8e-10 Score=81.53 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhcc
Q 030336 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (179)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (179)
.+.+++++|.+...+++... +++|||++.. ||+|+ .|.|..+.+...+.|||..||.++....... ..+
T Consensus 10 ~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~--------~~i 80 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRP--------GEF 80 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCT--------TCE
T ss_pred cHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCc--------ccE
Confidence 46788899999988888765 8999999985 99999 8999999888899999999999987652110 012
Q ss_pred CCcEEEe----cCCCcHHHHHHHHHhC
Q 030336 89 SKCCLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~~sg 111 (179)
....++. ..-||.+|.+.|.+.+
T Consensus 81 ~aiavv~~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 81 AAIAVVGETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp EEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 2222221 2579999999999974
No 29
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=99.04 E-value=2.8e-09 Score=80.20 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCCCHhHHHHHHHHHHHHHHhhcCCC-CcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhh
Q 030336 6 EEWSPDTLAFMDLAIQQAKLALDSLE-VPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSE 83 (179)
Q Consensus 6 ~~~~~~~~~~m~~Ai~~A~~a~~~~~-~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~ 83 (179)
++++++++++++.|++.... ....+ ++|||++.. ||+|+ .|.|..+ ...+.|||..||.++......
T Consensus 25 ~~L~~ed~~Li~~A~~a~~~-~PyS~~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~G~~------- 93 (158)
T 3oj6_A 25 EPLSAAGQNLIDTATSVING-IPVSDFYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAAGAT------- 93 (158)
T ss_dssp CBCCHHHHHHHHHHHHHHHT-SCCCSSSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHTTCC-------
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHhCCC-------
Confidence 46788899999999997664 22223 899999985 99999 8999875 667899999999998765321
Q ss_pred hhhccCCcEEEec-----CCCcHHHHHHHHHhCC
Q 030336 84 IAEKFSKCCLYVT-----CEPCIMCAAALSILGI 112 (179)
Q Consensus 84 ~~~~~~~~~ly~T-----~EPC~mC~~ai~~sgi 112 (179)
.+....++.. .-||.+|.+.|.+.+-
T Consensus 94 ---~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~ 124 (158)
T 3oj6_A 94 ---KLTHIVAIANEGRGILSPCGRCRQVLADLHP 124 (158)
T ss_dssp ---CEEEEEEEETTTTEEECCCHHHHHHHHHHST
T ss_pred ---ceEEEEEEeCCCCCcCCCCHHHHHHHHHhCC
Confidence 1222222222 3699999999999763
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.60 E-value=1.3e-07 Score=77.68 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCc--cCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCc
Q 030336 16 MDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTT--ETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (179)
Q Consensus 16 m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~--~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (179)
+.++-..+..++... +++|||++.. ||+|+ .|.|..+ .+...+.|||..||.++...... .=.
T Consensus 57 ~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~------------~i~ 123 (298)
T 4eg2_A 57 VALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK------------GVA 123 (298)
T ss_dssp HHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS------------CEE
T ss_pred HHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC------------ceE
Confidence 344444445566544 8899999885 99999 8999885 34557899999999998765211 123
Q ss_pred EEEecCCCcHHHHHHHHHhCC
Q 030336 92 CLYVTCEPCIMCAAALSILGI 112 (179)
Q Consensus 92 ~ly~T~EPC~mC~~ai~~sgi 112 (179)
.+.+..-||.+|.+.|.+.+-
T Consensus 124 ~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 124 DITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp EEEESSCCCHHHHHHHTTBTT
T ss_pred EEEeecCCCHHHHHHHHHhcC
Confidence 455678999999999999864
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.48 E-value=7.2e-07 Score=73.36 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCC
Q 030336 13 LAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (179)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~-~~pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (179)
+.+++.|++.+++++..+ +++|||+|.. ||+|+ .|.|-.+...+++.+||..||.++...... . .....
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~----~----~~i~a 263 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGES----F----EDIEA 263 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCC----G----GGEEE
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCC----c----cCeEE
Confidence 578899999999998665 7899999985 99999 899999999999999999999998664211 0 01233
Q ss_pred cEEEe----cCCCcHHHHHHHHHhC
Q 030336 91 CCLYV----TCEPCIMCAAALSILG 111 (179)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (179)
..++. ..-||.+|.+.|...+
T Consensus 264 iv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 264 AALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp EEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 33332 3469999999999875
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=95.48 E-value=0.013 Score=45.43 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=33.2
Q ss_pred CccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHh
Q 030336 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL 110 (179)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~s 110 (179)
...|||+.-|.+.... .+++ ...-..|-|+|..||+-|+..|+..
T Consensus 77 ~~~HAEl~FL~~~~~~----~Ld~----~~~Y~vTwy~SWSPC~~CA~~v~~F 121 (203)
T 3v4k_A 77 EGRHAELCFLDVIPFW----KLDL----DQDYRVTCFTSWSPCFSCAQEMAKF 121 (203)
T ss_pred CCCcHHHHHHHHhhhc----cCCC----CCeEEEEEEEeCCChHHHHHHHHHH
Confidence 3579999988876542 2322 1235678999999999999999864
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=94.91 E-value=0.017 Score=44.35 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=39.8
Q ss_pred CCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHHh-----CCCEEEEeee
Q 030336 56 RNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL-----GIKEVYYGCA 120 (179)
Q Consensus 56 ~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~s-----gi~~vvy~~~ 120 (179)
..+..|||+.=|..... ..++++ ..-..|-|+|..||+-|+..|... +|+=.||.+.
T Consensus 61 ~~~~~HAE~~Fl~~~~~----~~L~~~----~~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aR 122 (190)
T 3vow_A 61 SETHCHAERCFLSWFCD----DILSPN----TKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTAR 122 (190)
T ss_dssp SCGGGSHHHHHHHHHSS----TTSCTT----SEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CcccccHHHHHHHHHhh----cCCCCC----ceEEEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEe
Confidence 45678999998877532 223322 223579999999999999988753 5666677664
No 34
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=62.78 E-value=4.5 Score=34.68 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhh
Q 030336 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (179)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (179)
..|+.-...|.+.|++. ..|.+|+-+.||+|| +|.+. .+.+|--.+|-+|.+.+..
T Consensus 343 ~~dR~vv~~A~~~ae~t----~~pa~AieL~DG~Iv-TGKtS------~LlgasaA~lLNAlK~Lag 398 (507)
T 3bh1_A 343 ASQRVVVEPARQVEERT----SLPGCAIELVDGSII-TGATS------DLLGCSSSMLLNALKHLAG 398 (507)
T ss_dssp GGGSTTHHHHHHHHHHH----SSCEEEEECTTSCEE-EEECC------SSBCHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHcC
Confidence 33444444455555543 478888888999999 78875 6778888888888887754
No 35
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=39.33 E-value=17 Score=27.97 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.6
Q ss_pred hccCCcEEEecCCCcHHHHH
Q 030336 86 EKFSKCCLYVTCEPCIMCAA 105 (179)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (179)
..|+-|--++..+||.-|+.
T Consensus 69 ~~C~~C~nlte~~~C~IC~d 88 (212)
T 3vdp_A 69 RYCKICFNITDKEVCDICSD 88 (212)
T ss_dssp EECTTTCCEESSSSCHHHHC
T ss_pred CcCCCCCCCCCCCcCCCCCC
Confidence 36899999999999999985
No 36
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=36.05 E-value=21 Score=27.77 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.5
Q ss_pred hccCCcEEEecCCCcHHHHH
Q 030336 86 EKFSKCCLYVTCEPCIMCAA 105 (179)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (179)
..|+.|--++..+||+-|+.
T Consensus 55 ~~C~~C~nlte~~~C~IC~d 74 (228)
T 1vdd_A 55 HVCPICFNITDAEKCDVCAD 74 (228)
T ss_dssp EECSSSCCEESSSSCHHHHC
T ss_pred eEcCCCCCCcCCCcCCCCCC
Confidence 36889999999999999984
No 37
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=35.35 E-value=1.1e+02 Score=21.07 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=31.1
Q ss_pred EEEEeeCCeEEEE-eeCCCc-cCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCC
Q 030336 35 GCVILEDGKVIAA-GRNRTT-ETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEP 99 (179)
Q Consensus 35 Gaviv~~g~ii~~-g~n~~~-~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EP 99 (179)
|+||.++|+++.. +....+ .....-..||..|+..+++.....+ ....++|+-.+-
T Consensus 22 G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g---------~~~v~i~tDS~~ 79 (149)
T 2ehg_A 22 GFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLG---------ISSPIIKGDSQL 79 (149)
T ss_dssp EEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHT---------CCSCEEEESCHH
T ss_pred EEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcC---------CCEEEEEeChHH
Confidence 6677778887632 222110 0012345799999999877654321 245566665443
No 38
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=31.69 E-value=25 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=20.9
Q ss_pred EEEEEeeCCeEEEEeeCC------CccCCCCccchHH
Q 030336 34 VGCVILEDGKVIAAGRNR------TTETRNATRHAEM 64 (179)
Q Consensus 34 vGaviv~~g~ii~~g~n~------~~~~~~~~~HAE~ 64 (179)
=||||+++|+|++.|+-- .....-++.|---
T Consensus 135 DGAvII~~~rI~aA~~~LPls~~~~i~~~lGTRHRAA 171 (205)
T 2fb5_A 135 DGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAA 171 (205)
T ss_dssp SSEEEEETTEEEEEEEBCCCCCCTTSCTTCCHHHHHH
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCcCccccHHHHHH
Confidence 599999999999887743 1112346677533
No 39
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=29.69 E-value=1.1e+02 Score=21.99 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=33.9
Q ss_pred EEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHH
Q 030336 34 VGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMC 103 (179)
Q Consensus 34 vGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC 103 (179)
.|++|+.+|+++..+... ....-..||..|+..+++... ....++|+.-+-...|
T Consensus 41 ~G~vi~~~~~~~~~~~~~---~~~Tnn~aEl~Ai~~AL~~~~------------~~~v~I~tDS~~vi~~ 95 (165)
T 3p1g_A 41 AGAAVTTETEVIWARALP---AGTSAQRAELIALTQALKMAE------------GKKLNVYTDSRYAFAT 95 (165)
T ss_dssp EEEEEECSSCEEEEEEEC---TTCCHHHHHHHHHHHHHHHTB------------TSEEEEEECCHHHHHH
T ss_pred EEEEEEECCEEEEEecCC---CCCcHHHHHHHHHHHHHHHcc------------CceEEEEEchHHHHhh
Confidence 566666777766444222 122336899999999987641 2466777776544444
No 40
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=28.43 E-value=2.8e+02 Score=24.18 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCCcEEEEEeeCCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEe-cCC
Q 030336 20 IQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYV-TCE 98 (179)
Q Consensus 20 i~~A~~a~~~~~~pvGaviv~~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~-T~E 98 (179)
+..|++.... -..-+-|+++||+.|+.|.-+. .-.|+-..|+.++. ..+.|+.+-. -.-
T Consensus 414 L~fAw~v~K~-vkSNAIv~akdg~tvGiGaGQ~-----sRV~s~r~A~~kAg--------------~~~~G~vlaSDAFF 473 (523)
T 3zzm_A 414 LVFAWRACRA-VKSNAIVIAADGATVGVGMGQV-----NRVDAARLAVERGG--------------ERVRGAVAASDAFF 473 (523)
T ss_dssp HHHHHHHGGG-SCSSCEEEEETTEEEEEECSCS-----SHHHHHHHHHHHHG--------------GGCTTCEEEESSCC
T ss_pred HHHHHHHHHh-ccCceEEEEECCeEEEECCCCc-----chHHHHHHHHHHhc--------------cccCCeEEEeccCc
Confidence 4445555432 1122335568999999998863 33477777888772 2457777766 467
Q ss_pred CcHHHHHHHHHhCCCEEE
Q 030336 99 PCIMCAAALSILGIKEVY 116 (179)
Q Consensus 99 PC~mC~~ai~~sgi~~vv 116 (179)
|=+-|......+||+-|+
T Consensus 474 PF~D~ve~aa~aGv~aIi 491 (523)
T 3zzm_A 474 PFPDGLETLAAAGVTAVV 491 (523)
T ss_dssp SSHHHHHHHHHTTCCEEE
T ss_pred CCCccHHHHHHcCCEEEE
Confidence 999999999999999765
No 41
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=24.88 E-value=16 Score=27.01 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=8.3
Q ss_pred ecCCCcHHHHH
Q 030336 95 VTCEPCIMCAA 105 (179)
Q Consensus 95 ~T~EPC~mC~~ 105 (179)
.-.+||++|.-
T Consensus 36 ~gl~PC~LCi~ 46 (176)
T 2zuq_A 36 MLLKPSVLCIY 46 (176)
T ss_dssp SCCCCCTTHHH
T ss_pred cCCCCcHhHHH
Confidence 35899998864
No 42
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=22.06 E-value=1.1e+02 Score=18.46 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=10.4
Q ss_pred CcEEEEEe-eCCeEEE
Q 030336 32 VPVGCVIL-EDGKVIA 46 (179)
Q Consensus 32 ~pvGaviv-~~g~ii~ 46 (179)
..+|+++| ++|++++
T Consensus 21 ~~i~~~~V~d~~~lvG 36 (70)
T 3ghd_A 21 NKAGSAVVMEGDEILG 36 (70)
T ss_dssp TTCSEEEEEETTEEEE
T ss_pred cCCCEEEEEECCEEEE
Confidence 44677666 6899873
No 43
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=21.47 E-value=1.2e+02 Score=20.15 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=23.9
Q ss_pred cEEEEEee-CCeEEEEeeCCCccCCCCccchHHHHHHHHHHHhh
Q 030336 33 PVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (179)
Q Consensus 33 pvGaviv~-~g~ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (179)
..|+++.+ +|+++....-... ......||..|+..+++...
T Consensus 20 G~G~v~~~~~g~~~~~~~~~~~--~~tn~~aEl~A~~~aL~~a~ 61 (140)
T 3u3g_D 20 GIGVVITDEKGNTLHESSAYIG--ETTNNVAEYEALIRALEDLQ 61 (140)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE--EECHHHHHHHHHHHHHHHHG
T ss_pred EEEEEEEeCCCCEEEEEEeeCC--CCchHHHHHHHHHHHHHHHH
Confidence 46677766 6776522111111 11234799999999887654
No 44
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=21.02 E-value=2.5e+02 Score=20.61 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=34.6
Q ss_pred cEEEEEeeCCeEEEEeeCCCccCCCC--ccchHHHHHHHHHHHhhhcCCChhhhhhccCCcEEEecCCCcHHHHHHHHH-
Q 030336 33 PVGCVILEDGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSI- 109 (179)
Q Consensus 33 pvGaviv~~g~ii~~g~n~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~- 109 (179)
|.--+| .+|+|+......... ..+ ..|++.. ++. .+. ..+ .-...++|++ .-|+.|..+..+
T Consensus 126 p~t~li-~~G~i~~~~~~~~~~-~~~~~~~~~~~i-l~~-l~~---~~i-------~~~~i~ly~~-~~Cp~C~~a~~~L 190 (241)
T 1nm3_A 126 RYSMLV-KNGVVEKMFIEPNEP-GDPFKVSDADTM-LKY-LAP---QHQ-------VQESISIFTK-PGCPFCAKAKQLL 190 (241)
T ss_dssp CEEEEE-ETTEEEEEEECCSCS-SCCCSSSSHHHH-HHH-HCT---TSC-------CCCCEEEEEC-SSCHHHHHHHHHH
T ss_pred eEEEEE-ECCEEEEEEEeccCC-CccceecCHHHH-HHH-hhh---hcc-------ccceEEEEEC-CCChHHHHHHHHH
Confidence 344455 999999776553211 111 1455432 222 211 101 1245677765 799999987665
Q ss_pred --hCCC
Q 030336 110 --LGIK 113 (179)
Q Consensus 110 --sgi~ 113 (179)
.||.
T Consensus 191 ~~~~i~ 196 (241)
T 1nm3_A 191 HDKGLS 196 (241)
T ss_dssp HHHTCC
T ss_pred HHcCCc
Confidence 4554
Done!