BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030337
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 292 bits (748), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 141/145 (97%), Positives = 143/145 (98%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY
Sbjct: 34 DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT QGEEL+KLIGSP
Sbjct: 94 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSP 153
Query: 136 AYIECSSKTQQNVKAVFDAAIKVVL 160
YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 154 IYIECSSKTQQNVKAVFDAAIKVVL 178
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 133/145 (91%), Positives = 143/145 (98%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY
Sbjct: 36 DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 95
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
ENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPITT QGEEL+KLIG+P
Sbjct: 96 ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155
Query: 136 AYIECSSKTQQNVKAVFDAAIKVVL 160
AYIECSSK+Q+NVK VFDAAI+VVL
Sbjct: 156 AYIECSSKSQENVKGVFDAAIRVVL 180
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/145 (86%), Positives = 136/145 (93%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASY
Sbjct: 34 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 93
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
EN+ KKW+PEL+HYAPG+PI+LVGTKLDLRDDKQF DHPGA ITTAQGEELRK+IG+
Sbjct: 94 ENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAV 153
Query: 136 AYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECSSKTQQNVKAVFD AI+V L
Sbjct: 154 RYLECSSKTQQNVKAVFDTAIRVAL 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/145 (80%), Positives = 127/145 (87%), Gaps = 2/145 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DY+PTVFDNFSANV VDG VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLISKASY
Sbjct: 37 DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY 96
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
ENV KKW+PELR +AP VPI+LVGTKLDLRDDK + DH IT+ QGEELRK IG+
Sbjct: 97 ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAA 154
Query: 136 AYIECSSKTQQNVKAVFDAAIKVVL 160
AYIECSSKTQQNVKAVFD AIKVVL
Sbjct: 155 AYIECSSKTQQNVKAVFDTAIKVVL 179
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VD VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S ASY
Sbjct: 31 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG L K I
Sbjct: 91 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVLXXXXXXXXXXXSHRACSIL 179
S Y+ECS+ TQ+ +K VFD AI+ VL RACS+L
Sbjct: 151 SVKYLECSALTQRGLKTVFDEAIRAVL----CPQPTRQQKRACSLL 192
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 189 bits (481), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 50 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 109
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 110 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 169
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 170 AVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 189 bits (480), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 41 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 100
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 101 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 160
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 161 AVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 178 AVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 38 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 97
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 98 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 157
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 158 AVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 178 AVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 2/146 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVV 159
+ Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VD VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S ASY
Sbjct: 38 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 97
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG L K I
Sbjct: 98 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 157
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
S Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 158 SVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VD VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S ASY
Sbjct: 37 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 96
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG L K I
Sbjct: 97 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 156
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
S Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 157 SVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PI+LVGTKLDLRDDK + PIT QG + + IG
Sbjct: 91 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
S Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 SVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 32 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PI+LVGTKLDLRDDK + PIT QG + + IG
Sbjct: 92 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
S Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 152 SVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 32 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PI+LVGTKLDLRDDK + PIT QG + + IG
Sbjct: 92 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
S Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 152 SVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DV ++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 186 bits (473), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DV ++ FSL+S AS+
Sbjct: 35 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 94
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 95 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 154
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 155 AVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 34 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 93
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 94 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 153
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 154 AVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 178 AVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DV ++ FSL+S AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 AVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY DV ++ FSL+S AS+
Sbjct: 33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 92
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
ENV KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 93 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 153 AVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 182 bits (463), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
+V KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 182 bits (463), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
+V KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PTVFDN+SANV+VDG VNLGLWDTAG EDY+RLRPLSY DVF++ FSL+S AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIG 133
+V KW PE+RH+ P PIILVGTKLDLRDDK + PIT QG + K IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160
+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 113/166 (68%), Gaps = 21/166 (12%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY--------------RG-- 59
+Y+PTVFDN+SANV+VDG VNLGLWDTAGQEDY+RLRPLSY RG
Sbjct: 33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKD 92
Query: 60 ---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDH 114
ADVF++ FSL+S AS+ENV KW PE+RH+ P PIILVGTKLDLRDDK +
Sbjct: 93 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 152
Query: 115 PGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
PIT QG + K IG+ Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 153 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 198
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
++YVPTVFD+++ +V V G LGL+DTAGQEDY+RLRPLSY DVF++ FS+++ AS
Sbjct: 45 EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS 104
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLI 132
++NV ++W+PEL+ YAP VP +L+GT++DLRDD + ++ PI QG++L K I
Sbjct: 105 FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164
Query: 133 GSPAYIECSSKTQQNVKAVFDAAIKVVL 160
G+ Y+ECS+ TQ+ +K VFD AI +L
Sbjct: 165 GACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 20 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 79
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 80 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 139
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 140 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 21 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 81 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 140
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 141 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 26 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 86 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 145
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 146 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 22 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 82 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 141
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 142 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 29 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 88
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 89 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 148
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 149 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 22 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 82 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 141
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 142 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 21 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 81 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 140
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 141 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 26 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 86 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 145
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 146 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 23 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 82
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 83 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 142
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 143 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V + G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A+V VDG V L LWDTAGQEDY+RLRPLSY ++V ++ FS+ S E
Sbjct: 39 YVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
NV +KWI E+ H+ GVPIILVG K+DLR+D Q + G P+T+ +G+ + IG+
Sbjct: 99 NVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGA 158
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y ECS+KT V+ VF+AA + L
Sbjct: 159 TGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y+PT FDNFSA V VDG V L L DTAGQ+++++LRPL Y D+F+L FS++S +S+
Sbjct: 48 EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF 107
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIG 133
+NV++KW+PE+R + P PIILVGT+ DLR+D + I D P+ + L + I
Sbjct: 108 QNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167
Query: 134 SPAYIECSSKTQQNVKAVFDAAI 156
+ +YIECS+ TQ+N+K VFDAAI
Sbjct: 168 AASYIECSALTQKNLKEVFDAAI 190
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 154 FGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 153 bits (386), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 154 FGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 156 FGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 154 FGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 32 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 92 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 152 FGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 37 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 97 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 157 FGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 35 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 95 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 155 FGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 156 FGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 154 FGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 152 bits (385), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 35 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 95 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 155 FGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 152 bits (385), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 32 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 92 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 152 FGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 152 bits (385), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 156 FGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 152 bits (385), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVP VFDN++ V++ G LGL+DTAGQEDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 38 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 98 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 157
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 158 FGYMECSAKTKDGVREVFEMATRAAL 183
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 152 bits (384), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+R RPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ A+G ++ IG+
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 154 FGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAG EDY+RLRPLSY DVF
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 78
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 139 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR D+ + + P+ + +G ++ I +
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 153
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVLXXXXXXXXXXXSHRACSIL 179
Y+ECS+KT++ V+ VF+ A + L R C IL
Sbjct: 154 FGYLECSAKTKEGVREVFEMATRAGL-----QVRKNKRRRGCPIL 193
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
Query: 6 IICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
++ +Y+ K +YVPTVFDN++ V++ G LGL+DTAG EDY+RLRPLSY DVF
Sbjct: 23 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 82
Query: 64 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPIT 121
++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD + PIT
Sbjct: 83 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 142
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
E+L + + + Y+ECS+ TQ+ +K VFD AI L
Sbjct: 143 PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR D+ + P+ + +G ++ I +
Sbjct: 114 NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT++ V+ VF+ A + L
Sbjct: 174 FGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR D+ + P+ + +G ++ I +
Sbjct: 114 NIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT++ V+ VF+ A + L
Sbjct: 174 FGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 97/146 (66%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAG EDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 37 YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGS 134
N+ +KW PE++H+ P VPIILVG K DLR+D+ + P+ +G ++ IG+
Sbjct: 97 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT+ V+ VF+ A + L
Sbjct: 157 FGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+N+ A++ VDG V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLIGS 134
N+ +KW+PE++H+ P VPIILV K DLR D+ + P+ T G + I +
Sbjct: 114 NIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA 173
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVVL 160
Y+ECS+KT++ V+ VF+ A + L
Sbjct: 174 YDYLECSAKTKEGVREVFETATRAAL 199
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ Y PTVF+ + N+ V G V+L +WDTAGQ+DY+RLRPL Y A V +L F + S S
Sbjct: 61 ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS 120
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLI 132
++N+ +W PE+ H+ VPII+VG K DLR DK + G P+T +G+E+ + +
Sbjct: 121 FDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180
Query: 133 GSPAYIECSSKTQQNVKAVFDAAIKVVL 160
G+ AY+ECS++ NV AVF A +V L
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+NFS + L LWDTAGQE+Y+RLRPLSY +DV +L F++ ++ S++
Sbjct: 51 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 136
N++ KW PE++HY +LVG K+DLR D G+ +T +G++L + +G A
Sbjct: 111 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 162
Query: 137 YIECSSKTQQNVKAVFDAAIKVVL 160
YIE SS + + VF+ ++ +
Sbjct: 163 YIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
YVPTVF+NFS + L LWDTAGQE+Y+RLRPLSY +DV +L F++ ++ S++
Sbjct: 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
Query: 77 NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 136
N++ KW PE++HY +LVG K+DLR D G+ +T +G++L + +G A
Sbjct: 112 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 163
Query: 137 YIECSSKTQQNVKAVFDAAIKVVL 160
YIE SS + + VF+ ++ +
Sbjct: 164 YIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
++YVPTVF+N++A+ +D + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 50 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET 109
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++V KKW E++ + P ++LVG K DLR D ++ + P++ QG + K I
Sbjct: 110 LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 169
Query: 133 GSPAYIECSS-KTQQNVKAVFDAA 155
G+ YIECS+ +++ +V+ +F A
Sbjct: 170 GAATYIECSALQSENSVRDIFHVA 193
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
++YVPTVF+N++A+ +D + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 34 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET 93
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++V KKW E++ + P ++LVG K DLR D ++ + P++ QG + K I
Sbjct: 94 LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153
Query: 133 GSPAYIECSS-KTQQNVKAVFDAA 155
G+ YIECS+ +++ +V+ +F A
Sbjct: 154 GAATYIECSALQSENSVRDIFHVA 177
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
++YVPTVF+N++A+ +D + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 55 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET 114
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++V KKW E++ + P ++LVG K DLR D ++ + P++ QG + K I
Sbjct: 115 LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174
Query: 133 GSPAYIECSS-KTQQNVKAVFDAA 155
G+ YIECS+ +++ +V+ +F A
Sbjct: 175 GAATYIECSALQSENSVRDIFHVA 198
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ YVPTVF+N++A + + V L LWDT+G Y+ +RPL Y +D +L F + +
Sbjct: 38 ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET 97
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++ KKW E+ Y P ++L+G K DLR D ++ H PI+ QG + K +
Sbjct: 98 VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 157
Query: 133 GSPAYIECSSKT-QQNVKAVFDAAIKVVL 160
G+ Y+E S+ T ++++ ++F A + L
Sbjct: 158 GAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ YVPTVF+N++A + + V L LWDT+G Y+ +RPL Y +D +L F + +
Sbjct: 54 ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET 113
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++ KKW E+ Y P ++L+G K DLR D ++ H PI+ QG + K +
Sbjct: 114 VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173
Query: 133 GSPAYIECSSKT-QQNVKAVFDAAIKVVL 160
G+ Y+E S+ T ++++ ++F A + L
Sbjct: 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ YVPTVF+N++A + + V L LWDT+G Y+ +RPL Y +D +L F + +
Sbjct: 37 ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET 96
Query: 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQGEELRKLI 132
++ KKW E+ Y P ++L+G K DLR D ++ H PI+ QG + K +
Sbjct: 97 VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 156
Query: 133 GSPAYIECSSKT-QQNVKAVFDAAIKVVL 160
G+ Y+E S+ T ++++ ++F A + L
Sbjct: 157 GAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
FS + V+ +TV +WDTAGQE Y+ L P+ YRGA I+ F + ++AS+E AKKW+
Sbjct: 50 FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQ 108
Query: 85 ELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL+ P + + L G K DL D ++ TA+ + ++E S+K
Sbjct: 109 ELQAQGNPNMVMALAGNKSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAK 157
Query: 144 TQQNVKAVF 152
T NVK +F
Sbjct: 158 TATNVKEIF 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 17/151 (11%)
Query: 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
I +I N+ + K Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F
Sbjct: 21 IQLIQNHFVDK--YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 64 ILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121
+ F++ + S+E++ ++ I ++ + VP++LVG K DL A +
Sbjct: 79 LCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVE 126
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152
+ Q ++L + G P YIE S+KT+Q V+ F
Sbjct: 127 SRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 17/151 (11%)
Query: 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
I +I N+ + K Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F
Sbjct: 21 IQLIQNHFVEK--YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 64 ILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121
+ F++ + S+E++ ++ I ++ + VP++LVG K DL A +
Sbjct: 79 LCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVE 126
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152
+ Q ++L + G P YIE S+KT+Q V+ F
Sbjct: 127 SRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG V L +WDTAGQE + LR YRGAD +L FS+ + S+EN+ W E
Sbjct: 48 DLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFI 106
Query: 88 HYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
+YA P +++G K+D ++D+Q +TT + + G Y+E S+
Sbjct: 107 YYADVKDPEHFPFVVLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSA 155
Query: 143 KTQQNVKAVFDAAIKVVL 160
K NV F+ A++ VL
Sbjct: 156 KDDTNVTVAFEEAVRQVL 173
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 36 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 96 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 143
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 144 IP-YIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 36 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 96 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 143
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 144 IP-YIETSAKTRQGVEDAF 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 38 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 97
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 98 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 145
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 146 IP-YIETSAKTRQGVEDAF 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG + DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 17/151 (11%)
Query: 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
I +I N+ + + D PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F
Sbjct: 21 IQLIQNHFVDEFD--PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 64 ILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121
+ F++ + S+E++ ++ I ++ + VP++LVG K DL A +
Sbjct: 79 LCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVE 126
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152
+ Q ++L + G P YIE S+KT+Q V+ F
Sbjct: 127 SRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DY PT+ D+++ V+D L + DTAGQE++ +R R + F+L FS+ + S+
Sbjct: 33 DYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSF 92
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
E + K LR P+IL+G K DL DH V T +G++L + +
Sbjct: 93 EEIYKFQRQILRVKDRDEFPMILIGNKADL--------DHQRQV--TQEEGQQLARQL-K 141
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
Y+E S+K + NV F ++V+
Sbjct: 142 VTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG+E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ +++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 17/151 (11%)
Query: 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 63
I +I N+ + + D PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F
Sbjct: 21 IQLIQNHFVDECD--PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 64 ILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121
+ F++ + S+E++ ++ I ++ + VP++LVG K DL A +
Sbjct: 79 LCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AARTVE 126
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152
+ Q ++L + G P YIE S+KT+Q V+ F
Sbjct: 127 SRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 37 EYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 96
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 97 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 144
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 145 IP-YIETSAKTRQGVEDAF 162
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AGRTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG V + +WDTAGQE + LR YRG+D +L FS+ S++N++ W E
Sbjct: 52 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFI 110
Query: 88 HYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
+YA P +++G K D+++ + ++T + + K G Y E S+
Sbjct: 111 YYADVKEPESFPFVILGNKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSA 159
Query: 143 KTQQNVKAVFDAAIKVVL 160
K NV A F+ A++ +L
Sbjct: 160 KDSTNVAAAFEEAVRRIL 177
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAG EDY +R +R + F+L FS+ S
Sbjct: 30 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 89
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA--QGEELRK 130
+ A ++ I ++ +P+++VG K DL + +Q VP+ A + EE
Sbjct: 90 FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARSKAEEW-- 139
Query: 131 LIGSPAYIECSSKTQQNVKAVF 152
Y+E S+KT+ NV VF
Sbjct: 140 ---GVQYVETSAKTRANVDKVF 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAG EDY +R +R + F+L FS+ S
Sbjct: 34 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 93
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA--QGEELRK 130
+ A ++ I ++ +P+++VG K DL + +Q VP+ A + EE
Sbjct: 94 FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARSKAEEW-- 143
Query: 131 LIGSPAYIECSSKTQQNVKAVF 152
Y+E S+KT+ NV VF
Sbjct: 144 ---GVQYVETSAKTRANVDKVF 162
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 49 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108
Query: 76 E--NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
N+ ++ I ++ + VP++LVG K DL P + T Q EL K G
Sbjct: 109 ADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT-VDTKQAHELAKSYG 156
Query: 134 SPAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+KT+Q V+ F ++ +
Sbjct: 157 IP-FIETSAKTRQGVEDAFYTLVREI 181
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL P + T Q ++L + G
Sbjct: 92 EDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARSYG 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
P +IE S+KT+Q V F
Sbjct: 140 IP-FIETSAKTRQGVDDAF 157
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+ + +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL P + T Q ++L + G
Sbjct: 92 EDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARSYG 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
P +IE S+KT+Q V F
Sbjct: 140 IP-FIETSAKTRQGVDDAF 157
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL P + T Q ++L + G
Sbjct: 92 EDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARSYG 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
P +IE S+KT+Q V F
Sbjct: 140 IP-FIETSAKTRQGVDDAF 157
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 31 EYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 91 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 138
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 139 IP-YIETSAKTRQGVEDAF 156
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG V + +WDTAGQE + LR YRG+D +L FS+ S++N++ W E
Sbjct: 48 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFI 106
Query: 88 HYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
+YA P +++G K+D+ + + ++T + + + G Y E S+
Sbjct: 107 YYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSA 155
Query: 143 KTQQNVKAVFDAAIKVVL 160
K NV A F+ A++ VL
Sbjct: 156 KDATNVAAAFEEAVRRVL 173
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAGQEDY +R +R + F+ FS+ S
Sbjct: 45 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 104
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+ A ++ I ++ VP +LVG K DL D +Q V + A+ R
Sbjct: 105 FAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQ--------VSVEEAKN---RAEQ 152
Query: 133 GSPAYIECSSKTQQNVKAVF 152
+ Y+E S+KT+ NV VF
Sbjct: 153 WNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAGQEDY +R +R + F+ FS+ S
Sbjct: 33 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+ A ++ I ++ VP +LVG K DL D +Q V + A+ R
Sbjct: 93 FAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQ--------VSVEEAKN---RAEQ 140
Query: 133 GSPAYIECSSKTQQNVKAVF 152
+ Y+E S+KT+ NV VF
Sbjct: 141 WNVNYVETSAKTRANVDKVF 160
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAGQEDY +R +R + F+ FS+ S
Sbjct: 41 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 100
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+ A ++ I ++ VP +LVG K DL D +Q V + A+ R
Sbjct: 101 FAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQ--------VSVEEAKN---RAEQ 148
Query: 133 GSPAYIECSSKTQQNVKAVF 152
+ Y+E S+KT+ NV VF
Sbjct: 149 WNVNYVETSAKTRANVDKVF 168
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG V + +WDTAGQE + LR YRG+D +L FS+ S++N++ W E
Sbjct: 50 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFI 108
Query: 88 HYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
+YA P +++G K+D+ + + ++T + + + G Y E S+
Sbjct: 109 YYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSA 157
Query: 143 KTQQNVKAVFDAAIKVVL 160
K NV A F+ A++ VL
Sbjct: 158 KDATNVAAAFEEAVRRVL 175
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 36 EYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL A + + Q ++L + G
Sbjct: 96 EDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYG 143
Query: 134 SPAYIECSSKTQQNVKAVF 152
P YIE S+KT+Q V+ F
Sbjct: 144 IP-YIETSAKTRQGVEDAF 161
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R + F+ F++ + S+
Sbjct: 32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL P + T Q ++L + G
Sbjct: 92 EDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARSYG 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
P +IE S+KT+Q V F
Sbjct: 140 IP-FIETSAKTRQGVDDAF 157
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAGQE Y R+ YRGA +L + + +YENV ++W+ ELR
Sbjct: 46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 104
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I+LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 105 DHADSNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNNL---SFIETSALDST 153
Query: 147 NVKAVF 152
NV+ F
Sbjct: 154 NVEEAF 159
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAGQEDY +R +R + F+ FS+ S
Sbjct: 31 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 90
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+ A ++ I ++ VP +LVG K DL D +Q V + A+ R
Sbjct: 91 FAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQ--------VSVEEAKN---RADQ 138
Query: 133 GSPAYIECSSKTQQNVKAVF 152
+ Y+E S+KT+ NV VF
Sbjct: 139 WNVNYVETSAKTRANVDKVF 158
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 45 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 103
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 152
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 153 TSMNVNEIFMAIAK 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 15/139 (10%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R + F+ F++ + S+
Sbjct: 49 EYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 108
Query: 76 ENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E++ ++ I ++ + VP++LVG K DL P + T Q ++L + G
Sbjct: 109 EDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARSYG 156
Query: 134 SPAYIECSSKTQQNVKAVF 152
P +IE S+KT+Q V F
Sbjct: 157 IP-FIETSAKTRQGVDDAF 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ TV +F V+ VDG V L +WDTAGQE + + YR A +L + + +KAS+
Sbjct: 40 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99
Query: 76 ENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+N+ + W+ E+ YA V ++L+G K+D ++ + GE+L K G
Sbjct: 100 DNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHER----------VVKREDGEKLAKEYGL 148
Query: 135 PAYIECSSKTQQNVKAVFDAAIK 157
P ++E S+KT NV F A K
Sbjct: 149 P-FMETSAKTGLNVDLAFTAIAK 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 44 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 102
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 151
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 152 TSMNVNEIFMAIAK 165
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAGQE Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 61 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 119
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I+LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 120 DHADSNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 168
Query: 147 NVKAVF 152
NV+A F
Sbjct: 169 NVEAAF 174
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAGQE Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 70 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I+LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 177
Query: 147 NVKAVF 152
NV+A F
Sbjct: 178 NVEAAF 183
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 36 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 95
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
SY NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 96 SYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSL 144
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 145 GIP-FLETSAKNATNVEQAF 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 36 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 95
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
SY NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 96 SYANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSL 144
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 145 GIP-FLETSAKNATNVEQAF 163
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + + ++ AK W+
Sbjct: 43 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVK 101
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + AV AQ S ++E S+K
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADD---NSLLFMETSAK 150
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 151 TAMNVNEIFMAIAK 164
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 26 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 85
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 86 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 134
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 135 GIP-FLETSAKNATNVEQSF 153
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + + ++ AK W+
Sbjct: 41 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVK 99
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + AV AQ S ++E S+K
Sbjct: 100 ELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADD---NSLLFMETSAK 148
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 149 TAMNVNEIFMAIAK 162
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+DY PT D++ VV+DG V + + DTAG EDY +R +R + F+ FS+ S
Sbjct: 33 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+ A ++ I ++ VP +LVG K DL D +Q V + A+ R
Sbjct: 93 FAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQ--------VSVEEAKN---RAEQ 140
Query: 133 GSPAYIECSSKTQQNVKAVF 152
+ Y+E S+KT+ NV VF
Sbjct: 141 WNVNYVETSAKTRANVDKVF 160
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 33 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 93 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 141
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 142 GIP-FLETSAKNATNVEQSF 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAGQE Y+ L P YRGA I+ + + ++ S+ AK W+
Sbjct: 45 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVK 103
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S + E S+K
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFXETSAK 152
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 153 TSXNVNEIFXAIAK 166
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 33 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 93 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 141
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 142 GIP-FLETSAKNATNVEQSF 160
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 43 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 102
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 103 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 151
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 152 GIP-FLETSAKNATNVEQSF 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 52 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 111
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 112 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 160
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 161 GIP-FLETSAKNATNVEQSF 179
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 43 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 102
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 103 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 151
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 152 GIP-FLETSAKNATNVEQSF 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 60 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 119
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 120 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSL 168
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 169 GIP-FLETSAKNATNVEQSF 187
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 35 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 94
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ NV K+W+ E+ YA V +LVG K DL K V TTA+ E +
Sbjct: 95 SFNNV-KQWLQEIDRYASENVNKLLVGIKCDLTTKK--------VVDYTTAK--EFADSL 143
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G P ++E S+K NV+ F
Sbjct: 144 GIP-FLETSAKNATNVEQSF 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ TV L LWDTAGQE + L P R + V ++ + + + S++ + KW
Sbjct: 38 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KW 96
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q IT +GE+ K + S +IE S
Sbjct: 97 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------ITIEEGEQRAKEL-SVMFIETS 145
Query: 142 SKTQQNVKAVF 152
+KT NVK +F
Sbjct: 146 AKTGYNVKQLF 156
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAG E Y+ L P+ YRGA I+ + + ++ S+ AK W+
Sbjct: 43 LTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVK 101
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + AV AQ S ++E S+K
Sbjct: 102 ELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADD---NSLLFMETSAK 150
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 151 TSMNVNEIFMAIAK 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ +V +D +TV +WDTAGQE Y+ L P+ YRGA I+ + + ++ ++ AK W+
Sbjct: 46 LTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVK 104
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + + + A S ++E S+K
Sbjct: 105 ELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDN-----------SLLFMETSAK 153
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 154 TAMNVNDLFLAIAK 167
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 49 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 107
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I+LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 108 DHADSNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 156
Query: 147 NVKAVF 152
NV+A F
Sbjct: 157 NVEAAF 162
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 70 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I+LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 177
Query: 147 NVKAVF 152
NV+A F
Sbjct: 178 NVEAAF 183
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 52 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 110
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 111 DHADSNIVIXLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 159
Query: 147 NVKAVF 152
NV+A F
Sbjct: 160 NVEAAF 165
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F V ++G V L LWDTAGQE + + YRGA IL + + + ++
Sbjct: 49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 108
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
N+ K+W + +A ++LVG K D+ +T QGE L K +G
Sbjct: 109 TNI-KQWFKTVNEHANDEAQLLLVGNKSDME-----------TRVVTADQGEALAKELGI 156
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+K NV +F K++
Sbjct: 157 P-FIESSAKNDDNVNEIFFTLAKLI 180
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
++ VDG T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ ELR
Sbjct: 46 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 104
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
+A + I LVG K DLR H AVP A+ + + ++IE S+
Sbjct: 105 DHADSNIVIXLVGNKSDLR--------HLRAVPTDEARAFAEKNGL---SFIETSALDST 153
Query: 147 NVKAVF 152
NV+A F
Sbjct: 154 NVEAAF 159
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F V ++G V L LWDTAGQE + + YRGA IL + + + ++
Sbjct: 36 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 95
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
N+ K+W + +A ++LVG K D+ +T QGE L K +G
Sbjct: 96 TNI-KQWFKTVNEHANDEAQLLLVGNKSDME-----------TRVVTADQGEALAKELGI 143
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+K NV +F K++
Sbjct: 144 P-FIESSAKNDDNVNEIFFTLAKLI 167
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
Y+ T+ +F + ++ TV L +WDTAGQE + + YRGA I+ + + + S+
Sbjct: 38 YISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSF 97
Query: 76 ENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+NV K+WI E+ YA V +LVG K DL + +T+ +G EL G
Sbjct: 98 DNV-KQWIQEIDRYAMENVNKLLVGNKCDLVSKR----------VVTSDEGRELADSHG- 145
Query: 135 PAYIECSSKTQQNVKAVF 152
+IE S+K NV+ F
Sbjct: 146 IKFIETSAKNAYNVEQAF 163
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 27/171 (15%)
Query: 4 IYIICNYSLGKQDYVPTVFDN-----FSANVVVD---------GSTVNLGLWDTAGQEDY 49
I II N S+GK ++ D+ F + V +D + L +WDTAGQE Y
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 50 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 108
+ YRGA FIL + + ++ S+ N + W +++ Y+ ++LVG K D+ D++
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159
+++ +G +L +G + E S+K NVK F+ + V+
Sbjct: 127 ----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 166
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F V ++G V L LWDTAGQE + + YRGA IL + + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTF 91
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
N+ K+W + +A ++LVG K D +T QGE L K +G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+K NV +F K++
Sbjct: 140 P-FIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F V ++G V L +WDTAGQE + + YRGA IL + + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTF 91
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
N+ K+W + +A ++LVG K D+ +T QGE L K +G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDME-----------TRVVTADQGEALAKELGI 139
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+K NV +F K++
Sbjct: 140 P-FIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 25 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84
+ V +D +TV +WDTAG E Y+ L P+ YRGA I+ + + + ++ AK W+
Sbjct: 43 LTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVK 101
Query: 85 EL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143
EL R +P + I L G K DL + AV AQ S ++E S+K
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADD---NSLLFMETSAK 150
Query: 144 TQQNVKAVFDAAIK 157
T NV +F A K
Sbjct: 151 TAMNVNEIFMAIAK 164
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
V + G + L +WDTAGQE +N + YR A IL + + K +++++ KW+ +
Sbjct: 67 TVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMID 125
Query: 88 HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
YA ++LVG KLD D++ IT QGE+ + I + E S+K
Sbjct: 126 KYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNF 175
Query: 147 NVKAVF 152
NV +F
Sbjct: 176 NVDEIF 181
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F V ++G V L +WDTAGQE + + YRGA IL + + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTF 91
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
N+ K+W + +A ++LVG K D +T QGE L K +G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
P +IE S+K NV +F K++
Sbjct: 140 P-FIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DY PT+ D+++ VDG L + DTAGQE++ +R R F+L F++ + S+
Sbjct: 37 DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
V K + LR P++LVG K DL +Q VP + A +
Sbjct: 97 NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VPRSEASAFGASHHV-- 146
Query: 135 PAYIECSSKTQQNVKAVFDAAIKVV 159
AY E S+K + NV F+ ++ V
Sbjct: 147 -AYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGV 93
V+L LWDTAGQE + L +R A F+L F L S+ S+ NV + W+ +L+ Y
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 142
Query: 94 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153
I+L+G K DL D ++ + Q EL G P Y E S+ T QNV+ +
Sbjct: 143 DIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAVE 191
Query: 154 AAIKVVL 160
+ +++
Sbjct: 192 TLLDLIM 198
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
KQD T+ F + VV V G TV L +WDTAGQE + + YRGA +L + + S+
Sbjct: 51 KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 110
Query: 73 ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQF-FIDHPGAVPITTAQGEELRK 130
+Y ++A W+ + R A P + +IL G K DL +++ F++ AQ EL
Sbjct: 111 ETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS-----RFAQENEL-- 162
Query: 131 LIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
++E S+ T +NV+ F + +L
Sbjct: 163 -----MFLETSALTGENVEEAFLKCARTIL 187
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ TV L LWDTAGQE + L P R + V ++ + + + S+ + KW
Sbjct: 50 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KW 108
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q ++T +GE K + + +IE S
Sbjct: 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKEL-NVMFIETS 157
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 158 AKAGYNVKQLF 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ Y PT+ D++ V VD L + DTAG E + +R L + F L +S+ ++++
Sbjct: 30 EKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST 89
Query: 75 YENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
+ ++ LR VP+ILVG K DL D++ + QG+ L +
Sbjct: 90 FNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWN 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K++ NV +F
Sbjct: 140 NCAFLESSAKSKINVNEIF 158
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ Y PT+ D++ V VD L + DTAG E + +R L + F L +S+ ++++
Sbjct: 32 EKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST 91
Query: 75 YENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
+ ++ LR VP+ILVG K DL D++ + QG+ L +
Sbjct: 92 FNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWN 141
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K++ NV +F
Sbjct: 142 NCAFLESSAKSKINVNEIF 160
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 16 DYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
DY+ T+ +F V +DG TV L +WDTAGQE + + YRG+ I+ + + + S
Sbjct: 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 75 YENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 108
+ V K W+ E+ YA + +LVG K DL+D +
Sbjct: 96 FNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 16 DYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
DY+ T+ +F V +DG TV L +WDTAGQE + + YRG+ I+ + + + S
Sbjct: 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 75 YENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 108
+ V K W+ E+ YA + +LVG K DL+D +
Sbjct: 96 FNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ V VD L + DTAG E + +R L + F L +S+ +++++
Sbjct: 31 EYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
++ LR VP+ILVG K DL D++ + QG+ L + +
Sbjct: 91 NDLQDLREQILRVKDTEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWCN 140
Query: 135 PAYIECSSKTQQNVKAVF 152
A++E S+K++ NV +F
Sbjct: 141 CAFLESSAKSKINVNEIF 158
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ Y PT+ D++ V VD L + DTAG E + +R L + F L +S+ ++++
Sbjct: 30 EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST 89
Query: 75 YENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
+ ++ LR VP+ILVG K DL D++ + QG+ L +
Sbjct: 90 FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWC 139
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K++ NV +F
Sbjct: 140 NCAFLESSAKSKINVNEIF 158
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
DY+ T+ +F V +DG TV L +WDTAGQE + + YRG+ I+ + + +
Sbjct: 48 NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 107
Query: 74 SYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 108
S+ V K W+ E+ YA + +LVG K DL+D +
Sbjct: 108 SFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 5 YIICNYSLGKQDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQEDYNRLRPLSYRGADV 62
Y+ YS Q Y T+ +F + V VDG V + +WDTAGQE + L YRGAD
Sbjct: 28 YVNDKYS---QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84
Query: 63 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGA 117
+L + + + +S+EN+ K W E +A P +++G K+D + K+
Sbjct: 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI------- 136
Query: 118 VPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
++ +EL K +G S+K NV F+ + L
Sbjct: 137 --VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGV 93
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +L+ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 128
Query: 94 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153
I+L+G K DL D ++ + Q EL + G P Y E S+ T QNV+ +
Sbjct: 129 DIVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVE 177
Query: 154 AAIKVVL 160
+ +++
Sbjct: 178 TLLDLIM 184
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 6 IICNYSLGKQDY--VPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADV 62
I+C + D+ PT+ +F V G+ ++ L WDTAGQE ++ L P+ YRG+
Sbjct: 39 IVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98
Query: 63 FILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121
++ + + + S+ + KKW+ EL+ + P + + + G K DL D ++ VP+
Sbjct: 99 AVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLK 149
Query: 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 154
A+ E + IG+ +E S+K N++ +F
Sbjct: 150 DAK--EYAESIGA-IVVETSAKNAINIEELFQG 179
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 4 IYIICNYSLGKQDYVPTVFDN-----FSANVVVD---------GSTVNLGLWDTAGQEDY 49
+ +I N S+GK ++ D+ F + V +D + L +WDTAGQE Y
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 50 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 108
+ YRGA F+L + + ++ S+ V + W +++ Y+ +ILVG K DL D++
Sbjct: 85 RTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159
VP G L +G + E S+K NVK VF+ + V+
Sbjct: 144 --------VVP--AEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVI 183
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 17 YVPTVFDNFSANVVV------DGST-----VNLGLWDTAGQEDYNRLRPLSYRGADVFIL 65
++ TV +F VV DG++ V+L LWDTAG E + L +R A F+L
Sbjct: 40 FITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
Query: 66 AFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA 123
F L S+ S+ NV + W+ +L+ Y I+L+G K DL D ++ +
Sbjct: 100 MFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNER 148
Query: 124 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
Q EL + G P Y E S+ T QNV+ + + +++
Sbjct: 149 QARELAEKYGIP-YFETSAATGQNVEKSVETLLDLIM 184
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 15 QDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+ Y+ T+ +F + +DG T+ L +WDTAGQE + + YRGA I+ + + +
Sbjct: 25 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 84
Query: 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDL 104
S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 85 SFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ TV L LWDTAGQE + L P R + V ++ + + + S++ KW
Sbjct: 37 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KW 95
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q ++ +GE K + + +IE S
Sbjct: 96 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKEL-NVMFIETS 144
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 145 AKAGYNVKQLF 155
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 4 IYIICNYSLGKQDYVPTVFDN-----FSANVVVD---------GSTVNLGLWDTAGQEDY 49
I II N S+GK ++ D+ F + V +D + L +WDTAG E Y
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY 70
Query: 50 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 108
+ YRGA FIL + + ++ S+ N + W +++ Y+ ++LVG K D D++
Sbjct: 71 RTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159
+++ +G +L +G + E S+K NVK F+ + V+
Sbjct: 130 ----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 169
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DY PT+ D++ + +D L + DTAGQE+++ +R R D F++ +S+ KAS+
Sbjct: 41 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 100
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
E+V + LR P+ILV K+DL ++ +T QG+E+
Sbjct: 101 EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI 150
Query: 135 PAYIECSSKTQQ-NVKAVFDAAIKVV 159
P YIE S+K NV F ++V+
Sbjct: 151 P-YIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
DY PT+ D++ + +D L + DTAGQE+++ +R R D F++ +S+ KAS+
Sbjct: 46 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
E+V + LR P+ILV K+DL ++ +T QG+E+
Sbjct: 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI 155
Query: 135 PAYIECSSKTQQ-NVKAVFDAAIKVV 159
P YIE S+K NV F ++V+
Sbjct: 156 P-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 27/171 (15%)
Query: 4 IYIICNYSLGKQDYVPTVFDN-----FSANVVVD---------GSTVNLGLWDTAGQEDY 49
+ II N S+GK ++ D+ F + V +D V L +WDTAGQE Y
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 50 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 108
+ YRGA FIL + + ++ S+ N + W +++ Y+ +ILVG K D+ +++
Sbjct: 86 RTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144
Query: 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159
VP T +G+ L + +G + E S+K +V+ F+ + +
Sbjct: 145 --------VVP--TEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F + + + G VNL +WDTAGQE ++ L P+ YR ++ IL + + + S+
Sbjct: 35 HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 94
Query: 76 ENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+ V K W+ ELR + + +VG K+DL ++ ++ + E + +G+
Sbjct: 95 QKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA 143
Query: 135 PAYIECSSKTQQNVKAVF 152
Y S+K + ++ +F
Sbjct: 144 KHY-HTSAKQNKGIEELF 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F + +DG + L +WDTAGQE + + YRGA +L + + ++ S+
Sbjct: 35 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+N+ + WI + +A V +++G K D+ D +Q ++ +GE+L L
Sbjct: 95 DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKL-ALDYG 142
Query: 135 PAYIECSSKTQQNVKAVF 152
++E S+K NV+ F
Sbjct: 143 IKFMETSAKANINVENAF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F + + + G VNL +WDTAGQE ++ L P+ YR ++ IL + + + S+
Sbjct: 35 HITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 94
Query: 76 ENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+ V K W+ ELR + + +VG K+DL ++ ++ + E + +G+
Sbjct: 95 QKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA 143
Query: 135 PAYIECSSKTQQNVKAVF 152
Y S+K + ++ +F
Sbjct: 144 KHY-HTSAKQNKGIEELF 160
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
Y+ T+ +F V ++G V L +WDTAGQE + + YRG I+ + + S S+
Sbjct: 38 YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESF 97
Query: 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
NV K+W+ E+ V ILVG K D D ++ ++ A G +L
Sbjct: 98 VNV-KRWLHEINQNCDDVCRILVGNKND--DPERKVVETEDAYKFAGQMGIQL------- 147
Query: 136 AYIECSSKTQQNVKAVFDAAIKVVL 160
E S+K NV+ +F+ ++VL
Sbjct: 148 --FETSAKENVNVEEMFNCITELVL 170
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88
V ++G V L +WDTAGQE + + YR A+ IL + + + S+ + +W+ E+
Sbjct: 68 VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQ 126
Query: 89 YAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
YA V +LVG K+DL + ++ + A + AQ Y+E S+K N
Sbjct: 127 YASNKVITVLVGNKIDLAERRE--VSQQRAEEFSEAQ---------DMYYLETSAKESDN 175
Query: 148 VKAVF-DAAIKVV 159
V+ +F D A +++
Sbjct: 176 VEKLFLDLACRLI 188
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F + +DG + L +WDTAGQE + + YRGA +L + + ++ S+
Sbjct: 37 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 96
Query: 76 ENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+N+ + WI + +A V +++G K D+ D +Q ++ +GE+L L
Sbjct: 97 DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKL-ALDYG 144
Query: 135 PAYIECSSKTQQNVKAVF 152
++E S+K NV+ F
Sbjct: 145 IKFMETSAKANINVENAF 162
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
++ T+ +F + + + G VNL +WDTAGQE ++ L P+ YR ++ IL + + + S+
Sbjct: 49 HITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 108
Query: 76 ENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+ V K W+ ELR + + +VG K+DL ++ ++ + E + +G+
Sbjct: 109 QKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA 157
Query: 135 PAYIECSSKTQQNVKAVF 152
Y S+K + ++ +F
Sbjct: 158 KHY-HTSAKQNKGIEELF 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGV 93
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 94 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153
I+L+G K DL D ++ + Q EL + G P Y E S+ T QNV+ +
Sbjct: 129 DIVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVE 177
Query: 154 AAIKVV 159
+ ++
Sbjct: 178 TLLDLI 183
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGV 93
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 94 PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153
I+L+G K DL D ++ + Q EL + G P Y E S+ T QNV+ +
Sbjct: 129 DIVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVE 177
Query: 154 AAIKVV 159
+ ++
Sbjct: 178 TLLDLI 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ + +D L + DTAGQE+++ +R R D F++ +S+ KAS+
Sbjct: 46 EYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
E+V + LR P+ILV K+DL ++ +T QG+E+
Sbjct: 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI 155
Query: 135 PAYIECSSKTQQ-NVKAVFDAAIKVV 159
P YIE S+K NV F ++V+
Sbjct: 156 P-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 14 KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
++ Y+PTV D + + D S L + DT G + ++ LS FIL +S+ S+
Sbjct: 29 RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ 88
Query: 74 SYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 131
S E + + I E++ +PI+LVG K D ++ + +++ E L +
Sbjct: 89 SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALAR- 137
Query: 132 IGSPAYIECSSKTQQNVKAVFDAAIKV 158
A++E S+K NVK +F + +
Sbjct: 138 TWKCAFMETSAKLNHNVKELFQELLNL 164
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 15 QDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
++ PT+ F + V ++ TV +WDTAGQE + L P YR A ++ + +
Sbjct: 30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ 89
Query: 74 SYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
S+ A+ W+ EL A + I LVG K+D + G + +GE+L +
Sbjct: 90 SFIK-ARHWVKELHEQASKDIIIALVGNKIDX-------LQEGGERKVAREEGEKLAEEK 141
Query: 133 GSPAYIECSSKTQQNVKAVF 152
G + E S+KT +NV VF
Sbjct: 142 G-LLFFETSAKTGENVNDVF 160
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ D++ + +D L + DTAGQE+++ +R R D F++ +S+ KAS+
Sbjct: 46 EYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 76 ENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
E+V + LR P+ILV K+DL ++ +T QG+E+
Sbjct: 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI 155
Query: 135 PAYIECSSKTQQ-NVKAVFDAAIKVV 159
P YIE S+K NV F ++V+
Sbjct: 156 P-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 15 QDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
+DY T+ D + V+ V L LWDTAGQE+++ + YRGA +L FS +
Sbjct: 32 KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE 91
Query: 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107
S+E ++ W ++ +P LV K+DL DD
Sbjct: 92 SFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ T+ L LWDTAGQE + L P R + ++ + + + S++ KW
Sbjct: 42 DFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KW 100
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q I+ +GE K + + +IE S
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIE----------EGERKAKEL-NVMFIETS 149
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 150 AKAGYNVKQLF 160
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ TV L LWDTAG E + L P R + V ++ + + + S++ KW
Sbjct: 42 DFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KW 100
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q I+ +GE K + + +IE S
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIE----------EGERKAKEL-NVMFIETS 149
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 150 AKAGYNVKQLF 160
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76
Y+PT+ D + + D S L + DT G + ++ LS FIL FS+ SK S E
Sbjct: 37 YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLE 96
Query: 77 NVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134
+ K I +++ +P++LVG K D+ Q +D A + +E +
Sbjct: 97 ELGPIYKLIVQIKGSVEDIPVMLVGNKC---DETQREVDTREAQAV----AQEWK----- 144
Query: 135 PAYIECSSKTQQNVKAVF 152
A++E S+K NVK +F
Sbjct: 145 CAFMETSAKMNYNVKELF 162
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 40 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILV 98
+WDTAGQE Y + YRGA +L + + K S+EN+ +KW+ ELR A + I+LV
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLV 119
Query: 99 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152
G K DL+ + I+ A A+ E+L A+IE S+ NV+ F
Sbjct: 120 GNKSDLKHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ TV L LWDTAG E + L P R + V ++ + + + S++ KW
Sbjct: 52 DFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KW 110
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q I+ +GE K + + +IE S
Sbjct: 111 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIE----------EGERKAKEL-NVMFIETS 159
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 160 AKAGYNVKQLF 170
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 61
F+ +C +++ T+ +F ++VDG L LWDTAGQE + + +R AD
Sbjct: 44 FLMRLCKNEF-RENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102
Query: 62 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPI 120
+L + + + S+ N+ ++W+ + A VPI+LVG K D+RD G +
Sbjct: 103 GVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCV 157
Query: 121 TTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKV 158
GE+L G+ + E S+K N V+AV A +V
Sbjct: 158 PGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREV 195
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+ Y PT+ D + + VD S L + DTAG E + +R L + FIL +SL+++ S
Sbjct: 30 EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS 89
Query: 75 YENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
++++ + I ++ Y VP+ILVG K+DL +++++G L +
Sbjct: 90 FQDIKPMRDQIIRVKRYEK-VPVILVGNKVDLE----------SEREVSSSEGRALAEEW 138
Query: 133 GSPAYIECSSKTQQNVKAVFDAAIK 157
G P ++E S+K++ V +F ++
Sbjct: 139 GCP-FMETSAKSKTMVDELFAEIVR 162
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
K D T+ F + ++ V G V L +WDTAGQE + + YRGA +L + + S+
Sbjct: 36 KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 95
Query: 73 ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQF-FIDHPGAVPITTAQGEELRK 130
+Y N W+ + R A + IIL G K DL D++ F++ AQ EL
Sbjct: 96 ETY-NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS-----RFAQENEL-- 147
Query: 131 LIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
++E S+ T +NV+ F + +L
Sbjct: 148 -----MFLETSALTGENVEEAFVQCARKIL 172
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR- 87
+ +DG + L +WDTAGQE + + YRGA +L + + + ++ ++ W+ + R
Sbjct: 52 ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQ 110
Query: 88 HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
H + I+L+G K DL ++ + +GE + G ++E S+KT N
Sbjct: 111 HSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASN 159
Query: 148 VKAVF 152
V+ F
Sbjct: 160 VEEAF 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 20 TVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 78
T+ F A +V +DG + L +WDTAGQE + + YRGA +L + + + ++ ++
Sbjct: 53 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 112
Query: 79 AKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137
W+ + R H + + I+L+G K DL + + +GE + G +
Sbjct: 113 T-SWLEDARQHSSSNMVIMLIGNKSDLESRR----------DVKREEGEAFAREHG-LIF 160
Query: 138 IECSSKTQQNVKAVF 152
+E S+KT NV+ F
Sbjct: 161 METSAKTACNVEEAF 175
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88
+ VDG+ L +WDTAGQE + L P YRGA IL + + + ++ + W+ EL
Sbjct: 57 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELET 115
Query: 89 YAPGVPII--LVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 146
Y I+ LVG K+D +++++ +D + S +IE S+KT
Sbjct: 116 YCTRNDIVNXLVGNKID-KENRE--VDRNEGLKFARKH---------SXLFIEASAKTCD 163
Query: 147 NVKAVFDAAIKVVL 160
V+ F+ ++ ++
Sbjct: 164 GVQCAFEELVEKII 177
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH--YA 90
G ++L LWDTAG E + L +R A F+L F L ++ S+ NV + WI +L+ Y+
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYS 125
Query: 91 PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150
I+L G K DL D + + + EL + G P Y E S+ N+
Sbjct: 126 ENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISH 174
Query: 151 VFDAAIKVVL 160
+ + +++
Sbjct: 175 AIEMLLDLIM 184
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA 90
++G + +WDTAGQE Y + YRGA ++ + + +SYEN W+ ELR A
Sbjct: 57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENA 115
Query: 91 -PGVPIILVGTKLDLRDDKQFFIDHPGAVPI----TTAQGEELRKLIGSPAYIECSSKTQ 145
V + L+G K DL H AVP T AQ +L + E S+
Sbjct: 116 DDNVAVGLIGNKSDLA--------HLRAVPTEESKTFAQENQL-------LFTETSALNS 160
Query: 146 QNVKAVFDAAIKVV 159
+NV F+ I +
Sbjct: 161 ENVDKAFEELINTI 174
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88
+ V G + L +WDTAGQE + + YRGA ++ + + +++Y +++ W+ + R+
Sbjct: 57 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARN 115
Query: 89 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
P IIL+G K DL + +T + ++ + G ++E S+KT +N
Sbjct: 116 LTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGEN 164
Query: 148 VKAVFDAAIKVV 159
V+ F A K +
Sbjct: 165 VEDAFLEAAKKI 176
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA 90
+ G V L +WDTAGQE + + YR A+ ILA+ + ++S+ +V WI ++R YA
Sbjct: 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYA 131
Query: 91 -PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149
+ +L+G K DL + ++ ++ A+ + L + IE S+K NV+
Sbjct: 132 GSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVE 181
Query: 150 AVF 152
F
Sbjct: 182 EAF 184
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D S + ++ T+ L LWDTAG E + L P R + ++ + + + S++ KW
Sbjct: 49 DFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KW 107
Query: 83 IPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141
I ++R V I+LVG K DL D +Q I+ +GE K + + +IE S
Sbjct: 108 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIE----------EGERKAKEL-NVMFIETS 156
Query: 142 SKTQQNVKAVF 152
+K NVK +F
Sbjct: 157 AKAGYNVKQLF 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 10 YSLGKQDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 68
Y +Y T+ D S + +D V L LWDTAGQE + L P R + I+ +
Sbjct: 23 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYD 82
Query: 69 LISKASYENVAKKWIPE-LRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 127
+ ++ S+EN KWI + L V I LVG K DL D ++ +T +G +
Sbjct: 83 ITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDLRK----------VTYEEGXQ 131
Query: 128 LRKLIGSPAYIECSSKTQQNVKAVF 152
+ + + E S+K N+K +F
Sbjct: 132 KAQEYNT-XFHETSAKAGHNIKVLF 155
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
K D T+ F + ++ V G V L +WDTAGQE + + YRGA +L + + S+
Sbjct: 37 KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 96
Query: 73 ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQF-FIDHPGAVPITTAQGEELRK 130
+Y N W+ + R A + IIL G K DL D++ F++ AQ EL
Sbjct: 97 ETY-NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS-----RFAQENEL-- 148
Query: 131 LIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160
++E S+ T ++V+ F + +L
Sbjct: 149 -----MFLETSALTGEDVEEAFVQCARKIL 173
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE Y LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
+N++ N+ + +WDTAGQE Y + PL YRGA I+ F IS ++ + AK W
Sbjct: 84 NNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTW 138
Query: 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
+ +L+ + IILV K+ D +F +D AQ L +I+ S+
Sbjct: 139 VNQLK-ISSNYIIILVANKI---DKNKFQVDILEVQKY--AQDNNL-------LFIQTSA 185
Query: 143 KTQQNVKAVF 152
KT N+K +F
Sbjct: 186 KTGTNIKNIF 195
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
++ YVPT+ V + + +WDTAGQE + LR Y A I+ F + S+
Sbjct: 36 EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR 95
Query: 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108
+Y+NV W +L +PI+L G K+D++D K
Sbjct: 96 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 75
+Y PT+ + +D V++ + DTAGQED + R R + F+L + + + S+
Sbjct: 56 EYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSF 114
Query: 76 ENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E V K + E++ V +ILVG K DL +Q ++T +GE+L +
Sbjct: 115 EEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATEL- 162
Query: 134 SPAYIECSSKT-QQNVKAVF 152
+ A+ ECS+ T + N+ +F
Sbjct: 163 ACAFYECSACTGEGNITEIF 182
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 40 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILV 98
+WDTAGQE + L P+ YRG+ I+ + + + ++ + K W+ ELR H P + + +
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIA 116
Query: 99 GTKLDLRDDKQ 109
G K DL D ++
Sbjct: 117 GNKCDLTDVRE 127
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
++ YVPT+ V + + +WDTAGQE + LR Y A I+ F + S+
Sbjct: 36 EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR 95
Query: 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108
+Y+NV W +L +PI+L G K+D++D K
Sbjct: 96 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 15 QDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
D T+ FS V+ G+ V +WDTAG E Y + YRGA +L F L
Sbjct: 37 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ 96
Query: 74 SYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+Y V ++W+ EL +A + ++LVG K DL ++ VP EE R
Sbjct: 97 TYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQARE--------VPT-----EEARMFA 142
Query: 133 GSPA--YIECSSKTQQNVKAVFDAAIKVVL 160
+ ++E S+ NV+ F+ +K +
Sbjct: 143 ENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 52 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 110
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 111 VLCGNKVDIKDRK 123
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 122
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 123 VLCGNKVDIKDRK 135
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 122
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 123 VLCGNKVDIKDRK 135
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 15 QDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73
D T+ FS V+ G+ V +WDTAG E Y + YRGA +L F L
Sbjct: 52 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ 111
Query: 74 SYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132
+Y V ++W+ EL +A + ++LVG K DL ++ VP EE R
Sbjct: 112 TYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQARE--------VPT-----EEARMFA 157
Query: 133 GSPA--YIECSSKTQQNVKAVFDAAIKVVL 160
+ ++E S+ NV+ F+ +K +
Sbjct: 158 ENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88
+ V G + L +WDTAGQ + + YRGA ++ + + +++Y +++ W+ + R+
Sbjct: 72 IEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARN 130
Query: 89 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
P IIL+G K DL + +T + ++ + G ++E S+KT +N
Sbjct: 131 LTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGEN 179
Query: 148 VKAVFDAAIKVV 159
V+ F A K +
Sbjct: 180 VEDAFLEAAKKI 191
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 14 KQDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72
K D T+ F + ++ V G V L +WDTAG E + + YRGA +L + + S+
Sbjct: 34 KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSR 93
Query: 73 ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQF-FIDHPGAVPITTAQGEELRK 130
+Y N W+ + R A + IIL G K DL D++ F++ E
Sbjct: 94 ETY-NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152
Query: 131 LIG---SPAYIECSSK 143
L G A+++C+ K
Sbjct: 153 LTGEDVEEAFVQCARK 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAGQE + L Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 16/148 (10%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY-RGADVFILAFSLISKA 73
+ Y PTV + +S V + +L L DTAGQ++Y+ L P S+ G ++L +S+ S
Sbjct: 51 EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLH 109
Query: 74 SYENVAKKWIPELR--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 131
S++ V + +L H VP++LVG K DL +++ + +G++L +
Sbjct: 110 SFQ-VIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAES 158
Query: 132 IGSPAYIECSSKTQQNVKAVFDAAIKVV 159
G+ ++E S++ Q + +F I+ +
Sbjct: 159 WGA-TFMESSARENQLTQGIFTKVIQEI 185
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
V +DG + + LWDTAGQE + + + YR + + + + AS+ ++ WI E +
Sbjct: 62 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECK 120
Query: 88 HY--APGVPIILVGTKLDLR 105
+ A +P ILVG K DLR
Sbjct: 121 QHLLANDIPRILVGNKCDLR 140
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 40 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILV 98
+WDTAG E + L P+ YRG+ I+ + + + ++ + K W+ ELR H P + + +
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIA 117
Query: 99 GTKLDLRDDKQ 109
G K DL D ++
Sbjct: 118 GNKCDLTDVRE 128
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 23 DNFSANVVVDGSTVN---LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79
D + ++VDG + L +W+ G+ ++ L + D +++ +S+ +AS+E +
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 80 KKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138
+ I R +PIILVG K DL ++ + A + + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-----------VFDXKFI 149
Query: 139 ECSSKTQQNVKAVFDAAIKVV 159
E S+ Q NVK +F+ ++ V
Sbjct: 150 ETSAAVQHNVKELFEGIVRQV 170
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 119
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 120 VLCGNKVDIKDRK 132
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 23 DNFSANVVVDGSTVN---LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79
D + ++VDG + L +W+ G+ ++ L + D +++ +S+ +AS+E +
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKAS 100
Query: 80 KKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138
+ I R +PIILVG K DL ++ + A + + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-----------VFDCKFI 149
Query: 139 ECSSKTQQNVKAVFDAAIKVV 159
E S+ Q NVK +F+ ++ V
Sbjct: 150 ETSAAVQHNVKELFEGIVRQV 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 55 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 113
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 114 VLCGNKVDIKDRK 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 59 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPI 117
Query: 96 ILVGTKLDLRDDK 108
+L G K+D++D K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88
+ V+ + +WDTAG E Y + YRGA ++ + + +SYEN W+ ELR
Sbjct: 52 IEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRE 110
Query: 89 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
A V + L+G K DL H AVP A+ + + + E S+ N
Sbjct: 111 NADDNVAVGLIGNKSDLA--------HLRAVPTDEAKNFAMENQM---LFTETSALNSDN 159
Query: 148 VKAVF 152
V F
Sbjct: 160 VDKAF 164
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 29 VVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87
V +DG + + LWDTAGQE + + + YR + + + AS+ ++ WI E +
Sbjct: 71 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECK 129
Query: 88 HY--APGVPIILVGTKLDLRDDKQFFID 113
+ A +P ILVG K DLR Q D
Sbjct: 130 QHLLANDIPRILVGNKCDLRSAIQVPTD 157
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D + V+VD V + +WDTAGQE + L YRGAD +L F + + +++ + W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSW 102
Query: 83 IPE-LRHYAP----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137
E L +P P +++G K+DL + + + T + + + Y
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPY 151
Query: 138 IECSSKTQQNVKAVFDAAIKVVL 160
E S+K NV+ F + L
Sbjct: 152 FETSAKEAINVEQAFQTIARNAL 174
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D + V+VD V + +WDTAGQE + L YRGAD +L F + + +++ + W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSW 102
Query: 83 IPE-LRHYAP----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137
E L +P P +++G K+DL + + + T + + + Y
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPY 151
Query: 138 IECSSKTQQNVKAVFDAAIKVVL 160
E S+K NV+ F + L
Sbjct: 152 FETSAKEAINVEQAFQTIARNAL 174
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 23 DNFSANVVVDGSTVN---LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79
D + ++VDG + L +W+ G+ ++ L + D +++ +S+ +AS+E +
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 80 KKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138
+ I R +PIILVG K DL ++ + A + + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----------VFDCKFI 149
Query: 139 ECSSKTQQNVKAVFDAAIKVV 159
E S+ Q NVK +F+ ++ V
Sbjct: 150 ETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 23 DNFSANVVVDGSTVN---LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79
D + ++VDG + L +W+ G+ ++ L + D +++ +S+ +AS+E +
Sbjct: 74 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 131
Query: 80 KKWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138
+ I R +PIILVG K DL ++ + A + + +I
Sbjct: 132 ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----------VFDCKFI 180
Query: 139 ECSSKTQQNVKAVFDAAIKVV 159
E S+ Q NVK +F+ ++ V
Sbjct: 181 ETSAAVQHNVKELFEGIVRQV 201
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 4 IYIICNYSLGKQDYVPTVFD-----NFSANVVV----------DGSTVNLGLWDTAGQED 48
I +I + +GK Y+ V D N++A V G+ + +WDTAGQE
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 49 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 107
L+ + Y GA IL F + S+ + +N+A +W+ E + PI++ K+D+++
Sbjct: 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 108 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 147
++ I + + + E Y E S+KT N
Sbjct: 133 QK--ISKKLVMEVLKGKNYE---------YFEISAKTAHN 161
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPI 112
Query: 96 ILVGTKLDLRDDK 108
+L G K+D+++ K
Sbjct: 113 VLCGNKVDVKERK 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPI 111
Query: 96 ILVGTKLDLRDDK 108
+L G K+D+++ K
Sbjct: 112 VLCGNKVDVKERK 124
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D + V+VD V + +WDTAGQE + L YRGAD +L F + + +++ + W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSW 102
Query: 83 IPE-LRHYAP----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137
E L +P P +++G K+D + + + T + + + Y
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDFENRQ-----------VATKRAQAWCYSKNNIPY 151
Query: 138 IECSSKTQQNVKAVFDAAIKVVL 160
E S+K NV+ F + L
Sbjct: 152 FETSAKEAINVEQAFQTIARNAL 174
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 95
+ +WDTAG E + LR Y A I+ F + S+ +Y+NV W +L +PI
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPI 119
Query: 96 ILVGTKLDLRDDK 108
+L G K+D+++ K
Sbjct: 120 VLCGNKVDVKERK 132
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKK 81
D + ++VD V L ++D Q D LR + D F++ FS+ + S+ V +
Sbjct: 59 DTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET 118
Query: 82 WIPELRHYAP--GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAY 137
+ LR P +P+ILVG K DL ++ + EE R L G S +
Sbjct: 119 LL-RLRAGRPHHDLPVILVGNKSDLARSREVSL-------------EEGRHLAGTLSCKH 164
Query: 138 IECSSKTQQNVKAVFDAAIKVV 159
IE S+ N + +F+ A++ +
Sbjct: 165 IETSAALHHNTRELFEGAVRQI 186
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82
D + V+VD V + +WDTAG E + L YRGAD +L F + + +++ + W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSW 102
Query: 83 IPE-LRHYAP----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137
E L +P P +++G K+DL + + + T + + + Y
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPY 151
Query: 138 IECSSKTQQNVKAVFDAAIKVVL 160
E S+K NV+ F + L
Sbjct: 152 FETSAKEAINVEQAFQTIARNAL 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 24 NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E ++ +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 84 PELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
R VPIILVG K DL ++ +D A + + +IE S+
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 143 KTQQNVKAVFDAAIK 157
NV+A+F+ ++
Sbjct: 146 ALHHNVQALFEGVVR 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 24 NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E ++ +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 84 PELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
R VPIILVG K DL ++ +D A + + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 143 KTQQNVKAVFDAAIK 157
NV+A+F+ ++
Sbjct: 151 ALHHNVQALFEGVVR 165
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 24 NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83
+ ++VVDG +L ++D Q+ L D +++ +S+ K S+E ++ +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 84 PELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 142
R VPIILVG K DL ++ +D A + + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 143 KTQQNVKAVFDAAIKVV 159
NV+A+F+ ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASY 75
Y PT+ + F+ + V+G +L L DTAGQ++Y+ + P +Y + +IL +S+ S S+
Sbjct: 30 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSF 88
Query: 76 ENVAKKWIPELRHYAPGV--PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E V K +L V PI+LVG K DL ++ I+ +G+ L +
Sbjct: 89 E-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----------VISYEEGKALAES-W 136
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K Q VF
Sbjct: 137 NAAFLESSAKENQTAVDVF 155
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASY 75
Y PT+ + F+ + V+G +L L DTAGQ++Y+ + P +Y + +IL +S+ S S+
Sbjct: 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSF 93
Query: 76 ENVAKKWIPELRHYAPGV--PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E V K +L V PI+LVG K DL ++ I+ +G+ L +
Sbjct: 94 E-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----------VISYEEGKALAES-W 141
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K Q VF
Sbjct: 142 NAAFLESSAKENQTAVDVF 160
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASY 75
Y PT+ + F+ + V+G +L L DTAGQ++Y+ + P +Y + +IL +S+ S S+
Sbjct: 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSF 93
Query: 76 ENVAKKWIPELRHYAPGV--PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133
E V K +L V PI+LVG K DL ++ I+ +G+ L +
Sbjct: 94 E-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----------VISYEEGKALAES-W 141
Query: 134 SPAYIECSSKTQQNVKAVF 152
+ A++E S+K Q VF
Sbjct: 142 NAAFLESSAKENQTAVDVF 160
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKK 81
D + ++VD V L ++D Q D L+ + D F++ FS+ + S+ V +
Sbjct: 38 DTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97
Query: 82 WIPELRHYAP--GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAY 137
+ LR P +P+ILVG K DL ++ + EE R L G S +
Sbjct: 98 LL-RLRAGRPHHDLPVILVGNKSDLARSREVSL-------------EEGRHLAGTLSCKH 143
Query: 138 IECSSKTQQNVKAVFDAAIKVV 159
IE S+ N + +F+ A++ +
Sbjct: 144 IETSAALHHNTRELFEGAVRQI 165
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 23 DNFSANVVVDGSTVNLGLWDT--AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80
D + + VDG L + DT A + D + + +G +++ +S+ + S+E+ ++
Sbjct: 39 DVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE 98
Query: 81 KWIPELR-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 139
I R H A VPIILVG K DL ++ ++ A + + +IE
Sbjct: 99 LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----------VFDCKFIE 147
Query: 140 CSSKTQQNVKAVFDA 154
S+ Q NV +F+
Sbjct: 148 TSATLQHNVAELFEG 162
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 23 DNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKK 81
D + ++VD V L ++D Q D L+ + D F++ FS+ + S+ V +
Sbjct: 48 DTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 107
Query: 82 WIPELRHYAP--GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAY 137
+ LR P +P+ILVG K DL ++ + EE R L G S +
Sbjct: 108 LL-RLRAGRPHHDLPVILVGNKSDLARSREVSL-------------EEGRHLAGTLSCKH 153
Query: 138 IECSSKTQQNVKAVFDAAIKVV 159
IE S+ N + +F+ A++ +
Sbjct: 154 IETSAALHHNTRELFEGAVRQI 175
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 16/137 (11%)
Query: 19 PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASYEN 77
PT+ + F+ + V+G +L L DTAGQ++Y+ + P +Y + +IL +S+ S S+E
Sbjct: 35 PTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFE- 92
Query: 78 VAKKWIPELRHYAPGV--PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135
V K +L V PI+LVG K DL ++ I+ +G+ L + +
Sbjct: 93 VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER----------VISYEEGKALAES-WNA 141
Query: 136 AYIECSSKTQQNVKAVF 152
A++E S+K Q VF
Sbjct: 142 AFLESSAKENQTAVDVF 158
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 97
L +WD AG+E++ P +++ + L + + K W+ ++ A P+IL
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 98 VGTKLDLRDDKQ 109
VGT LD+ D+KQ
Sbjct: 116 VGTHLDVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 97
L +WD AG+E++ P +++ + L + + K W+ ++ A P+IL
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 98 VGTKLDLRDDKQ 109
VGT LD+ D+KQ
Sbjct: 118 VGTHLDVSDEKQ 129
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 74
+D +PTV F+ V G+ V + +WD GQ + + RG + + +
Sbjct: 49 EDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREK 105
Query: 75 YE-------NVAKKWIPELRHYAPGVPIILVGTKLDL---RDDKQFF 111
E N+ K P+L+ G+P++++G K DL D+KQ
Sbjct: 106 IEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDLPNALDEKQLI 146
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 11 SLGKQDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 69
+ GKQ D F + + G+ V L +WD GQ ++ GA +L + +
Sbjct: 30 TFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDI 89
Query: 70 ISKASYENVAKKW---IPELRHYAPGVPII-LVGTKLDLR 105
+ S+EN+ + W + ++ + P++ LVG K+DL
Sbjct: 90 TNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLE 128
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI---- 70
+D +PTV F+ + G+ V + LWD GQ + + RG +
Sbjct: 49 EDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK 105
Query: 71 ---SKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104
SK N+ K P+L+ G+P++++G K DL
Sbjct: 106 IEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI---- 70
+D +PTV F+ + G+ V + LWD GQ + + RG +
Sbjct: 58 EDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK 114
Query: 71 ---SKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104
SK N+ K P+L+ G+P++++G K DL
Sbjct: 115 IEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 145
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 16 DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFSLISKAS 74
+Y P + D +S+ VD V+L + DTA + N R L++ A F++ +S +
Sbjct: 49 EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNW--AHAFLVVYS-VDSRQ 105
Query: 75 YENVAKKWIPELRHYAP----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 130
+ + ++ L +A +P +L+G KLD+ +Q +T A+G L
Sbjct: 106 SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAG 155
Query: 131 LIGSPAYIECSSKTQQNVKAVFDAAIK 157
G + + ++V+ VF A++
Sbjct: 156 RFGCLFFEVSACLDFEHVQHVFHEAVR 182
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 13 GKQDYVPTVFDNFSA--------NVVVDGS------TVNLGLWDTAGQ----EDY-NRLR 53
GK +F N+SA + V+ S + L LWD GQ E+Y + +
Sbjct: 18 GKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQK 77
Query: 54 PLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDL 104
++ V I F + S +++ K + +LR Y+P I ++ K+DL
Sbjct: 78 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 130
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-- 92
+V L L DTAG + Y + G IL F + S S+E+ K W L+ P
Sbjct: 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES-CKAWFELLKSARPDRE 130
Query: 93 --VPIILVGTKLDL 104
+ +LV K DL
Sbjct: 131 RPLRAVLVANKTDL 144
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS------ 68
Q+ +PT+ FS S+++ ++D +GQ Y L Y+ I
Sbjct: 49 QNILPTI--GFSIEKF-KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR 105
Query: 69 -LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106
+++K + + P+++H +PI+ K+DLRD
Sbjct: 106 MVVAKEELDTLLNH--PDIKHRR--IPILFFANKMDLRD 140
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 104 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI---ECSSKTQQN 147
L D + F ID P QGEE + IG P + +CS+ T N
Sbjct: 88 LGDTRGFLID---GYPREVKQGEEFGRRIGDPQLVICMDCSADTMTN 131
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 6 IICNYSLGKQDYVPT-VFDNFSANVVVDGST----------VNLGLWDTAGQEDYNRLRP 54
++ + +G+ P+ V+D+ + V G T +++ LWD AGQE +R
Sbjct: 105 LLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRD 164
Query: 55 LSYRGADVFILAFSLISKASYE---NVAKKW 82
L G D F S + + + + +AK W
Sbjct: 165 LLGGGVDSFPAYVSGLPERTLKARGELAKYW 195
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 6 IICNYSLGKQDYVPT-VFDNFSANVVVDGST----------VNLGLWDTAGQEDYNRLRP 54
++ + +G+ P+ V+D+ + V G T +++ LWD AGQE +R
Sbjct: 85 LLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRD 144
Query: 55 LSYRGADVFILAFSLISKASYE---NVAKKW 82
L G D F S + + + + +AK W
Sbjct: 145 LLGGGVDSFPAYVSGLPERTLKARGELAKYW 175
>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
Length = 397
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 95 IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 154
++ V KL +++++ FFI+ ++ +QG EL +Y+ ++ T +N+K D
Sbjct: 88 VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELN------SYLVDNNDTPKNLKNYIDN 141
Query: 155 AIKVV 159
+ ++
Sbjct: 142 VVGII 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,017,584
Number of Sequences: 62578
Number of extensions: 197361
Number of successful extensions: 1027
Number of sequences better than 100.0: 304
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 304
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)