Query 030337
Match_columns 179
No_of_seqs 115 out of 1394
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.7E-40 1.4E-44 230.2 13.6 148 4-162 25-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.7E-38 5.8E-43 221.3 15.8 149 3-163 20-170 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 1.7E-36 3.7E-41 220.3 17.4 172 3-179 18-191 (191)
4 KOG0078 GTP-binding protein SE 100.0 1.3E-36 2.7E-41 216.4 13.8 151 3-165 27-179 (207)
5 cd04133 Rop_like Rop subfamily 100.0 8.2E-36 1.8E-40 213.9 17.8 160 3-162 16-175 (176)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2E-36 4.4E-41 212.2 13.5 148 3-162 37-187 (221)
7 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2E-35 4.4E-40 219.6 16.5 160 3-162 28-190 (232)
8 KOG0098 GTPase Rab2, small G p 100.0 4.2E-36 9.2E-41 209.1 10.4 149 3-163 21-171 (216)
9 KOG0394 Ras-related GTPase [Ge 100.0 2.5E-35 5.4E-40 204.8 12.5 152 3-163 24-181 (210)
10 KOG0079 GTP-binding protein H- 100.0 8.7E-36 1.9E-40 200.4 9.8 148 3-162 23-171 (198)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-34 2.8E-39 208.8 16.4 159 3-161 20-181 (182)
12 KOG0080 GTPase Rab18, small G 100.0 5E-35 1.1E-39 199.2 11.8 149 3-163 26-177 (209)
13 cd04121 Rab40 Rab40 subfamily. 100.0 2.2E-34 4.7E-39 208.7 15.6 149 3-163 21-170 (189)
14 cd04131 Rnd Rnd subfamily. Th 100.0 7.6E-34 1.7E-38 204.2 16.8 158 3-160 16-176 (178)
15 cd04120 Rab12 Rab12 subfamily. 100.0 5E-34 1.1E-38 208.7 15.7 148 3-162 15-165 (202)
16 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 8E-34 1.7E-38 210.0 16.9 160 3-162 16-178 (222)
17 cd04134 Rho3 Rho3 subfamily. 100.0 1.9E-33 4.1E-38 204.0 18.0 173 3-179 15-189 (189)
18 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.9E-34 4.2E-39 204.6 12.4 147 4-162 30-178 (222)
19 KOG0393 Ras-related small GTPa 100.0 8.3E-34 1.8E-38 202.6 14.9 162 3-164 19-183 (198)
20 KOG0093 GTPase Rab3, small G p 100.0 2.8E-34 6.2E-39 192.9 11.2 150 3-164 36-187 (193)
21 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-33 3.2E-38 204.7 14.4 165 3-179 14-190 (190)
22 cd04132 Rho4_like Rho4-like su 100.0 4.5E-33 9.7E-38 201.5 16.7 171 3-179 15-187 (187)
23 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.7E-33 1.9E-37 198.3 16.9 157 3-159 16-174 (175)
24 KOG0091 GTPase Rab39, small G 100.0 3.2E-34 6.9E-39 195.8 8.6 149 3-163 23-176 (213)
25 KOG0086 GTPase Rab4, small G p 100.0 2.5E-33 5.5E-38 189.6 9.3 150 4-165 25-176 (214)
26 KOG0095 GTPase Rab30, small G 100.0 2E-33 4.4E-38 189.4 8.7 147 4-162 23-171 (213)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.9E-32 6.4E-37 195.0 14.9 148 3-162 17-166 (172)
28 PTZ00369 Ras-like protein; Pro 100.0 4.2E-32 9.1E-37 196.9 15.5 165 3-179 20-189 (189)
29 cd01871 Rac1_like Rac1-like su 100.0 9.7E-32 2.1E-36 192.7 16.3 156 3-158 16-173 (174)
30 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.3E-33 9.3E-38 184.6 7.8 147 4-162 13-162 (192)
31 smart00176 RAN Ran (Ras-relate 100.0 1.5E-31 3.3E-36 195.2 16.1 146 3-162 10-156 (200)
32 KOG0088 GTPase Rab21, small G 100.0 5.1E-33 1.1E-37 189.1 7.4 148 3-162 28-177 (218)
33 PTZ00099 rab6; Provisional 100.0 5.4E-31 1.2E-35 188.9 16.5 142 10-163 2-145 (176)
34 cd04109 Rab28 Rab28 subfamily. 100.0 5.4E-31 1.2E-35 194.8 16.2 147 3-161 15-167 (215)
35 KOG0081 GTPase Rab27, small G 100.0 4.9E-32 1.1E-36 184.4 9.3 151 3-165 24-186 (219)
36 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1E-30 2.2E-35 191.4 16.7 150 3-163 15-171 (201)
37 cd04122 Rab14 Rab14 subfamily. 100.0 7.1E-31 1.5E-35 186.6 15.3 147 3-161 17-165 (166)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-30 2.7E-35 188.2 15.9 152 3-162 15-168 (182)
39 smart00174 RHO Rho (Ras homolo 100.0 2.8E-30 6.1E-35 184.6 17.6 159 3-161 13-173 (174)
40 cd04110 Rab35 Rab35 subfamily. 100.0 2.3E-30 5E-35 189.3 16.0 148 3-162 21-169 (199)
41 cd04117 Rab15 Rab15 subfamily. 100.0 3E-30 6.5E-35 182.7 15.3 144 3-158 15-160 (161)
42 KOG0395 Ras-related GTPase [Ge 100.0 3.7E-30 8.1E-35 186.9 15.0 150 2-163 17-168 (196)
43 cd04136 Rap_like Rap-like subf 100.0 6.7E-30 1.5E-34 180.5 15.2 145 3-159 16-162 (163)
44 PLN03071 GTP-binding nuclear p 100.0 8.4E-30 1.8E-34 188.8 15.8 146 3-162 28-174 (219)
45 cd01873 RhoBTB RhoBTB subfamil 100.0 1.6E-29 3.5E-34 184.1 16.9 146 10-158 30-194 (195)
46 cd04125 RabA_like RabA-like su 100.0 1.1E-29 2.3E-34 184.1 15.7 164 3-178 15-187 (188)
47 cd04175 Rap1 Rap1 subgroup. T 100.0 1E-29 2.2E-34 180.2 15.0 145 3-159 16-162 (164)
48 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.3E-29 7E-34 179.2 17.0 155 3-157 15-171 (173)
49 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-29 3.7E-34 178.7 15.1 145 3-159 16-162 (163)
50 PF00071 Ras: Ras family; Int 100.0 1.3E-29 2.8E-34 179.1 14.3 146 3-160 14-161 (162)
51 cd04126 Rab20 Rab20 subfamily. 100.0 2E-29 4.3E-34 186.4 15.4 154 3-161 15-191 (220)
52 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-29 3.1E-34 181.9 14.3 147 3-161 19-178 (180)
53 cd01867 Rab8_Rab10_Rab13_like 100.0 3.8E-29 8.3E-34 177.9 15.2 147 3-161 18-166 (167)
54 KOG0097 GTPase Rab14, small G 100.0 3.8E-30 8.3E-35 172.3 9.3 148 4-163 27-176 (215)
55 cd01865 Rab3 Rab3 subfamily. 100.0 5.2E-29 1.1E-33 176.8 15.7 146 3-160 16-163 (165)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.8E-29 1.5E-33 177.3 15.2 149 3-161 15-166 (170)
57 cd04135 Tc10 TC10 subfamily. 100.0 2.1E-28 4.6E-33 174.8 17.5 158 3-160 15-174 (174)
58 cd04112 Rab26 Rab26 subfamily. 100.0 1E-28 2.2E-33 179.5 15.5 148 3-162 15-165 (191)
59 cd04118 Rab24 Rab24 subfamily. 100.0 2.9E-28 6.3E-33 177.1 17.6 152 3-162 15-168 (193)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.2E-28 2.6E-33 175.0 15.1 146 3-160 17-164 (166)
61 cd04103 Centaurin_gamma Centau 100.0 1.5E-28 3.4E-33 173.5 15.1 141 3-158 15-157 (158)
62 cd00877 Ran Ran (Ras-related n 100.0 3E-28 6.5E-33 173.3 16.2 145 3-161 15-160 (166)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2E-28 4.3E-33 172.5 15.1 144 3-159 16-161 (162)
64 cd04140 ARHI_like ARHI subfami 100.0 1.8E-28 3.9E-33 174.1 14.9 144 3-158 16-163 (165)
65 cd04177 RSR1 RSR1 subgroup. R 100.0 3.9E-28 8.5E-33 172.8 15.9 147 3-160 16-164 (168)
66 cd01870 RhoA_like RhoA-like su 100.0 8.9E-28 1.9E-32 171.8 17.2 157 3-159 16-174 (175)
67 cd04116 Rab9 Rab9 subfamily. 100.0 3.8E-28 8.3E-33 173.0 15.1 145 3-159 20-170 (170)
68 cd04106 Rab23_lke Rab23-like s 100.0 3E-28 6.5E-33 172.0 14.4 144 3-158 15-161 (162)
69 cd04119 RJL RJL (RabJ-Like) su 100.0 3.9E-28 8.5E-33 172.0 14.9 146 3-160 15-167 (168)
70 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-27 3.5E-32 172.6 18.0 159 3-161 16-174 (187)
71 cd01864 Rab19 Rab19 subfamily. 100.0 4.4E-28 9.5E-33 172.0 14.7 145 3-158 18-164 (165)
72 PLN03110 Rab GTPase; Provision 100.0 3.6E-28 7.7E-33 179.8 14.5 147 3-161 27-175 (216)
73 smart00173 RAS Ras subfamily o 100.0 5.7E-28 1.2E-32 171.0 15.0 146 3-160 15-162 (164)
74 cd04143 Rhes_like Rhes_like su 100.0 6.9E-28 1.5E-32 181.3 15.6 148 3-161 15-172 (247)
75 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.2E-28 1.6E-32 170.3 14.9 145 3-159 17-163 (164)
76 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-27 2.8E-32 169.1 16.1 144 3-161 15-159 (161)
77 cd04111 Rab39 Rab39 subfamily. 100.0 5.4E-28 1.2E-32 178.2 14.4 148 3-162 17-168 (211)
78 cd04142 RRP22 RRP22 subfamily. 100.0 1.7E-27 3.8E-32 173.9 16.4 165 3-179 15-198 (198)
79 cd01866 Rab2 Rab2 subfamily. 100.0 2.1E-27 4.5E-32 169.1 15.3 147 3-161 19-167 (168)
80 cd01868 Rab11_like Rab11-like. 100.0 2.1E-27 4.6E-32 168.3 14.8 145 3-159 18-164 (165)
81 cd01892 Miro2 Miro2 subfamily. 100.0 2.4E-27 5.3E-32 169.1 14.6 147 3-161 19-167 (169)
82 cd04113 Rab4 Rab4 subfamily. 100.0 3.2E-27 6.9E-32 166.8 14.6 145 3-159 15-161 (161)
83 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4E-27 8.6E-32 168.0 15.0 145 3-159 17-168 (170)
84 cd04146 RERG_RasL11_like RERG/ 100.0 2.7E-27 5.8E-32 167.9 14.0 146 3-160 14-164 (165)
85 PLN03108 Rab family protein; P 100.0 4.1E-27 8.8E-32 173.5 14.8 148 3-162 21-170 (210)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.1E-26 2.4E-31 164.4 14.6 145 3-159 15-163 (164)
87 cd04148 RGK RGK subfamily. Th 99.9 6.3E-26 1.4E-30 168.3 15.9 145 3-161 15-164 (221)
88 PLN03118 Rab family protein; P 99.9 8.2E-26 1.8E-30 166.6 15.7 149 3-163 29-180 (211)
89 cd01861 Rab6 Rab6 subfamily. 99.9 7.6E-26 1.7E-30 159.5 14.8 144 3-158 15-160 (161)
90 cd01860 Rab5_related Rab5-rela 99.9 1.3E-25 2.9E-30 158.6 15.0 145 3-159 16-162 (163)
91 cd01862 Rab7 Rab7 subfamily. 99.9 1.7E-25 3.7E-30 159.3 15.1 149 3-162 15-169 (172)
92 KOG4252 GTP-binding protein [S 99.9 1.5E-28 3.2E-33 170.6 -0.8 147 3-161 35-182 (246)
93 smart00175 RAB Rab subfamily o 99.9 1.9E-25 4.1E-30 157.8 15.1 147 3-161 15-163 (164)
94 cd04137 RheB Rheb (Ras Homolog 99.9 1.3E-25 2.8E-30 161.4 14.0 163 3-179 16-180 (180)
95 cd00157 Rho Rho (Ras homology) 99.9 5.6E-25 1.2E-29 156.5 16.4 155 3-157 15-170 (171)
96 cd01863 Rab18 Rab18 subfamily. 99.9 4.4E-25 9.5E-30 155.7 15.7 143 3-158 15-160 (161)
97 cd04139 RalA_RalB RalA/RalB su 99.9 4.3E-25 9.4E-30 155.9 15.3 146 3-160 15-162 (164)
98 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.2E-26 4.8E-31 163.4 8.4 140 3-157 14-163 (164)
99 PLN00223 ADP-ribosylation fact 99.9 1.8E-25 3.9E-30 161.1 13.2 140 3-161 32-179 (181)
100 cd04123 Rab21 Rab21 subfamily. 99.9 7.5E-25 1.6E-29 154.2 15.4 145 3-159 15-161 (162)
101 cd04149 Arf6 Arf6 subfamily. 99.9 1.6E-25 3.5E-30 159.5 10.1 139 3-157 24-167 (168)
102 cd01893 Miro1 Miro1 subfamily. 99.9 1.8E-24 4E-29 153.6 14.8 150 3-161 15-165 (166)
103 cd04158 ARD1 ARD1 subfamily. 99.9 1.1E-24 2.3E-29 155.4 13.5 143 3-162 14-163 (169)
104 cd04147 Ras_dva Ras-dva subfam 99.9 1.7E-24 3.6E-29 158.2 14.7 147 3-160 14-163 (198)
105 smart00177 ARF ARF-like small 99.9 1.4E-24 3.1E-29 155.6 13.8 140 3-160 28-174 (175)
106 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-24 7.2E-29 152.4 15.4 145 3-159 22-168 (169)
107 PTZ00132 GTP-binding nuclear p 99.9 4.9E-24 1.1E-28 157.6 16.1 147 3-163 24-171 (215)
108 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1E-24 2.2E-29 154.1 11.4 138 3-157 15-158 (159)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.9E-24 4.2E-29 156.0 12.2 151 3-167 18-177 (183)
110 PTZ00133 ADP-ribosylation fact 99.9 4.3E-24 9.4E-29 154.1 13.4 141 3-162 32-180 (182)
111 cd04102 RabL3 RabL3 (Rab-like3 99.9 3E-24 6.6E-29 156.9 12.1 131 3-145 15-175 (202)
112 cd00876 Ras Ras family. The R 99.9 9.1E-24 2E-28 148.4 13.4 145 3-159 14-160 (160)
113 cd00154 Rab Rab family. Rab G 99.9 6.2E-23 1.3E-27 143.4 13.7 142 3-156 15-158 (159)
114 KOG1673 Ras GTPases [General f 99.9 3.3E-23 7.2E-28 140.8 11.7 154 3-163 35-189 (205)
115 PLN00023 GTP-binding protein; 99.9 4.1E-23 8.8E-28 158.5 13.4 129 3-136 36-191 (334)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.5E-23 3.3E-28 149.2 9.1 141 3-157 14-166 (167)
117 cd04154 Arl2 Arl2 subfamily. 99.9 1E-22 2.3E-27 145.5 11.8 137 3-157 29-172 (173)
118 cd04157 Arl6 Arl6 subfamily. 99.9 4.5E-23 9.9E-28 145.4 9.4 139 3-157 14-161 (162)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5E-22 1.1E-26 142.2 11.6 138 3-157 30-173 (174)
120 cd04151 Arl1 Arl1 subfamily. 99.9 4.6E-22 9.9E-27 140.1 10.0 138 3-157 14-157 (158)
121 KOG0070 GTP-binding ADP-ribosy 99.9 7.5E-21 1.6E-25 133.2 14.9 143 3-161 32-179 (181)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.1E-21 4.7E-26 136.7 11.4 138 3-157 14-159 (160)
123 PF00025 Arf: ADP-ribosylation 99.9 3.9E-21 8.5E-26 137.8 12.7 140 4-159 30-175 (175)
124 cd00879 Sar1 Sar1 subfamily. 99.9 3E-21 6.5E-26 139.9 11.9 139 3-158 34-189 (190)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 7.8E-21 1.7E-25 134.7 11.6 130 12-157 29-166 (167)
126 KOG0075 GTP-binding ADP-ribosy 99.9 4.8E-21 1E-25 129.1 9.6 139 3-159 35-181 (186)
127 smart00178 SAR Sar1p-like memb 99.8 1.4E-20 3E-25 136.0 11.7 139 3-158 32-183 (184)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-20 2.4E-25 132.9 10.4 137 3-157 14-157 (158)
129 KOG0073 GTP-binding ADP-ribosy 99.8 9.8E-20 2.1E-24 124.9 12.8 136 13-161 40-179 (185)
130 cd04159 Arl10_like Arl10-like 99.8 6.4E-20 1.4E-24 128.2 11.4 138 3-157 14-158 (159)
131 cd01890 LepA LepA subfamily. 99.8 7.7E-20 1.7E-24 131.1 12.1 112 32-159 63-176 (179)
132 COG1100 GTPase SAR1 and relate 99.8 1.2E-19 2.5E-24 134.3 12.7 163 3-165 20-190 (219)
133 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 3.1E-20 6.7E-25 130.2 7.2 146 4-163 26-172 (216)
134 KOG4423 GTP-binding protein-li 99.8 8.2E-22 1.8E-26 137.8 -1.6 151 3-163 40-197 (229)
135 cd04155 Arl3 Arl3 subfamily. 99.8 2.2E-18 4.7E-23 122.9 11.3 135 3-157 29-172 (173)
136 cd01897 NOG NOG1 is a nucleola 99.8 4.2E-18 9E-23 120.8 12.4 140 3-160 15-168 (168)
137 TIGR02528 EutP ethanolamine ut 99.8 9.3E-19 2E-23 121.0 6.8 122 3-156 15-141 (142)
138 KOG3883 Ras family small GTPas 99.8 2.1E-17 4.5E-22 112.4 12.7 152 4-167 25-182 (198)
139 TIGR00231 small_GTP small GTP- 99.8 1.7E-17 3.7E-22 115.4 12.2 142 3-156 16-160 (161)
140 cd04171 SelB SelB subfamily. 99.7 1.6E-17 3.4E-22 117.1 10.2 138 3-157 15-163 (164)
141 KOG0071 GTP-binding ADP-ribosy 99.7 6.7E-17 1.4E-21 108.4 11.9 141 4-160 33-178 (180)
142 KOG0072 GTP-binding ADP-ribosy 99.7 3.8E-17 8.2E-22 110.0 10.0 130 18-161 47-180 (182)
143 cd01879 FeoB Ferrous iron tran 99.7 1.2E-16 2.5E-21 112.1 12.7 136 3-158 11-155 (158)
144 cd00882 Ras_like_GTPase Ras-li 99.7 1.6E-16 3.5E-21 109.3 13.2 142 3-156 11-156 (157)
145 cd01898 Obg Obg subfamily. Th 99.7 7.2E-17 1.6E-21 114.6 11.5 110 36-158 48-169 (170)
146 cd01891 TypA_BipA TypA (tyrosi 99.7 5.4E-17 1.2E-21 118.1 8.8 133 3-149 17-171 (194)
147 cd01894 EngA1 EngA1 subfamily. 99.7 2.6E-16 5.5E-21 110.0 11.7 136 3-159 12-157 (157)
148 TIGR01393 lepA GTP-binding pro 99.7 1.9E-16 4E-21 132.2 12.2 115 32-162 66-182 (595)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.5E-16 7.6E-21 110.7 11.6 144 3-159 15-165 (168)
150 PRK12299 obgE GTPase CgtA; Rev 99.7 9.5E-16 2.1E-20 119.9 12.7 114 36-161 206-329 (335)
151 PRK03003 GTP-binding protein D 99.7 3.9E-16 8.4E-21 127.7 10.7 144 3-160 226-382 (472)
152 cd01878 HflX HflX subfamily. 99.7 6.9E-16 1.5E-20 113.0 10.8 137 3-159 56-204 (204)
153 PRK04213 GTP-binding protein; 99.7 2.2E-16 4.9E-21 115.3 6.8 138 3-161 24-193 (201)
154 cd01881 Obg_like The Obg-like 99.6 1.3E-15 2.7E-20 108.6 9.8 141 3-158 11-175 (176)
155 PF08477 Miro: Miro-like prote 99.6 5.3E-16 1.2E-20 104.0 7.4 101 3-103 14-119 (119)
156 TIGR00487 IF-2 translation ini 99.6 3.6E-15 7.7E-20 124.2 13.4 138 3-158 102-248 (587)
157 TIGR00157 ribosome small subun 99.6 4.1E-15 8.9E-20 111.9 12.5 119 19-157 1-120 (245)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.1E-15 6.8E-20 121.0 12.0 134 3-161 218-361 (442)
159 PRK03003 GTP-binding protein D 99.6 2.1E-15 4.6E-20 123.4 10.7 138 3-161 53-200 (472)
160 TIGR03156 GTP_HflX GTP-binding 99.6 4.9E-15 1.1E-19 116.7 11.2 135 3-158 204-350 (351)
161 TIGR02729 Obg_CgtA Obg family 99.6 7.3E-15 1.6E-19 114.8 12.1 111 36-159 205-328 (329)
162 PRK15494 era GTPase Era; Provi 99.6 9.7E-15 2.1E-19 114.7 12.7 139 3-161 67-217 (339)
163 PRK05291 trmE tRNA modificatio 99.6 4.1E-15 8.8E-20 120.8 10.5 132 3-161 230-371 (449)
164 KOG0076 GTP-binding ADP-ribosy 99.6 1E-15 2.2E-20 106.3 5.8 131 17-162 53-189 (197)
165 TIGR03594 GTPase_EngA ribosome 99.6 1.5E-14 3.3E-19 117.1 13.6 141 3-160 187-344 (429)
166 CHL00189 infB translation init 99.6 1.3E-14 2.8E-19 122.9 11.1 140 3-159 259-409 (742)
167 cd00881 GTP_translation_factor 99.6 2.3E-14 4.9E-19 103.2 11.0 114 35-160 61-187 (189)
168 TIGR00436 era GTP-binding prot 99.6 3E-14 6.6E-19 108.8 11.8 141 3-161 15-165 (270)
169 KOG0074 GTP-binding ADP-ribosy 99.6 1.1E-14 2.3E-19 98.0 7.8 135 11-158 39-177 (185)
170 TIGR00437 feoB ferrous iron tr 99.6 3E-14 6.4E-19 119.1 12.3 137 3-159 9-154 (591)
171 PRK05306 infB translation init 99.6 4.1E-14 8.8E-19 120.8 13.1 142 3-158 305-450 (787)
172 TIGR00475 selB selenocysteine- 99.6 2.1E-14 4.6E-19 119.8 11.0 140 4-160 16-166 (581)
173 PRK00093 GTP-binding protein D 99.6 3.1E-14 6.7E-19 115.5 11.0 136 3-159 16-161 (435)
174 cd01888 eIF2_gamma eIF2-gamma 99.6 1.7E-14 3.7E-19 105.7 8.2 112 36-162 83-201 (203)
175 PRK05433 GTP-binding protein L 99.5 3.8E-14 8.3E-19 118.5 10.7 115 32-162 70-186 (600)
176 cd01889 SelB_euk SelB subfamil 99.5 3.7E-14 7.9E-19 103.0 9.4 117 33-162 65-188 (192)
177 PRK15467 ethanolamine utilizat 99.5 2.3E-14 4.9E-19 101.1 7.3 102 40-160 41-147 (158)
178 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.8E-13 4E-18 95.4 11.2 130 4-159 17-156 (157)
179 TIGR03594 GTPase_EngA ribosome 99.5 7.6E-14 1.6E-18 113.1 10.4 138 3-161 14-161 (429)
180 cd04105 SR_beta Signal recogni 99.5 4.2E-14 9.1E-19 103.7 8.0 104 3-107 15-124 (203)
181 PRK09518 bifunctional cytidyla 99.5 7.6E-14 1.6E-18 119.3 9.9 141 3-161 465-622 (712)
182 cd01895 EngA2 EngA2 subfamily. 99.5 9E-13 1.9E-17 93.2 13.7 139 4-158 18-173 (174)
183 PRK00454 engB GTP-binding prot 99.5 1.6E-13 3.5E-18 99.6 9.8 143 3-160 39-194 (196)
184 PRK11058 GTPase HflX; Provisio 99.5 3E-13 6.5E-18 109.0 12.1 142 3-161 212-363 (426)
185 PRK12297 obgE GTPase CgtA; Rev 99.5 6.3E-13 1.4E-17 106.8 13.6 111 36-162 206-329 (424)
186 PRK09518 bifunctional cytidyla 99.5 4.4E-13 9.5E-18 114.6 11.8 137 3-161 290-437 (712)
187 TIGR00491 aIF-2 translation in 99.5 3.4E-13 7.4E-18 112.3 10.1 115 37-158 70-214 (590)
188 cd04163 Era Era subfamily. Er 99.5 7.5E-13 1.6E-17 92.9 9.9 112 33-158 48-167 (168)
189 cd00880 Era_like Era (E. coli 99.5 1.3E-12 2.8E-17 90.7 10.8 111 35-159 44-163 (163)
190 TIGR00483 EF-1_alpha translati 99.4 2.7E-13 5.8E-18 109.8 8.0 114 32-152 81-199 (426)
191 KOG1707 Predicted Ras related/ 99.4 6.7E-14 1.5E-18 113.2 4.3 152 3-165 24-180 (625)
192 COG2229 Predicted GTPase [Gene 99.4 1.9E-12 4.2E-17 91.0 10.8 107 36-158 68-176 (187)
193 TIGR03598 GTPase_YsxC ribosome 99.4 3.9E-13 8.6E-18 96.5 7.1 132 3-149 33-179 (179)
194 PRK12296 obgE GTPase CgtA; Rev 99.4 3.4E-12 7.5E-17 104.0 12.9 113 36-161 206-341 (500)
195 PRK00093 GTP-binding protein D 99.4 3.1E-12 6.8E-17 103.9 12.3 142 4-159 189-343 (435)
196 PRK10218 GTP-binding protein; 99.4 2.2E-12 4.7E-17 107.9 11.4 129 20-162 51-197 (607)
197 PF00009 GTP_EFTU: Elongation 99.4 1.7E-12 3.7E-17 94.0 9.2 114 33-159 67-186 (188)
198 cd00066 G-alpha G protein alph 99.4 1.9E-12 4.1E-17 101.0 9.9 153 10-162 127-313 (317)
199 PRK10512 selenocysteinyl-tRNA- 99.4 2.7E-12 5.9E-17 107.7 10.8 140 4-160 16-166 (614)
200 PRK00089 era GTPase Era; Revie 99.4 3.4E-12 7.4E-17 98.5 10.2 112 36-161 53-172 (292)
201 cd01896 DRG The developmentall 99.4 2.2E-11 4.7E-16 91.1 13.9 111 28-159 41-225 (233)
202 TIGR01394 TypA_BipA GTP-bindin 99.4 2.6E-12 5.7E-17 107.4 9.2 118 31-162 59-193 (594)
203 KOG0462 Elongation factor-type 99.3 2.5E-11 5.4E-16 98.0 12.1 117 32-162 121-237 (650)
204 PRK12317 elongation factor 1-a 99.3 7.7E-12 1.7E-16 101.3 8.3 114 32-152 80-197 (425)
205 TIGR03680 eif2g_arch translati 99.3 8.4E-12 1.8E-16 100.5 7.8 111 35-160 79-196 (406)
206 PRK04000 translation initiatio 99.3 1.4E-11 2.9E-16 99.3 9.0 112 36-161 85-202 (411)
207 PRK00098 GTPase RsgA; Reviewed 99.3 5E-11 1.1E-15 92.3 11.8 130 9-157 27-164 (298)
208 smart00275 G_alpha G protein a 99.3 5.8E-11 1.3E-15 93.4 11.9 149 12-162 152-336 (342)
209 cd01876 YihA_EngB The YihA (En 99.3 2.7E-11 5.8E-16 85.1 8.6 140 3-158 14-169 (170)
210 PRK04004 translation initiatio 99.3 3.2E-11 6.8E-16 100.9 10.0 113 38-157 73-215 (586)
211 cd04167 Snu114p Snu114p subfam 99.3 2.9E-11 6.4E-16 89.2 8.7 70 32-105 67-136 (213)
212 PRK09554 feoB ferrous iron tra 99.3 1.3E-10 2.8E-15 99.8 13.3 136 4-159 19-167 (772)
213 cd01883 EF1_alpha Eukaryotic e 99.3 2.3E-11 4.9E-16 90.2 7.5 108 35-149 76-194 (219)
214 PRK12298 obgE GTPase CgtA; Rev 99.2 7.4E-11 1.6E-15 94.2 10.4 114 36-161 207-334 (390)
215 COG0481 LepA Membrane GTPase L 99.2 1.5E-10 3.3E-15 92.2 11.0 116 32-163 72-189 (603)
216 KOG0077 Vesicle coat complex C 99.2 2E-11 4.4E-16 84.4 5.1 140 4-159 36-192 (193)
217 PRK14845 translation initiatio 99.2 1.3E-10 2.8E-15 101.8 11.2 114 38-158 528-671 (1049)
218 cd04166 CysN_ATPS CysN_ATPS su 99.2 3.7E-11 8E-16 88.4 6.5 106 36-150 77-184 (208)
219 cd01854 YjeQ_engC YjeQ/EngC. 99.2 6.1E-10 1.3E-14 85.8 12.0 132 9-157 24-161 (287)
220 KOG0705 GTPase-activating prot 99.2 2.1E-10 4.6E-15 92.7 9.2 145 3-162 45-191 (749)
221 cd04165 GTPBP1_like GTPBP1-lik 99.2 4.2E-10 9.2E-15 83.7 10.2 110 36-157 84-220 (224)
222 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 4.2E-11 9.1E-16 89.0 4.8 118 35-162 47-178 (232)
223 cd01885 EF2 EF2 (for archaea a 99.1 1.5E-10 3.2E-15 85.9 7.2 69 33-105 70-138 (222)
224 PRK12289 GTPase RsgA; Reviewed 99.1 1.3E-09 2.7E-14 86.0 12.5 95 48-158 78-173 (352)
225 COG0532 InfB Translation initi 99.1 8E-10 1.7E-14 89.3 11.2 107 36-159 55-169 (509)
226 cd04168 TetM_like Tet(M)-like 99.1 7.1E-10 1.5E-14 83.2 10.0 71 32-106 60-130 (237)
227 PF02421 FeoB_N: Ferrous iron 99.1 1.2E-09 2.6E-14 76.5 10.4 109 27-155 40-156 (156)
228 PRK12288 GTPase RsgA; Reviewed 99.1 2.1E-09 4.5E-14 84.7 12.4 89 57-158 118-206 (347)
229 COG1160 Predicted GTPases [Gen 99.1 5.6E-10 1.2E-14 88.8 8.8 135 4-159 19-164 (444)
230 cd01855 YqeH YqeH. YqeH is an 99.1 7.8E-10 1.7E-14 80.2 7.8 94 49-159 24-124 (190)
231 PRK12736 elongation factor Tu; 99.1 1.4E-09 3E-14 87.4 9.9 119 31-160 70-201 (394)
232 cd01884 EF_Tu EF-Tu subfamily. 99.1 1.7E-09 3.7E-14 78.8 9.4 106 32-148 61-171 (195)
233 TIGR00485 EF-Tu translation el 99.0 1.6E-09 3.5E-14 87.1 9.8 106 30-146 69-179 (394)
234 COG1160 Predicted GTPases [Gen 99.0 6.5E-09 1.4E-13 82.9 11.7 129 19-159 211-350 (444)
235 PRK09866 hypothetical protein; 99.0 5.1E-09 1.1E-13 87.1 10.9 129 18-158 212-351 (741)
236 PF10662 PduV-EutP: Ethanolami 99.0 1E-09 2.2E-14 75.4 5.7 99 39-156 39-142 (143)
237 PRK00741 prfC peptide chain re 99.0 6.6E-09 1.4E-13 86.1 11.0 72 31-106 74-145 (526)
238 PRK13351 elongation factor G; 99.0 8.3E-09 1.8E-13 88.4 11.4 69 35-107 72-140 (687)
239 PRK12735 elongation factor Tu; 98.9 4.9E-09 1.1E-13 84.3 9.2 116 33-159 72-202 (396)
240 TIGR03597 GTPase_YqeH ribosome 98.9 2.5E-09 5.5E-14 84.8 7.1 96 46-158 50-151 (360)
241 PLN00043 elongation factor 1-a 98.9 3.7E-09 8E-14 86.1 8.2 111 32-150 81-203 (447)
242 COG1159 Era GTPase [General fu 98.9 1.1E-08 2.4E-13 77.5 10.0 114 35-162 53-174 (298)
243 KOG1145 Mitochondrial translat 98.9 1.4E-08 3.1E-13 82.4 10.9 106 36-159 201-315 (683)
244 cd04169 RF3 RF3 subfamily. Pe 98.9 7.5E-09 1.6E-13 78.9 8.9 72 31-106 66-137 (267)
245 cd01859 MJ1464 MJ1464. This f 98.9 3.5E-09 7.7E-14 74.3 6.1 93 51-160 4-96 (156)
246 PRK13768 GTPase; Provisional 98.9 8.9E-09 1.9E-13 78.0 7.4 121 37-160 98-247 (253)
247 cd01899 Ygr210 Ygr210 subfamil 98.9 3E-08 6.4E-13 77.4 10.5 56 92-161 214-270 (318)
248 KOG1707 Predicted Ras related/ 98.9 3.5E-08 7.5E-13 80.6 11.1 146 3-163 440-586 (625)
249 TIGR02034 CysN sulfate adenyly 98.9 6.2E-09 1.3E-13 83.9 6.9 107 35-150 79-187 (406)
250 KOG3886 GTP-binding protein [S 98.9 4.4E-09 9.5E-14 76.9 5.3 153 1-162 20-180 (295)
251 COG0486 ThdF Predicted GTPase 98.9 2.9E-08 6.2E-13 79.5 10.2 125 15-162 246-378 (454)
252 KOG1489 Predicted GTP-binding 98.8 6.3E-08 1.4E-12 74.0 11.5 107 37-157 245-364 (366)
253 PTZ00327 eukaryotic translatio 98.8 2.2E-08 4.8E-13 81.6 9.2 114 36-160 117-233 (460)
254 PRK12740 elongation factor G; 98.8 4.2E-08 9E-13 83.9 11.2 72 29-106 55-126 (668)
255 cd01886 EF-G Elongation factor 98.8 1.8E-08 3.9E-13 77.0 7.7 67 36-106 64-130 (270)
256 PRK05124 cysN sulfate adenylyl 98.8 1.7E-08 3.7E-13 82.8 7.0 109 34-151 105-216 (474)
257 COG2262 HflX GTPases [General 98.7 1.4E-07 3.1E-12 74.4 10.8 131 13-162 218-358 (411)
258 KOG0082 G-protein alpha subuni 98.7 5.3E-08 1.1E-12 76.1 8.1 150 11-164 162-348 (354)
259 cd01850 CDC_Septin CDC/Septin. 98.7 1E-07 2.2E-12 73.1 9.1 126 3-142 19-184 (276)
260 TIGR00484 EF-G translation elo 98.7 6.1E-08 1.3E-12 83.1 8.4 73 28-106 69-141 (689)
261 KOG0090 Signal recognition par 98.7 2.9E-07 6.4E-12 66.7 10.5 101 3-107 53-160 (238)
262 CHL00071 tufA elongation facto 98.7 7.7E-08 1.7E-12 77.7 8.5 104 34-148 73-181 (409)
263 PRK00049 elongation factor Tu; 98.7 1.6E-07 3.5E-12 75.5 10.0 114 34-158 73-201 (396)
264 PF09439 SRPRB: Signal recogni 98.7 8.8E-09 1.9E-13 73.7 2.3 102 4-107 19-127 (181)
265 KOG1144 Translation initiation 98.7 7.5E-08 1.6E-12 80.7 7.6 117 37-160 541-687 (1064)
266 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.3E-07 2.9E-12 66.4 7.9 91 55-159 4-94 (157)
267 cd04104 p47_IIGP_like p47 (47- 98.7 2.8E-07 6.1E-12 67.2 9.8 119 37-161 53-185 (197)
268 TIGR00503 prfC peptide chain r 98.7 1.1E-07 2.4E-12 78.9 8.2 74 29-106 73-146 (527)
269 PF00503 G-alpha: G-protein al 98.6 2E-07 4.3E-12 74.9 9.0 146 12-159 203-389 (389)
270 PRK05506 bifunctional sulfate 98.6 7.5E-08 1.6E-12 81.8 6.8 106 36-150 104-211 (632)
271 COG1217 TypA Predicted membran 98.6 5.9E-07 1.3E-11 72.0 10.7 118 31-162 63-197 (603)
272 PLN03126 Elongation factor Tu; 98.6 1.1E-07 2.3E-12 78.1 6.8 103 34-147 142-249 (478)
273 smart00010 small_GTPase Small 98.6 2.6E-07 5.7E-12 61.7 7.5 99 3-149 15-115 (124)
274 PLN03127 Elongation factor Tu; 98.6 5E-07 1.1E-11 73.7 10.1 118 31-159 119-251 (447)
275 PTZ00141 elongation factor 1- 98.6 2.1E-07 4.5E-12 75.9 7.8 110 32-150 81-203 (446)
276 cd04170 EF-G_bact Elongation f 98.6 4.6E-07 9.9E-12 69.2 9.2 68 35-106 63-130 (268)
277 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.6E-07 9.9E-12 62.6 6.7 77 55-147 7-84 (141)
278 cd01849 YlqF_related_GTPase Yl 98.5 8.7E-07 1.9E-11 62.1 8.2 82 61-159 1-84 (155)
279 TIGR00490 aEF-2 translation el 98.5 2.1E-07 4.5E-12 80.2 5.2 85 18-106 67-152 (720)
280 PRK13796 GTPase YqeH; Provisio 98.4 1.5E-06 3.3E-11 69.2 9.2 85 57-158 66-157 (365)
281 PRK01889 GTPase RsgA; Reviewed 98.4 8.2E-06 1.8E-10 64.8 12.6 83 57-156 110-193 (356)
282 COG2895 CysN GTPases - Sulfate 98.4 1.4E-06 3E-11 67.7 7.4 107 34-149 84-192 (431)
283 cd01856 YlqF YlqF. Proteins o 98.4 5.3E-07 1.2E-11 64.3 4.4 88 53-159 13-100 (171)
284 COG1163 DRG Predicted GTPase [ 98.4 2.3E-05 5E-10 60.5 13.3 109 33-159 107-288 (365)
285 PRK12739 elongation factor G; 98.4 1.1E-06 2.4E-11 75.5 6.9 73 28-106 67-139 (691)
286 COG0218 Predicted GTPase [Gene 98.3 8.8E-06 1.9E-10 58.7 10.2 108 38-160 72-197 (200)
287 COG0370 FeoB Fe2+ transport sy 98.3 8.5E-06 1.8E-10 68.3 11.3 115 31-163 45-167 (653)
288 TIGR00101 ureG urease accessor 98.3 1.3E-05 2.9E-10 58.5 10.9 104 36-160 92-196 (199)
289 COG1084 Predicted GTPase [Gene 98.3 6.7E-06 1.5E-10 63.4 9.6 123 26-162 202-338 (346)
290 COG5256 TEF1 Translation elong 98.3 3.8E-06 8.3E-11 66.5 8.0 112 31-150 80-201 (428)
291 COG0536 Obg Predicted GTPase [ 98.2 2.5E-05 5.4E-10 60.7 11.4 115 37-162 208-335 (369)
292 KOG1423 Ras-like GTPase ERA [C 98.2 5.7E-06 1.2E-10 63.3 7.8 127 33-162 117-273 (379)
293 TIGR03596 GTPase_YlqF ribosome 98.2 6.2E-06 1.3E-10 63.3 8.2 88 54-160 16-103 (276)
294 COG1162 Predicted GTPases [Gen 98.2 4.1E-05 8.9E-10 58.8 12.2 97 48-158 68-165 (301)
295 PF03029 ATP_bind_1: Conserved 98.2 2E-06 4.2E-11 64.6 4.7 123 37-159 92-236 (238)
296 TIGR00073 hypB hydrogenase acc 98.1 4.4E-05 9.5E-10 56.1 10.5 102 36-158 103-205 (207)
297 PRK09563 rbgA GTPase YlqF; Rev 98.1 1.4E-05 3E-10 61.7 8.0 88 54-160 19-106 (287)
298 PRK00007 elongation factor G; 98.1 1.2E-05 2.5E-10 69.3 7.3 73 28-106 69-141 (693)
299 COG4917 EutP Ethanolamine util 98.0 1.2E-05 2.6E-10 53.7 4.6 99 40-157 41-143 (148)
300 PRK09435 membrane ATPase/prote 98.0 9.4E-05 2E-09 58.1 10.4 106 35-159 148-259 (332)
301 COG4108 PrfC Peptide chain rel 98.0 3.6E-05 7.8E-10 61.6 8.0 76 27-106 72-147 (528)
302 KOG0468 U5 snRNP-specific prot 97.9 1.8E-05 3.8E-10 66.2 5.5 70 32-105 193-262 (971)
303 COG5257 GCD11 Translation init 97.9 2.5E-05 5.4E-10 60.3 5.6 118 36-163 86-205 (415)
304 PRK09602 translation-associate 97.9 0.00011 2.3E-09 59.3 9.6 53 92-159 217-270 (396)
305 PF06858 NOG1: Nucleolar GTP-b 97.9 5.4E-05 1.2E-09 43.5 5.5 44 59-103 13-58 (58)
306 KOG1532 GTPase XAB1, interacts 97.9 0.0002 4.4E-09 54.3 9.9 123 35-159 115-263 (366)
307 COG3276 SelB Selenocysteine-sp 97.9 0.00011 2.5E-09 58.8 9.0 109 35-160 49-162 (447)
308 PLN00116 translation elongatio 97.9 1.6E-05 3.6E-10 69.7 4.6 68 34-105 96-163 (843)
309 PTZ00416 elongation factor 2; 97.8 1.8E-05 3.9E-10 69.4 4.3 67 35-105 91-157 (836)
310 PRK07560 elongation factor EF- 97.8 2.9E-05 6.2E-10 67.3 4.8 71 32-106 83-153 (731)
311 COG3596 Predicted GTPase [Gene 97.8 8.2E-05 1.8E-09 56.3 6.4 123 36-160 87-222 (296)
312 KOG1490 GTP-binding protein CR 97.8 0.0001 2.2E-09 60.0 7.2 118 34-162 213-343 (620)
313 PF05783 DLIC: Dynein light in 97.8 0.00075 1.6E-08 55.5 12.2 155 3-161 40-265 (472)
314 KOG0461 Selenocysteine-specifi 97.8 0.00014 3E-09 56.9 7.4 121 32-165 66-198 (522)
315 COG0480 FusA Translation elong 97.7 6E-05 1.3E-09 64.5 5.8 74 29-107 70-143 (697)
316 PF01926 MMR_HSR1: 50S ribosom 97.7 0.00022 4.8E-09 47.2 7.5 68 27-101 40-116 (116)
317 KOG1191 Mitochondrial GTPase [ 97.7 0.00023 5E-09 57.8 7.7 129 19-160 301-450 (531)
318 KOG0099 G protein subunit Galp 97.6 0.00012 2.5E-09 55.1 5.2 90 14-106 172-283 (379)
319 cd01852 AIG1 AIG1 (avrRpt2-ind 97.5 0.0021 4.6E-08 46.7 10.6 122 30-161 45-185 (196)
320 KOG0458 Elongation factor 1 al 97.5 0.00038 8.2E-09 57.6 7.1 117 27-151 246-373 (603)
321 TIGR00750 lao LAO/AO transport 97.5 0.0009 1.9E-08 52.1 8.9 104 35-159 126-237 (300)
322 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00071 1.5E-08 50.4 7.5 98 35-146 82-182 (225)
323 KOG3887 Predicted small GTPase 97.4 0.00082 1.8E-08 50.2 7.2 123 34-162 73-204 (347)
324 COG5258 GTPBP1 GTPase [General 97.4 0.001 2.3E-08 52.7 7.9 116 37-156 202-335 (527)
325 KOG3905 Dynein light intermedi 97.2 0.0042 9E-08 48.4 9.1 126 34-161 98-291 (473)
326 KOG0085 G protein subunit Galp 97.1 0.00015 3.2E-09 53.7 0.4 147 14-162 169-351 (359)
327 PF00350 Dynamin_N: Dynamin fa 97.0 0.00092 2E-08 47.1 3.9 63 37-102 102-168 (168)
328 TIGR00991 3a0901s02IAP34 GTP-b 96.9 0.0061 1.3E-07 47.5 7.8 73 31-106 83-167 (313)
329 KOG1143 Predicted translation 96.8 0.017 3.6E-07 46.0 9.8 111 37-151 250-379 (591)
330 TIGR02836 spore_IV_A stage IV 96.8 0.011 2.3E-07 48.0 8.4 86 57-157 141-234 (492)
331 COG0050 TufB GTPases - transla 96.7 0.0069 1.5E-07 46.6 6.5 98 37-144 76-177 (394)
332 cd04178 Nucleostemin_like Nucl 96.6 0.0056 1.2E-07 43.7 5.2 44 61-106 1-44 (172)
333 cd03110 Fer4_NifH_child This p 96.6 0.016 3.5E-07 41.3 7.6 82 34-134 91-172 (179)
334 KOG0460 Mitochondrial translat 96.5 0.011 2.3E-07 46.4 6.5 96 40-145 121-223 (449)
335 PRK10463 hydrogenase nickel in 96.5 0.009 1.9E-07 46.1 5.9 57 92-158 230-287 (290)
336 smart00053 DYNc Dynamin, GTPas 96.4 0.0081 1.8E-07 45.2 5.1 68 36-106 125-206 (240)
337 KOG0465 Mitochondrial elongati 96.4 0.0062 1.3E-07 51.0 4.8 70 35-108 103-172 (721)
338 KOG1486 GTP-binding protein DR 96.3 0.23 4.9E-06 37.7 12.1 38 120-160 251-288 (364)
339 cd01853 Toc34_like Toc34-like 96.2 0.071 1.5E-06 40.4 9.7 75 30-108 75-165 (249)
340 KOG0467 Translation elongation 96.2 0.0081 1.8E-07 51.5 4.9 67 31-104 67-136 (887)
341 COG0378 HypB Ni2+-binding GTPa 96.2 0.016 3.4E-07 42.0 5.5 103 36-159 97-200 (202)
342 COG1161 Predicted GTPases [Gen 95.9 0.0081 1.7E-07 47.2 3.2 93 43-153 17-110 (322)
343 KOG0464 Elongation factor G [T 95.8 0.0017 3.7E-08 52.1 -0.7 75 29-107 95-169 (753)
344 KOG1424 Predicted GTP-binding 95.6 0.04 8.7E-07 45.4 6.1 71 56-144 171-244 (562)
345 COG1703 ArgK Putative periplas 95.2 0.25 5.5E-06 38.3 9.1 106 35-159 143-253 (323)
346 KOG0463 GTP-binding protein GP 95.2 0.18 4E-06 40.4 8.3 66 36-108 219-289 (641)
347 PF03308 ArgK: ArgK protein; 94.8 0.089 1.9E-06 40.0 5.5 99 36-158 122-228 (266)
348 KOG2484 GTPase [General functi 94.7 0.027 5.8E-07 45.1 2.7 56 48-106 135-191 (435)
349 PF11111 CENP-M: Centromere pr 94.7 0.7 1.5E-05 32.9 9.5 90 58-159 63-152 (176)
350 KOG1954 Endocytosis/signaling 94.7 0.066 1.4E-06 42.7 4.7 67 37-106 148-225 (532)
351 KOG0466 Translation initiation 94.4 0.04 8.8E-07 42.8 3.1 112 37-162 126-243 (466)
352 PF04548 AIG1: AIG1 family; I 94.2 0.24 5.2E-06 36.5 6.8 122 29-162 44-188 (212)
353 KOG2423 Nucleolar GTPase [Gene 94.1 0.31 6.8E-06 39.3 7.5 83 57-153 211-293 (572)
354 PF05049 IIGP: Interferon-indu 94.0 0.24 5.2E-06 39.8 6.7 113 37-160 87-218 (376)
355 KOG4273 Uncharacterized conser 93.9 0.18 3.9E-06 38.2 5.4 47 57-106 76-123 (418)
356 KOG0459 Polypeptide release fa 93.5 0.14 3.1E-06 41.2 4.5 112 35-152 156-278 (501)
357 KOG2486 Predicted GTPase [Gene 93.4 0.022 4.7E-07 43.6 -0.0 111 37-157 184-313 (320)
358 cd02038 FleN-like FleN is a me 93.3 0.35 7.6E-06 33.0 5.8 66 36-105 45-110 (139)
359 KOG0469 Elongation factor 2 [T 93.1 0.14 2.9E-06 42.6 4.0 70 32-105 94-163 (842)
360 PTZ00258 GTP-binding protein; 92.8 1.2 2.7E-05 36.0 9.0 35 36-70 85-126 (390)
361 PF14331 ImcF-related_N: ImcF- 92.6 0.26 5.6E-06 37.8 4.8 95 58-161 24-132 (266)
362 KOG0448 Mitofusin 1 GTPase, in 92.1 0.75 1.6E-05 39.6 7.2 67 37-107 207-276 (749)
363 COG1149 MinD superfamily P-loo 91.5 1.5 3.3E-05 33.6 7.7 78 36-135 164-241 (284)
364 PF00735 Septin: Septin; Inte 91.2 3.3 7.1E-05 32.0 9.5 74 28-106 55-156 (281)
365 KOG3929 Uncharacterized conser 89.1 0.73 1.6E-05 35.2 4.2 41 35-75 91-135 (363)
366 PHA02518 ParA-like protein; Pr 88.8 1.8 4E-05 31.3 6.2 67 35-104 76-145 (211)
367 PRK13505 formate--tetrahydrofo 88.1 5.5 0.00012 33.7 9.0 71 74-160 357-429 (557)
368 TIGR00064 ftsY signal recognit 87.7 2.5 5.4E-05 32.5 6.5 94 35-152 154-260 (272)
369 COG3640 CooC CO dehydrogenase 87.5 4.7 0.0001 30.4 7.5 62 37-104 135-197 (255)
370 KOG1487 GTP-binding protein DR 87.4 5.3 0.00012 30.7 7.8 44 36-79 106-156 (358)
371 COG5019 CDC3 Septin family pro 85.7 12 0.00027 30.0 9.3 85 18-107 63-177 (373)
372 TIGR00993 3a0901s04IAP86 chlor 85.4 13 0.00028 32.6 9.9 72 31-106 163-250 (763)
373 cd03111 CpaE_like This protein 84.9 3.3 7.2E-05 26.8 5.1 61 37-101 44-106 (106)
374 PRK14974 cell division protein 84.8 8.3 0.00018 30.7 8.2 101 36-160 223-334 (336)
375 PRK10416 signal recognition pa 84.8 4.9 0.00011 31.7 6.9 102 35-160 196-314 (318)
376 cd02036 MinD Bacterial cell di 81.8 13 0.00028 25.9 7.6 64 37-105 64-127 (179)
377 COG4963 CpaE Flp pilus assembl 81.5 4.3 9.3E-05 32.6 5.4 68 35-106 217-285 (366)
378 KOG0410 Predicted GTP binding 80.5 4.1 8.9E-05 32.3 4.8 102 37-161 227-342 (410)
379 TIGR03371 cellulose_yhjQ cellu 79.6 14 0.00031 27.3 7.6 66 37-105 116-181 (246)
380 KOG0447 Dynamin-like GTP bindi 79.3 5.2 0.00011 34.1 5.3 70 37-108 413-495 (980)
381 PF14606 Lipase_GDSL_3: GDSL-l 77.3 1.8 4E-05 31.0 2.0 59 41-99 39-100 (178)
382 cd02037 MRP-like MRP (Multiple 76.2 23 0.00051 24.6 7.9 90 35-134 67-159 (169)
383 TIGR01969 minD_arch cell divis 75.3 31 0.00066 25.5 8.7 65 35-105 108-173 (251)
384 COG5192 BMS1 GTP-binding prote 73.9 8.2 0.00018 33.1 5.1 94 1-108 86-179 (1077)
385 PF03709 OKR_DC_1_N: Orn/Lys/A 73.7 13 0.00027 24.5 5.2 40 59-102 38-77 (115)
386 PF01656 CbiA: CobQ/CobB/MinD/ 73.7 7.8 0.00017 27.4 4.5 67 36-106 95-162 (195)
387 TIGR01425 SRP54_euk signal rec 73.0 12 0.00026 30.8 5.9 66 35-106 182-253 (429)
388 cd03112 CobW_like The function 72.5 6.6 0.00014 27.4 3.8 64 36-104 87-158 (158)
389 COG1908 FrhD Coenzyme F420-red 72.1 10 0.00022 25.4 4.3 65 93-161 55-123 (132)
390 TIGR01007 eps_fam capsular exo 71.0 12 0.00025 27.1 5.0 67 35-106 127-194 (204)
391 PRK13185 chlL protochlorophyll 68.3 25 0.00055 26.6 6.5 66 35-103 117-185 (270)
392 cd03114 ArgK-like The function 68.1 16 0.00035 25.1 5.0 58 35-103 91-148 (148)
393 KOG2485 Conserved ATP/GTP bind 68.1 15 0.00032 29.0 5.1 46 55-106 42-87 (335)
394 PF08438 MMR_HSR1_C: GTPase of 67.5 9.5 0.00021 25.1 3.4 32 98-143 1-32 (109)
395 TIGR03348 VI_IcmF type VI secr 67.1 11 0.00023 35.3 4.8 69 38-106 163-257 (1169)
396 TIGR01968 minD_bact septum sit 66.6 29 0.00063 25.8 6.5 65 35-104 111-175 (261)
397 KOG2655 Septin family protein 65.9 70 0.0015 25.9 8.9 74 29-107 72-173 (366)
398 cd02032 Bchl_like This family 65.3 26 0.00056 26.5 6.0 67 35-104 115-184 (267)
399 CHL00175 minD septum-site dete 65.0 33 0.00071 26.2 6.6 65 35-104 126-190 (281)
400 PF09419 PGP_phosphatase: Mito 64.8 48 0.001 23.6 9.3 67 76-156 62-128 (168)
401 PRK00771 signal recognition pa 64.0 43 0.00093 27.8 7.3 83 37-141 177-266 (437)
402 PF09547 Spore_IV_A: Stage IV 62.8 69 0.0015 26.7 8.1 81 62-157 148-234 (492)
403 COG0523 Putative GTPases (G3E 62.7 46 0.001 26.4 7.1 99 36-152 85-193 (323)
404 COG0012 Predicted GTPase, prob 62.6 22 0.00048 28.7 5.2 37 34-70 65-108 (372)
405 TIGR00640 acid_CoA_mut_C methy 62.2 46 0.001 22.5 7.7 95 38-159 31-127 (132)
406 cd02117 NifH_like This family 59.9 64 0.0014 23.4 9.5 84 35-134 116-203 (212)
407 cd01900 YchF YchF subfamily. 58.6 6.5 0.00014 30.3 1.6 35 36-70 62-103 (274)
408 PF03193 DUF258: Protein of un 57.9 31 0.00067 24.4 4.8 33 124-157 3-35 (161)
409 cd02067 B12-binding B12 bindin 57.7 24 0.00053 23.0 4.2 38 64-102 53-91 (119)
410 cd02042 ParA ParA and ParB of 56.9 38 0.00083 21.2 4.9 45 36-84 40-84 (104)
411 PF02492 cobW: CobW/HypB/UreG, 55.2 21 0.00046 25.3 3.8 65 37-106 86-155 (178)
412 cd07379 MPP_239FB Homo sapiens 54.3 49 0.0011 22.0 5.4 57 38-101 3-60 (135)
413 TIGR01281 DPOR_bchL light-inde 53.9 71 0.0015 24.1 6.7 67 35-104 115-184 (268)
414 TIGR00959 ffh signal recogniti 53.8 73 0.0016 26.4 7.0 86 35-141 182-273 (428)
415 PF12098 DUF3574: Protein of u 53.2 61 0.0013 21.1 6.5 58 38-97 38-95 (104)
416 cd02033 BchX Chlorophyllide re 51.3 1.2E+02 0.0027 24.1 9.0 68 36-104 148-219 (329)
417 PF12317 IFT46_B_C: Intraflage 50.9 24 0.00051 26.1 3.4 81 11-91 39-130 (214)
418 cd03115 SRP The signal recogni 50.6 83 0.0018 21.8 7.1 65 36-106 83-153 (173)
419 PF14784 ECIST_Cterm: C-termin 49.5 36 0.00078 23.0 3.9 38 59-97 83-123 (126)
420 PF10087 DUF2325: Uncharacteri 48.8 60 0.0013 20.4 4.8 42 51-98 40-81 (97)
421 cd00477 FTHFS Formyltetrahydro 48.5 1.5E+02 0.0032 25.3 7.9 69 76-160 343-413 (524)
422 CHL00072 chlL photochlorophyll 47.9 95 0.0021 24.0 6.6 123 35-162 115-246 (290)
423 PRK09601 GTP-binding protein Y 47.8 49 0.0011 26.7 5.1 35 36-70 66-107 (364)
424 PRK10818 cell division inhibit 47.3 1E+02 0.0022 23.3 6.6 67 35-105 113-186 (270)
425 TIGR03029 EpsG chain length de 46.8 43 0.00093 25.4 4.5 61 35-100 212-273 (274)
426 COG4502 5'(3')-deoxyribonucleo 46.6 50 0.0011 23.0 4.2 43 59-102 83-125 (180)
427 KOG1249 Predicted GTPases [Gen 46.4 30 0.00065 29.4 3.7 87 58-159 109-210 (572)
428 PRK13849 putative crown gall t 45.5 47 0.001 24.8 4.4 65 35-103 83-151 (231)
429 PRK13507 formate--tetrahydrofo 45.4 1.7E+02 0.0036 25.3 7.9 65 81-160 392-458 (587)
430 cd04170 EF-G_bact Elongation f 44.9 44 0.00096 25.3 4.4 27 133-159 239-265 (268)
431 PRK10867 signal recognition pa 44.8 1.2E+02 0.0026 25.2 7.0 85 35-141 183-274 (433)
432 COG1512 Beta-propeller domains 44.0 72 0.0016 24.6 5.3 103 58-165 62-167 (271)
433 PRK12727 flagellar biosynthesi 41.9 1.4E+02 0.003 25.7 7.0 91 35-149 428-524 (559)
434 KOG1432 Predicted DNA repair e 41.8 1.3E+02 0.0028 24.3 6.3 50 57-106 98-149 (379)
435 COG1010 CobJ Precorrin-3B meth 41.0 79 0.0017 24.0 4.9 45 57-102 152-197 (249)
436 PRK09601 GTP-binding protein Y 40.7 34 0.00074 27.6 3.2 41 92-143 199-240 (364)
437 KOG1547 Septin CDC10 and relat 40.7 1.7E+02 0.0037 22.6 9.1 75 27-105 95-197 (336)
438 PF00448 SRP54: SRP54-type pro 39.2 1.4E+02 0.003 21.7 6.0 89 36-148 84-179 (196)
439 PF00072 Response_reg: Respons 38.5 49 0.0011 20.6 3.3 41 59-104 43-83 (112)
440 PLN02759 Formate--tetrahydrofo 38.0 2.3E+02 0.0051 24.7 7.7 64 83-160 443-508 (637)
441 PF12327 FtsZ_C: FtsZ family, 37.2 1.1E+02 0.0024 19.3 5.3 53 51-104 27-79 (95)
442 TIGR03815 CpaE_hom_Actino heli 37.0 1.5E+02 0.0032 23.2 6.3 62 35-102 204-265 (322)
443 PRK13506 formate--tetrahydrofo 36.8 2.8E+02 0.0061 24.0 8.1 64 82-160 385-451 (578)
444 PF01268 FTHFS: Formate--tetra 36.5 48 0.001 28.3 3.5 69 75-159 357-427 (557)
445 PRK11537 putative GTP-binding 35.9 1.1E+02 0.0025 24.0 5.4 65 37-106 92-164 (318)
446 cd00959 DeoC 2-deoxyribose-5-p 35.1 1.8E+02 0.0038 21.1 6.7 69 58-141 81-151 (203)
447 cd02035 ArsA ArsA ATPase funct 34.8 54 0.0012 24.0 3.3 67 36-105 114-183 (217)
448 cd02071 MM_CoA_mut_B12_BD meth 34.4 1.1E+02 0.0023 20.2 4.4 41 59-102 50-91 (122)
449 COG2759 MIS1 Formyltetrahydrof 34.3 2.9E+02 0.0063 23.4 7.7 65 82-161 361-427 (554)
450 PRK12726 flagellar biosynthesi 33.5 1.6E+02 0.0034 24.3 5.8 103 36-161 286-399 (407)
451 PRK06731 flhF flagellar biosyn 33.0 2.3E+02 0.0049 21.8 7.0 92 35-150 154-252 (270)
452 TIGR01005 eps_transp_fam exopo 32.9 74 0.0016 28.2 4.4 67 35-106 655-722 (754)
453 PTZ00386 formyl tetrahydrofola 32.5 3.4E+02 0.0074 23.7 8.1 65 82-160 429-496 (625)
454 TIGR02016 BchX chlorophyllide 31.4 2.5E+02 0.0054 21.8 8.6 69 35-104 122-194 (296)
455 PRK14723 flhF flagellar biosyn 31.3 3.2E+02 0.0068 24.7 7.7 105 36-161 264-380 (767)
456 TIGR00381 cdhD CO dehydrogenas 31.1 3E+02 0.0065 22.6 7.5 43 58-100 152-196 (389)
457 KOG0861 SNARE protein YKT6, sy 31.1 35 0.00076 24.5 1.7 12 168-179 187-198 (198)
458 PF06490 FleQ: Flagellar regul 30.5 1.5E+02 0.0033 19.1 4.6 24 81-104 58-81 (109)
459 cd01844 SGNH_hydrolase_like_6 30.1 1.9E+02 0.0041 20.0 5.6 43 59-102 57-103 (177)
460 PF12989 DUF3873: Domain of un 29.9 1.3E+02 0.0028 18.0 4.1 45 29-77 4-49 (69)
461 PF02310 B12-binding: B12 bind 29.5 1.6E+02 0.0034 18.9 4.6 63 36-103 29-92 (121)
462 KOG2961 Predicted hydrolase (H 29.1 2.1E+02 0.0046 20.3 5.5 55 91-157 78-132 (190)
463 KOG2052 Activin A type IB rece 28.2 1.5E+02 0.0033 24.9 5.0 48 37-85 212-259 (513)
464 COG3523 IcmF Type VI protein s 26.4 1.3E+02 0.0029 28.4 4.8 50 57-106 212-270 (1188)
465 KOG0052 Translation elongation 26.3 1.7E+02 0.0036 24.0 4.9 75 32-107 78-157 (391)
466 cd01886 EF-G Elongation factor 25.6 1.2E+02 0.0026 23.2 3.9 26 134-159 242-267 (270)
467 PF11288 DUF3089: Protein of u 25.6 1.3E+02 0.0029 22.2 3.9 52 52-103 48-105 (207)
468 PF09827 CRISPR_Cas2: CRISPR a 25.5 87 0.0019 18.7 2.6 17 62-78 3-19 (78)
469 PRK15029 arginine decarboxylas 24.8 1.5E+02 0.0033 26.5 4.8 45 59-104 53-97 (755)
470 PRK05096 guanosine 5'-monophos 24.6 1.6E+02 0.0035 23.6 4.4 40 60-102 121-160 (346)
471 TIGR03018 pepcterm_TyrKin exop 24.0 2E+02 0.0043 20.7 4.7 48 37-87 150-197 (207)
472 KOG0639 Transducin-like enhanc 23.5 1.1E+02 0.0023 26.1 3.4 44 30-73 481-542 (705)
473 PF00255 GSHPx: Glutathione pe 22.8 2.3E+02 0.005 18.5 5.0 54 93-155 52-107 (108)
474 PF07764 Omega_Repress: Omega 22.8 67 0.0015 18.7 1.5 20 141-160 44-63 (71)
475 cd01820 PAF_acetylesterase_lik 22.2 3.1E+02 0.0067 19.7 5.7 42 59-100 89-136 (214)
476 cd04506 SGNH_hydrolase_YpmR_li 22.1 2.9E+02 0.0064 19.5 5.5 43 58-100 67-129 (204)
477 COG1358 RPL8A Ribosomal protei 22.0 1.3E+02 0.0028 20.0 3.0 41 59-105 43-83 (116)
478 cd00954 NAL N-Acetylneuraminic 22.0 3.7E+02 0.0081 20.6 7.6 60 58-130 95-154 (288)
479 PF08309 LVIVD: LVIVD repeat; 21.8 62 0.0013 17.1 1.2 20 56-75 15-34 (42)
480 cd04169 RF3 RF3 subfamily. Pe 21.6 1.6E+02 0.0034 22.5 3.9 26 134-159 239-264 (267)
481 COG5400 Uncharacterized protei 21.6 1E+02 0.0022 22.1 2.5 17 59-75 131-147 (205)
482 cd01851 GBP Guanylate-binding 21.5 1.8E+02 0.0038 21.5 4.0 71 3-73 22-105 (224)
483 KOG4102 Uncharacterized conser 21.4 36 0.00079 22.6 0.3 11 168-178 57-67 (121)
484 PF05014 Nuc_deoxyrib_tr: Nucl 21.1 2.4E+02 0.0052 18.1 4.4 44 56-104 58-101 (113)
485 PF07491 PPI_Ypi1: Protein pho 21.0 40 0.00087 19.6 0.4 10 169-178 32-41 (60)
486 cd07388 MPP_Tt1561 Thermus the 20.7 1.5E+02 0.0032 22.1 3.5 64 37-104 7-74 (224)
487 PF00478 IMPDH: IMP dehydrogen 20.6 2E+02 0.0044 23.2 4.4 38 60-100 119-156 (352)
488 PF01251 Ribosomal_S7e: Riboso 20.4 3.1E+02 0.0067 20.0 4.8 46 61-106 54-99 (189)
489 TIGR00126 deoC deoxyribose-pho 20.3 3.7E+02 0.0079 19.9 7.1 70 58-142 82-153 (211)
490 cd02070 corrinoid_protein_B12- 20.1 2.2E+02 0.0049 20.5 4.3 39 59-100 133-173 (201)
491 KOG1201 Hydroxysteroid 17-beta 20.0 2.3E+02 0.005 22.3 4.4 61 36-105 63-125 (300)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-40 Score=230.22 Aligned_cols=148 Identities=33% Similarity=0.614 Sum_probs=139.4
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
|+.||..+.|.+.|..|||+.|. +++.++|+.++++||||+|||||+++...||++|||+|+|||+++.+||+++ ..|
T Consensus 25 L~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v-~~W 103 (205)
T KOG0084|consen 25 LLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNV-KRW 103 (205)
T ss_pred hhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhH-HHH
Confidence 67899999999999999997775 9999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+.+++++. .++|.+|||||+|+.+... ++.++++.++..++++.++|+||+++.||+++|..+...+.+
T Consensus 104 i~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 104 IQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred HHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 99999998 6889999999999987664 999999999999999559999999999999999999998865
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 174 ~ 174 (205)
T KOG0084|consen 174 R 174 (205)
T ss_pred h
Confidence 4
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-38 Score=221.34 Aligned_cols=149 Identities=31% Similarity=0.549 Sum_probs=138.4
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
||+.||+.|.|.+...||||..| .+++.+++..++++||||+|||+|.++.+.||++|+++|+|||+++.+||..+ ..
T Consensus 20 SlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~a-K~ 98 (200)
T KOG0092|consen 20 SLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKA-KN 98 (200)
T ss_pred hhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHH-HH
Confidence 68999999999999999999555 59999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+++.. +++-|.|||||+|+.+.+ .+..+++..+++..|. .|+|+||++|.||+++|..|.+.+.
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R----------~V~~~ea~~yAe~~gl-l~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERR----------EVEFEEAQAYAESQGL-LFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcc----------cccHHHHHHHHHhcCC-EEEEEecccccCHHHHHHHHHHhcc
Confidence 999999887 567788999999997754 4999999999999999 8999999999999999999999987
Q ss_pred CCc
Q 030337 161 QPP 163 (179)
Q Consensus 161 ~~~ 163 (179)
...
T Consensus 168 ~~~ 170 (200)
T KOG0092|consen 168 CSD 170 (200)
T ss_pred Ccc
Confidence 644
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.7e-36 Score=220.33 Aligned_cols=172 Identities=49% Similarity=0.850 Sum_probs=143.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.||+.+.|.++|.||+|+.+.+.+.++++.+.++||||+|+++|..+++.+++++|++|+|||++++.||+.+...|
T Consensus 18 sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 18 CLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred HHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57899999999999999999888877888999999999999999999999999999999999999999999999995579
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+....+++|++|||||.|+.+..... ......+.++.+++..+++..+...++|+||++|.||+++|+++++.++
T Consensus 98 ~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 98 HPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 88887766789999999999996532100 0001123467788999999998658999999999999999999999998
Q ss_pred CCchhhhhccCCCCCcccC
Q 030337 161 QPPKQKKKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~~~~~~~~~~~~~c~~~ 179 (179)
.+.. .+ ++.+|.||
T Consensus 178 ~~~~--~~---~~~~c~~~ 191 (191)
T cd01875 178 NPTP--IK---DTKSCVLL 191 (191)
T ss_pred cccc--cc---CCCCceeC
Confidence 7542 22 12259887
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=216.39 Aligned_cols=151 Identities=28% Similarity=0.534 Sum_probs=140.3
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
.|+.||..+.|...+..|+|..| .+++.+++..+.++||||+|||+|+.+..+|+++|.++++|||+++..||+++ ..
T Consensus 27 ~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni-~~ 105 (207)
T KOG0078|consen 27 CLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI-RN 105 (207)
T ss_pred HhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH-HH
Confidence 47899999999999999999655 49999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHhhcCC-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|++.++++.+ ++|++|||||+|+..++ +++.++++.+|.++|+ .|+|+||++|.||+++|..|++.++
T Consensus 106 W~~~I~e~a~~~v~~~LvGNK~D~~~~R----------~V~~e~ge~lA~e~G~-~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 106 WIKNIDEHASDDVVKILVGNKCDLEEKR----------QVSKERGEALAREYGI-KFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHHHhhCCCCCcEEEeeccccccccc----------cccHHHHHHHHHHhCC-eEEEccccCCCCHHHHHHHHHHHHH
Confidence 9999999984 89999999999997644 5999999999999999 8999999999999999999999998
Q ss_pred CCchh
Q 030337 161 QPPKQ 165 (179)
Q Consensus 161 ~~~~~ 165 (179)
.+...
T Consensus 175 ~k~~~ 179 (207)
T KOG0078|consen 175 QKLED 179 (207)
T ss_pred hhcch
Confidence 64433
No 5
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=8.2e-36 Score=213.89 Aligned_cols=160 Identities=83% Similarity=1.254 Sum_probs=140.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.||+++.|.++|.||+|+.+.+.+.+++..+.++||||+|+++|..+++.++++++++|+|||+++++||+++...|
T Consensus 16 sli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 16 CMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred HHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 58899999999999999999888888888999999999999999999999999999999999999999999999985689
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
+..+++..+++|++|||||+|+.++.......++.+.++.+++..+++..++..|+||||++|.||+++|+.+++.+.++
T Consensus 96 ~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 96 VPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcC
Confidence 99998777789999999999996543111122344568899999999999985699999999999999999999987654
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-36 Score=212.18 Aligned_cols=148 Identities=32% Similarity=0.526 Sum_probs=137.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.||..+.|+..|.+|||..| ++++.+.+..+++|+|||+|||+|+++.+.|++++.++|+|||++|..||++. ..
T Consensus 37 slItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t-~k 115 (221)
T KOG0094|consen 37 SLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENT-SK 115 (221)
T ss_pred HHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHH-HH
Confidence 68999999999999999999555 69999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-C-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|++.+.... + ++-|+|||||.||.+..+ ++.++++..+++++. .|+++||+.|.||.++|..+...+
T Consensus 116 Wi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 116 WIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred HHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhc
Confidence 999998877 3 588899999999987664 999999999999999 999999999999999999988877
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
...
T Consensus 185 ~~~ 187 (221)
T KOG0094|consen 185 PGM 187 (221)
T ss_pred cCc
Confidence 543
No 7
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-35 Score=219.62 Aligned_cols=160 Identities=33% Similarity=0.637 Sum_probs=138.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.++|.||+++.+.+.+.+++..+.++||||+|+++|..+++.++++++++|+|||++++.||+.+...|
T Consensus 28 sLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w 107 (232)
T cd04174 28 AMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW 107 (232)
T ss_pred HHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHH
Confidence 47889999999999999999888888889999999999999999999999999999999999999999999999865799
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccccccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC-cHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~l~~~i 159 (179)
+..+.+..++.|++|||||+|+..+..... .....++++.+++.++++.+++..|+||||++|. ||+++|..+++.+
T Consensus 108 ~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 108 KAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 999988777899999999999864211000 0012356899999999999998669999999997 8999999999987
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
++.
T Consensus 188 ~~~ 190 (232)
T cd04174 188 LNK 190 (232)
T ss_pred HHh
Confidence 654
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-36 Score=209.08 Aligned_cols=149 Identities=26% Similarity=0.452 Sum_probs=138.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
.|+.||+..+|.+.+..|+|..|- +.+++++++++++||||+|+|+|++....||+++.++++|||++.++||+.+ ..
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL-~~ 99 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHL-TS 99 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHH-HH
Confidence 378899999999999999998886 8889999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..++++. +++-++|+|||+|+... |+++.++++.||++.|+ .+.|+||+++.||+++|......++
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~r----------R~Vs~EEGeaFA~ehgL-ifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEAR----------REVSKEEGEAFAREHGL-IFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhcc----------ccccHHHHHHHHHHcCc-eeehhhhhhhhhHHHHHHHHHHHHH
Confidence 999999986 79999999999999654 46999999999999998 7999999999999999999988887
Q ss_pred CCc
Q 030337 161 QPP 163 (179)
Q Consensus 161 ~~~ 163 (179)
...
T Consensus 169 ~~~ 171 (216)
T KOG0098|consen 169 RKI 171 (216)
T ss_pred HHH
Confidence 543
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=204.85 Aligned_cols=152 Identities=30% Similarity=0.494 Sum_probs=138.9
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
||+.+|++..|...|..|||..| .|.+.++++.+.++||||+|||+|.++...+|+++|++++|||+.++.||+.+ ..
T Consensus 24 SLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L-~~ 102 (210)
T KOG0394|consen 24 SLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENL-EN 102 (210)
T ss_pred HHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccH-HH
Confidence 68899999999999999999555 59999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-C----CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 WIPELRHYA-P----GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~~~~i~~~~-~----~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
|.+++-.+. + .-|+||+|||+|+.... .+.++...++.||+..|..+|+|+|||+..||.++|+.+.
T Consensus 103 Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia 174 (210)
T KOG0394|consen 103 WRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIA 174 (210)
T ss_pred HHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHH
Confidence 988887665 2 58999999999997632 2579999999999999988999999999999999999999
Q ss_pred HHHhCCc
Q 030337 157 KVVLQPP 163 (179)
Q Consensus 157 ~~i~~~~ 163 (179)
+..+...
T Consensus 175 ~~aL~~E 181 (210)
T KOG0394|consen 175 RRALANE 181 (210)
T ss_pred HHHHhcc
Confidence 9887654
No 10
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.7e-36 Score=200.38 Aligned_cols=148 Identities=30% Similarity=0.522 Sum_probs=138.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|.++.|...|..|+|..+. +++.++|..++++||||+|+|+|+.+...|+++.|++++|||+++.+||.++ ..
T Consensus 23 sLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv-~r 101 (198)
T KOG0079|consen 23 SLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNV-KR 101 (198)
T ss_pred HHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhH-HH
Confidence 688999999999999999996665 8899999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|++.++.+++++|-++||||.|.++ .+.+..++++.|+..+|+ .++|+||+...|++..|.-|.++.++
T Consensus 102 WLeei~~ncdsv~~vLVGNK~d~~~----------RrvV~t~dAr~~A~~mgi-e~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 102 WLEEIRNNCDSVPKVLVGNKNDDPE----------RRVVDTEDARAFALQMGI-ELFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred HHHHHHhcCccccceecccCCCCcc----------ceeeehHHHHHHHHhcCc-hheehhhhhcccchHHHHHHHHHHHH
Confidence 9999999999999999999999955 446999999999999999 99999999999999999999888765
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 171 ~ 171 (198)
T KOG0079|consen 171 A 171 (198)
T ss_pred H
Confidence 4
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-34 Score=208.79 Aligned_cols=159 Identities=33% Similarity=0.664 Sum_probs=138.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.||+.+.|.++|.||+++.+.+.+.+++..+.++||||+|+++|..+++.++++++++|+|||++++.||+++...|
T Consensus 20 sli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w 99 (182)
T cd04172 20 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99 (182)
T ss_pred HHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57899999999999999999988888889999999999999999999999999999999999999999999999976789
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCc-HHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~~~f~~l~~~i 159 (179)
++.+++..++.|++|||||+|+..+.... ....+.++++.+++.++++.+++..|+||||++|.| |+++|+.+++.+
T Consensus 100 ~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 100 KGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 99998877889999999999996421100 000123468999999999999966899999999998 999999999876
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
++
T Consensus 180 ~~ 181 (182)
T cd04172 180 VN 181 (182)
T ss_pred hc
Confidence 54
No 12
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5e-35 Score=199.21 Aligned_cols=149 Identities=29% Similarity=0.566 Sum_probs=139.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
||+.||+++.|++....|||..|. +.+.+++..+++.||||+|||+|+.+.+.||++|.++|+|||++.+++|..+ +.
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL-d~ 104 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL-DI 104 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhH-HH
Confidence 689999999999999889997776 8999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+.++.-++ +++-.++||||+|...++ .++.+++..|++.+++ -|+|+||++..|++..|+.++..|
T Consensus 105 W~~Eld~Ystn~diikmlVgNKiDkes~R----------~V~reEG~kfAr~h~~-LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 105 WLKELDLYSTNPDIIKMLVGNKIDKESER----------VVDREEGLKFARKHRC-LFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred HHHHHHhhcCCccHhHhhhcccccchhcc----------cccHHHHHHHHHhhCc-EEEEcchhhhccHHHHHHHHHHHH
Confidence 999999887 578888999999986544 5999999999999999 799999999999999999999999
Q ss_pred hCCc
Q 030337 160 LQPP 163 (179)
Q Consensus 160 ~~~~ 163 (179)
++.+
T Consensus 174 i~tp 177 (209)
T KOG0080|consen 174 IETP 177 (209)
T ss_pred hcCc
Confidence 8755
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.2e-34 Score=208.65 Aligned_cols=149 Identities=28% Similarity=0.474 Sum_probs=136.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|.++.|.+++.||+|..+. +.+.+++..+.+++|||+|+++|..+++.++++++++|+|||++++.||+++ ..
T Consensus 21 sll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~-~~ 99 (189)
T cd04121 21 EILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DR 99 (189)
T ss_pred HHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 578999999999999999987664 6688899999999999999999999999999999999999999999999999 79
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|++.+....+++|++|||||.|+.+.. .++.++++.+++..++ .++||||++|.||+++|+++++.+..
T Consensus 100 w~~~i~~~~~~~piilVGNK~DL~~~~----------~v~~~~~~~~a~~~~~-~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 100 WIKEIDEHAPGVPKILVGNRLHLAFKR----------QVATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred HHHHHHHhCCCCCEEEEEECccchhcc----------CCCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 999998877889999999999996544 4888999999999998 89999999999999999999998875
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
..
T Consensus 169 ~~ 170 (189)
T cd04121 169 RH 170 (189)
T ss_pred hc
Confidence 43
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.6e-34 Score=204.22 Aligned_cols=158 Identities=32% Similarity=0.662 Sum_probs=137.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.++|.||+++.+.+.+.+++..+.++||||+|+++|..+++.++++++++|+|||++++.||+++...|
T Consensus 16 sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 16 ALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred HHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 57899999999999999999888888889999999999999999999999999999999999999999999999965789
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCc-HHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~~~f~~l~~~i 159 (179)
+..+++..++.|++|||||+|+.++.... ....+.++++.+++.++++.+++..|+||||++|.| |+++|..+++..
T Consensus 96 ~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 96 RGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred HHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 99999888889999999999996421100 000123468899999999999976899999999995 999999999965
Q ss_pred h
Q 030337 160 L 160 (179)
Q Consensus 160 ~ 160 (179)
+
T Consensus 176 ~ 176 (178)
T cd04131 176 L 176 (178)
T ss_pred h
Confidence 5
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5e-34 Score=208.66 Aligned_cols=148 Identities=29% Similarity=0.506 Sum_probs=133.4
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.||..+.|.++|.||+|..+ .+.+.++++.+.++||||+|+++|+.++..|+++++++|+|||++++.||+.+ ..
T Consensus 15 Sli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l-~~ 93 (202)
T cd04120 15 SLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PK 93 (202)
T ss_pred HHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 57899999999999999999665 47788999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+++.. .++|++|||||+|+..+. .++.+++.++++.. ++ .+++|||++|.||+++|+++++.+
T Consensus 94 w~~~i~~~~~~~~piilVgNK~DL~~~~----------~v~~~~~~~~a~~~~~~-~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 94 WMKMIDKYASEDAELLLVGNKLDCETDR----------EISRQQGEKFAQQITGM-RFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccccc----------ccCHHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHHHHHHHH
Confidence 999888765 579999999999996544 38888899999885 65 899999999999999999999988
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
...
T Consensus 163 ~~~ 165 (202)
T cd04120 163 LKK 165 (202)
T ss_pred HHh
Confidence 653
No 16
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=8e-34 Score=210.02 Aligned_cols=160 Identities=33% Similarity=0.650 Sum_probs=138.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|..+.|.++|.||+++.+.+.+.+++..+.++||||+|++.|..+++.+++++|++|+|||+++++||+++...|
T Consensus 16 sLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 16 ALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred HHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57899999999999999999998888889999999999999999999999999999999999999999999999997789
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccccccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCc-HHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~~~f~~l~~~i 159 (179)
...+....+++|++|||||+|+..+..... ......+++.+++..+++..++..|+||||+++.+ |+++|..++...
T Consensus 96 ~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 96 QGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 888877778899999999999965321000 00123468889999999999976899999999885 999999999977
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
+.+
T Consensus 176 ~~~ 178 (222)
T cd04173 176 LGR 178 (222)
T ss_pred Hhc
Confidence 653
No 17
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.9e-33 Score=204.05 Aligned_cols=173 Identities=38% Similarity=0.643 Sum_probs=145.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|..+.|.+.+.||+++.+.+.+.+++..+.++||||+|++.|..++..++++++++|+|||++++.||+.+...|
T Consensus 15 sli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~ 94 (189)
T cd04134 15 SLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKW 94 (189)
T ss_pred HHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57899999999999999999888877888888999999999999999999999999999999999999999999985579
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|++|||||+|+....... ........++.+++..+++..+...++++||++|.|++++|+++++.++
T Consensus 95 ~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 95 LGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 99998777789999999999997543210 0011222466778888888887558999999999999999999999887
Q ss_pred CCchhhhhccCCCCCcccC
Q 030337 161 QPPKQKKKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~~~~~~~~~~~~~c~~~ 179 (179)
.... ..+.+++|+||
T Consensus 175 ~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 175 NVRP----PHPHSSACTIA 189 (189)
T ss_pred cccc----cCcCCCcceeC
Confidence 5433 55566789987
No 18
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=204.62 Aligned_cols=147 Identities=30% Similarity=0.501 Sum_probs=137.9
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
|+-||..+.|..+..+|||..+. .++.++++.++.+||||+|||+|+.....||++|.|+++|||++...+|+++ .+|
T Consensus 30 LlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv-~rW 108 (222)
T KOG0087|consen 30 LLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENV-ERW 108 (222)
T ss_pred HHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHH-HHH
Confidence 67899999999999999997775 7888999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+.+++.+. ++++++|||||+||.+.+ +++.+++..+++..++ .++|+||+++.|++++|+.++..|..
T Consensus 109 L~ELRdhad~nivimLvGNK~DL~~lr----------aV~te~~k~~Ae~~~l-~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 109 LKELRDHADSNIVIMLVGNKSDLNHLR----------AVPTEDGKAFAEKEGL-FFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred HHHHHhcCCCCeEEEEeecchhhhhcc----------ccchhhhHhHHHhcCc-eEEEecccccccHHHHHHHHHHHHHH
Confidence 99999998 799999999999998754 5999999999999998 89999999999999999999988765
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 178 ~ 178 (222)
T KOG0087|consen 178 I 178 (222)
T ss_pred H
Confidence 3
No 19
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=8.3e-34 Score=202.59 Aligned_cols=162 Identities=58% Similarity=0.960 Sum_probs=149.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+..|..+.|.++|.||+-++|...+.++ ++.+.+.+|||+|||.|..+++.-|.++|+++++|++.++.||+++...
T Consensus 19 ~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 19 CLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred EEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 688999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCccccccc--ccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+++++.+++++|+||||+|.|+..+... ...+.+..+++.+++..+++..|...|+||||+++.|+.++|+..++..
T Consensus 99 W~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 99 WIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred hhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 99999999999999999999999854321 1334566789999999999999988999999999999999999999999
Q ss_pred hCCch
Q 030337 160 LQPPK 164 (179)
Q Consensus 160 ~~~~~ 164 (179)
+...+
T Consensus 179 l~~~~ 183 (198)
T KOG0393|consen 179 LRPPQ 183 (198)
T ss_pred hcccc
Confidence 88765
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-34 Score=192.86 Aligned_cols=150 Identities=29% Similarity=0.545 Sum_probs=138.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
||++||..++|.+.+..|.|..|. |++.-+.+.+.++||||+|+|+|+.+...|++++.++|++||+++.+||..+ ..
T Consensus 36 Sfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~sv-qd 114 (193)
T KOG0093|consen 36 SFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSV-QD 114 (193)
T ss_pred hhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHH-HH
Confidence 689999999999999999997776 6666677889999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|.-.|+.++ .+.||++||||+|+..++- ++.+.++.++..+|. .|+|+||+.+.|++++|+.++..|.
T Consensus 115 w~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 115 WITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred HHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccccccHHHHHHHHHHHHH
Confidence 999999888 7999999999999987664 999999999999999 9999999999999999999999887
Q ss_pred CCch
Q 030337 161 QPPK 164 (179)
Q Consensus 161 ~~~~ 164 (179)
.+..
T Consensus 184 ~kms 187 (193)
T KOG0093|consen 184 DKMS 187 (193)
T ss_pred HHhh
Confidence 6443
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.5e-33 Score=204.71 Aligned_cols=165 Identities=33% Similarity=0.553 Sum_probs=142.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.||+.+ ..|
T Consensus 14 sli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~ 92 (190)
T cd04144 14 ALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERV-ERF 92 (190)
T ss_pred HHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788999999999999999988888888899999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 83 IPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 83 ~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+..+.... ++.|+++||||+|+.... .++...+..+++.+++ .++++||++|.|++++|+++++.
T Consensus 93 ~~~i~~~~~~~~~~~piilvgNK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 93 REQIQRVKDESAADVPIMIVGNKCDKVYER----------EVSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred HHHHHHHhcccCCCCCEEEEEEChhccccC----------ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHH
Confidence 88776543 478999999999997544 3777778889998897 89999999999999999999998
Q ss_pred HhCCchhh--------hhccCCCCCcccC
Q 030337 159 VLQPPKQK--------KKKKKSHRACSIL 179 (179)
Q Consensus 159 i~~~~~~~--------~~~~~~~~~c~~~ 179 (179)
+....... .+..+++.+|+||
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 162 LRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred HHHhhcccCCCcCCCCCcccccccCceeC
Confidence 76443222 3566677888887
No 22
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.5e-33 Score=201.47 Aligned_cols=171 Identities=46% Similarity=0.796 Sum_probs=147.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|++++.++.|.+.+.||++..+...+..+ +..+.++||||+|+++|..+++.+++++|++|+|||++++.||+++...
T Consensus 15 sli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~ 94 (187)
T cd04132 15 CLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDK 94 (187)
T ss_pred HHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHH
Confidence 578999999999999999998887767775 7889999999999999999999999999999999999999999999667
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+....++.|+++||||.|+..+. ...+.+..+++.+++..++...++++||++|.|+.++|+.+++.+..
T Consensus 95 ~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 95 WFPEVNHFCPGTPIMLVGLKTDLRKDK------NLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHhCCCCCEEEEEeChhhhhCc------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 988887766789999999999996533 12234678889999999988689999999999999999999999987
Q ss_pred Cchhh-hhccCCCCCcccC
Q 030337 162 PPKQK-KKKKKSHRACSIL 179 (179)
Q Consensus 162 ~~~~~-~~~~~~~~~c~~~ 179 (179)
..++. .++.+++.+|++|
T Consensus 169 ~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 169 KEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred hhhhhhhccCCCCcccccC
Confidence 76664 4566677889887
No 23
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.7e-33 Score=198.28 Aligned_cols=157 Identities=46% Similarity=0.826 Sum_probs=135.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+++.|.++|.||+++.+.+.+.++++.+.++||||+|+++|..++..++++++++|+|||+++++||+++...|
T Consensus 16 sl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 16 CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred HHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 57899999999999999999988878888999999999999999999999999999999999999999999999995569
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+....+++|++|||||+|+..+.... ......+.++.+++.++++..+...++|+||++|.|++++|+.++++.
T Consensus 96 ~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 96 VPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 98888776789999999999986532110 111223568889999999998855899999999999999999998864
No 24
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=195.82 Aligned_cols=149 Identities=29% Similarity=0.456 Sum_probs=131.6
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEE-CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|++.|..|.|.+=..||+|+.|. .-+.+ .|..+++++|||+|||+|+++...||+|+-++++|||+++.+||+.+ .
T Consensus 23 sll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv-~ 101 (213)
T KOG0091|consen 23 SLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHV-E 101 (213)
T ss_pred HHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHH-H
Confidence 588999999999999999995554 44555 57889999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHhhcC--CC-CcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 81 KWIPELRHYA--PG-VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 81 ~~~~~i~~~~--~~-~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.|+.+...+. |. +-++|||+|+|+...+ +++.++++.+++..|+ .|+|+||++|.||+++|.-+.+
T Consensus 102 ~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR----------qVt~EEaEklAa~hgM-~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 102 NWVKEAAMATQGPDKVVFLLVGHKSDLQSQR----------QVTAEEAEKLAASHGM-AFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccchhhhc----------cccHHHHHHHHHhcCc-eEEEecccCCCcHHHHHHHHHH
Confidence 9998887665 34 4466999999997654 5999999999999999 8999999999999999999988
Q ss_pred HHhCCc
Q 030337 158 VVLQPP 163 (179)
Q Consensus 158 ~i~~~~ 163 (179)
.+.+..
T Consensus 171 eIf~~i 176 (213)
T KOG0091|consen 171 EIFQAI 176 (213)
T ss_pred HHHHHH
Confidence 776543
No 25
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=189.58 Aligned_cols=150 Identities=28% Similarity=0.453 Sum_probs=139.3
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
|+++|+...|.++...|+|..|- +.+.++++.++++||||+|||+|++..+.||++|-+.++|||+++++||+.+ ..|
T Consensus 25 LLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaL-tnW 103 (214)
T KOG0086|consen 25 LLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNAL-TNW 103 (214)
T ss_pred HHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHH-HHH
Confidence 68999999999999999998886 7788899999999999999999999999999999999999999999999999 899
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+..++... +++-|+++|||.|+.+++. ++..++.+|+.+..+ -+.|+||++|.|+++.|-...+.|+.
T Consensus 104 L~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 104 LTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred HHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccccccHHHHHHHHHHHHHH
Confidence 99999887 6888999999999987664 999999999999998 89999999999999999999998876
Q ss_pred Cchh
Q 030337 162 PPKQ 165 (179)
Q Consensus 162 ~~~~ 165 (179)
+.+.
T Consensus 173 kIE~ 176 (214)
T KOG0086|consen 173 KIES 176 (214)
T ss_pred HHhh
Confidence 5443
No 26
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-33 Score=189.42 Aligned_cols=147 Identities=29% Similarity=0.483 Sum_probs=135.6
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
|++||.+|.|.|.+..|||+.|+ +++.++|++++++||||+|||+|+++...||+.||++|+|||++=.+||+-+ .+|
T Consensus 23 lvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdcl-pew 101 (213)
T KOG0095|consen 23 LVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCL-PEW 101 (213)
T ss_pred hhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhh-HHH
Confidence 78999999999999999997776 9999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+.+|.++. +.+--++||||.|+.+.+ +++...++++++.... -|+|+||+...|++++|..+.-.++.
T Consensus 102 lreie~yan~kvlkilvgnk~d~~drr----------evp~qigeefs~~qdm-yfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 102 LREIEQYANNKVLKILVGNKIDLADRR----------EVPQQIGEEFSEAQDM-YFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred HHHHHHHhhcceEEEeeccccchhhhh----------hhhHHHHHHHHHhhhh-hhhhhcccchhhHHHHHHHHHHHHHH
Confidence 99999988 467788999999997755 4899999999999887 79999999999999999998877664
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 171 ~ 171 (213)
T KOG0095|consen 171 E 171 (213)
T ss_pred H
Confidence 3
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.9e-32 Score=195.01 Aligned_cols=148 Identities=20% Similarity=0.398 Sum_probs=134.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.||+.+ ..|
T Consensus 17 sL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~-~~~ 95 (172)
T cd04141 17 AVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEA-SEF 95 (172)
T ss_pred HHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHH-HHH
Confidence 5788999999999999999988888888999999999999999999999999999999999999999999999999 678
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.... +++|+++||||+|+.... .++.+++..+++..++ ++++|||++|.||+++|+++++.+.
T Consensus 96 ~~~i~~~~~~~~~piilvgNK~Dl~~~~----------~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 96 KKLITRVRLTEDIPLVLVGNKVDLESQR----------QVTTEEGRNLAREFNC-PFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred HHHHHHhcCCCCCCEEEEEEChhhhhcC----------ccCHHHHHHHHHHhCC-EEEEEecCCCCCHHHHHHHHHHHHH
Confidence 88777643 579999999999996544 3888899999999998 8999999999999999999999887
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
..
T Consensus 165 ~~ 166 (172)
T cd04141 165 RK 166 (172)
T ss_pred Hh
Confidence 53
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.2e-32 Score=196.94 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=143.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|..+.|.+++.||++..+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+.+ ..|
T Consensus 20 sLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~-~~~ 98 (189)
T PTZ00369 20 ALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI-ASF 98 (189)
T ss_pred HHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888889999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.... +++|+++||||+|+.+.. +++.+++..+++.++. +++++||++|.||+++|+++++.+.
T Consensus 99 ~~~i~~~~~~~~~piiiv~nK~Dl~~~~----------~i~~~~~~~~~~~~~~-~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 99 REQILRVKDKDRVPMILVGNKCDLDSER----------QVSTGEGQELAKSFGI-PFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccc----------ccCHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 88877654 479999999999986543 3777788888888887 8999999999999999999998876
Q ss_pred CCc---hhhhhccCCCCCcccC
Q 030337 161 QPP---KQKKKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~---~~~~~~~~~~~~c~~~ 179 (179)
... .+.++.++++.-|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 168 KYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred HHhhccchhhhhhccCCeeeeC
Confidence 543 3344667777778876
No 29
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=9.7e-32 Score=192.66 Aligned_cols=156 Identities=58% Similarity=0.948 Sum_probs=134.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+++.|.++|.||+++.+.+.+.+++..+.++||||+|++.|..+++.+++++|++|+|||+++++||+++...|
T Consensus 16 sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~ 95 (174)
T cd01871 16 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 95 (174)
T ss_pred HHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57889999999999999999888888888999999999999999999999999999999999999999999999985579
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+..+....++.|++|||||+|+.+..... ......++++.+++..+++.++...++||||++|.|++++|+.+++.
T Consensus 96 ~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 96 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 88887766789999999999996432100 00112346889999999999986689999999999999999999874
No 30
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=184.60 Aligned_cols=147 Identities=31% Similarity=0.541 Sum_probs=135.7
Q ss_pred eehhhhhCCCC-CcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 4 IYIICNYSLGK-QDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 4 l~~~~~~~~f~-~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
|+.||..|-|- .+.++|+|..|. +.+..++++++++||||+|||+|++....||+++|+++++||+++..||+++ ..
T Consensus 13 llir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~-~~ 91 (192)
T KOG0083|consen 13 LLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNC-QA 91 (192)
T ss_pred EEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHH-HH
Confidence 78899999995 678999998776 8888999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+.+|.++. ..+.+.++|||+|+.+++ .+..++++.+++.+++ +|.|+||++|.|++-.|..+...+.
T Consensus 92 wlsei~ey~k~~v~l~llgnk~d~a~er----------~v~~ddg~kla~~y~i-pfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 92 WLSEIHEYAKEAVALMLLGNKCDLAHER----------AVKRDDGEKLAEAYGI-PFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred HHHHHHHHHHhhHhHhhhccccccchhh----------ccccchHHHHHHHHCC-CceeccccccccHhHHHHHHHHHHH
Confidence 999999988 578999999999998766 4889999999999999 8999999999999999999998776
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 53
No 31
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-31 Score=195.25 Aligned_cols=146 Identities=23% Similarity=0.378 Sum_probs=129.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|+.+.|.+.|.||+|..+. +.+.++++.+.++||||+|+++|..+++.++++++++|+|||++++.||+.+ ..
T Consensus 10 sLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i-~~ 88 (200)
T smart00176 10 TFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV-PN 88 (200)
T ss_pred HHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHH-HH
Confidence 588999999999999999996554 7778889999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+.+..+++|++|||||+|+.... +..+. ..+++..++ .|++|||++|.||.++|++|++.+..
T Consensus 89 w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 89 WHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999998877789999999999985422 44333 467777787 89999999999999999999998865
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 156 ~ 156 (200)
T smart00176 156 D 156 (200)
T ss_pred c
Confidence 4
No 32
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=5.1e-33 Score=189.09 Aligned_cols=148 Identities=26% Similarity=0.550 Sum_probs=137.6
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
||+.||+.+.|......|+...| .+.+.+.++...+.||||+|||+|-.+.+.||++++++++|||++|++||+.+ ..
T Consensus 28 SLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKV-Kn 106 (218)
T KOG0088|consen 28 SLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKV-KN 106 (218)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHH-HH
Confidence 68899999999999999997666 48899999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|..+++.+. +.+.+++||||+|+.+++. ++..++..+++.-|. .|+++||+++.||.++|+.|....+
T Consensus 107 WV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 107 WVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred HHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccccccCHHHHHHHHHHHHH
Confidence 999999988 5788999999999987664 999999999999998 8999999999999999999988776
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 176 E~ 177 (218)
T KOG0088|consen 176 EH 177 (218)
T ss_pred HH
Confidence 53
No 33
>PTZ00099 rab6; Provisional
Probab=99.98 E-value=5.4e-31 Score=188.94 Aligned_cols=142 Identities=30% Similarity=0.484 Sum_probs=126.0
Q ss_pred hCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 030337 10 YSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 88 (179)
Q Consensus 10 ~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~ 88 (179)
.+.|.++|.||+|..+ .+.+.++++.+.+.||||+|++++..++..++++|+++|+|||++++.||+.+ ..|+..+..
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~ 80 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILN 80 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 4789999999999655 47788899999999999999999999999999999999999999999999999 789888866
Q ss_pred cC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 89 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 89 ~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
.. +++|++|||||+|+.... .++.+++..+++.++. .++++||++|.||+++|++|++.+.+..
T Consensus 81 ~~~~~~piilVgNK~DL~~~~----------~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 81 ERGKDVIIALVGNKTDLGDLR----------KVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred hcCCCCeEEEEEECccccccc----------CCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 54 579999999999996533 3788888899998887 7999999999999999999999886533
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=5.4e-31 Score=194.79 Aligned_cols=147 Identities=22% Similarity=0.330 Sum_probs=129.7
Q ss_pred eeehhhhhCCCCCcccCceeec-eeeEEEECC-eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDN-FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~-~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+|..+.|...|.||+|.. +.+.+.+++ ..+.++||||+|++.+..++..+++++|++|+|||+++++||+++ .
T Consensus 15 sLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~-~ 93 (215)
T cd04109 15 SLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENL-E 93 (215)
T ss_pred HHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-H
Confidence 4788999999999999999944 457777754 679999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 81 KWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 81 ~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
.|+..+.+.. .++|+++||||+|+.+.. .++.+++..+++.+++ .++++||++|.|++++|++++
T Consensus 94 ~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----------~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 94 DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----------TVKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred HHHHHHHHhccccCCCceEEEEEECccccccc----------ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHH
Confidence 8999888764 257899999999996544 3788889999999997 899999999999999999999
Q ss_pred HHHhC
Q 030337 157 KVVLQ 161 (179)
Q Consensus 157 ~~i~~ 161 (179)
+.+..
T Consensus 163 ~~l~~ 167 (215)
T cd04109 163 AELLG 167 (215)
T ss_pred HHHHh
Confidence 98864
No 35
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-32 Score=184.44 Aligned_cols=151 Identities=31% Similarity=0.496 Sum_probs=136.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC---------CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+++++|..+.|....+.|+|..|. |++.++ +..+.+++|||+|||+|+++...++++|-+++++||+++.
T Consensus 24 s~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e 103 (219)
T KOG0081|consen 24 SFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE 103 (219)
T ss_pred EEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch
Confidence 689999999999999999997775 777763 2568999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 73 ASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
.||-++ ..|+.+++-+. .++.||++|||+|+.+.+ .++.+++..++..+++ +|+|+||.+|.||++
T Consensus 104 qSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R----------~Vs~~qa~~La~kygl-PYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 104 QSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQR----------VVSEDQAAALADKYGL-PYFETSACTGTNVEK 171 (219)
T ss_pred HHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhh----------hhhHHHHHHHHHHhCC-CeeeeccccCcCHHH
Confidence 999999 89999998654 688899999999997765 4999999999999999 899999999999999
Q ss_pred HHHHHHHHHhCCchh
Q 030337 151 VFDAAIKVVLQPPKQ 165 (179)
Q Consensus 151 ~f~~l~~~i~~~~~~ 165 (179)
+.+.|++.+++..++
T Consensus 172 ave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 172 AVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876544
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1e-30 Score=191.44 Aligned_cols=150 Identities=27% Similarity=0.389 Sum_probs=132.6
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+|+++.|.+.+.||+|..+. +.+.++ +..+.+++|||+|+++|..+++.++++++++|+|||++++.+|+.+ .
T Consensus 15 sli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~-~ 93 (201)
T cd04107 15 SIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAV-L 93 (201)
T ss_pred HHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHH-H
Confidence 578999999999999999996654 677777 8889999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 81 KWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.|+..+.... .++|++|||||+|+.... .++.+++.++++..+...++++||++|.|++++|+++
T Consensus 94 ~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 94 KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----------AKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred HHHHHHHHhhcccCCCCCcEEEEEECCCccccc----------ccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHH
Confidence 8988876432 478999999999996433 3788889999999995589999999999999999999
Q ss_pred HHHHhCCc
Q 030337 156 IKVVLQPP 163 (179)
Q Consensus 156 ~~~i~~~~ 163 (179)
++.+....
T Consensus 164 ~~~l~~~~ 171 (201)
T cd04107 164 VKNILAND 171 (201)
T ss_pred HHHHHHhc
Confidence 99887654
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=7.1e-31 Score=186.56 Aligned_cols=147 Identities=27% Similarity=0.502 Sum_probs=132.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+++.||+|..+. +.+.+++..+.++||||+|++++...+..++++++++|+|||++++.+|+.+ ..
T Consensus 17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~ 95 (166)
T cd04122 17 CLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SS 95 (166)
T ss_pred HHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 578999999999999999997775 6677899999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++||||+|+.... .++.+++..+++..++ .++++||++|.|++++|.++++.+.
T Consensus 96 ~~~~~~~~~~~~~~iiiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 96 WLTDARNLTNPNTVIFLIGNKADLEAQR----------DVTYEEAKQFADENGL-LFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccc----------CcCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998887665 579999999999997654 3778889999999887 8999999999999999999998875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 165 ~ 165 (166)
T cd04122 165 Q 165 (166)
T ss_pred h
Confidence 4
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.3e-30 Score=188.16 Aligned_cols=152 Identities=26% Similarity=0.475 Sum_probs=128.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|++||+++.|.++|.||+|..+. +.+.+++..+.++||||+|+++|..+++.++++++++++|||++++.||+++ ..
T Consensus 15 sLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i-~~ 93 (182)
T cd04128 15 SLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSI-KE 93 (182)
T ss_pred HHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHH-HH
Confidence 578999999999999999996654 7888999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCC-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.+..+ ..| ++||||+|+..+.. ........+++.++++.+++ .++++||++|.|++++|+++++.+.
T Consensus 94 ~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 94 WYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred HHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9998887653 466 68899999963211 00011224677888988896 8999999999999999999999887
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 167 ~~ 168 (182)
T cd04128 167 DL 168 (182)
T ss_pred hc
Confidence 63
No 39
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.8e-30 Score=184.60 Aligned_cols=159 Identities=55% Similarity=0.936 Sum_probs=138.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|..+.|.+.+.||++..+...+.+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+++...|
T Consensus 13 sli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~ 92 (174)
T smart00174 13 CLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKW 92 (174)
T ss_pred HHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57889999999999999999888888888999999999999999999999999999999999999999999999986679
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.+..++.|++|||||+|+..+.... ......+.++.+++.++++..+...++++||++|.|++++|+.+++.++
T Consensus 93 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 93 YPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred HHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 99998877889999999999997532110 0112234578888999999999768999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 173 ~ 173 (174)
T smart00174 173 N 173 (174)
T ss_pred C
Confidence 5
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=2.3e-30 Score=189.29 Aligned_cols=148 Identities=28% Similarity=0.488 Sum_probs=132.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|.++.|.+.+.||+|..+. ..+.+++..+.+.|||++|++.+..++..++++++++++|||++++++|+.+ ..
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~-~~ 99 (199)
T cd04110 21 SLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNV-KR 99 (199)
T ss_pred HHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHH-HH
Confidence 578899999999999999986554 7777888889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+....+..|++|||||+|+.+.. .++.+++..+++.++. .++++||++|.||+++|+++++.++.
T Consensus 100 ~~~~i~~~~~~~piivVgNK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 100 WLQEIEQNCDDVCKVLVGNKNDDPERK----------VVETEDAYKFAGQMGI-SLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred HHHHHHHhCCCCCEEEEEECccccccc----------ccCHHHHHHHHHHcCC-EEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 999988877789999999999997644 3677888889998887 89999999999999999999998875
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 169 ~ 169 (199)
T cd04110 169 A 169 (199)
T ss_pred h
Confidence 3
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3e-30 Score=182.68 Aligned_cols=144 Identities=30% Similarity=0.523 Sum_probs=130.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+++|+++.|.+.+.||+|..+. +.+.+++..+.++|||++|++++..++..++++++++++|||+++++||+.+ ..
T Consensus 15 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~-~~ 93 (161)
T cd04117 15 CLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MK 93 (161)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999996654 7788899899999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
|+..+.... .+.|+++||||.|+.... .++.+++..+++.+++ +|+++||++|.|++++|.+|++.
T Consensus 94 ~~~~~~~~~~~~~~iilvgnK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 94 WVSDVDEYAPEGVQKILIGNKADEEQKR----------QVGDEQGNKLAKEYGM-DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccc----------CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHhh
Confidence 999887766 479999999999996644 3778899999999997 89999999999999999999874
No 42
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=186.88 Aligned_cols=150 Identities=33% Similarity=0.533 Sum_probs=137.7
Q ss_pred eeeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 2 RFIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 2 ~~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
-+|+.+|+++.|.++|.||+++.|.+.+.++++.+.+.|+||+|++.|..+...++++++|+++||+++|+.||+.+ ..
T Consensus 17 Sal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~-~~ 95 (196)
T KOG0395|consen 17 SALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEA-KQ 95 (196)
T ss_pred chheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHH-HH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+...|.+.. ..+|+++||||+|+...+ .++.+++..++..+++ .|+|+||+.+.+++++|..|++.+
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R----------~V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERER----------QVSEEEGKALARSWGC-AFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhcc----------ccCHHHHHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHH
Confidence 888884433 478999999999997654 4999999999999999 699999999999999999999988
Q ss_pred hCCc
Q 030337 160 LQPP 163 (179)
Q Consensus 160 ~~~~ 163 (179)
-.+.
T Consensus 165 ~~~~ 168 (196)
T KOG0395|consen 165 RLPR 168 (196)
T ss_pred Hhhh
Confidence 6633
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=6.7e-30 Score=180.54 Aligned_cols=145 Identities=27% Similarity=0.522 Sum_probs=129.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+++ ..|
T Consensus 16 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~ 94 (163)
T cd04136 16 ALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDL-QDL 94 (163)
T ss_pred HHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.... .+.|+++||||+|+.+... +..+++..+++.++. +++++||++|.|+.++|+++++.+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHhc
Confidence 88887653 4799999999999965442 677778888888886 899999999999999999998865
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=8.4e-30 Score=188.82 Aligned_cols=146 Identities=23% Similarity=0.365 Sum_probs=128.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|+.+.|.+.+.||+|..+. ..+..++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+ ..
T Consensus 28 sli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i-~~ 106 (219)
T PLN03071 28 TFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PT 106 (219)
T ss_pred HHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHH-HH
Confidence 578899999999999999996554 6677788889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+.+..++.|++|||||+|+.... +..+.+ .+++..++ .|+++||++|.|++++|+++++.+..
T Consensus 107 w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 107 WHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 999998877789999999999996422 444444 67777777 89999999999999999999998875
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
.
T Consensus 174 ~ 174 (219)
T PLN03071 174 D 174 (219)
T ss_pred C
Confidence 4
No 45
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.6e-29 Score=184.09 Aligned_cols=146 Identities=42% Similarity=0.608 Sum_probs=118.4
Q ss_pred hCCCCCcccCcee--eceeeE--------EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 10 YSLGKQDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 10 ~~~f~~~~~pt~~--~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
++.|.++|.||+| +.+... +.+++..+.++||||+|++. .+...++++++++|+|||++++.||+++.
T Consensus 30 ~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~ 107 (195)
T cd01873 30 QYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVK 107 (195)
T ss_pred cccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHH
Confidence 3456788999997 444433 25789999999999999986 35567999999999999999999999994
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCcccccccc---------cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRDDKQFF---------IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
..|+..++...++.|++|||||+|+....... ......++++.++++++++.+++ .|+||||++|.||++
T Consensus 108 ~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e 186 (195)
T cd01873 108 TMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKD 186 (195)
T ss_pred HHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHH
Confidence 46999998777789999999999996421100 00012467899999999999998 999999999999999
Q ss_pred HHHHHHHH
Q 030337 151 VFDAAIKV 158 (179)
Q Consensus 151 ~f~~l~~~ 158 (179)
+|+.++++
T Consensus 187 ~F~~~~~~ 194 (195)
T cd01873 187 VFDNAIRA 194 (195)
T ss_pred HHHHHHHh
Confidence 99999874
No 46
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.1e-29 Score=184.11 Aligned_cols=164 Identities=26% Similarity=0.452 Sum_probs=139.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.|.||+|..+ .+.+.++++.+.+++|||+|++.+..++..++++++++++|||++++.+|+.+ ..
T Consensus 15 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i-~~ 93 (188)
T cd04125 15 SLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENL-KF 93 (188)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHH-HH
Confidence 57899999999999999998655 47788888899999999999999999999999999999999999999999999 77
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++||||.|+.+.. .++.+.+..+++..++ +++++||++|.|++++|+++++.+.
T Consensus 94 ~~~~i~~~~~~~~~~ivv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 94 WINEINRYARENVIKVIVANKSDLVNNK----------VVDSNIAKSFCDSLNI-PFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred HHHHHHHhCCCCCeEEEEEECCCCcccc----------cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999888765 468999999999997544 3777888889888888 8999999999999999999999886
Q ss_pred CCchhh-------hhccCCCCCccc
Q 030337 161 QPPKQK-------KKKKKSHRACSI 178 (179)
Q Consensus 161 ~~~~~~-------~~~~~~~~~c~~ 178 (179)
...... .+.-.++.+|.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 163 KRLEEQELSPKNIKQQFKKKNNCFI 187 (188)
T ss_pred HHhhcCcCCccccccccccccCccc
Confidence 532221 234455566765
No 47
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1e-29 Score=180.16 Aligned_cols=145 Identities=28% Similarity=0.525 Sum_probs=130.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+.+ ..|
T Consensus 16 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~ 94 (164)
T cd04175 16 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDL 94 (164)
T ss_pred HHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999999 678
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.... .+.|+++||||+|+.+... ++.+++..+++.+++ +++++||++|.|++++|+++++++
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 95 REQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 77776543 5899999999999976443 677778888888887 899999999999999999999865
No 48
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.3e-29 Score=179.24 Aligned_cols=155 Identities=46% Similarity=0.813 Sum_probs=132.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|.++.|..+|.||+++.+...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.+|+.+...|
T Consensus 15 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~ 94 (173)
T cd04130 15 SLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKW 94 (173)
T ss_pred HHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHH
Confidence 57889999999999999998888888888998999999999999999999999999999999999999999999985679
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+..+....++.|+++||||+|+....... ......+.+..+++..+++..+...++++||++|.|++++|+.++-
T Consensus 95 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 95 IPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 98888665679999999999996432100 0001234678889999999999878999999999999999998764
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.7e-29 Score=178.75 Aligned_cols=145 Identities=27% Similarity=0.492 Sum_probs=129.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+++.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.||+++ ..|
T Consensus 16 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~ 94 (163)
T cd04176 16 ALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPM 94 (163)
T ss_pred HHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4678999999999999999877778888999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+.... .+.|+++||||+|+.... .+...++..+++.++. +++++||++|.|+.++|.++++.+
T Consensus 95 ~~~~~~~~~~~~~piviv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 95 RDQIVRVKGYEKVPIILVGNKVDLESER----------EVSSAEGRALAEEWGC-PFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhcC----------ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHhc
Confidence 88877654 579999999999996543 2666778888888887 899999999999999999998754
No 50
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.3e-29 Score=179.13 Aligned_cols=146 Identities=38% Similarity=0.735 Sum_probs=134.8
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|.++.|.+++.||+| +.+.+.+..++..+.++|||++|+++|..++..++++++++|+|||+++++||+.+ ..
T Consensus 14 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~-~~ 92 (162)
T PF00071_consen 14 SLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENL-KK 92 (162)
T ss_dssp HHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH-HH
T ss_pred HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 57889999999999999997 55568899999999999999999999999888999999999999999999999999 79
Q ss_pred HHHHHhhcCC-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|++.+....+ ++|++|+|||.|+.... .++.++++++++.++. .|+|+||+++.||.++|..+++.+.
T Consensus 93 ~~~~i~~~~~~~~~iivvg~K~D~~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 93 WLEEIQKYKPEDIPIIVVGNKSDLSDER----------EVSVEEAQEFAKELGV-PYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHSTTTSEEEEEEETTTGGGGS----------SSCHHHHHHHHHHTTS-EEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeeccccccccc----------cchhhHHHHHHHHhCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999998886 79999999999998744 4899999999999995 9999999999999999999999875
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=2e-29 Score=186.44 Aligned_cols=154 Identities=26% Similarity=0.348 Sum_probs=122.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.+ +.||+|..+... ....+.+.||||+|++.|..++..++++++++|+|||++++.||+++ ..|
T Consensus 15 SLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l-~~~ 89 (220)
T cd04126 15 SLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL-EDR 89 (220)
T ss_pred HHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 5789999999975 689998655421 12468899999999999999999999999999999999999999999 555
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccc---------cCCCCCccccHHHHHHHHHHhCC-------------CeEEE
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFF---------IDHPGAVPITTAQGEELRKLIGS-------------PAYIE 139 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~e 139 (179)
+..+.+.. +++|++|||||+|+.++.... ......+.++.+++..+++..+. ..|+|
T Consensus 90 ~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E 169 (220)
T cd04126 90 FLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFE 169 (220)
T ss_pred HHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEE
Confidence 55555443 579999999999997622110 00112467899999999998762 27999
Q ss_pred eccCCCCcHHHHHHHHHHHHhC
Q 030337 140 CSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 140 ~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|||++|.||+++|..+++.++.
T Consensus 170 ~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 170 TSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999997764
No 52
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=1.5e-29 Score=181.90 Aligned_cols=147 Identities=31% Similarity=0.518 Sum_probs=129.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC----------CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.++.++.|.+.+.||+|..+. +.+.++ +..+.++||||+|+++|..++..++++++++++|||+++
T Consensus 19 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 98 (180)
T cd04127 19 SFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN 98 (180)
T ss_pred HHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 578999999999999999996664 555554 467899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 72 KASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
++||+++ ..|+..+.... ++.|+++||||+|+.+.. .++.+++.++++.+++ +++++||++|.|++
T Consensus 99 ~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~ 166 (180)
T cd04127 99 EQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQR----------QVSEEQAKALADKYGI-PYFETSAATGTNVE 166 (180)
T ss_pred HHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcC----------ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 9999999 78999887654 578999999999997644 3777889999999998 89999999999999
Q ss_pred HHHHHHHHHHhC
Q 030337 150 AVFDAAIKVVLQ 161 (179)
Q Consensus 150 ~~f~~l~~~i~~ 161 (179)
++|+++++.+++
T Consensus 167 ~l~~~l~~~~~~ 178 (180)
T cd04127 167 KAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3.8e-29 Score=177.86 Aligned_cols=147 Identities=27% Similarity=0.524 Sum_probs=131.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.|.||+|..+. ..+.+++..+.+++|||+|++++..++..+++++|++++|||++++.+|+.+ ..
T Consensus 18 sl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~ 96 (167)
T cd01867 18 CLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENI-RN 96 (167)
T ss_pred HHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhH-HH
Confidence 578999999999999999996664 6777888889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++||||+|+.+... +..+++..+++.+++ +++++||++|.|++++|+++++.+.
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999888765 5799999999999976443 677888899999888 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 166 ~ 166 (167)
T cd01867 166 K 166 (167)
T ss_pred h
Confidence 4
No 54
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=172.32 Aligned_cols=148 Identities=27% Similarity=0.478 Sum_probs=136.6
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
|+++|....|..+...|||+.|- ..+.+.|.+++++||||+|+|+|+...+.|++++-+.++|||++.+.+++.+ ..|
T Consensus 27 llhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhl-ssw 105 (215)
T KOG0097|consen 27 LLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSW 105 (215)
T ss_pred HHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhH-HHH
Confidence 68999999999999999999886 5566889999999999999999999999999999999999999999999999 899
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+...+... ++..++++|||.|+..++. +..+++++++++.|+ .|+|+||++|.|+++.|-...+++.+
T Consensus 106 l~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 106 LTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred HhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEecccccCcHHHHHHHHHHHHHH
Confidence 99888776 7899999999999977664 999999999999999 89999999999999999999888876
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
+.
T Consensus 175 ni 176 (215)
T KOG0097|consen 175 NI 176 (215)
T ss_pred hh
Confidence 43
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=5.2e-29 Score=176.83 Aligned_cols=146 Identities=30% Similarity=0.571 Sum_probs=130.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.|.||+|..+. +++..++..+.+++|||+|++++..++..++++++++++|||++++++|+.+ ..
T Consensus 16 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~-~~ 94 (165)
T cd01865 16 SFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QD 94 (165)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHH-HH
Confidence 578999999999999999996554 6677788889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|++.+.... ++.|+++||||+|+.+.. .+..+.+.++++.+++ +++++||++|.|++++|+++++.+.
T Consensus 95 ~~~~i~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 95 WSTQIKTYSWDNAQVILVGNKCDMEDER----------VVSSERGRQLADQLGF-EFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHhCCCCCCEEEEEECcccCccc----------ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999988766 579999999999997644 3677788888888888 8999999999999999999998764
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=6.8e-29 Score=177.29 Aligned_cols=149 Identities=27% Similarity=0.437 Sum_probs=128.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+++|+++.|.++|.||++..+. +.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+.+ ..
T Consensus 15 sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~ 93 (170)
T cd04108 15 CLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQ 93 (170)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 578999999999999999997765 7788899899999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-C-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.+.. + ++|+++||||+|+..... .....+++..+++.++. +++++||++|.|++++|+.+++.+
T Consensus 94 ~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 94 WLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred HHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHH
Confidence 998876543 3 578999999999864321 12345677788888887 899999999999999999999987
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
.+
T Consensus 165 ~~ 166 (170)
T cd04108 165 FE 166 (170)
T ss_pred HH
Confidence 54
No 57
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=2.1e-28 Score=174.85 Aligned_cols=158 Identities=48% Similarity=0.873 Sum_probs=135.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|..+.|.+.+.||+++.+...+.+++..+.+++|||+|++.|...+..++++++++++|||++++.+|+.+...|
T Consensus 15 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~ 94 (174)
T cd04135 15 CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 94 (174)
T ss_pred HHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888878888999999999999999999999999999999999999999999999996679
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+....++.|+++||||+|+.++.... ......+.++.+++..+++..+...++++||++|.|++++|+.+++.++
T Consensus 95 ~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 95 VPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred HHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHhC
Confidence 88887666789999999999986533110 0111223577888999999999878999999999999999999998763
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1e-28 Score=179.45 Aligned_cols=148 Identities=32% Similarity=0.577 Sum_probs=130.8
Q ss_pred eeehhhhhCCCC-CcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|. +++.||++..+. +.+.+++..+.++||||+|++++...+..++++++++|+|||++++++|+++ .
T Consensus 15 Sli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~ 93 (191)
T cd04112 15 CLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNI-R 93 (191)
T ss_pred HHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHH-H
Confidence 478899999996 478999986665 5678899999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 81 KWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 81 ~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.|+..+.... .++|+++||||+|+.... .+..+++..+++.++. +++++||++|.|++++|+++++.+
T Consensus 94 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~~----------~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 94 AWLTEIKEYAQEDVVIMLLGNKADMSGER----------VVKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred HHHHHHHHhCCCCCcEEEEEEcccchhcc----------ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8999888776 479999999999996543 2677788899998887 899999999999999999999988
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
...
T Consensus 163 ~~~ 165 (191)
T cd04112 163 KHR 165 (191)
T ss_pred HHh
Confidence 765
No 59
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=2.9e-28 Score=177.13 Aligned_cols=152 Identities=29% Similarity=0.414 Sum_probs=131.4
Q ss_pred eeehhhhhCCCCC-cccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQ-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~-~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+|+++.|.. .|.||+|..+. +.+.+++..+.+++|||+|++++..++..++++++++++|||++++.+|+++ .
T Consensus 15 sLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~ 93 (193)
T cd04118 15 SLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-K 93 (193)
T ss_pred HHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHH-H
Confidence 5889999999985 79999997664 6788899999999999999999999999999999999999999999999998 7
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.|+..+....++.|+++|+||+|+.... ...+.+..+++..++...+. .++++||++|.|++++|+++++.+.
T Consensus 94 ~~~~~i~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 94 FWVKELQNLEEHCKIYLCGTKSDLIEQD------RSLRQVDFHDVQDFADEIKA-QHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHhcCCCCCEEEEEEcccccccc------cccCccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999988766689999999999986422 11234566778888888887 7999999999999999999999886
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 167 ~~ 168 (193)
T cd04118 167 SR 168 (193)
T ss_pred Hh
Confidence 53
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=1.2e-28 Score=174.95 Aligned_cols=146 Identities=29% Similarity=0.576 Sum_probs=131.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|...+.||++..+. +.+.+++..+.+++||++|++++..++..++++++++|+|||+++++||+.+ ..
T Consensus 17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l-~~ 95 (166)
T cd01869 17 CLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQ 95 (166)
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhH-HH
Confidence 578899999999999999986554 7788888899999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++||||+|+.... .+..+++..+++.+++ +++++||++|.|++++|+++++.+.
T Consensus 96 ~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 96 WLQEIDRYASENVNKLLVGNKCDLTDKR----------VVDYSEAQEFADELGI-PFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHhCCCCCcEEEEEEChhccccc----------CCCHHHHHHHHHHcCC-eEEEEECCCCcCHHHHHHHHHHHHH
Confidence 999988776 579999999999986544 3777888999999998 8999999999999999999999875
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=1.5e-28 Score=173.46 Aligned_cols=141 Identities=26% Similarity=0.299 Sum_probs=119.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.+.+.|+ +..+.+.+.+++..+.++||||+|++. ..+++++|++++|||++++.||+++ ..|
T Consensus 15 sli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~-~~~ 87 (158)
T cd04103 15 ALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTV-YNL 87 (158)
T ss_pred HHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 478899999999888777 445567788999999999999999975 3467899999999999999999999 689
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+..+.... +++|+++||||.|+... ..+.++.+++.++++..+...|+||||++|.||+++|+.+++.
T Consensus 88 ~~~i~~~~~~~~~piilvgnK~Dl~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 88 YHQLSSYRNISEIPLILVGTQDAISES--------NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHhcCCCCCCEEEEeeHHHhhhc--------CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99888765 57999999999998531 1235888888999988753489999999999999999999865
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=3e-28 Score=173.29 Aligned_cols=145 Identities=26% Similarity=0.422 Sum_probs=126.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. ..+..++..+.+.+|||+|++.+..++..+++++|++|+|||++++++|+.+ ..
T Consensus 15 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 93 (166)
T cd00877 15 TFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNV-PN 93 (166)
T ss_pred HHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 578899999999999999986554 5566688889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+.....++|+++||||+|+.... +. .++.++++..++ .++++||++|.|++++|++|++.+.+
T Consensus 94 ~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 94 WHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 999998877789999999999997322 33 234566666666 89999999999999999999998875
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=2e-28 Score=172.53 Aligned_cols=144 Identities=33% Similarity=0.555 Sum_probs=128.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++++.|.+++.||+++.+.+.+.+++..+.+++|||+|++++..++..++++++++++|||++++.+|+++ ..|
T Consensus 16 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~-~~~ 94 (162)
T cd04138 16 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTY 94 (162)
T ss_pred HHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 5789999999999999999988888888999899999999999999999999999999999999999999999998 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.+.. .+.|+++|+||+|+.... +...++..+++..+. +++++||++|.|++++|+++++.+
T Consensus 95 ~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 95 REQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCCCCHHHHHHHHHHHh
Confidence 87777654 479999999999996532 667788888888888 899999999999999999998754
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.8e-28 Score=174.07 Aligned_cols=144 Identities=24% Similarity=0.415 Sum_probs=127.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||++..+.+.+..++..+.+++|||+|+++|..++..++++++++|+|||++++.+|+.+ ..|
T Consensus 16 sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~ 94 (165)
T cd04140 16 SLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEEL-KPI 94 (165)
T ss_pred HHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788999999999999999988877778888889999999999999999988999999999999999999999998 778
Q ss_pred HHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 83 IPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 83 ~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+..++... ++.|+++||||+|+.... .+..+++..++..+++ .++++||++|.|++++|++|++.
T Consensus 95 ~~~i~~~~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 95 YELICEIKGNNIEKIPIMLVGNKCDESHKR----------EVSSNEGAACATEWNC-AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHHhcCCCCCCCEEEEEECccccccC----------eecHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHHHHhc
Confidence 77776542 479999999999996533 3777788888888887 89999999999999999999753
No 65
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=3.9e-28 Score=172.82 Aligned_cols=147 Identities=27% Similarity=0.494 Sum_probs=131.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|.++.|.+.+.||++..+.+.+.+++..+.+++|||+|+++|..+++.++++++++++|||++++++++.+ ..|
T Consensus 16 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~-~~~ 94 (168)
T cd04177 16 ALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL-GEL 94 (168)
T ss_pred HHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788999999999999999988888888899999999999999999999999999999999999999999999999 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.+.. .+.|+++++||.|+.... .++.+++..+++.++..+++++||++|.|++++|++++++++
T Consensus 95 ~~~i~~~~~~~~~piiiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 95 REQVLRIKDSDNVPMVLVGNKADLEDDR----------QVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHhhCCCCCCEEEEEEChhccccC----------ccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 88877543 479999999999996543 367777888888888448999999999999999999998876
No 66
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=8.9e-28 Score=171.79 Aligned_cols=157 Identities=45% Similarity=0.836 Sum_probs=133.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|.++.|.+.|.||+++.+.+.+.++++.+.+.+|||+|++.|..++..++++++++++|||++++++|+++...|
T Consensus 16 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~ 95 (175)
T cd01870 16 CLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 95 (175)
T ss_pred HHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47899999999999999999888778888999999999999999999999889999999999999999999999986679
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.+..++.|+++|+||.|+....... ........+...++.++++..+...+++|||++|.|++++|+++++.+
T Consensus 96 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 96 TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 88888766789999999999986532110 001122346678889999988877899999999999999999998754
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=3.8e-28 Score=173.00 Aligned_cols=145 Identities=30% Similarity=0.521 Sum_probs=127.9
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|+.+.|.+.+.||+|..+ .+.+.++++.+.++|||++|++++..++..++++++++++|||++++++|+.+ ..
T Consensus 20 sli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 98 (170)
T cd04116 20 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNL-SN 98 (170)
T ss_pred HHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhH-HH
Confidence 57889999999999999999665 47788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 WIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
|...+.... .+.|+++||||.|+.. . .++.+++.++++.++...++++||++|.|+.++|++++
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 99 WKKEFIYYADVKEPESFPFVVLGNKNDIPE-R----------QVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHHHHHhcccccCCCCcEEEEEECccccc-c----------ccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 988776543 3689999999999863 2 36778899999998876899999999999999999998
Q ss_pred HHH
Q 030337 157 KVV 159 (179)
Q Consensus 157 ~~i 159 (179)
+.+
T Consensus 168 ~~~ 170 (170)
T cd04116 168 RRV 170 (170)
T ss_pred hhC
Confidence 753
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=3e-28 Score=172.01 Aligned_cols=144 Identities=30% Similarity=0.480 Sum_probs=129.0
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEEC--CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|+.++..+.|.+++.||++..+ .+.+.++ +..+.++||||+|+++|..++..++++++++++|||++++++|+.+
T Consensus 15 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l- 93 (162)
T cd04106 15 SMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI- 93 (162)
T ss_pred HHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-
Confidence 57899999999999999998666 4667776 7789999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..|+..+....+++|+++|+||.|+..+.. ++.+++..+++.+++ +++++||++|.|++++|++|...
T Consensus 94 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 94 ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHh
Confidence 789998887777899999999999976443 777888999999998 89999999999999999998753
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=3.9e-28 Score=171.97 Aligned_cols=146 Identities=19% Similarity=0.410 Sum_probs=130.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. +.+.+++..+.+++|||+|++.+..++..++++++++|+|||++++.+|+.+ ..
T Consensus 15 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~-~~ 93 (168)
T cd04119 15 CIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DS 93 (168)
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhH-HH
Confidence 578899999999999999997664 7788889999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC------CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 82 WIPELRHYA------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 82 ~~~~i~~~~------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
|+..+.+.. .+.|+++|+||+|+.++. .++.+++..+++..+. +++++||++|.|++++|++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 94 WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----------AVSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred HHHHHHHhccccccCCCceEEEEEEchhccccc----------ccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHH
Confidence 998887664 268999999999996433 3678888888888886 89999999999999999999
Q ss_pred HHHHh
Q 030337 156 IKVVL 160 (179)
Q Consensus 156 ~~~i~ 160 (179)
++.++
T Consensus 163 ~~~l~ 167 (168)
T cd04119 163 FSSIV 167 (168)
T ss_pred HHHHh
Confidence 99876
No 70
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.6e-27 Score=172.60 Aligned_cols=159 Identities=43% Similarity=0.712 Sum_probs=134.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+...+.+++..+.+.+||++|++.+....+.+++++++++++||++++++|+.+...|
T Consensus 16 tLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~ 95 (187)
T cd04129 16 SLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKW 95 (187)
T ss_pred HHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 46788889999999999998888878888898899999999999998888778899999999999999999999995579
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+..+++..++.|+++||||+|+.++..........+.++.+.+..+++..+...+++|||++|.|++++|+++.+.++.
T Consensus 96 ~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 96 IEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred HHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 9999877778999999999998643210001112345667788999999997789999999999999999999987754
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4.4e-28 Score=171.97 Aligned_cols=145 Identities=28% Similarity=0.451 Sum_probs=129.3
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.+.||++..+ .+.+.+++..+.++||||||++++..++..+++++|++++|||++++.+|+.+ ..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~~ 96 (165)
T cd01864 18 CVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PH 96 (165)
T ss_pred HHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhH-HH
Confidence 47889999999999999998655 47788888889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
|+..+.... .++|+++|+||+|+.... ++..+++..+++..+...++++||++|.|++++|+++.+.
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQR----------EVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccccc----------ccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 999987755 579999999999997544 3777888999999887789999999999999999999875
No 72
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=3.6e-28 Score=179.81 Aligned_cols=147 Identities=27% Similarity=0.479 Sum_probs=132.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|..+.|..++.||+|..+ .+.+.+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+ ..
T Consensus 27 tLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~ 105 (216)
T PLN03110 27 NILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QR 105 (216)
T ss_pred HHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHH-HH
Confidence 47889999999999999999666 47888899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .++|+++||||+|+.... .++.+.+..++...++ +++++||++|.|++++|++++..+.
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~----------~~~~~~~~~l~~~~~~-~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLR----------SVAEEDGQALAEKEGL-SFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhccccc----------CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999888776 479999999999996544 3777888999988887 8999999999999999999998775
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 175 ~ 175 (216)
T PLN03110 175 H 175 (216)
T ss_pred H
Confidence 4
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=5.7e-28 Score=170.98 Aligned_cols=146 Identities=30% Similarity=0.535 Sum_probs=130.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+.+.+.+++..+.+++|||+|++++..++..++++++++++|||++++++|+.+ ..|
T Consensus 15 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 93 (164)
T smart00173 15 ALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEI-KKF 93 (164)
T ss_pred HHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888899999999999999999999999999999999999999999999999 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.+.. .+.|+++||||+|+.++.. ++.+.+..+++..+. +++++||++|.|++++|+++++.+.
T Consensus 94 ~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 94 REQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 77776543 4799999999999976442 677788888888886 8999999999999999999998765
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=6.9e-28 Score=181.27 Aligned_cols=148 Identities=26% Similarity=0.334 Sum_probs=127.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+++.|.++|.||+++.+.+.+.++++.+.++||||+|++.|..++..++.++|++|+|||+++++||+++ ..|
T Consensus 15 SLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i-~~~ 93 (247)
T cd04143 15 AIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-CRL 93 (247)
T ss_pred HHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHH
Confidence 5789999999999999999988888888999999999999999999998888899999999999999999999999 788
Q ss_pred HHHHhhc----------CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 83 IPELRHY----------APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 83 ~~~i~~~----------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
...+... ..+.|+++||||+|+.... .+..+++.+++.......++++||++|.|++++|
T Consensus 94 ~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~----------~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 94 REQILETKSCLKNKTKENVKIPMVICGNKADRDFPR----------EVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred HHHHHHhhcccccccccCCCCcEEEEEECccchhcc----------ccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 7777542 2479999999999996533 3677777777664423389999999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
++|+..+..
T Consensus 164 ~~L~~~~~~ 172 (247)
T cd04143 164 RALFSLAKL 172 (247)
T ss_pred HHHHHHhcc
Confidence 999997643
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=7.2e-28 Score=170.29 Aligned_cols=145 Identities=32% Similarity=0.536 Sum_probs=129.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|..++.||+++.+.+.+.+++..+.+++|||||++++..++..++++++++++|||++++.+|+.+ ..|
T Consensus 17 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~ 95 (164)
T cd04145 17 ALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKF 95 (164)
T ss_pred HHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888899999999999999999999999999999999999999999999999 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+.+.. .+.|+++++||+|+.... .+..+++..+++..+. +++++||++|.|++++|+++++.+
T Consensus 96 ~~~~~~~~~~~~~piiiv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 96 HTQILRVKDRDEFPMILVGNKADLEHQR----------KVSREEGQELARKLKI-PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHhCCCCCCEEEEeeCccccccc----------eecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 88777643 579999999999996544 3677788889988887 899999999999999999998754
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.3e-27 Score=169.09 Aligned_cols=144 Identities=28% Similarity=0.424 Sum_probs=125.2
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||.+..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++.+++++ ..
T Consensus 15 sli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 93 (161)
T cd04124 15 KLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SK 93 (161)
T ss_pred HHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHH-HH
Confidence 57889999999999999987544 45677788899999999999999999999999999999999999999999998 79
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+.+..++.|+++|+||+|+.. ....+...+++..++ +++++||++|.|++++|+.+++.+.+
T Consensus 94 ~~~~i~~~~~~~p~ivv~nK~Dl~~-------------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 94 WYEELREYRPEIPCIVVANKIDLDP-------------SVTQKKFNFAEKHNL-PLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHhCCCCcEEEEEECccCch-------------hHHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999987767899999999999843 122445567777776 89999999999999999999988765
No 77
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5.4e-28 Score=178.23 Aligned_cols=148 Identities=30% Similarity=0.471 Sum_probs=130.0
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEE-CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+++++.|.+.+.||+|..+ .+.+.+ ++..+.+++|||+|++++..++..++++++++++|||++++.||+++ .
T Consensus 17 sLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l-~ 95 (211)
T cd04111 17 SLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHV-H 95 (211)
T ss_pred HHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHH-H
Confidence 57899999999999999998555 466766 56789999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 81 KWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 81 ~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.|+..+.+.. ..+|++|||||+|+.... .++.+++..+++.+++ .++++||++|.|++++|++|++.
T Consensus 96 ~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 96 DWLEEARSHIQPHRPVFILVGHKCDLESQR----------QVTREEAEKLAKDLGM-KYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred HHHHHHHHhcCCCCCeEEEEEEcccccccc----------ccCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHH
Confidence 8998887654 357899999999997644 3788889999999996 89999999999999999999998
Q ss_pred HhCC
Q 030337 159 VLQP 162 (179)
Q Consensus 159 i~~~ 162 (179)
+.+.
T Consensus 165 ~~~~ 168 (211)
T cd04111 165 IYER 168 (211)
T ss_pred HHHH
Confidence 7654
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1.7e-27 Score=173.86 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=128.7
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCcccccc--------CcccccCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~ 73 (179)
+|+.+|+.+.|.+.|.||++..+ .+.+.++++.+.++||||+|.+.+... ....++++|++|+|||++++.
T Consensus 15 sLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~ 94 (198)
T cd04142 15 AIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD 94 (198)
T ss_pred HHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH
Confidence 57889999999999999998554 466778999999999999997655322 223578999999999999999
Q ss_pred hHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCCcH
Q 030337 74 SYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQNV 148 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Sa~~~~~i 148 (179)
||+.+ ..|...+.... .++|+++||||+|+.... .++.+.+..+++ ..++ +|+++||++|.|+
T Consensus 95 S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~e~Sak~g~~v 162 (198)
T cd04142 95 SFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR----------FAPRHVLSVLVRKSWKC-GYLECSAKYNWHI 162 (198)
T ss_pred HHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccc----------cccHHHHHHHHHHhcCC-cEEEecCCCCCCH
Confidence 99998 78887776542 579999999999996543 256666666655 4566 8999999999999
Q ss_pred HHHHHHHHHHHhCCchhhh-----hccCCCCCcccC
Q 030337 149 KAVFDAAIKVVLQPPKQKK-----KKKKSHRACSIL 179 (179)
Q Consensus 149 ~~~f~~l~~~i~~~~~~~~-----~~~~~~~~c~~~ 179 (179)
+++|+.+++.++.+.+... ++.--...|.||
T Consensus 163 ~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 163 LLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 9999999998886544422 222223458876
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.1e-27 Score=169.12 Aligned_cols=147 Identities=25% Similarity=0.480 Sum_probs=131.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||+|..+. ..+.+++..+.+.||||+|++++..++..++++++++++|||++++.+|+.+ ..
T Consensus 19 sLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~-~~ 97 (168)
T cd01866 19 CLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TS 97 (168)
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 578899999999999999986664 6677888889999999999999999888999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..++... ++.|+++||||.|+.... .++.+++..++...+. .++++||+++.|++++|.++++.+.
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRR----------EVSYEEGEAFAKEHGL-IFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccccc----------CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999887765 689999999999997544 3778888899998888 8999999999999999999998876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 167 ~ 167 (168)
T cd01866 167 E 167 (168)
T ss_pred h
Confidence 4
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=2.1e-27 Score=168.29 Aligned_cols=145 Identities=30% Similarity=0.511 Sum_probs=129.0
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||++..+ .+.+..++..+.+++||++|++++..++..++++++++|+|||++++.+|+++ ..
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 96 (165)
T cd01868 18 NLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENV-ER 96 (165)
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999999665 47788888889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCC-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.+..+ ++|+++||||+|+.... .+..++...++...++ .++++||++|.|++++|++++..+
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLR----------AVPTEEAKAFAEKNGL-SFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccc----------cCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence 9998887764 69999999999997544 3677788888888887 899999999999999999998765
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.4e-27 Score=169.09 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=126.0
Q ss_pred eeehhhhhCCCC-CcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.||+.+.|. ++|.||++..+. +.+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+ .
T Consensus 19 sli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~ 97 (169)
T cd01892 19 ALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYC-A 97 (169)
T ss_pred HHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHH-H
Confidence 578999999999 999999998775 6678889889999999999999999999999999999999999999999988 7
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.|+..+... .++|+++|+||+|+.+... +...++.++++.++...++++||++|.|++++|+.+++.+.
T Consensus 98 ~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 98 EVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 888766432 3799999999999965332 33445677788888755799999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 167 ~ 167 (169)
T cd01892 167 Y 167 (169)
T ss_pred C
Confidence 5
No 82
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=3.2e-27 Score=166.76 Aligned_cols=145 Identities=29% Similarity=0.480 Sum_probs=129.6
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.+.||++..+. ..+.+++..+.+++||++|++.|..++..++++++++++|||++++.+|+.+ ..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 93 (161)
T cd04113 15 CLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEAL-PT 93 (161)
T ss_pred HHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 578999999999999999986654 6677888889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..++... ++.|+++|+||.|+.... .++.+++..+++..++ .++++||+++.|++++|+++++.+
T Consensus 94 ~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 94 WLSDARALASPNIVVILVGNKSDLADQR----------EVTFLEASRFAQENGL-LFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred HHHHHHHhCCCCCeEEEEEEchhcchhc----------cCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHhC
Confidence 988887665 689999999999997644 3778889999999996 899999999999999999998753
No 83
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=4e-27 Score=167.98 Aligned_cols=145 Identities=26% Similarity=0.427 Sum_probs=128.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCcccc-ccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|.+.+.||++..+. +.+.+++..+.++||||+|+++++ .++..+++++|++++|||++++.+|+.+ .
T Consensus 17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 95 (170)
T cd04115 17 CLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSL-P 95 (170)
T ss_pred HHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhH-H
Confidence 578899999999999999986554 778889999999999999999887 5788899999999999999999999999 7
Q ss_pred HHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC---CCcHHHHHHHH
Q 030337 81 KWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT---QQNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~---~~~i~~~f~~l 155 (179)
.|+..+.... .++|+++|+||+|+..... ++.+++.++++..++ +++++||++ +.++.++|..+
T Consensus 96 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 96 SWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEeccCCcCCCCHHHHHHHH
Confidence 8998888765 5799999999999976543 778888999999887 899999999 89999999999
Q ss_pred HHHH
Q 030337 156 IKVV 159 (179)
Q Consensus 156 ~~~i 159 (179)
++.+
T Consensus 165 ~~~~ 168 (170)
T cd04115 165 AHKL 168 (170)
T ss_pred HHHh
Confidence 9865
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=2.7e-27 Score=167.93 Aligned_cols=146 Identities=28% Similarity=0.442 Sum_probs=126.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccc-cccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++++.|.++|.||.+..+.+.+.++++.+.+++|||+|++++ ...+..+++++|++|+|||++++.||+.+ ..
T Consensus 14 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 92 (165)
T cd04146 14 ALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEI-SQ 92 (165)
T ss_pred HHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHH-HH
Confidence 57889999999999999998777777888999999999999999863 44567789999999999999999999999 78
Q ss_pred HHHHHhhcC---CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC-CcHHHHHHHHHH
Q 030337 82 WIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ-QNVKAVFDAAIK 157 (179)
Q Consensus 82 ~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~~i~~~f~~l~~ 157 (179)
|+..+.... .+.|+++||||+|+.... .++.+++..+++..+. .++++||++| .|++++|+.+++
T Consensus 93 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 93 LKQLIREIKKRDREIPVILVGNKADLLHYR----------QVSTEEGEKLASELGC-LFFEVSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCchHHhC----------ccCHHHHHHHHHHcCC-EEEEeCCCCCchhHHHHHHHHHH
Confidence 888877653 379999999999986544 3778888999999997 8999999999 599999999998
Q ss_pred HHh
Q 030337 158 VVL 160 (179)
Q Consensus 158 ~i~ 160 (179)
.+.
T Consensus 162 ~~~ 164 (165)
T cd04146 162 EVR 164 (165)
T ss_pred HHh
Confidence 664
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=4.1e-27 Score=173.46 Aligned_cols=148 Identities=26% Similarity=0.476 Sum_probs=132.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. +.+.+++..+.+++|||+|++.+..++..++++++++|+|||++++.+|+.+ ..
T Consensus 21 tLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l-~~ 99 (210)
T PLN03108 21 CLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-AS 99 (210)
T ss_pred HHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HH
Confidence 478899999999999999986664 6788899899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+.... .++.+++.++++.+++ .++++||+++.|++++|+++++.++
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCcccc----------CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988776654 579999999999997644 3788899999999998 8999999999999999999999887
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
++
T Consensus 169 ~~ 170 (210)
T PLN03108 169 KK 170 (210)
T ss_pred HH
Confidence 54
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=1.1e-26 Score=164.40 Aligned_cols=145 Identities=27% Similarity=0.446 Sum_probs=124.5
Q ss_pred eeehhhhhC--CCCCcccCceeecee-eEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHH
Q 030337 3 FIYIICNYS--LGKQDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 78 (179)
Q Consensus 3 ~l~~~~~~~--~f~~~~~pt~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 78 (179)
+|+.++.++ .|.++|.||+|..+. +.+.++ +..+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+
T Consensus 15 sl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 94 (164)
T cd04101 15 AFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENC 94 (164)
T ss_pred HHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH
Confidence 467788765 799999999986654 556664 5779999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 79 AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 79 ~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..|+..+.....+.|+++||||+|+.+... +....+..++..+++ .++++||++|.|++++|+.+++.
T Consensus 95 -~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 95 -SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred -HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCCChHHHHHHHHHH
Confidence 799998887766799999999999966443 666667777777787 79999999999999999999986
Q ss_pred H
Q 030337 159 V 159 (179)
Q Consensus 159 i 159 (179)
+
T Consensus 163 ~ 163 (164)
T cd04101 163 F 163 (164)
T ss_pred h
Confidence 5
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=6.3e-26 Score=168.31 Aligned_cols=145 Identities=23% Similarity=0.332 Sum_probs=124.0
Q ss_pred eeehhhhhCCCC-CcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccccCccccc-CccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNYSLGK-QDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|+.+|..+.|. ..+.||++ +.+.+++.+++..+.+.+|||+|++. .....+++ ++|++++|||++++.+|+.+
T Consensus 15 sLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~- 91 (221)
T cd04148 15 SLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERA- 91 (221)
T ss_pred HHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHH-
Confidence 578899999997 88899987 56668888999999999999999982 23345666 99999999999999999998
Q ss_pred HHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 80 KKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 80 ~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
..|+..+.... .+.|+++|+||+|+.... .++.+++..++..+++ .++++||++|.||+++|+++++
T Consensus 92 ~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~----------~v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 92 SELRIQLRRNRQLEDRPIILVGNKSDLARSR----------EVSVQEGRACAVVFDC-KFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEChhccccc----------eecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHH
Confidence 78888887654 479999999999996544 3777788888888887 8999999999999999999999
Q ss_pred HHhC
Q 030337 158 VVLQ 161 (179)
Q Consensus 158 ~i~~ 161 (179)
++..
T Consensus 161 ~~~~ 164 (221)
T cd04148 161 QIRL 164 (221)
T ss_pred HHHh
Confidence 8863
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=8.2e-26 Score=166.62 Aligned_cols=149 Identities=29% Similarity=0.550 Sum_probs=127.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.| +.+.||.|..+. +.+.+++..+.+.||||+|+++|..++..++++++++|+|||++++++|+.+...
T Consensus 29 sli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~ 107 (211)
T PLN03118 29 SLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDV 107 (211)
T ss_pred HHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 46788888888 568899986654 6677888889999999999999999999999999999999999999999999556
Q ss_pred HHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|...+.... .+.|+++||||+|+.... .++.+++..+++..++ .++++||++|.|++++|++|.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~----------~i~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRESER----------DVSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccC----------ccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 777766543 368999999999997544 3677788888888887 899999999999999999999988
Q ss_pred hCCc
Q 030337 160 LQPP 163 (179)
Q Consensus 160 ~~~~ 163 (179)
...+
T Consensus 177 ~~~~ 180 (211)
T PLN03118 177 MEVP 180 (211)
T ss_pred Hhhh
Confidence 7654
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=7.6e-26 Score=159.54 Aligned_cols=144 Identities=33% Similarity=0.557 Sum_probs=127.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|...+.|+.+..+ .+.+.+++..+.+++|||||++++..++..++++++++++|||++++++|+.+ ..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~ 93 (161)
T cd01861 15 SIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DK 93 (161)
T ss_pred HHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 57899999999999999998544 57788888889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
|+..+.... .+.|+++++||+|+.... .+..++...+++..+. .++++||+++.|++++|+++.+.
T Consensus 94 ~~~~~~~~~~~~~~iilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 94 WIDDVRDERGNDVIIVLVGNKTDLSDKR----------QVSTEEGEKKAKELNA-MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHhCCCCCEEEEEEEChhccccC----------ccCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHh
Confidence 988887655 369999999999996433 3677888888888887 89999999999999999999875
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=1.3e-25 Score=158.63 Aligned_cols=145 Identities=33% Similarity=0.556 Sum_probs=129.3
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||.|..+ .+.+.+++..+.+.|||++|++++...+..++++++++++|||++++.+|+.+ ..
T Consensus 16 sli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 94 (163)
T cd01860 16 SLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKA-KS 94 (163)
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999988999999766 47888899999999999999999999998999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.... +++|+++++||+|+.... .++.+++..+++..+. .++++||++|.|+.++|+++++.+
T Consensus 95 ~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 95 WVKELQRNASPNIIIALVGNKADLESKR----------QVSTEEAQEYADENGL-LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccC----------cCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence 988887766 679999999999987533 2677788888998886 899999999999999999999875
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.7e-25 Score=159.25 Aligned_cols=149 Identities=28% Similarity=0.492 Sum_probs=128.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|++++.++.|.+.+.||++..+. +.+.+++..+.+++||++|++.+..++..++++++++|+|||++++.+++.+ ..
T Consensus 15 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~ 93 (172)
T cd01862 15 SLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DS 93 (172)
T ss_pred HHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 578999999999999999985554 6778888899999999999999999999999999999999999999999988 77
Q ss_pred HHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 WIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
|...+.... .+.|+++|+||+|+.... .+..+....+++..+...++++||++|.|++++|++++
T Consensus 94 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 94 WRDEFLIQASPSDPENFPFVVLGNKIDLEEKR----------QVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred HHHHHHHhcCccCCCCceEEEEEECccccccc----------ccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 877665443 279999999999997433 25677778888888855899999999999999999999
Q ss_pred HHHhCC
Q 030337 157 KVVLQP 162 (179)
Q Consensus 157 ~~i~~~ 162 (179)
+.+++.
T Consensus 164 ~~~~~~ 169 (172)
T cd01862 164 RKALEQ 169 (172)
T ss_pred HHHHhc
Confidence 988765
No 92
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-28 Score=170.56 Aligned_cols=147 Identities=28% Similarity=0.395 Sum_probs=137.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
++++||+.|.|..+|.-|||..|. ..+.++++.+++.+|||+|++.|..+...||++|.+.++||+-+|..||+.. ..
T Consensus 35 smiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~-~~ 113 (246)
T KOG4252|consen 35 SMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEAT-LE 113 (246)
T ss_pred HHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHH-HH
Confidence 578999999999999999997665 7788888899999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|++.+...+..+|.++|.||+|+.++.. +...+++.+++.+.+ .++.+|++...|+..+|..|+..+.+
T Consensus 114 w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 114 WYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988775 888999999999998 89999999999999999999887654
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.9e-25 Score=157.78 Aligned_cols=147 Identities=34% Similarity=0.602 Sum_probs=130.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.+.||++..+. ..+.+++..+.+++||++|++++...+..+++++|++|+|||++++.+++.+ ..
T Consensus 15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~ 93 (164)
T smart00175 15 SLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENL-KN 93 (164)
T ss_pred HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HH
Confidence 578899999999999999986654 6777888889999999999999999999999999999999999999999998 67
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+..+. +++|+++|+||+|+.... .+..+.+..+++..++ .++++||++|.|++++|+++.+.+.
T Consensus 94 ~l~~~~~~~~~~~pivvv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 94 WLKELREYADPNVVIMLVGNKSDLEDQR----------QVSREEAEAFAEEHGL-PFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred HHHHHHHhCCCCCeEEEEEEchhccccc----------CCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999888766 689999999999986533 3677788889988887 7999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 163 ~ 163 (164)
T smart00175 163 K 163 (164)
T ss_pred h
Confidence 3
No 94
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=1.3e-25 Score=161.44 Aligned_cols=163 Identities=29% Similarity=0.461 Sum_probs=135.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||++..+...+.+++..+.+++|||+|++++..++..++..++++++|||+++..+++.+ ..|
T Consensus 16 tl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 94 (180)
T cd04137 16 SLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVV-KVI 94 (180)
T ss_pred HHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999887788888888889999999999999999999999999999999999999999999 566
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.+.. .+.|+++|+||+|+.... .+..++...+++.++. .++++||+++.|+.++|.++.+.+.
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQR----------QVSTEEGKELAESWGA-AFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcC----------ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55555433 478999999999996533 2566667778888886 8999999999999999999999887
Q ss_pred CCchhhhhccCCCCCcccC
Q 030337 161 QPPKQKKKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~~~~~~~~~~~~~c~~~ 179 (179)
....... ...+.+|.||
T Consensus 164 ~~~~~~~--~~~~~~~~~~ 180 (180)
T cd04137 164 KVENPLD--PGQKKKCSIM 180 (180)
T ss_pred HhcCCCC--CCCCCCceeC
Confidence 5544332 2245679887
No 95
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=5.6e-25 Score=156.48 Aligned_cols=155 Identities=58% Similarity=0.969 Sum_probs=131.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++.++.|...+.||+.+.+...+..++..+.+++||++|++.+......+++.+|++++|||++++.+|......|
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (171)
T cd00157 15 CLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKW 94 (171)
T ss_pred HHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999998888888888999999999999999998888888899999999999999999999987789
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccccccccc-CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFI-DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+..+....++.|+++||||+|+........ .......+..+++.+++...+...++++||++|.|++++|+++++
T Consensus 95 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 95 IPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 988887767899999999999976442000 000112356778888999998778999999999999999999875
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=4.4e-25 Score=155.73 Aligned_cols=143 Identities=29% Similarity=0.544 Sum_probs=126.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||.+..+. ..+.+++..+.+++||++|++.+...+..+++++|++++|||++++.+|+.+ ..
T Consensus 15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 93 (161)
T cd01863 15 SLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNL-ET 93 (161)
T ss_pred HHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhH-HH
Confidence 578899999999889999987665 5567788889999999999999999999999999999999999999999998 77
Q ss_pred HHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
|+..+.... .+.|+++||||+|+.... ...++...+++..++ .++++||++|.|++++++++++.
T Consensus 94 ~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 94 WLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHh
Confidence 998888765 479999999999997432 566788889998887 89999999999999999999875
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=4.3e-25 Score=155.86 Aligned_cols=146 Identities=33% Similarity=0.551 Sum_probs=129.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+.+...++++.+.+++|||+|++.+..++..++++++++++|||++++.+|..+ ..|
T Consensus 15 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 93 (164)
T cd04139 15 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTAT-AEF 93 (164)
T ss_pred HHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999999 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.... .+.|+++|+||+|+..... ........+++.++. +++++||++|.|++++|+++.+++.
T Consensus 94 ~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 94 REQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 77777653 4799999999999975332 566777788888887 8999999999999999999998775
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=2.2e-26 Score=163.38 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=114.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|.++.|.+++.||+|..+ ..+++..+.+++||++|+++++.+|..++++++++|+|||++++.+|..+ ..|
T Consensus 14 sli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~-~~~ 89 (164)
T cd04162 14 SLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLA-RQE 89 (164)
T ss_pred HHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 57889999999999999998543 33455668999999999999999999999999999999999999999988 677
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccH----HHHHHHHHHhCCCeEEEeccCC------CCcHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT----AQGEELRKLIGSPAYIECSSKT------QQNVKAVF 152 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~Sa~~------~~~i~~~f 152 (179)
+..+....+++|+++|+||.|+..... ++. ..+..+++..++ .++++||++ +.||+++|
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCCChhHHHHHHHHH
Confidence 777755446899999999999965332 221 234556666666 788888888 99999999
Q ss_pred HHHHH
Q 030337 153 DAAIK 157 (179)
Q Consensus 153 ~~l~~ 157 (179)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98874
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=1.8e-25 Score=161.11 Aligned_cols=140 Identities=13% Similarity=0.169 Sum_probs=108.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|++++..+.|. .+.||+|..+. .+.. ..+.++|||++|+++++.+|..+++++|++|+|||+++++++..+...+
T Consensus 32 sl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l 107 (181)
T PLN00223 32 TILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 107 (181)
T ss_pred HHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHH
Confidence 477889888886 57899986553 3433 4589999999999999999999999999999999999999999884333
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC-------eEEEeccCCCCcHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP-------AYIECSSKTQQNVKAVFDA 154 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~Sa~~~~~i~~~f~~ 154 (179)
...+.... +++|++||+||.|+... .+. .++.+.+++. .++++||++|+|+.++|++
T Consensus 108 ~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~---~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 108 HRMLNEDELRDAVLLVFANKQDLPNA------------MNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
T ss_pred HHHhcCHhhCCCCEEEEEECCCCCCC------------CCH---HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHH
Confidence 33333322 57999999999998642 222 3333333332 3568999999999999999
Q ss_pred HHHHHhC
Q 030337 155 AIKVVLQ 161 (179)
Q Consensus 155 l~~~i~~ 161 (179)
|++.+..
T Consensus 173 l~~~~~~ 179 (181)
T PLN00223 173 LSNNIAN 179 (181)
T ss_pred HHHHHhh
Confidence 9988764
No 100
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=7.5e-25 Score=154.22 Aligned_cols=145 Identities=30% Similarity=0.552 Sum_probs=126.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+ ...+.+++..+.+.+||++|++.+..+++.++++++++++|||++++++++.+ ..
T Consensus 15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 93 (162)
T cd04123 15 SLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKV-KK 93 (162)
T ss_pred HHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 47789999999988888886555 46677778889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.... .+.|+++|+||+|+.... .+..+...++++..+. .++++||+++.|++++|+++.+.+
T Consensus 94 ~~~~i~~~~~~~~piiiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 94 WIKELKQMRGNNISLVIVGNKIDLERQR----------VVSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccc----------CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 988888766 479999999999997543 3667777888888887 799999999999999999998875
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=1.6e-25 Score=159.53 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=107.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|++++..+.|. .+.||+|..+. .+.. ..+.+++|||+|++++..+|+.++++++++|+|||++++.+|+++...|
T Consensus 24 sli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~ 99 (168)
T cd04149 24 TILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQEL 99 (168)
T ss_pred HHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHH
Confidence 477888888885 47899986553 3333 4589999999999999999999999999999999999999999984434
Q ss_pred HHHHhhc-CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH---hC-CCeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL---IG-SPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.+.+... .+++|++||+||+|+... ++.+++..+++. .+ ...++++||++|.|++++|++|.+
T Consensus 100 ~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 100 HRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 4444433 257999999999998541 344555554432 11 126899999999999999999975
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.8e-24 Score=153.63 Aligned_cols=150 Identities=26% Similarity=0.303 Sum_probs=118.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.++ ...+.....+++..+.+++|||+|++.+...+..++++++++++|||++++.+|+.+...|
T Consensus 15 sl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 93 (166)
T cd01893 15 SLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKW 93 (166)
T ss_pred HHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 578899999998775444 4445555566778899999999999988887788899999999999999999999985679
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
++.++...++.|+++||||+|+.+... .....+....+++.+. ...++++||++|.|++++|+.+.+.+++
T Consensus 94 ~~~i~~~~~~~pviiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 94 LPLIRRLGVKVPIILVGNKSDLRDGSS--------QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHhCCCCCEEEEEEchhcccccc--------hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 888887667899999999999976432 0011233333444443 2379999999999999999999998765
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=1.1e-24 Score=155.36 Aligned_cols=143 Identities=13% Similarity=0.169 Sum_probs=114.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+ +.||+|..+. .+.. ..+.+++|||+|++.+...|..++++++++++|||++++.++.++ ..|
T Consensus 14 sl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~-~~~ 88 (169)
T cd04158 14 TILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEA-HSE 88 (169)
T ss_pred HHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHH-HHH
Confidence 4778899988865 8999986654 3333 458999999999999999999999999999999999999999998 667
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|++||+||+|+.. .++.+++.++++..+. ..++++||++|.||+++|++|
T Consensus 89 ~~~~~~~~~~~~~piilv~NK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 89 LAKLLTEKELRDALLLIFANKQDVAG------------ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHhcChhhCCCCEEEEEeCcCccc------------CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 66665432 4689999999999953 2555666666543321 257899999999999999999
Q ss_pred HHHHhCC
Q 030337 156 IKVVLQP 162 (179)
Q Consensus 156 ~~~i~~~ 162 (179)
++.+...
T Consensus 157 ~~~~~~~ 163 (169)
T cd04158 157 SRQLVAA 163 (169)
T ss_pred HHHHhhc
Confidence 9887653
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.7e-24 Score=158.19 Aligned_cols=147 Identities=23% Similarity=0.344 Sum_probs=123.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+|+.+.|.+.+.||++....+.+.+++..+.+++||++|++.|..++..+++++|++|+|||++++.+|+.+ ..|
T Consensus 14 sll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~-~~~ 92 (198)
T cd04147 14 ALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEV-ERL 92 (198)
T ss_pred HHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788999999999999999876667788888889999999999999999888999999999999999999999999 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+.... .+.|+++|+||+|+.... +.+..+.+.+.+. ..+. .++++||++|.|++++|+++++.+
T Consensus 93 ~~~i~~~~~~~~~piilv~NK~Dl~~~~---------~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 93 REEILEVKEDKFVPIVVVGNKADSLEEE---------RQVPAKDALSTVELDWNC-GFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred HHHHHHhcCCCCCcEEEEEEcccccccc---------ccccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHHHHHHHHHh
Confidence 87776654 479999999999996521 1245545554443 3455 799999999999999999999977
Q ss_pred h
Q 030337 160 L 160 (179)
Q Consensus 160 ~ 160 (179)
.
T Consensus 163 ~ 163 (198)
T cd04147 163 N 163 (198)
T ss_pred h
Confidence 5
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=1.4e-24 Score=155.62 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=106.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||+|..+. .+.. +.+.+++|||+|++++..+|..++++++++|+|||++++.+++.+ ..|
T Consensus 28 sL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~-~~~ 102 (175)
T smart00177 28 TILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEA-REE 102 (175)
T ss_pred HHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHH
Confidence 578889889985 58899986654 3333 348999999999999999999999999999999999999999998 455
Q ss_pred HHHH-hhc-CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPEL-RHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i-~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+ ... .+++|++|||||.|+.+. .+.++..+... ...+ .++++||++|.|+.++|+||
T Consensus 103 l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 103 LHRMLNEDELRDAVILVFANKQDLPDA------------MKAAEITEKLGLHSIRDRNW-YIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred HHHHhhCHhhcCCcEEEEEeCcCcccC------------CCHHHHHHHhCccccCCCcE-EEEEeeCCCCCCHHHHHHHH
Confidence 5444 332 257999999999999642 22222222111 1122 46789999999999999999
Q ss_pred HHHHh
Q 030337 156 IKVVL 160 (179)
Q Consensus 156 ~~~i~ 160 (179)
.+.+.
T Consensus 170 ~~~~~ 174 (175)
T smart00177 170 SNNLK 174 (175)
T ss_pred HHHhc
Confidence 88653
No 106
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=3.3e-24 Score=152.37 Aligned_cols=145 Identities=28% Similarity=0.484 Sum_probs=125.2
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+ ...+.+++..+.+.+||++|++.+...+..+++.++++++|||++++.+|+.+ ..
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 100 (169)
T cd04114 22 CLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PE 100 (169)
T ss_pred HHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 46788888999999999998544 46778889889999999999999999888999999999999999999999988 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.... ..+|+++|+||+|+..... +..+....+.+.... .++++||++|.|+.++|+++.+.+
T Consensus 101 ~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 101 WLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHh
Confidence 988887765 4799999999999965442 666667777777775 899999999999999999999865
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=4.9e-24 Score=157.56 Aligned_cols=147 Identities=24% Similarity=0.410 Sum_probs=126.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.|.||+|..+. ..+..+++.+.+++|||+|++++..++..++++++++++|||++++.+|..+ ..
T Consensus 24 tLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 102 (215)
T PTZ00132 24 TFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PN 102 (215)
T ss_pred HHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 467789999999999999997665 5666788899999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+.....++|++++|||+|+.... +..+. ..+++..++ .++++||++|.|++++|.++++.+..
T Consensus 103 ~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~~-~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 103 WHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKARQ-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHhCCCCCEEEEEECccCcccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 998888776789999999999985422 33333 456677777 89999999999999999999998876
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
.+
T Consensus 170 ~p 171 (215)
T PTZ00132 170 DP 171 (215)
T ss_pred cc
Confidence 54
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=1e-24 Score=154.05 Aligned_cols=138 Identities=13% Similarity=0.150 Sum_probs=104.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||+|..+. .+.. ..+.+++|||+|++++..+|..++++++++|+|||++++.+|+.+...|
T Consensus 15 sli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~ 90 (159)
T cd04150 15 TILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREEL 90 (159)
T ss_pred HHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 478889899997 58999986553 3333 4588999999999999999999999999999999999999999984334
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHH-HHHHHH----HhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRK----LIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
...+.... .+.|++|++||+|+.+. ....+ ...+.. ..+. .++++||++|.|++++|++|.
T Consensus 91 ~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 91 QRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred HHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHHHHHHHHh
Confidence 44443322 46999999999999542 12222 222211 1122 467999999999999999986
Q ss_pred H
Q 030337 157 K 157 (179)
Q Consensus 157 ~ 157 (179)
+
T Consensus 158 ~ 158 (159)
T cd04150 158 N 158 (159)
T ss_pred c
Confidence 4
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=1.9e-24 Score=156.01 Aligned_cols=151 Identities=17% Similarity=0.269 Sum_probs=116.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEE-CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|.+. .||+|..+. ..+.. ++..+.+++|||+|++++..+|..++++++++++|||++++.+++.+ .
T Consensus 18 sli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~ 95 (183)
T cd04152 18 TVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEA-K 95 (183)
T ss_pred HHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-H
Confidence 57889999999765 799885543 34444 44679999999999999999999999999999999999999999988 6
Q ss_pred HHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-----CCeEEEeccCCCCcHHHHHH
Q 030337 81 KWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-----SPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 81 ~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~ 153 (179)
.|+..+.... .+.|+++|+||+|+... ...++...+....+ ...++++||++|.|++++|+
T Consensus 96 ~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 96 TELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 7777665543 47999999999998642 33334444432111 12578999999999999999
Q ss_pred HHHHHHhCCchhhh
Q 030337 154 AAIKVVLQPPKQKK 167 (179)
Q Consensus 154 ~l~~~i~~~~~~~~ 167 (179)
+|++.+....+..+
T Consensus 164 ~l~~~l~~~~~~~~ 177 (183)
T cd04152 164 KLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999875554443
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=4.3e-24 Score=154.07 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=107.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.. +.||+|..+. .+.. ..+.+++|||+|+++++.+|..+++++|++|+|||++++.+++.+...|
T Consensus 32 sli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l 107 (182)
T PTZ00133 32 TILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREEL 107 (182)
T ss_pred HHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 4778888899975 7899986553 3433 4489999999999999999999999999999999999999999984444
Q ss_pred HHHHhhc-CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-------CeEEEeccCCCCcHHHHHHH
Q 030337 83 IPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAYIECSSKTQQNVKAVFDA 154 (179)
Q Consensus 83 ~~~i~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~i~~~f~~ 154 (179)
.+.+... ..+.|++||+||.|+... ...++. ...++. ..++++||++|.|++++|++
T Consensus 108 ~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i---~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~ 172 (182)
T PTZ00133 108 ERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEV---TEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDW 172 (182)
T ss_pred HHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHH---HHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHH
Confidence 4443332 257899999999998542 222222 222222 14668999999999999999
Q ss_pred HHHHHhCC
Q 030337 155 AIKVVLQP 162 (179)
Q Consensus 155 l~~~i~~~ 162 (179)
|.+.+..+
T Consensus 173 l~~~i~~~ 180 (182)
T PTZ00133 173 LSANIKKS 180 (182)
T ss_pred HHHHHHHh
Confidence 99877654
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=3e-24 Score=156.86 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=108.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC-----CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 76 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 76 (179)
+|+.+|+.+.|.+++.||+|..+. +.+.++ ++.+.++||||+|+++|..++..++++++++|+|||++++.||+
T Consensus 15 SLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~ 94 (202)
T cd04102 15 SLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQ 94 (202)
T ss_pred HHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHH
Confidence 578999999999999999996664 556663 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-------------------C-CCCcEEEEEeCCCcccccccccCCCCCccccHH----HHHHHHHHh
Q 030337 77 NVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA----QGEELRKLI 132 (179)
Q Consensus 77 ~~~~~~~~~i~~~-------------------~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 132 (179)
++ ..|+..+... . +++|++|||||.|+.++.. ++.+ .+..+++..
T Consensus 95 ~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~~~~~~~~~~ia~~~ 163 (202)
T cd04102 95 NL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSGNLVLTARGFVAEQG 163 (202)
T ss_pred HH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cchHHHhhHhhhHHHhc
Confidence 99 7999888652 1 3699999999999976432 3333 345678888
Q ss_pred CCCeEEEeccCCC
Q 030337 133 GSPAYIECSSKTQ 145 (179)
Q Consensus 133 ~~~~~~e~Sa~~~ 145 (179)
+. +.++.++.+.
T Consensus 164 ~~-~~i~~~c~~~ 175 (202)
T cd04102 164 NA-EEINLNCTNG 175 (202)
T ss_pred CC-ceEEEecCCc
Confidence 98 6777777754
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.91 E-value=9.1e-24 Score=148.38 Aligned_cols=145 Identities=34% Similarity=0.589 Sum_probs=127.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||.++.+.+.+..++..+.+++||++|++.+...+..++++++++++|||+++++++.++ ..|
T Consensus 14 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 92 (160)
T cd00876 14 AITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEI-KGY 92 (160)
T ss_pred HHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788899999999999999977777788888889999999999999999888999999999999999999999998 667
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.... ..+|+++|+||+|+..... ++.+.+..+++.++. +++++||+++.|+.++|++|++.+
T Consensus 93 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 93 REQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHhhC
Confidence 66666554 3899999999999976443 677888899988886 899999999999999999998753
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=6.2e-23 Score=143.42 Aligned_cols=142 Identities=36% Similarity=0.663 Sum_probs=124.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.+.+.+.||.+..+. ..+..++..+.+.+||+||++.+...+..++++++++++|+|++++++++.+ ..
T Consensus 15 tl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~ 93 (159)
T cd00154 15 SLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENL-DK 93 (159)
T ss_pred HHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 478889999999999999986665 6677778889999999999999999999999999999999999999999999 77
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
|+..+.... .+.|+++++||+|+.... ....++...++...+. +++++||+++.|++++|+++.
T Consensus 94 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 94 WLKELKEYAPENIPIILVGNKIDLEDQR----------QVSTEEAQQFAKENGL-LFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHhCCCCCcEEEEEEcccccccc----------cccHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHh
Confidence 998888776 679999999999996333 2667888888888877 899999999999999999986
No 114
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=3.3e-23 Score=140.80 Aligned_cols=154 Identities=22% Similarity=0.437 Sum_probs=132.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+..|+++.|++++..|.|.++. +++.+.+..+.+.|||.+|++++..+.+...+++.+++++||++.+++++.+ ..
T Consensus 35 s~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi-~~ 113 (205)
T KOG1673|consen 35 SLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSI-KE 113 (205)
T ss_pred eeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHH-HH
Confidence 789999999999999999998887 8899999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+.+.+......--++||+|.|+.-+-. ++-.+.-..+++.+++.++. ..+.||+....||+++|.-+...+++
T Consensus 114 WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 114 WYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeeccccccHHHHHHHHHHHHhC
Confidence 9999988875444457899999853221 11112334678899999998 89999999999999999999988876
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
.+
T Consensus 188 L~ 189 (205)
T KOG1673|consen 188 LP 189 (205)
T ss_pred Cc
Confidence 43
No 115
>PLN00023 GTP-binding protein; Provisional
Probab=99.90 E-value=4.1e-23 Score=158.53 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=106.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC-------------CeEEEEEEEeCCCCccccccCcccccCccEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD-------------GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 68 (179)
+|+++|+.+.|.+.+.||+|..+. +.+.++ ++.+.++||||+|+++|+.++..|+++++++|+|||
T Consensus 36 SLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyD 115 (334)
T PLN00023 36 SLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHD 115 (334)
T ss_pred HHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEe
Confidence 578999999999999999997654 666664 257899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-------------CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC
Q 030337 69 LISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
++++.+|+++ ..|+..+.... .++|++|||||+|+..+.. ......+..++++++|+..++.
T Consensus 116 ITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 116 LSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----ccccccccHHHHHHHHHHcCCC
Confidence 9999999999 89999998652 2589999999999965320 0000113678999999998874
Q ss_pred e
Q 030337 136 A 136 (179)
Q Consensus 136 ~ 136 (179)
+
T Consensus 191 ~ 191 (334)
T PLN00023 191 P 191 (334)
T ss_pred c
Confidence 3
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=1.5e-23 Score=149.16 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=106.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+ |...+.||+|.. ...+..+ .+.+++||++|++.++.+|..++++++++|+|||++++.+++.+ ..|
T Consensus 14 sl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~-~~~ 88 (167)
T cd04161 14 TLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEV-KEI 88 (167)
T ss_pred HHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHH-HHH
Confidence 466777755 888999999854 3444444 48899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHH---HHHHHHHhCC-CeEEEeccCCC------CcHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ---GEELRKLIGS-PAYIECSSKTQ------QNVKA 150 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~e~Sa~~~------~~i~~ 150 (179)
+..+.... .+.|++||+||.|+..... ...... ...+++..+. ..+++|||++| .|+.+
T Consensus 89 l~~l~~~~~~~~~piliv~NK~Dl~~~~~---------~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 89 LRELLQHPRVSGKPILVLANKQDKKNALL---------GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred HHHHHcCccccCCcEEEEEeCCCCcCCCC---------HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 77765543 4799999999999965331 011111 1233333333 25677999998 89999
Q ss_pred HHHHHHH
Q 030337 151 VFDAAIK 157 (179)
Q Consensus 151 ~f~~l~~ 157 (179)
.|+||+.
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999974
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1e-22 Score=145.52 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=105.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+ +.+.+.||+|.. ...+.+++ +.+++|||+|++.++.++..++++++++++|||++++.+|+.+ ..|
T Consensus 29 sL~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 103 (173)
T cd04154 29 TILKKLLGE-DIDTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDC-KRE 103 (173)
T ss_pred HHHHHHccC-CCCCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHH
Confidence 466777766 446788998833 34455554 7899999999999999999999999999999999999999988 566
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-----hCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+... . .+.|+++|+||+|+.+. ...+++..+.+. .++ +++++||++|.|++++|+++
T Consensus 104 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 104 LKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred HHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EEEeccCCCCcCHHHHHHHH
Confidence 6555432 2 58999999999999642 233444444432 333 79999999999999999998
Q ss_pred HH
Q 030337 156 IK 157 (179)
Q Consensus 156 ~~ 157 (179)
++
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=4.5e-23 Score=145.39 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=104.2
Q ss_pred eeehhhhhCC-CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSL-GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+. +.+.+.||+|..+. .+. ...+.+++|||||++++..+|..++++++++|+|+|++++.++..+ ..
T Consensus 14 sl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~ 89 (162)
T cd04157 14 TIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVV-KD 89 (162)
T ss_pred HHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHH-HH
Confidence 4678888876 47789999984432 232 3458899999999999999999999999999999999999999887 56
Q ss_pred HHHHHhhc---C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH---HHHhCC-CeEEEeccCCCCcHHHHHH
Q 030337 82 WIPELRHY---A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLIGS-PAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 82 ~~~~i~~~---~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~e~Sa~~~~~i~~~f~ 153 (179)
|+..+.+. . .++|+++|+||+|+.... ..++.... ....+. ..++++||++|.|++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 90 ELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred HHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 66665432 1 479999999999996532 11222211 111111 2589999999999999999
Q ss_pred HHHH
Q 030337 154 AAIK 157 (179)
Q Consensus 154 ~l~~ 157 (179)
+|.+
T Consensus 158 ~l~~ 161 (162)
T cd04157 158 WLQA 161 (162)
T ss_pred HHhc
Confidence 9875
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=5e-22 Score=142.24 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=104.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+ +.||+|..+. .+.++ .+.+.+||++|++.+...|..++++++++++|+|+++++++......|
T Consensus 30 sl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l 105 (174)
T cd04153 30 TILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEEL 105 (174)
T ss_pred HHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 4778888999875 6899986653 34344 488999999999999999999999999999999999999998884334
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHH-HHHH----HHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELR----KLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
...++... .+.|+++++||+|+... .+.++. ..+. +..++ .++++||++|.|++++|++|.
T Consensus 106 ~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 106 YKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred HHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEecccCCCCCHHHHHHHHh
Confidence 43433322 47999999999998642 222222 2221 22333 689999999999999999987
Q ss_pred H
Q 030337 157 K 157 (179)
Q Consensus 157 ~ 157 (179)
+
T Consensus 173 ~ 173 (174)
T cd04153 173 S 173 (174)
T ss_pred c
Confidence 5
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=4.6e-22 Score=140.11 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=102.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||+|..+. .+ ++..+.+++|||+|++.+..+|..++++++++++|+|++++.++......|
T Consensus 14 sl~~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~ 89 (158)
T cd04151 14 TILYRLQLGEVV-TTIPTIGFNVE-TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEEL 89 (158)
T ss_pred HHHHHHccCCCc-CcCCccCcCeE-EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 467888888886 46789886543 23 334588999999999999999999999999999999999999988763444
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHH-HHHH----HHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELR----KLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
...++... .+.|+++|+||+|+.... ...+. ..+. +..+. +++++||++|.|++++|++|+
T Consensus 90 ~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 90 HAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeeccCCCCHHHHHHHHh
Confidence 44444322 479999999999986422 11121 1111 11223 699999999999999999997
Q ss_pred H
Q 030337 157 K 157 (179)
Q Consensus 157 ~ 157 (179)
+
T Consensus 157 ~ 157 (158)
T cd04151 157 N 157 (158)
T ss_pred c
Confidence 5
No 121
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.5e-21 Score=133.18 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=113.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
.|++++..+.+... .||+|-+.+ ++.+.+ +.+++||.+||++++++|..|+++.+++|||+|.+|++.+..+.+++
T Consensus 32 TILykLk~~E~vtt-vPTiGfnVE-~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL 107 (181)
T KOG0070|consen 32 TILYKLKLGEIVTT-VPTIGFNVE-TVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEEL 107 (181)
T ss_pred eeeEeeccCCcccC-CCcccccee-EEEEcc--eEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHH
Confidence 46788888888777 999996555 344454 89999999999999999999999999999999999999999997777
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH---HhCC-CeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK---LIGS-PAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
...+.... ...|+++.+||.|++..- +..+...... ..+. ..+..|||.+|.|+.+.++|+..
T Consensus 108 ~~~l~~~~l~~~~llv~aNKqD~~~al------------s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 108 HRMLAEPELRNAPLLVFANKQDLPGAL------------SAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHcCcccCCceEEEEechhhccccC------------CHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHH
Confidence 77776655 689999999999997643 3222222222 2221 35677999999999999999998
Q ss_pred HHhC
Q 030337 158 VVLQ 161 (179)
Q Consensus 158 ~i~~ 161 (179)
.+..
T Consensus 176 ~~~~ 179 (181)
T KOG0070|consen 176 NLKK 179 (181)
T ss_pred HHhc
Confidence 8754
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=2.1e-21 Score=136.70 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=104.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.. +.||+|..+. .+.. +..+.+.+|||+|++.+...|..++++++++|+|+|++++.++..+ ..|
T Consensus 14 sl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~-~~~ 89 (160)
T cd04156 14 TLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDES-QKE 89 (160)
T ss_pred HHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHH
Confidence 5788999999875 4788885443 3333 3458999999999999998899999999999999999999999988 555
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH------HHHhCCCeEEEeccCCCCcHHHHHHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL------RKLIGSPAYIECSSKTQQNVKAVFDA 154 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~e~Sa~~~~~i~~~f~~ 154 (179)
+..+.+. . .+.|+++|+||+|+... ...++.... +...+. +++++||++|.|++++|++
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCcE-EEEecccccCCChHHHHHH
Confidence 5555332 2 57999999999999642 122222211 112233 6899999999999999999
Q ss_pred HHH
Q 030337 155 AIK 157 (179)
Q Consensus 155 l~~ 157 (179)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=3.9e-21 Score=137.81 Aligned_cols=140 Identities=21% Similarity=0.306 Sum_probs=108.3
Q ss_pred eehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 83 (179)
|++++..+.+. ...||+|.+. ..+.+++ +.+.+||.+|+..+++.|+.|+.+++++|||+|.+|+..+......+.
T Consensus 30 ll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~ 105 (175)
T PF00025_consen 30 LLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELK 105 (175)
T ss_dssp HHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHH
T ss_pred HHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchh
Confidence 56666666554 4889988554 3455666 789999999999999999999999999999999999999998865655
Q ss_pred HHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-----CCeEEEeccCCCCcHHHHHHHHHH
Q 030337 84 PELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-----SPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 84 ~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
..+.... .+.|+++++||.|+.+. .+.++......... -..++.|||.+|.|+.+.|+||.+
T Consensus 106 ~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 106 ELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp HHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHh
Confidence 5555433 58999999999999753 34444444332221 125788999999999999999998
Q ss_pred HH
Q 030337 158 VV 159 (179)
Q Consensus 158 ~i 159 (179)
++
T Consensus 174 ~~ 175 (175)
T PF00025_consen 174 QI 175 (175)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=3e-21 Score=139.85 Aligned_cols=139 Identities=16% Similarity=0.239 Sum_probs=108.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.+. .+.||.+... ..+.+++ +.+.+||+||++.+...|..++++++++++|+|++++.+++.. ..|
T Consensus 34 tLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~-~~~ 108 (190)
T cd00879 34 TLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQES-KEE 108 (190)
T ss_pred HHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHH
Confidence 467888888874 6888887543 4455665 7789999999999988889999999999999999999999887 455
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh---------------CCCeEEEeccCCC
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI---------------GSPAYIECSSKTQ 145 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~e~Sa~~~ 145 (179)
+..+.... .+.|+++++||+|+.. .+..++...+++.. ....+++|||++|
T Consensus 109 ~~~i~~~~~~~~~pvivv~NK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 109 LDSLLSDEELANVPFLILGNKIDLPG------------AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred HHHHHcCccccCCCEEEEEeCCCCCC------------CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCC
Confidence 55554332 4799999999999864 24556666655431 1126899999999
Q ss_pred CcHHHHHHHHHHH
Q 030337 146 QNVKAVFDAAIKV 158 (179)
Q Consensus 146 ~~i~~~f~~l~~~ 158 (179)
.|++++|++|.+.
T Consensus 177 ~gv~e~~~~l~~~ 189 (190)
T cd00879 177 QGYGEAFRWLSQY 189 (190)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999875
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=7.8e-21 Score=134.75 Aligned_cols=130 Identities=21% Similarity=0.314 Sum_probs=99.8
Q ss_pred CCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q 030337 12 LGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA- 90 (179)
Q Consensus 12 ~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~- 90 (179)
.+...+.||++..+. .+.+++ ..+++|||||++.+..++..++++++++++|+|++++.++... ..|+..+.+..
T Consensus 29 ~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~-~~~~~~~~~~~~ 104 (167)
T cd04160 29 LPPSKITPTVGLNIG-TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEES-KSALEKVLRNEA 104 (167)
T ss_pred CcccccCCccccceE-EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHH-HHHHHHHHhChh
Confidence 345667888886653 344554 7899999999999999999999999999999999999999988 56666554432
Q ss_pred -CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh------CCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 91 -PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 91 -~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.+.|+++++||+|+... ...++...+.+.. ...+++++||++|.|+++++++|.+
T Consensus 105 ~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 105 LEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred hcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 47999999999998652 3333444443321 1137999999999999999999875
No 126
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=4.8e-21 Score=129.13 Aligned_cols=139 Identities=20% Similarity=0.303 Sum_probs=112.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
.|+..-.+|.|.++..||.|-+..+ ++...+.+.+||.|||.+|+++|+.|+++++++++|+|+.||+.......++
T Consensus 35 t~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL 111 (186)
T KOG0075|consen 35 TLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSEL 111 (186)
T ss_pred eEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHH
Confidence 3555666789999999999965553 3444589999999999999999999999999999999999999888776777
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-------CeEEEeccCCCCcHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAYIECSSKTQQNVKAVFDA 154 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~i~~~f~~ 154 (179)
...+.+.. ..+|++++|||.|++.. .+..+. ...+|. ..++.+|+++..|++.+.+|
T Consensus 112 ~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~~~l---i~rmgL~sitdREvcC~siScke~~Nid~~~~W 176 (186)
T KOG0075|consen 112 HDLLDKPSLTGIPLLVLGNKIDLPGA------------LSKIAL---IERMGLSSITDREVCCFSISCKEKVNIDITLDW 176 (186)
T ss_pred HHHhcchhhcCCcEEEecccccCccc------------ccHHHH---HHHhCccccccceEEEEEEEEcCCccHHHHHHH
Confidence 77777765 68999999999999763 333222 233333 25788999999999999999
Q ss_pred HHHHH
Q 030337 155 AIKVV 159 (179)
Q Consensus 155 l~~~i 159 (179)
|+++-
T Consensus 177 li~hs 181 (186)
T KOG0075|consen 177 LIEHS 181 (186)
T ss_pred HHHHh
Confidence 99864
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=1.4e-20 Score=136.01 Aligned_cols=139 Identities=13% Similarity=0.165 Sum_probs=104.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||.+... ..+.+++ +.+.+||++|++.++..|..++++++++++|+|++++.++... ..+
T Consensus 32 sli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~-~~~ 106 (184)
T smart00178 32 TLLHMLKNDRLA-QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAES-KRE 106 (184)
T ss_pred HHHHHHhcCCCc-ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHH-HHH
Confidence 467788888775 4567776433 2344454 7899999999999999999999999999999999999999888 455
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-----------hCCCeEEEeccCCCCcHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----------IGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~ 149 (179)
+..+.+. . .+.|+++|+||+|+... ++.++..+.... .+...+++|||++|.|++
T Consensus 107 l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 174 (184)
T smart00178 107 LDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYG 174 (184)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChH
Confidence 5444332 2 57999999999998642 344444433211 123368999999999999
Q ss_pred HHHHHHHHH
Q 030337 150 AVFDAAIKV 158 (179)
Q Consensus 150 ~~f~~l~~~ 158 (179)
++++||..+
T Consensus 175 ~~~~wl~~~ 183 (184)
T smart00178 175 EGFKWLSQY 183 (184)
T ss_pred HHHHHHHhh
Confidence 999999865
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=1.1e-20 Score=132.88 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=104.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.+ ..+.||++..+. .+.++ .+.+.+||+||++.+...+..++++++++++|||++++.++..+ ..|
T Consensus 14 sli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~-~~~ 88 (158)
T cd00878 14 TILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEA-KEE 88 (158)
T ss_pred HHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 46778888874 567888875443 34444 47899999999999999999999999999999999999999988 566
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|+++++||+|+.... ..++...... ... .+++++||++|.|++++|++|
T Consensus 89 ~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 89 LHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRR-WHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred HHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCc-EEEEEeeCCCCCCHHHHHHHH
Confidence 65554433 589999999999996532 2222222222 123 379999999999999999998
Q ss_pred HH
Q 030337 156 IK 157 (179)
Q Consensus 156 ~~ 157 (179)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 129
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.84 E-value=9.8e-20 Score=124.89 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=106.6
Q ss_pred CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q 030337 13 GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-P 91 (179)
Q Consensus 13 f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~ 91 (179)
-.+.-.||.|-. .+++.+.+ ++++|||++||..+++.|+.||...||+|+|+|.+|+..+++....+-..+.... .
T Consensus 40 ~~~~i~pt~gf~-Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerla 116 (185)
T KOG0073|consen 40 DTDTISPTLGFQ-IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLA 116 (185)
T ss_pred CccccCCcccee-eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhc
Confidence 366678888732 35565666 8999999999999999999999999999999999999999998666655555433 4
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccH---HHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITT---AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
..|++|++||.|+...-+ ..+. ....++++...+ ..+.||+.+|.++.+.++|++..+..
T Consensus 117 G~~~Lvlank~dl~~~l~---------~~~i~~~~~L~~l~ks~~~-~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 117 GAPLLVLANKQDLPGALS---------LEEISKALDLEELAKSHHW-RLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CCceEEEEecCcCccccC---------HHHHHHhhCHHHhccccCc-eEEEEeccccccHHHHHHHHHHHHHH
Confidence 699999999999974221 1111 223445566666 89999999999999999999998875
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=6.4e-20 Score=128.21 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=106.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|..++.||++..+.+ +..++ +.+.+||++|++.+...+..++++++++++|+|++++.++... ..|
T Consensus 14 sl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~ 89 (159)
T cd04159 14 TLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAA-KNE 89 (159)
T ss_pred HHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 5788999999999999999866653 33444 8899999999999999999999999999999999999999887 445
Q ss_pred HHHHhh-cC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.. .. .+.|+++|+||+|+.+.. ...+..... ...+ .+++++|+++|.|+.++|+++
T Consensus 90 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGNKNDLPGAL------------SVDELIEQMNLKSITDRE-VSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCCc------------CHHHHHHHhCcccccCCc-eEEEEEEeccCCChHHHHHHH
Confidence 444433 22 478999999999986532 111111111 1122 378999999999999999998
Q ss_pred HH
Q 030337 156 IK 157 (179)
Q Consensus 156 ~~ 157 (179)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 75
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=7.7e-20 Score=131.08 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=89.3
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
+++.+.+++|||||++.|...+..+++++|++|+|||+++..+++.. ..|..... .++|+++|+||+|+....
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~--- 135 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD--- 135 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC---
Confidence 66789999999999999999988999999999999999998777766 45543322 368999999999985421
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHH
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
......++++.+++. .++++||++|.|++++|+++.+.+
T Consensus 136 ---------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 136 ---------PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ---------HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 222344566666652 489999999999999999998865
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=134.25 Aligned_cols=163 Identities=29% Similarity=0.426 Sum_probs=123.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++.++.|.+.+.||++..+. ......+..+.+.+|||+|+++|+.+++.|+.++++++++||.++..++.++...
T Consensus 20 tl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~ 99 (219)
T COG1100 20 TLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEE 99 (219)
T ss_pred HHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHH
Confidence 478999999999999999997776 4444455589999999999999999999999999999999999997777666699
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCC--CCCccccHHHHHHHHHHh--CCCeEEEeccC--CCCcHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDH--PGAVPITTAQGEELRKLI--GSPAYIECSSK--TQQNVKAVFDA 154 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~--~~~~i~~~f~~ 154 (179)
|...+.... .+.|+++|+||+|+.......... ...+....+.....+... ....++++|++ .+.++.++|..
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~ 179 (219)
T COG1100 100 WLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKE 179 (219)
T ss_pred HHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHH
Confidence 999998887 479999999999998754210000 000112222223322222 22348999999 99999999999
Q ss_pred HHHHHhCCchh
Q 030337 155 AIKVVLQPPKQ 165 (179)
Q Consensus 155 l~~~i~~~~~~ 165 (179)
+++.+.+....
T Consensus 180 ~~~~~~~~~~~ 190 (219)
T COG1100 180 LLRKLLEEIEK 190 (219)
T ss_pred HHHHHHHhhhh
Confidence 99988765444
No 133
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.1e-20 Score=130.21 Aligned_cols=146 Identities=24% Similarity=0.353 Sum_probs=124.8
Q ss_pred eehhhhhCCCCCcccCceeeceeeEEEECCe-EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
++.|...|.|+..|.||+|......+...+. .+++..|||+|+|.+..+...|+=++.+.|++||++..-++.++ ..|
T Consensus 26 ~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~-~rw 104 (216)
T KOG0096|consen 26 FVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNV-PRW 104 (216)
T ss_pred hhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcc-hHH
Confidence 3567889999999999999888777776554 49999999999999999999999999999999999999999999 899
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
...+.+.+.++||+++|||.|..... .......+-+..++ .++++||+++.|.+..|.|+.+.+...
T Consensus 105 hrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 105 HRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred HHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeecccccccccchHHHhhhhcCC
Confidence 99999999889999999999986522 12223344555666 899999999999999999999988754
Q ss_pred c
Q 030337 163 P 163 (179)
Q Consensus 163 ~ 163 (179)
+
T Consensus 172 p 172 (216)
T KOG0096|consen 172 P 172 (216)
T ss_pred C
Confidence 3
No 134
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=8.2e-22 Score=137.76 Aligned_cols=151 Identities=24% Similarity=0.339 Sum_probs=131.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCe-EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+++.||++..|+..|..|||..+. +.+.++.+ .+++++||++||++|..+..-|++.+++.++|||+++.-+|+.. .
T Consensus 40 s~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~-s 118 (229)
T KOG4423|consen 40 SSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPV-S 118 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHH-H
Confidence 578899999999999999997775 88888764 57999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC--C---CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 81 KWIPELRHYA--P---GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~--~---~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.|...+.... + ..|+|+++||+|..+... .....+..+++++.|...+.|+|+|.+.|+.|+-..+
T Consensus 119 kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~l 189 (229)
T KOG4423|consen 119 KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQREL 189 (229)
T ss_pred HHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceeeeccccccChhHHHHHH
Confidence 8988887544 2 588999999999865432 1234677889999999999999999999999999999
Q ss_pred HHHHhCCc
Q 030337 156 IKVVLQPP 163 (179)
Q Consensus 156 ~~~i~~~~ 163 (179)
+..++-+.
T Consensus 190 Ve~~lvnd 197 (229)
T KOG4423|consen 190 VEKILVND 197 (229)
T ss_pred HHHHHhhc
Confidence 99887544
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=2.2e-18 Score=122.89 Aligned_cols=135 Identities=23% Similarity=0.288 Sum_probs=99.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++....+. .+.||.|..+ ..+..++ ..+.+||++|+..+...+..++++++++++|+|++++.++... ..|
T Consensus 29 tLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~-~~~ 103 (173)
T cd04155 29 TILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEA-GAE 103 (173)
T ss_pred HHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHH
Confidence 356666666553 4678887433 3444555 6789999999998888888899999999999999999999887 444
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC-------eEEEeccCCCCcHHHHHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP-------AYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~Sa~~~~~i~~~f~ 153 (179)
+..+.+. . .++|+++++||+|+.... . ...+.+.++.. .++++||++|.|++++|+
T Consensus 104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~---~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 104 LVELLEEEKLAGVPVLVFANKQDLATAA------------P---AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred HHHHHhChhhcCCCEEEEEECCCCccCC------------C---HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 4443332 2 479999999999985422 1 22233333331 468999999999999999
Q ss_pred HHHH
Q 030337 154 AAIK 157 (179)
Q Consensus 154 ~l~~ 157 (179)
||++
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9976
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=4.2e-18 Score=120.80 Aligned_cols=140 Identities=20% Similarity=0.176 Sum_probs=93.1
Q ss_pred eeehhhhhCCCCCc-ccC-ceeeceeeEEEECCeEEEEEEEeCCCCccccccCcc----------cccCccEEEEEEeCC
Q 030337 3 FIYIICNYSLGKQD-YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL----------SYRGADVFILAFSLI 70 (179)
Q Consensus 3 ~l~~~~~~~~f~~~-~~p-t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~----------~~~~~~~~i~v~d~~ 70 (179)
+|+.++..+.+... +.. |.+... ... ..+.+.++||||||+.... .+.. ....++++++|+|++
T Consensus 15 sli~~l~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~~~~~~~d~~l~v~d~~ 90 (168)
T cd01897 15 SLVNKLTRAKPEVAPYPFTTKSLFV-GHF--DYKYLRWQVIDTPGLLDRP-LEERNTIEMQAITALAHLRAAVLFLFDPS 90 (168)
T ss_pred HHHHHHhcCCCccCCCCCcccceeE-EEE--ccCceEEEEEECCCcCCcc-ccCCchHHHHHHHHHHhccCcEEEEEeCC
Confidence 56788888877432 211 222111 111 2234789999999985321 1111 112368999999999
Q ss_pred ChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcH
Q 030337 71 SKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 148 (179)
Q Consensus 71 ~~~s~--~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 148 (179)
++.++ +.. ..|+..+.....+.|+++|+||+|+..... +.. ..++.+..+. .++++||++|.|+
T Consensus 91 ~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~~--~~~~~~~~~~-~~~~~Sa~~~~gi 156 (168)
T cd01897 91 ETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LSE--IEEEEELEGE-EVLKISTLTEEGV 156 (168)
T ss_pred cccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HHH--HHHhhhhccC-ceEEEEecccCCH
Confidence 88754 544 567777776556799999999999965331 222 4455555554 7999999999999
Q ss_pred HHHHHHHHHHHh
Q 030337 149 KAVFDAAIKVVL 160 (179)
Q Consensus 149 ~~~f~~l~~~i~ 160 (179)
+++|+++.+.++
T Consensus 157 ~~l~~~l~~~~~ 168 (168)
T cd01897 157 DEVKNKACELLL 168 (168)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=9.3e-19 Score=121.04 Aligned_cols=122 Identities=24% Similarity=0.209 Sum_probs=90.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCC-----ccccccCcccccCccEEEEEEeCCChhhHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-----EDYNRLRPLSYRGADVFILAFSLISKASYEN 77 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 77 (179)
+|+.++..+.+ .+.||++..+. + .+|||+|+ +.+..+.. .++++|++++|||++++.++..
T Consensus 15 sL~~~l~~~~~--~~~~t~~~~~~------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~ 80 (142)
T TIGR02528 15 TLTQALQGEEI--LYKKTQAVEYN------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP 80 (142)
T ss_pred HHHHHHcCCcc--ccccceeEEEc------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC
Confidence 46778887776 35677654332 1 58999998 33444433 5899999999999999999865
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 78 VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 78 ~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
. .|...+ ..|+++|+||+|+.+.. ...+.+.++++..+..+++++||++|.|++++|+++.
T Consensus 81 ~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 81 P--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred h--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 3 454432 24999999999986422 4556677778777765799999999999999999874
No 138
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.76 E-value=2.1e-17 Score=112.39 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=124.9
Q ss_pred eehhhhhCCC--CCcccCceeeceeeEEEEC-CeEEEEEEEeCCCCccc-cccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 4 IYIICNYSLG--KQDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 4 l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
|+.+.+-|.- ..++.||+.+.|...+.-+ +..-++.|+||+|...+ ..+-..|+.-+|++++||+..|++||+.+
T Consensus 25 ileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv- 103 (198)
T KOG3883|consen 25 ILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRV- 103 (198)
T ss_pred HHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHH-
Confidence 4444444433 4668999999888766654 44557999999998877 44667799999999999999999999998
Q ss_pred HHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 80 KKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 80 ~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+.+...|.+.. ..+||+++|||.|+.+.. .+..+-+..||+.-.. ..+|++|.+...+-+.|..+..
T Consensus 104 ~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~----------~vd~d~A~~Wa~rEkv-kl~eVta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 104 ELLKKEIDKHKDKKEVPIVVLANKRDRAEPR----------EVDMDVAQIWAKREKV-KLWEVTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred HHHHHHHhhccccccccEEEEechhhcccch----------hcCHHHHHHHHhhhhe-eEEEEEeccchhhhhHHHHHHH
Confidence 66667777655 479999999999997544 4889999999999998 9999999999999999999999
Q ss_pred HHhCCchhhh
Q 030337 158 VVLQPPKQKK 167 (179)
Q Consensus 158 ~i~~~~~~~~ 167 (179)
.+.+++.++.
T Consensus 173 rl~~pqskS~ 182 (198)
T KOG3883|consen 173 RLHQPQSKST 182 (198)
T ss_pred hccCCccccc
Confidence 9988776653
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=1.7e-17 Score=115.40 Aligned_cols=142 Identities=31% Similarity=0.408 Sum_probs=112.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh-hhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 80 (179)
+|+.++..+.+...+.|+++..+. ..+..++..+.+.+||++|++.+..++..+++++++++.++|+... .+++....
T Consensus 16 tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~ 95 (161)
T TIGR00231 16 TLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILE 95 (161)
T ss_pred HHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhH
Confidence 467788888888888888886665 4466788778999999999999999988899999999999999988 77877644
Q ss_pred HHHHHHhhcCC-CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 81 KWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 81 ~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
.|...+..... +.|+++++||.|+.... ........ ....+...++++||++|.|+.++|++|-
T Consensus 96 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~-~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 96 KQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LKTHVAFL-FAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHHHHHhcccCCcEEEEEEcccCCcch-----------hhHHHHHH-HhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 67777766554 89999999999996522 23333333 3334444799999999999999999863
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=1.6e-17 Score=117.11 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=90.1
Q ss_pred eeehhhhh---CCCCCcccC--ceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhh
Q 030337 3 FIYIICNY---SLGKQDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KAS 74 (179)
Q Consensus 3 ~l~~~~~~---~~f~~~~~p--t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s 74 (179)
+|+.+++. +.|.+++.+ |++..+ ..+.+++ ...+++|||||+++|......+++++|++++|+|+++ +.+
T Consensus 15 sl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~ 92 (164)
T cd04171 15 TLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQT 92 (164)
T ss_pred HHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhH
Confidence 35667764 456555444 333322 3344442 3589999999999987766678899999999999987 444
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH---hCCCeEEEeccCCCCcHHHH
Q 030337 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL---IGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i~~~ 151 (179)
.+.+ .+ +... +..|+++|+||+|+..... ......+..+..+. .+. +++++||++|.|++++
T Consensus 93 ~~~~--~~---~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 93 REHL--EI---LELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHH--HH---HHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEEEEeCCCCcCHHHH
Confidence 4443 12 2211 2249999999999965321 00112333344443 244 7999999999999999
Q ss_pred HHHHHH
Q 030337 152 FDAAIK 157 (179)
Q Consensus 152 f~~l~~ 157 (179)
|+.+..
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998754
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.7e-17 Score=108.42 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=106.7
Q ss_pred eehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 83 (179)
|+.+...+.- ....||+|-++ +++.+.+ +++++||.+|+...+++|+.||.+..++|||.|..+.+..+++..++.
T Consensus 33 iLyKLkl~~~-~~~ipTvGFnv-etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh 108 (180)
T KOG0071|consen 33 ILYKLKLGQS-VTTIPTVGFNV-ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELH 108 (180)
T ss_pred hhhHHhcCCC-cccccccceeE-EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHH
Confidence 4444554444 34578887433 4455555 899999999999999999999999999999999999999999888888
Q ss_pred HHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHH---HHhCC-CeEEEeccCCCCcHHHHHHHHHHH
Q 030337 84 PELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR---KLIGS-PAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 84 ~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..+.... .+.|+++.+||.|++... +..++..+. +..+. +....+||.+|.++.+.|.|+.+.
T Consensus 109 ~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 109 RIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred HHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhh
Confidence 7776544 589999999999998743 333333322 22222 245679999999999999999886
Q ss_pred Hh
Q 030337 159 VL 160 (179)
Q Consensus 159 i~ 160 (179)
+.
T Consensus 177 ~~ 178 (180)
T KOG0071|consen 177 LK 178 (180)
T ss_pred cc
Confidence 53
No 142
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.8e-17 Score=110.04 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=97.8
Q ss_pred cCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEE
Q 030337 18 VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPII 96 (179)
Q Consensus 18 ~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~pii 96 (179)
.||+|.+.. ++ ..+...+++||.+|+-..++.|+.||.+.+++|+|+|.+|.+...-....++..+++.. ....++
T Consensus 47 kPtigfnve-~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~ll 123 (182)
T KOG0072|consen 47 KPTIGFNVE-TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLL 123 (182)
T ss_pred CCCCCcCcc-cc--ccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEE
Confidence 566664333 22 23558999999999999999999999999999999999999977766667777777655 568899
Q ss_pred EEEeCCCcccccccccCCCCCccccHHHHH--HHHH-HhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 97 LVGTKLDLRDDKQFFIDHPGAVPITTAQGE--ELRK-LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 97 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+++||.|..... ...+... .+.+ ......++++||.+|.|++++++||.+.+.+
T Consensus 124 v~anKqD~~~~~-----------t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 124 VFANKQDYSGAL-----------TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred EEeccccchhhh-----------hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 999999986532 1111111 1111 1122479999999999999999999998764
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=1.2e-16 Score=112.05 Aligned_cols=136 Identities=13% Similarity=0.170 Sum_probs=97.0
Q ss_pred eeehhhhhCCCCCcccCceee-ceeeEEEECCeEEEEEEEeCCCCcccccc------Cccccc--CccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~~~~i~v~d~~~~~ 73 (179)
+|+.++....+...+.|++.. .....+.+++ ..+.+|||||++.+... +..++. +++++++|+|+++++
T Consensus 11 sl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 88 (158)
T cd01879 11 TLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE 88 (158)
T ss_pred HHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch
Confidence 467778777665555554432 2335566666 57899999999876643 445554 999999999999875
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+.. .|...+... +.|+++|+||+|+..... +.. ....+++.++. +++++||.+|.|+.++++
T Consensus 89 ~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 89 RNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IKI-DLDKLSELLGV-PVVPTSARKGEGIDELKD 150 (158)
T ss_pred hHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------chh-hHHHHHHhhCC-CeEEEEccCCCCHHHHHH
Confidence 533 333334333 689999999999965432 222 34566777787 899999999999999999
Q ss_pred HHHHH
Q 030337 154 AAIKV 158 (179)
Q Consensus 154 ~l~~~ 158 (179)
++.+.
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 99875
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=1.6e-16 Score=109.34 Aligned_cols=142 Identities=38% Similarity=0.654 Sum_probs=105.9
Q ss_pred eeehhhhhCCC-CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLG-KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.. ...+.||....+.......+....+.+||++|+..+...+..++++++++++|+|++++.++... ..
T Consensus 11 tl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~ 89 (157)
T cd00882 11 SLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENV-KE 89 (157)
T ss_pred HHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 45667777666 56677776444446666667788999999999998888778899999999999999999999988 45
Q ss_pred H-HHHH-hhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHH-HHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 W-IPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~-~~~i-~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
| .... .......|+++++||+|+..... ..... .......... +++++|+.++.|+.++++++.
T Consensus 90 ~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 90 WLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGV-PYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCC-cEEEEecCCCCChHHHHHHHh
Confidence 4 2222 22335899999999999975432 22221 3334444454 899999999999999999986
No 145
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=7.2e-17 Score=114.56 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=82.9
Q ss_pred EEEEEEeCCCCcc----ccccCccc---ccCccEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCc
Q 030337 36 VNLGLWDTAGQED----YNRLRPLS---YRGADVFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~----~~~~~~~~---~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~ 104 (179)
..+.+|||||+.. ...+...+ +.++|++++|+|++++ .+++.+ ..|.+.+.... .+.|+++|+||+|+
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhc
Confidence 4799999999742 22233333 3459999999999999 789888 78888877654 36899999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 105 RDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.+.. ...+....+.... +. .++++||+++.|++++|+++.+.
T Consensus 127 ~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 127 LDEE-----------ELFELLKELLKELWGK-PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCch-----------hhHHHHHHHHhhCCCC-CEEEEecCCCCCHHHHHHHHHhh
Confidence 6543 2233444455543 44 79999999999999999999875
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=5.4e-17 Score=118.12 Aligned_cols=133 Identities=13% Similarity=0.014 Sum_probs=91.1
Q ss_pred eeehhhhh--CCCCCcc------------cCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEE
Q 030337 3 FIYIICNY--SLGKQDY------------VPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 67 (179)
Q Consensus 3 ~l~~~~~~--~~f~~~~------------~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 67 (179)
+|+.+++. +.|...+ .++.|..+. +...++++.+.+++|||||+++|...+..+++++|++++||
T Consensus 17 sL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~ 96 (194)
T cd01891 17 TLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLV 96 (194)
T ss_pred HHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEE
Confidence 46777776 7776654 234454333 44555666689999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-------hCCCeEEEe
Q 030337 68 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------IGSPAYIEC 140 (179)
Q Consensus 68 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~ 140 (179)
|+++.. +... ..|+..+.. .+.|+++|+||+|+..... ....+++..+... .+. +++++
T Consensus 97 d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~iv~~ 162 (194)
T cd01891 97 DASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELGATEEQLDF-PVLYA 162 (194)
T ss_pred ECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhCCccccCcc-CEEEe
Confidence 999743 2222 233444333 2689999999999964321 1123444444432 245 78999
Q ss_pred ccCCCCcHH
Q 030337 141 SSKTQQNVK 149 (179)
Q Consensus 141 Sa~~~~~i~ 149 (179)
||++|.|+.
T Consensus 163 Sa~~g~~~~ 171 (194)
T cd01891 163 SAKNGWASL 171 (194)
T ss_pred ehhcccccc
Confidence 999997773
No 147
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.6e-16 Score=110.02 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=93.6
Q ss_pred eeehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccc--------cCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.++.... +...+.++..+........++ ..+.+|||||...+.. .+...++++|++++|+|..++
T Consensus 12 sl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 89 (157)
T cd01894 12 TLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG 89 (157)
T ss_pred HHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc
Confidence 3555666554 444555554444455555555 6799999999987554 233467899999999999887
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+.... .+...++.. +.|+++|+||+|+.+... . ......++...++++|++++.|++++|
T Consensus 90 ~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 90 LTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred CCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEecccCCCHHHHH
Confidence 655443 233344433 599999999999965331 1 223344565578999999999999999
Q ss_pred HHHHHHH
Q 030337 153 DAAIKVV 159 (179)
Q Consensus 153 ~~l~~~i 159 (179)
+++++++
T Consensus 151 ~~l~~~~ 157 (157)
T cd01894 151 DAILELL 157 (157)
T ss_pred HHHHhhC
Confidence 9998753
No 148
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=1.9e-16 Score=132.22 Aligned_cols=115 Identities=25% Similarity=0.305 Sum_probs=91.3
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
++..+.++||||||+++|...+..+++.+|++|+|+|+++..+++.. ..|...+. .++|+++|+||+|+....
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~--- 138 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD--- 138 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC---
Confidence 56779999999999999999899999999999999999998777766 55554433 268999999999985421
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
......++.+.++.. .++++||++|.|++++|+++++.+-.+
T Consensus 139 ---------~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 139 ---------PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred ---------HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 122334555656652 489999999999999999999987544
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.70 E-value=3.5e-16 Score=110.75 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=94.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|...+.++....+. ..+..+ +....+.+|||||++.|..++..+++.+|++++|+|+++....+..
T Consensus 15 sli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-- 92 (168)
T cd01887 15 TLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-- 92 (168)
T ss_pred HHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH--
Confidence 577888888887765554432222 233333 2457899999999999988888889999999999999985322221
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH----HhC-CCeEEEeccCCCCcHHHHHHHH
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIG-SPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
..+..+.. .+.|+++|+||+|+..... .........+.. ..+ ..+++++||++|.|+.++++++
T Consensus 93 ~~~~~~~~--~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 93 EAIKLAKA--ANVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred HHHHHHHH--cCCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHH
Confidence 11222333 3689999999999864221 000111111111 111 1378999999999999999999
Q ss_pred HHHH
Q 030337 156 IKVV 159 (179)
Q Consensus 156 ~~~i 159 (179)
.+..
T Consensus 162 ~~~~ 165 (168)
T cd01887 162 LLLA 165 (168)
T ss_pred HHhh
Confidence 8754
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.5e-16 Score=119.92 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=87.0
Q ss_pred EEEEEEeCCCCcc----ccccCc---ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQED----YNRLRP---LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~----~~~~~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~ 105 (179)
..+.+||+||.-. ...+.. .+++.++++++|+|++++++++++ ..|...+..+. .+.|+++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 4689999999632 112222 345679999999999998889988 78988887764 368999999999996
Q ss_pred cccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 106 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+... +..+....+++..+. .++++||+++.|++++++++.+.+..
T Consensus 285 ~~~~----------~~~~~~~~~~~~~~~-~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 285 DEEE----------EREKRAALELAALGG-PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred Cchh----------HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5332 333344555555565 79999999999999999999987753
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=3.9e-16 Score=127.67 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=97.0
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCc----------cccccC-cccccCccEEEEEEeC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR-PLSYRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-~~~~~~~~~~i~v~d~ 69 (179)
+|+.+++.+.+ ...+.+|..+.+...+.+++.. +.+|||+|.. .|..+. ..+++++|++++|+|+
T Consensus 226 SLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da 303 (472)
T PRK03003 226 SLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDA 303 (472)
T ss_pred HHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 46778887765 2333444445556777778755 5799999953 333322 2357899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
+++.+++++ .++..+.. .+.|+++|+||+|+..... ......+...........+++++||++|.|++
T Consensus 304 ~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~ 371 (472)
T PRK03003 304 SEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVPWAPRVNISAKTGRAVD 371 (472)
T ss_pred CCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCCCCCEEEEECCCCCCHH
Confidence 999999887 45555544 3789999999999964221 00111122222222233478999999999999
Q ss_pred HHHHHHHHHHh
Q 030337 150 AVFDAAIKVVL 160 (179)
Q Consensus 150 ~~f~~l~~~i~ 160 (179)
++|+.+.+.+-
T Consensus 372 ~lf~~i~~~~~ 382 (472)
T PRK03003 372 KLVPALETALE 382 (472)
T ss_pred HHHHHHHHHHH
Confidence 99999988663
No 152
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.67 E-value=6.9e-16 Score=113.02 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=93.4
Q ss_pred eeehhhhhCCCCC--cccCceeeceeeEEEECCeEEEEEEEeCCCCccc---------cccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGKQ--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+.. .+.+|+... ...+.+++. ..+.+|||+|.... ...+ ..+.++|++++|+|+++
T Consensus 56 tLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~ 132 (204)
T cd01878 56 TLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD 132 (204)
T ss_pred HHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC
Confidence 3566777766432 234444322 233444442 37889999997321 1111 13678999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 72 KASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
+.++... ..|...+.... .+.|+++|+||+|+.+... . .......+. +++++||+++.|+.+
T Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~-~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 133 PDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP-DAVFISAKTGEGLDE 195 (204)
T ss_pred CChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC-ceEEEEcCCCCCHHH
Confidence 9988876 67777776654 4689999999999965331 1 133444444 799999999999999
Q ss_pred HHHHHHHHH
Q 030337 151 VFDAAIKVV 159 (179)
Q Consensus 151 ~f~~l~~~i 159 (179)
++++|.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998753
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=2.2e-16 Score=115.32 Aligned_cols=138 Identities=17% Similarity=0.097 Sum_probs=88.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCC-----------CccccccCccccc----CccEEEEEE
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSYR----GADVFILAF 67 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~----~~~~~i~v~ 67 (179)
+|+.++..+.|...+.|+.... ...+.++ .+.+||||| ++.++..+..++. .++++++|+
T Consensus 24 sLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~ 98 (201)
T PRK04213 24 TLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVV 98 (201)
T ss_pred HHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEE
Confidence 4678888888876666654321 2233333 589999999 5667776666654 356777777
Q ss_pred eCCChhhHHH---------HHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC--C-
Q 030337 68 SLISKASYEN---------VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS--P- 135 (179)
Q Consensus 68 d~~~~~s~~~---------~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 135 (179)
|.++...+.. ....+...+.. .++|+++|+||+|+.+.. .+...++++.++. .
T Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 163 (201)
T PRK04213 99 DGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------DEVLDEIAERLGLYPPW 163 (201)
T ss_pred eCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------HHHHHHHHHHhcCCccc
Confidence 7654322200 00112222222 379999999999985421 2345566666664 1
Q ss_pred -----eEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 136 -----AYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 136 -----~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.++++||++| |++++|++|.+.+..
T Consensus 164 ~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 164 RQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 4799999999 999999999987643
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.65 E-value=1.3e-15 Score=108.60 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=91.2
Q ss_pred eeehhhhhCCC-CCcccC-ceeeceeeEEEEC-CeEEEEEEEeCCCCcc----ccccC---cccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG-KQDYVP-TVFDNFSANVVVD-GSTVNLGLWDTAGQED----YNRLR---PLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f-~~~~~p-t~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~~~~i~v~d~~~~ 72 (179)
+|++++.+..+ ..++.+ |+... ...+.++ + ..+.+|||||... ...++ ..++++++++++|+|++++
T Consensus 11 tll~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 11 TLLNALTNAKPKVANYPFTTLEPN-LGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred HHHHHHhcCCccccCCCceeecCc-ceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCC
Confidence 35666666654 233333 33322 2223344 4 5689999999732 22222 2347789999999999998
Q ss_pred ------hhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 030337 73 ------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138 (179)
Q Consensus 73 ------~s~~~~~~~~~~~i~~~~--------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (179)
.+++.. ..|...+.... .+.|+++|+||+|+..... .............+. .++
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 155 (176)
T cd01881 88 DDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELALEEGA-EVV 155 (176)
T ss_pred ccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHhcCCCC-CEE
Confidence 577776 55655555332 3699999999999965331 222212233333444 799
Q ss_pred EeccCCCCcHHHHHHHHHHH
Q 030337 139 ECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 139 e~Sa~~~~~i~~~f~~l~~~ 158 (179)
++||+++.|++++++++...
T Consensus 156 ~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 156 PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEehhhhcCHHHHHHHHHhh
Confidence 99999999999999998764
No 155
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.65 E-value=5.3e-16 Score=104.04 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=76.2
Q ss_pred eeehhhhhCCCC--CcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNYSLGK--QDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~--~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|++++..+.+. ..+.++.+..+. ....+......+++||++|++.+...+...+.++|++++|||++++.|++.+.
T Consensus 14 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~ 93 (119)
T PF08477_consen 14 SLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLS 93 (119)
T ss_dssp HHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHH
Confidence 478889988887 223333344444 45556777777999999999998888888899999999999999999999872
Q ss_pred --HHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 80 --KKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 80 --~~~~~~i~~~~~~~piilv~nK~D 103 (179)
..|+..+++..+++|++|||||.|
T Consensus 94 ~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 94 QLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred HHHHHHHHHHccCCCCCEEEEEeccC
Confidence 236777777666899999999998
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.64 E-value=3.6e-15 Score=124.17 Aligned_cols=138 Identities=14% Similarity=0.193 Sum_probs=94.0
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.+.+...+ ...+.+++. ..+.+|||||++.|..++...+..+|++|+|+|+++....+.. ..
T Consensus 102 SLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~ 179 (587)
T TIGR00487 102 SLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EA 179 (587)
T ss_pred HHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HH
Confidence 56788888888766555443222 234445432 2789999999999999998899999999999999874433322 22
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC--------CCeEEEeccCCCCcHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--------SPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+ ..... .++|+++++||+|+... ..+.....+...+ -..++++||++|.|++++|+
T Consensus 180 i-~~~~~--~~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~ 243 (587)
T TIGR00487 180 I-SHAKA--ANVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLD 243 (587)
T ss_pred H-HHHHH--cCCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHH
Confidence 2 22222 26899999999999642 2223333332222 13689999999999999999
Q ss_pred HHHHH
Q 030337 154 AAIKV 158 (179)
Q Consensus 154 ~l~~~ 158 (179)
++..+
T Consensus 244 ~I~~~ 248 (587)
T TIGR00487 244 MILLQ 248 (587)
T ss_pred hhhhh
Confidence 98753
No 157
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.64 E-value=4.1e-15 Score=111.87 Aligned_cols=119 Identities=21% Similarity=0.178 Sum_probs=88.7
Q ss_pred CceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEE
Q 030337 19 PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIIL 97 (179)
Q Consensus 19 pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piil 97 (179)
|.+||.+.....-++..+...|. +++..+.+.+++++|++++|||+++|. +++.+ ..|+..+.. .++|++|
T Consensus 1 ~~vGD~V~~~~~~~~~~~i~~i~-----eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vI 72 (245)
T TIGR00157 1 LVVGDRVVWEPGNVVKVYGGAIA-----ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPII 72 (245)
T ss_pred CCCCcEEEEEecCCCceEEEEEe-----cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEE
Confidence 34566555332212333444454 488899999999999999999999988 89988 889877654 4799999
Q ss_pred EEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 98 VGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 98 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
|+||+|+.++.. +..+.+..+. ..+. .++++||++|.|++++|+.+.+
T Consensus 73 V~NK~DL~~~~~----------~~~~~~~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 73 VLNKIDLLDDED----------MEKEQLDIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEECcccCCCHH----------HHHHHHHHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 999999965332 3334444444 4776 8999999999999999998764
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=3.1e-15 Score=121.01 Aligned_cols=134 Identities=20% Similarity=0.157 Sum_probs=99.1
Q ss_pred eeehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC--------cccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+. +..++.+|..+.+...+.+++ +.+.+|||+|...+...+ ..+++++|++++|||++++
T Consensus 218 SLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~ 295 (442)
T TIGR00450 218 SLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP 295 (442)
T ss_pred HHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 4677777764 456666665666667788887 557899999986654322 3578999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+++.. |+..+.. .+.|+++|+||+|+... ....+++.++. +++++||++ .||+++|
T Consensus 296 ~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 296 LTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-NSSNLSAKQ-LKIKALV 352 (442)
T ss_pred CChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-ceEEEEEec-CCHHHHH
Confidence 887754 6555543 36899999999999531 12344556666 789999998 6999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+.+.+.+.+
T Consensus 353 ~~L~~~i~~ 361 (442)
T TIGR00450 353 DLLTQKINA 361 (442)
T ss_pred HHHHHHHHH
Confidence 998887754
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=2.1e-15 Score=123.36 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=94.2
Q ss_pred eeehhhhhCCCC-CcccCcee-eceeeEEEECCeEEEEEEEeCCCCcc--------ccccCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLGK-QDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+.+. ....|.+. +.....+.+++ ..+.+|||||.+. +...+..+++.+|++|+|+|+++.
T Consensus 53 SL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~ 130 (472)
T PRK03003 53 TLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG 130 (472)
T ss_pred HHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 467788877652 22333332 33445555666 4588999999863 223345578999999999999998
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.++.. ..|...++.. +.|+++|+||+|+... ..+....+ .++....+++||++|.|++++|
T Consensus 131 ~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~-------------~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 131 ATATD--EAVARVLRRS--GKPVILAANKVDDERG-------------EADAAALW--SLGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCHHH--HHHHHHHHHc--CCCEEEEEECccCCcc-------------chhhHHHH--hcCCCCeEEEEcCCCCCcHHHH
Confidence 76654 2455555543 7999999999998531 11222222 3344356799999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++++.+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999998754
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=4.9e-15 Score=116.74 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=91.8
Q ss_pred eeehhhhhCCCC-CcccCceeeceeeEEEE-CCeEEEEEEEeCCCCc---------cccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE---------DYNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~~~~~~-~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.++++..+. .++..|.-+.....+.+ ++ ..+.+|||+|.. .|...+ ..+.++|++++|+|+++
T Consensus 204 SLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~ 280 (351)
T TIGR03156 204 TLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASD 280 (351)
T ss_pred HHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCC
Confidence 466777776543 33322323344555666 44 478999999972 232222 24789999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 72 KASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
+.+++++ ..|...+.... .+.|+++|+||+|+..... + .... . +..+++++||++|.|+++
T Consensus 281 ~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 281 PDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYPEAVFVSAKTGEGLDL 342 (351)
T ss_pred CchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCCCEEEEEccCCCCHHH
Confidence 9988876 56666666544 4789999999999954221 1 1111 1 223689999999999999
Q ss_pred HHHHHHHH
Q 030337 151 VFDAAIKV 158 (179)
Q Consensus 151 ~f~~l~~~ 158 (179)
+++++.+.
T Consensus 343 L~~~I~~~ 350 (351)
T TIGR03156 343 LLEAIAER 350 (351)
T ss_pred HHHHHHhh
Confidence 99998764
No 161
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=7.3e-15 Score=114.81 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=83.7
Q ss_pred EEEEEEeCCCCcccc----ccCccc---ccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYN----RLRPLS---YRGADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKL 102 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~----~~~~~~---~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~ 102 (179)
..+.||||||..... .+...+ ++.++++++|+|+++. .+++++ ..|.+++..+. .+.|++||+||+
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 578999999975322 233333 4569999999999987 677777 67777776553 378999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+.... ...+..+.+++.++. .++++||+++.|++++++++.+.+
T Consensus 284 DL~~~~-----------~~~~~~~~l~~~~~~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 284 DLLDEE-----------ELAELLKELKKALGK-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCChH-----------HHHHHHHHHHHHcCC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 996532 223445556666676 799999999999999999998754
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.62 E-value=9.7e-15 Score=114.73 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=93.0
Q ss_pred eeehhhhhCCCC---CcccCceeeceeeEEEECCeEEEEEEEeCCCCc-cccccCc-------ccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGK---QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRLRP-------LSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~---~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~~-------~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+. +.+.+|. +.....+..++ .++.+|||||.. .+..+.. ..++++|++++|+|.++
T Consensus 67 TLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~ 143 (339)
T PRK15494 67 TLLNRIIGEKLSIVTPKVQTTR-SIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK 143 (339)
T ss_pred HHHHHHhCCceeeccCCCCCcc-CcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 467788877764 3333342 33344555666 468999999984 3332221 24789999999999765
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHH
Q 030337 72 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKA 150 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~ 150 (179)
++......|+..++.. +.|+++|+||+|+... ...++.+++...+ ...++++||++|.|+++
T Consensus 144 --s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 144 --SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPDSLLFPISALSGKNIDG 206 (339)
T ss_pred --CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCCcEEEEEeccCccCHHH
Confidence 4444423456666544 4677899999998531 1234455555443 24799999999999999
Q ss_pred HHHHHHHHHhC
Q 030337 151 VFDAAIKVVLQ 161 (179)
Q Consensus 151 ~f~~l~~~i~~ 161 (179)
+|++|...+..
T Consensus 207 L~~~L~~~l~~ 217 (339)
T PRK15494 207 LLEYITSKAKI 217 (339)
T ss_pred HHHHHHHhCCC
Confidence 99999997754
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=4.1e-15 Score=120.80 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=96.2
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCcccccc--------CcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+.+ ..++..|..+.+...+.+++ ..+.+|||+|.+.+... ...+++++|++++|+|++++
T Consensus 230 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~ 307 (449)
T PRK05291 230 SLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP 307 (449)
T ss_pred HHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC
Confidence 46677777653 44555555566666777777 56899999998764432 22468899999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.++++. ..|.. ..+.|+++|+||+|+..... .. ...+. .++++||++|.|+++++
T Consensus 308 ~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 308 LTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-PVIRISAKTGEGIDELR 362 (449)
T ss_pred CChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-ceEEEEeeCCCCHHHHH
Confidence 888765 44433 34689999999999964321 11 22333 78999999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++.+.+..
T Consensus 363 ~~L~~~l~~ 371 (449)
T PRK05291 363 EAIKELAFG 371 (449)
T ss_pred HHHHHHHhh
Confidence 999997753
No 164
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-15 Score=106.25 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=96.6
Q ss_pred ccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcE
Q 030337 17 YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPI 95 (179)
Q Consensus 17 ~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~pi 95 (179)
-.||+|-+... +.+++ ..+.+||.+||+..+++|..||..+|++|+++|+++++.|+.....+-..+.... .++|+
T Consensus 53 i~~tvgLnig~-i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~ 129 (197)
T KOG0076|consen 53 ITPTVGLNIGT-IEVCN--APLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPV 129 (197)
T ss_pred eecccceeecc-eeecc--ceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 45666643332 22333 5689999999999999999999999999999999999999988444444444333 58999
Q ss_pred EEEEeCCCcccccccccCCCCCccccHHHHHHHH---HHhCC--CeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 96 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR---KLIGS--PAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 96 ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
++.+||.|+.+.. +..+..... +..+. ..+..+||.+|.||++...|+++.+-.+
T Consensus 130 L~lankqd~q~~~------------~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 130 LVLANKQDLQNAM------------EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcchhhhhhhh------------hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999997643 222333222 22222 3578899999999999999999987654
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.61 E-value=1.5e-14 Score=117.14 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=94.8
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC-----------cccccCccEEEEEEeC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------PLSYRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~~~~~~~~~i~v~d~ 69 (179)
+|+.+++.+.. ..++.+|..+.+...+..++. .+.+|||||..++.... ..+++.+|++++|+|+
T Consensus 187 sLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~ 264 (429)
T TIGR03594 187 TLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDA 264 (429)
T ss_pred HHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 35666665542 344444555555555666664 68899999986654432 2357899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH-HHHH---HhCCCeEEEeccCCC
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRK---LIGSPAYIECSSKTQ 145 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~e~Sa~~~ 145 (179)
+++.+.++. .+...+.+. +.|+++|+||+|+.... ...++.. .+.. ..+..+++++||++|
T Consensus 265 ~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g 329 (429)
T TIGR03594 265 TEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKLPFLDFAPIVFISALTG 329 (429)
T ss_pred CCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhcccCCCCceEEEeCCCC
Confidence 999888775 444444443 68999999999996211 1111211 2222 223348999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 030337 146 QNVKAVFDAAIKVVL 160 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~ 160 (179)
.|++++|+++.+.+.
T Consensus 330 ~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 330 QGVDKLLDAIDEVYE 344 (429)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888654
No 166
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=1.3e-14 Score=122.87 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=95.2
Q ss_pred eeehhhhhCCCCCcccCcee---eceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|+.++....|.....+.+. ..+......++....+.+|||||++.|..++..++..+|++|+|+|+++....+..
T Consensus 259 SLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~- 337 (742)
T CHL00189 259 TLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTI- 337 (742)
T ss_pred HHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhH-
Confidence 46677777777655443332 12233344455668999999999999999998899999999999999885333322
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH-------HHHhC-CCeEEEeccCCCCcHHHH
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-------RKLIG-SPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~e~Sa~~~~~i~~~ 151 (179)
..| ..+.. .++|+++++||+|+.... .+...+. ...++ ..+++++||++|.|++++
T Consensus 338 E~I-~~~k~--~~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 338 EAI-NYIQA--ANVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred HHH-HHHHh--cCceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 222 12222 368999999999996422 1111111 22233 247999999999999999
Q ss_pred HHHHHHHH
Q 030337 152 FDAAIKVV 159 (179)
Q Consensus 152 f~~l~~~i 159 (179)
|+++....
T Consensus 402 le~I~~l~ 409 (742)
T CHL00189 402 LETILLLA 409 (742)
T ss_pred HHhhhhhh
Confidence 99988753
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.58 E-value=2.3e-14 Score=103.16 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=84.8
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
...+.+|||||+..+...+..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.....
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~----- 131 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED----- 131 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc-----
Confidence 46899999999998888888899999999999999987765543 44444444 3799999999999975221
Q ss_pred CCCccccHHHHHHHHHHhC-------------CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 115 PGAVPITTAQGEELRKLIG-------------SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-------------~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
......+..+..+..+ ..+++++||++|.|+++++.++.+.+-
T Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 132 ---LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ---HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 0112233334443322 347899999999999999999998763
No 168
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.58 E-value=3e-14 Score=108.79 Aligned_cols=141 Identities=12% Similarity=0.025 Sum_probs=93.8
Q ss_pred eeehhhhhCCCC--CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccc--------cCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+.+. ....+|...........++ .++.+|||||...... ....+++++|++++|+|+++.
T Consensus 15 TLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~ 92 (270)
T TIGR00436 15 TLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW 92 (270)
T ss_pred HHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 356677766553 2333444433322222233 5689999999754211 123467899999999999988
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+.+ ..+...+... +.|+++|+||+|+.+.. ...+....++...+...++++||++|.|+++++
T Consensus 93 ~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 93 NGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 7764 2344455443 68999999999996422 222344455555555578999999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++.+.+-.
T Consensus 157 ~~l~~~l~~ 165 (270)
T TIGR00436 157 AFIEVHLPE 165 (270)
T ss_pred HHHHHhCCC
Confidence 999987754
No 169
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=98.03 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q 030337 11 SLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA 90 (179)
Q Consensus 11 ~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~ 90 (179)
+.-..+..||-|- -.+.+..++ .+.+++||++|+...++.|..||.+.|++|||.|.+|...|+++..++.+.+....
T Consensus 39 sED~~hltpT~GF-n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK 116 (185)
T KOG0074|consen 39 SEDPRHLTPTNGF-NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK 116 (185)
T ss_pred cCChhhccccCCc-ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh
Confidence 3344556777763 234555544 47899999999999999999999999999999999999999998777777776655
Q ss_pred -CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH--HH-HhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 91 -PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL--RK-LIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 91 -~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..+|+++.+||.|+...-. ++ +.+..+ +- ....+.+.+|||.++.++....+|+...
T Consensus 117 l~~vpvlIfankQdlltaa~----------~e-eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 117 LAEVPVLIFANKQDLLTAAK----------VE-EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred hhccceeehhhhhHHHhhcc----------hH-HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcC
Confidence 6899999999999965331 11 122211 11 1122467889999999999998888753
No 170
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.57 E-value=3e-14 Score=119.11 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=96.6
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCcccccc------Ccccc--cCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~v~d~~~~~ 73 (179)
+|+.++.+..+.-...|... +.....+.+++ ..+++|||||++.+... ...++ +++|++++|+|.++.+
T Consensus 9 SL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le 86 (591)
T TIGR00437 9 TLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE 86 (591)
T ss_pred HHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch
Confidence 46777877776444444443 23334555666 45799999999887654 22333 4799999999999754
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
.. ..+..++.+. +.|+++|+||+|+.++.. +. .+.+.+.+.++. +++++||++|.|++++++
T Consensus 87 r~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 87 RN----LYLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEGRGIERLKD 148 (591)
T ss_pred hh----HHHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCCCCHHHHHH
Confidence 32 1233333333 799999999999965432 33 346778888897 899999999999999999
Q ss_pred HHHHHH
Q 030337 154 AAIKVV 159 (179)
Q Consensus 154 ~l~~~i 159 (179)
++.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 171
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.57 E-value=4.1e-14 Score=120.76 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=92.0
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.+...+.+.+-... ...+.+++ ..+.||||||++.|..++...++.+|++|+|+|+++...-+.. ..
T Consensus 305 SLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~-e~ 381 (787)
T PRK05306 305 SLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTI-EA 381 (787)
T ss_pred HHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHH-HH
Confidence 46677777777655444332111 13344555 5789999999999999998889999999999999984322222 22
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHH--HHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA--QGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
| ..+.. .++|++|++||+|+...+. ..+..+ ....++..++ ..+++++||++|.|++++|+++...
T Consensus 382 i-~~a~~--~~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 382 I-NHAKA--AGVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred H-HHHHh--cCCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 2 12222 2699999999999964210 001110 0111233333 2379999999999999999998753
No 172
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.57 E-value=2.1e-14 Score=119.85 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=98.6
Q ss_pred eehhhhh---CCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHH
Q 030337 4 IYIICNY---SLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYE 76 (179)
Q Consensus 4 l~~~~~~---~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~ 76 (179)
|+.++.. +.|.+++.+++...+. ..+..++ ..+.+||+||+++|.......+.++|++++|+|+++ +.+++
T Consensus 16 Li~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~e 93 (581)
T TIGR00475 16 LLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGE 93 (581)
T ss_pred HHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHH
Confidence 5566663 5676666665543332 3455555 789999999999998888888999999999999998 45555
Q ss_pred HHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC---CCeEEEeccCCCCcHHHHH
Q 030337 77 NVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG---SPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 77 ~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f 152 (179)
.+ .+ +... ++| +++|+||+|+.+... .....++...+.+..+ ..+++++||++|.|+++++
T Consensus 94 hl--~i---l~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 94 HL--AV---LDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred HH--HH---HHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHH
Confidence 44 22 2222 567 999999999965331 0012344556665543 2379999999999999999
Q ss_pred HHHHHHHh
Q 030337 153 DAAIKVVL 160 (179)
Q Consensus 153 ~~l~~~i~ 160 (179)
..+...+-
T Consensus 159 ~~L~~l~~ 166 (581)
T TIGR00475 159 KELKNLLE 166 (581)
T ss_pred HHHHHHHH
Confidence 98877554
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=3.1e-14 Score=115.55 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=91.9
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCcc--------ccccCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.++..+.. ..++.++..+.....+.+++ +.+.+|||||.+. +......+++++|++++|+|++++
T Consensus 16 tL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~ 93 (435)
T PRK00093 16 TLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG 93 (435)
T ss_pred HHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 35666766653 34444443455556666777 7899999999986 222234568899999999999986
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+..+. .+...+++. +.|+++|+||+|+.... ....++ ..++...++++||++|.|+.++|
T Consensus 94 ~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 94 LTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCEEEEeeCCCCHHHHH
Confidence 544332 222233333 68999999999974311 122222 34566468999999999999999
Q ss_pred HHHHHHH
Q 030337 153 DAAIKVV 159 (179)
Q Consensus 153 ~~l~~~i 159 (179)
+.++...
T Consensus 155 ~~I~~~~ 161 (435)
T PRK00093 155 DAILEEL 161 (435)
T ss_pred HHHHhhC
Confidence 9998843
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=1.7e-14 Score=105.73 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=78.7
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
.++.+|||||+++|...+...+.++|++++|+|++++ .+++.+ . .+... ...|+++|+||+|+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~----~~~~~-~~~~iiivvNK~Dl~~~~~-- 154 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-A----ALEIM-GLKHIIIVQNKIDLVKEEQ-- 154 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-H----HHHHc-CCCcEEEEEEchhccCHHH--
Confidence 6799999999999877777778899999999999974 233332 2 22221 2357999999999964221
Q ss_pred cCCCCCccccHHHHHHHHHHh---CCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.....+...++++.. +. +++++||++|.|++++|+++.+.+-.+
T Consensus 155 ------~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ------ALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ------HHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 001123333444332 33 789999999999999999999877554
No 175
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=3.8e-14 Score=118.55 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=88.9
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
+++.+.++||||||+.+|...+..+++.+|++|+|+|+++....+.. ..|..... .+.|+++|+||+|+....
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~--- 142 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD--- 142 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc---
Confidence 56679999999999999998888999999999999999987766655 45543332 268999999999986422
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
......++.+.+++. .++.+||++|.|++++++++++.+-.+
T Consensus 143 ---------~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 143 ---------PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred ---------HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 112233444555552 489999999999999999999877543
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.55 E-value=3.7e-14 Score=103.03 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=76.3
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccccc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 112 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 112 (179)
++.+.+.+|||||+..+........+.+|++++|+|+++..+.+.. ..+. .... .+.|+++++||+|+.....
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~--- 137 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEE--- 137 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHH---
Confidence 3467899999999965433222335678999999999986554443 2222 1111 2579999999999964221
Q ss_pred CCCCCccccHHHHHHH-HHH------hCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 113 DHPGAVPITTAQGEEL-RKL------IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~------~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.....++..+. ... .+. +++++||++|.|++++++++..++.-+
T Consensus 138 -----~~~~~~~~~~~l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 138 -----RERKIEKMKKKLQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred -----HHHHHHHHHHHHHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence 01112222221 111 233 799999999999999999999987643
No 177
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.54 E-value=2.3e-14 Score=101.11 Aligned_cols=102 Identities=19% Similarity=0.109 Sum_probs=75.7
Q ss_pred EEeCCCCccccccC----cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 40 LWDTAGQEDYNRLR----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 40 i~D~~G~~~~~~~~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+|||||.......+ ...++++|++++|+|+++..++.. .|+..+ ..+.|+++++||+|+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~--------- 105 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD--------- 105 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc---------
Confidence 79999973222111 123789999999999999887632 343333 23679999999999854
Q ss_pred CCccccHHHHHHHHHHhCC-CeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 116 GAVPITTAQGEELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+...++++.++. .+++++||++|.|++++|+.+.+.+.
T Consensus 106 ----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 106 ----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 334566777777775 47999999999999999999987654
No 178
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.53 E-value=1.8e-13 Score=95.38 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=86.8
Q ss_pred eehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCcccccc--------CcccccCccEEEEEEeCCChh
Q 030337 4 IYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRGADVFILAFSLISKA 73 (179)
Q Consensus 4 l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~ 73 (179)
|+.++....+ ...+.++..+.....+.+++ ..+.+|||+|...+... ....+.++|++++|+|++++.
T Consensus 17 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 94 (157)
T cd04164 17 LLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL 94 (157)
T ss_pred HHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 4455555543 22232332232233444454 57899999998665432 224677999999999999988
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+..+. ..+.. ..+.|+++|+||+|+.+... . .....+ .+++++||+++.|++++++
T Consensus 95 ~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 95 DEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceEEEECCCCCCHHHHHH
Confidence 87766 32222 34799999999999975432 1 223334 3799999999999999999
Q ss_pred HHHHHH
Q 030337 154 AAIKVV 159 (179)
Q Consensus 154 ~l~~~i 159 (179)
++.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988753
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.52 E-value=7.6e-14 Score=113.06 Aligned_cols=138 Identities=20% Similarity=0.205 Sum_probs=95.5
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCc--------cccccCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+.. ..++.++..+.....+.+++ ..+.+|||||.. .+......+++.+|++++|+|..+.
T Consensus 14 tL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~ 91 (429)
T TIGR03594 14 TLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG 91 (429)
T ss_pred HHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence 35667766553 34444444445556666777 469999999963 3334455678999999999999986
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+..+. .+...+++. +.|+++|+||+|+..... ...+ +..++..+++++||++|.|+.+++
T Consensus 92 ~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--------------~~~~-~~~lg~~~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 92 LTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--------------VAAE-FYSLGFGEPIPISAEHGRGIGDLL 152 (429)
T ss_pred CCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc--------------cHHH-HHhcCCCCeEEEeCCcCCChHHHH
Confidence 555442 334444443 689999999999864321 1112 345676679999999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++.+.+..
T Consensus 153 ~~i~~~l~~ 161 (429)
T TIGR03594 153 DAILELLPE 161 (429)
T ss_pred HHHHHhcCc
Confidence 999988754
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.52 E-value=4.2e-14 Score=103.69 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=77.2
Q ss_pred eeehhhhhCCCCCcccCceeeceee-EEEECCeEEEEEEEeCCCCccccccCcccccCc-cEEEEEEeCCCh-hhHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFSLISK-ASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d~~~~-~s~~~~~ 79 (179)
+|+.++..+.|.+.+.++.. .+.. .....+..+.+.|||+||+++++..+..+++++ +++|+|+|+++. .++..+.
T Consensus 15 sL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 15 ALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred HHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 47788999999887655532 2222 121124457899999999999998888899998 999999999998 6888774
Q ss_pred HHHHHHHhh---cCCCCcEEEEEeCCCcccc
Q 030337 80 KKWIPELRH---YAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 80 ~~~~~~i~~---~~~~~piilv~nK~D~~~~ 107 (179)
..|+..+.. ..+.+|+++++||+|+...
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 444444332 2258999999999999754
No 181
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.51 E-value=7.6e-14 Score=119.25 Aligned_cols=141 Identities=20% Similarity=0.179 Sum_probs=96.5
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCcc----------ccccC-cccccCccEEEEEEeC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR-PLSYRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~~~i~v~d~ 69 (179)
+|+.+++.+.+ ..++.+|..+.+...+.+++.. +.+|||+|..+ |..+. ...++.+|++++|+|+
T Consensus 465 SLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDa 542 (712)
T PRK09518 465 SLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDA 542 (712)
T ss_pred HHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEEC
Confidence 46778887764 4556666666666667777755 56999999632 22111 2347899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH-HHHH---HhCCCeEEEeccCCC
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRK---LIGSPAYIECSSKTQ 145 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~e~Sa~~~ 145 (179)
++..++++. .+...+... +.|+++|+||+|+.+.. ..+... .+.. .....+.+.+||++|
T Consensus 543 t~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~------------~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 543 SQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEF------------RRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred CCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChh------------HHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 999888886 344444433 68999999999996422 111111 1111 122346789999999
Q ss_pred CcHHHHHHHHHHHHhC
Q 030337 146 QNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~~ 161 (179)
.|++++|+.+.+.+.+
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887654
No 182
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=9e-13 Score=93.25 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=87.4
Q ss_pred eehhhhhCCCC--CcccCceeeceeeEEEECCeEEEEEEEeCCCCcccccc-----------CcccccCccEEEEEEeCC
Q 030337 4 IYIICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RPLSYRGADVFILAFSLI 70 (179)
Q Consensus 4 l~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~~~i~v~d~~ 70 (179)
|+.+++.+.+. .+..++........+..++. .+.+|||+|....... ....++++|++++|+|.+
T Consensus 18 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~ 95 (174)
T cd01895 18 LVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDAT 95 (174)
T ss_pred HHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCC
Confidence 55666665432 22222322333344555663 4789999997543211 112467899999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHH-HHHHHHHhC---CCeEEEeccCCCC
Q 030337 71 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIG---SPAYIECSSKTQQ 146 (179)
Q Consensus 71 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~e~Sa~~~~ 146 (179)
++.+.... .+...+... +.|+++++||+|+..... ...+. ...+.+.++ ..+++++||+++.
T Consensus 96 ~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (174)
T cd01895 96 EGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLPFLDYAPIVFISALTGQ 161 (174)
T ss_pred CCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence 99887654 344444332 689999999999965321 12222 222223332 2479999999999
Q ss_pred cHHHHHHHHHHH
Q 030337 147 NVKAVFDAAIKV 158 (179)
Q Consensus 147 ~i~~~f~~l~~~ 158 (179)
|+.++++.+.+.
T Consensus 162 ~i~~~~~~l~~~ 173 (174)
T cd01895 162 GVDKLFDAIDEV 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.50 E-value=1.6e-13 Score=99.65 Aligned_cols=143 Identities=18% Similarity=0.094 Sum_probs=91.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCC----------ccccccCcccccC---ccEEEEEEeC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRPLSYRG---ADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~~---~~~~i~v~d~ 69 (179)
+|+.+++.+.|.+.+.|+.|....... ......+.||||||. +.+..+...+++. ++++++++|.
T Consensus 39 sli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 116 (196)
T PRK00454 39 SLINALTNRKNLARTSKTPGRTQLINF--FEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDS 116 (196)
T ss_pred HHHHHHhCCCCcccccCCCCceeEEEE--EecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEec
Confidence 577888888888888888764332211 111267999999994 2333334445554 4678889998
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
+++.+.... .+...+... +.|+++++||+|+..... .....+.+......... .++++||+++.|++
T Consensus 117 ~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~~~~-~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 117 RHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKFGDD-EVILFSSLKKQGID 183 (196)
T ss_pred CCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHhcCC-ceEEEEcCCCCCHH
Confidence 876554432 222233322 689999999999964321 01112223344443344 78999999999999
Q ss_pred HHHHHHHHHHh
Q 030337 150 AVFDAAIKVVL 160 (179)
Q Consensus 150 ~~f~~l~~~i~ 160 (179)
++++.+.+.+.
T Consensus 184 ~l~~~i~~~~~ 194 (196)
T PRK00454 184 ELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 184
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=3e-13 Score=109.02 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=90.3
Q ss_pred eeehhhhhCCCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCccc--cccCc------ccccCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~~~~~i~v~d~~~~~ 73 (179)
+|+.+++...+. .+...+.-+.....+.+++. ..+.+|||+|..+. ...+. ..++++|++++|+|++++.
T Consensus 212 SLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~ 290 (426)
T PRK11058 212 TLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVR 290 (426)
T ss_pred HHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCcc
Confidence 356666655442 22222222233344555542 25679999998432 11222 2468999999999999998
Q ss_pred hHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 74 SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
+++.+ ..|...+.... .+.|+++|+||+|+.... ... .. ....+...++.+||++|.|+++++
T Consensus 291 ~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-----------~~~--~~--~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 291 VQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-----------EPR--ID--RDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred HHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCch-----------hHH--HH--HHhcCCCceEEEeCCCCCCHHHHH
Confidence 88876 44544444433 379999999999995421 111 11 112344335889999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++.+.+..
T Consensus 355 e~I~~~l~~ 363 (426)
T PRK11058 355 QALTERLSG 363 (426)
T ss_pred HHHHHHhhh
Confidence 999998753
No 185
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=6.3e-13 Score=106.78 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=83.7
Q ss_pred EEEEEEeCCCCcc----ccccCccc---ccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCC
Q 030337 36 VNLGLWDTAGQED----YNRLRPLS---YRGADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKL 102 (179)
Q Consensus 36 ~~~~i~D~~G~~~----~~~~~~~~---~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~ 102 (179)
..+.+||+||... ...+...+ ++.++++++|+|+++. .+++++ ..|...+..+. .+.|++||+||+
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCC
Confidence 5789999999643 22233344 4569999999999865 577776 67777777654 378999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
|+.. ..+....+.+.++. +++++||+++.|++++++++.+.+...
T Consensus 285 DL~~--------------~~e~l~~l~~~l~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPE--------------AEENLEEFKEKLGP-KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcC--------------CHHHHHHHHHHhCC-cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9832 12345666666675 799999999999999999999877543
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=4.4e-13 Score=114.63 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=88.8
Q ss_pred eeehhhhhCCC--CCcccCce-eeceeeEEEECCeEEEEEEEeCCCCcc--------ccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLG--KQDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~-~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+ .+. .|.+ -+.......+++ ..+.+|||||.+. +......+++.+|++|+|+|+++
T Consensus 290 SL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 290 TLVNRILGRREAVVED-TPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV 366 (712)
T ss_pred HHHHHHhCCCceeecC-CCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 46677776554 222 2222 233333444555 5688999999764 22233446789999999999987
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHH
Q 030337 72 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 151 (179)
..+..+ ..|...++.. +.|+++|+||+|+.... .....+ ..++....+++||++|.|+.++
T Consensus 367 ~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--------------~~~~~~-~~lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 367 GLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE--------------YDAAEF-WKLGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred CCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch--------------hhHHHH-HHcCCCCeEEEECCCCCCchHH
Confidence 543332 2455555543 79999999999985311 111222 1234445689999999999999
Q ss_pred HHHHHHHHhC
Q 030337 152 FDAAIKVVLQ 161 (179)
Q Consensus 152 f~~l~~~i~~ 161 (179)
|++++..+..
T Consensus 428 l~~i~~~l~~ 437 (712)
T PRK09518 428 LDEALDSLKV 437 (712)
T ss_pred HHHHHHhccc
Confidence 9999998754
No 187
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.47 E-value=3.4e-13 Score=112.33 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=75.9
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.+.+|||||++.|..++..+++.+|++++|+|+++ +.+++.+ . .++.. ++|+++++||+|+.........
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~~--~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRMY--KTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHHc--CCCEEEEEECCCccchhhhccC
Confidence 38899999999999999899999999999999997 5565554 2 22222 6899999999999643210000
Q ss_pred CC-------CCccccH-------HHHHHHHH-------------HhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 114 HP-------GAVPITT-------AQGEELRK-------------LIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 114 ~~-------~~~~~~~-------~~~~~~~~-------------~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.+ ....+.. ....++.+ ..+..+++.+||++|.|+++++.++...
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00 0000000 00011111 1223478999999999999999987653
No 188
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.46 E-value=7.5e-13 Score=92.87 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=77.9
Q ss_pred CeEEEEEEEeCCCCccccc--------cCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 33 GSTVNLGLWDTAGQEDYNR--------LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
...+.+.+|||+|...... .....+..+|++++|+|++++.+... ..+...+... +.|+++|+||+|+
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl 123 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDL 123 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhc
Confidence 3347899999999764332 22345788999999999998832221 2344444433 5899999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 105 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..... ...+....+....+..+++++|++++.|+++++++|.+.
T Consensus 124 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 124 VKDKE----------DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred cccHH----------HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 64221 223344445555544589999999999999999998764
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.45 E-value=1.3e-12 Score=90.67 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=79.2
Q ss_pred EEEEEEEeCCCCccccccCc-------ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRP-------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~-------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
...+.+|||+|...+..... .+++.+|++++|+|.+++.+.... . |...... .+.|+++|+||.|+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCCh
Confidence 46799999999877654433 378899999999999999877765 2 3333333 37999999999999754
Q ss_pred cccccCCCCCccccHHH--HHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 108 KQFFIDHPGAVPITTAQ--GEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.. ..... ...........+++++||+++.|+.++++++.+.+
T Consensus 120 ~~----------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 120 EE----------EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred hh----------HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 32 11110 11122223334899999999999999999998753
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=2.7e-13 Score=109.81 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=75.6
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
....+.+.||||||+++|.......++++|++++|+|+++.+++.... ..+.... ......|+++++||+|+.....
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~- 158 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDE- 158 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccH-
Confidence 334478999999999988765556788999999999999885432110 1111122 2223457999999999964211
Q ss_pred ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHHH
Q 030337 111 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f 152 (179)
........+...+++..+. .+++++||++|.|+.+.+
T Consensus 159 -----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 159 -----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 0001223455667776653 479999999999998744
No 191
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.44 E-value=6.7e-14 Score=113.15 Aligned_cols=152 Identities=24% Similarity=0.302 Sum_probs=115.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
||+-..+++.|.++ .|...+.+.....+.-+.+...|.||+..+.-+......++.||++.++|+.+++++.+.+...|
T Consensus 24 SLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~W 102 (625)
T KOG1707|consen 24 SLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKW 102 (625)
T ss_pred HHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhh
Confidence 57778888999777 44444444433333334466899999877665555567899999999999999999999999999
Q ss_pred HHHHhhcC---CCCcEEEEEeCCCcccccccccCCCCCccccHHH-HHHHHHHh-CCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
++.+++.. .++||||||||.|...... -+.+. ..-+..++ .+...++|||++..++.++|....+
T Consensus 103 LPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 103 LPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred hhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhh
Confidence 99999988 5899999999999986553 22222 33333332 3345789999999999999999999
Q ss_pred HHhCCchh
Q 030337 158 VVLQPPKQ 165 (179)
Q Consensus 158 ~i~~~~~~ 165 (179)
.++.+..+
T Consensus 173 aVihPt~P 180 (625)
T KOG1707|consen 173 AVIHPTSP 180 (625)
T ss_pred eeeccCcc
Confidence 99887655
No 192
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.9e-12 Score=91.02 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=88.1
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+.++|||||+||..+|+.+++++.++|+++|.+.+..+.. ...+..+.... .+|++|..||.|+.+.
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a--~~ii~f~~~~~-~ip~vVa~NK~DL~~a-------- 136 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA--EEIIDFLTSRN-PIPVVVAINKQDLFDA-------- 136 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHH--HHHHHHHhhcc-CCCEEEEeeccccCCC--------
Confidence 578999999999999999999999999999999999999943 45555555442 2999999999999874
Q ss_pred CCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.+.++..++.+.- +. +.++++|.++.+..+.++.+...
T Consensus 137 ----~ppe~i~e~l~~~~~~~-~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 137 ----LPPEKIREALKLELLSV-PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----CCHHHHHHHHHhccCCC-ceeeeecccchhHHHHHHHHHhh
Confidence 3455666655544 55 89999999999999999888776
No 193
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=3.9e-13 Score=96.55 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=83.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeE-EEECCeEEEEEEEeCCCCc----------cccccCccccc---CccEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQE----------DYNRLRPLSYR---GADVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~-~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~---~~~~~i~v~d 68 (179)
+|+.++..+.|...+.++.|...... ...++ .+.+|||||.. .+..+...+++ .++++++|+|
T Consensus 33 tlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd 109 (179)
T TIGR03598 33 SLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMD 109 (179)
T ss_pred HHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEec
Confidence 46777887777666667766433211 22233 58999999953 22223334454 4679999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCCCc
Q 030337 69 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQQN 147 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 147 (179)
++++.+..+. .++..+... +.|+++|+||+|+..... .....++.+..++..+. ..++++||++|.|
T Consensus 110 ~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 110 IRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKALKKDADDPSVQLFSSLKKTG 177 (179)
T ss_pred CCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 9987666554 334444433 689999999999964321 11233444455555432 2799999999999
Q ss_pred HH
Q 030337 148 VK 149 (179)
Q Consensus 148 i~ 149 (179)
++
T Consensus 178 i~ 179 (179)
T TIGR03598 178 ID 179 (179)
T ss_pred CC
Confidence 73
No 194
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=3.4e-12 Score=104.00 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=76.4
Q ss_pred EEEEEEeCCCCccc----ccc---CcccccCccEEEEEEeCCCh----hhHHHHHHHHHHHHhhcC------------CC
Q 030337 36 VNLGLWDTAGQEDY----NRL---RPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PG 92 (179)
Q Consensus 36 ~~~~i~D~~G~~~~----~~~---~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~------------~~ 92 (179)
..+.+|||||.... ..+ ...++++++++|+|+|+++. +.++++ ..|...+..+. .+
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcC
Confidence 67999999995321 111 12246789999999999863 344444 44444443332 36
Q ss_pred CcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 93 VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 93 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.|++||+||+|+.+... . .+.........++ +++++||+++.|+++++++|.+.+..
T Consensus 285 kP~IVVlNKiDL~da~e----------l-~e~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 285 RPRLVVLNKIDVPDARE----------L-AEFVRPELEARGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CCEEEEEECccchhhHH----------H-HHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 89999999999964321 1 1222233344565 89999999999999999999987754
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=3.1e-12 Score=103.88 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=88.4
Q ss_pred eehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCcccccc-----------CcccccCccEEEEEEeCC
Q 030337 4 IYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RPLSYRGADVFILAFSLI 70 (179)
Q Consensus 4 l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~~~i~v~d~~ 70 (179)
|+.+++... ......+|..+.....+..++ ..+.+|||||..+.... ...+++.+|++|+|+|++
T Consensus 189 lin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~ 266 (435)
T PRK00093 189 LINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266 (435)
T ss_pred HHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCC
Confidence 445555432 223333344444444455566 45789999996443221 123578999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 71 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 71 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
++.+.++. .+...+... ..|+++|+||+|+..... .....+.........+..+++++||++|.|+++
T Consensus 267 ~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--------~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 267 EGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT--------MEEFKKELRRRLPFLDYAPIVFISALTGQGVDK 334 (435)
T ss_pred CCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH--------HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHH
Confidence 99888775 344444443 689999999999963221 000111111111222334899999999999999
Q ss_pred HHHHHHHHH
Q 030337 151 VFDAAIKVV 159 (179)
Q Consensus 151 ~f~~l~~~i 159 (179)
+|+.+.+..
T Consensus 335 l~~~i~~~~ 343 (435)
T PRK00093 335 LLEAIDEAY 343 (435)
T ss_pred HHHHHHHHH
Confidence 999987754
No 196
>PRK10218 GTP-binding protein; Provisional
Probab=99.41 E-value=2.2e-12 Score=107.88 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=89.0
Q ss_pred ceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEE
Q 030337 20 TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 98 (179)
Q Consensus 20 t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 98 (179)
+.|..+. +...+..+.+.+++|||||+.+|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++|++++
T Consensus 51 erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l-~~a~~~--gip~IVv 126 (607)
T PRK10218 51 ERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR-FVT-KKAFAY--GLKPIVV 126 (607)
T ss_pred cCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHH-HHH-HHHHHc--CCCEEEE
Confidence 3443332 4455555668999999999999999999999999999999999986544432 233 333333 6899999
Q ss_pred EeCCCcccccccccCCCCCccccHHHHHHHHHH-------hCCCeEEEeccCCCC----------cHHHHHHHHHHHHhC
Q 030337 99 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQ 161 (179)
Q Consensus 99 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~~----------~i~~~f~~l~~~i~~ 161 (179)
.||+|+..... ....++...+... ..+ +++.+||++|. ++..+|+.+++.+-.
T Consensus 127 iNKiD~~~a~~---------~~vl~ei~~l~~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 127 INKVDRPGARP---------DWVVDQVFDLFVNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred EECcCCCCCch---------hHHHHHHHHHHhccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 99999965331 1112333333322 223 68999999998 588888888887754
Q ss_pred C
Q 030337 162 P 162 (179)
Q Consensus 162 ~ 162 (179)
+
T Consensus 197 P 197 (607)
T PRK10218 197 P 197 (607)
T ss_pred C
Confidence 3
No 197
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.41 E-value=1.7e-12 Score=94.02 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=82.2
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccccc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 112 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 112 (179)
.....+.++||||+..|.......++.+|++|+|+|+.+....+.. ..+..+... ++|+++|.||+|+....-
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~--- 139 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKEL--- 139 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHH---
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhH---
Confidence 3447899999999999888777779999999999999977655443 333444444 688999999999973221
Q ss_pred CCCCCccccHHHHH-HHHHHhCC-----CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 113 DHPGAVPITTAQGE-ELRKLIGS-----PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
....++.. .+.+..+. .+++.+||++|.|++++++.+.+.+
T Consensus 140 ------~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 140 ------EEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp ------HHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 01112222 44444432 3699999999999999999998764
No 198
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.40 E-value=1.9e-12 Score=100.96 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=101.6
Q ss_pred hCCCCCcccCceeeceeeEEE--------ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---------
Q 030337 10 YSLGKQDYVPTVFDNFSANVV--------VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK--------- 72 (179)
Q Consensus 10 ~~~f~~~~~pt~~~~~~~~~~--------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~--------- 72 (179)
...+.++|.||..|.+..++. +....+.+.+||+||+...+..|..++.+++++|+|+|+++.
T Consensus 127 ~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~ 206 (317)
T cd00066 127 DRISDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES 206 (317)
T ss_pred HHHhCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc
Confidence 446678899998765543322 122347899999999999999999999999999999999974
Q ss_pred -hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccc-----cCCCCCc-cccHHHHHHHHHH-----h----CCC
Q 030337 73 -ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF-----IDHPGAV-PITTAQGEELRKL-----I----GSP 135 (179)
Q Consensus 73 -~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~-----~----~~~ 135 (179)
..+++....|-..+.... .++|++|++||.|+..+.-.. ......- +-+.+.+..+... . ...
T Consensus 207 ~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~ 286 (317)
T cd00066 207 TNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEI 286 (317)
T ss_pred chHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeE
Confidence 455555344443343333 589999999999986533211 1001110 1233444443322 1 112
Q ss_pred eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 136 AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 136 ~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
....++|.+..++..+|+.+.+.|+..
T Consensus 287 ~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 287 YPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred EEEeccccchHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999887753
No 199
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.39 E-value=2.7e-12 Score=107.71 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=90.8
Q ss_pred eehhhh---hCCCCCcc--cCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---hhH
Q 030337 4 IYIICN---YSLGKQDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK---ASY 75 (179)
Q Consensus 4 l~~~~~---~~~f~~~~--~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~ 75 (179)
|+.++. .+++.++. ..|+...|......++ ..+.+|||||+++|.......+.++|++++|+|+++. .+.
T Consensus 16 Li~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ 93 (614)
T PRK10512 16 LLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTR 93 (614)
T ss_pred HHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHH
Confidence 455555 25565443 5565443332222234 3489999999999877666778999999999999974 344
Q ss_pred HHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHHHHH
Q 030337 76 ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f 152 (179)
+.+ ..+... ++| +++|+||+|+.++.. .....++...+.+..+. .+++++||++|.|+++++
T Consensus 94 ehl-----~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 94 EHL-----AILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred HHH-----HHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHH
Confidence 443 222222 345 679999999965321 00112344455554442 479999999999999999
Q ss_pred HHHHHHHh
Q 030337 153 DAAIKVVL 160 (179)
Q Consensus 153 ~~l~~~i~ 160 (179)
+.|.....
T Consensus 159 ~~L~~~~~ 166 (614)
T PRK10512 159 EHLLQLPE 166 (614)
T ss_pred HHHHHhhc
Confidence 99987543
No 200
>PRK00089 era GTPase Era; Reviewed
Probab=99.39 E-value=3.4e-12 Score=98.53 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCcccc--------ccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 36 VNLGLWDTAGQEDYN--------RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
..+.+|||||..... ......+.++|++++|+|++++.+-.. ..+...+.. .+.|+++|+||+|+...
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKD 128 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCC
Confidence 789999999975422 122335789999999999998432221 233444442 26899999999999632
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.. ........+.+..+...++.+||+++.|++++++++.+.+..
T Consensus 129 ~~----------~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 129 KE----------ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HH----------HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 21 233455556665665689999999999999999999998754
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=2.2e-11 Score=91.13 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=75.0
Q ss_pred EEEECCeEEEEEEEeCCCCccccc-------cCcccccCccEEEEEEeCCChh-hHHHHHHHHHH---------------
Q 030337 28 NVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGADVFILAFSLISKA-SYENVAKKWIP--------------- 84 (179)
Q Consensus 28 ~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~--------------- 84 (179)
.+.+++ ..+++|||||...... ....++++++++++|+|++++. ..+.+ ...++
T Consensus 41 ~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~ 117 (233)
T cd01896 41 VLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITI 117 (233)
T ss_pred EEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEE
Confidence 344555 6799999999754331 1234789999999999999876 33322 12211
Q ss_pred --------------------------HHhhc-------------------------CCCCcEEEEEeCCCcccccccccC
Q 030337 85 --------------------------ELRHY-------------------------APGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 85 --------------------------~i~~~-------------------------~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.++++ ....|+++|+||+|+.
T Consensus 118 ~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-------- 189 (233)
T cd01896 118 KKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-------- 189 (233)
T ss_pred EEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC--------
Confidence 00011 1136999999999984
Q ss_pred CCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 114 HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.+++..++.. ..++++||++|.|++++|+.+.+.+
T Consensus 190 -------~~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 190 -------SIEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred -------CHHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 33444455443 3689999999999999999998865
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.37 E-value=2.6e-12 Score=107.40 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=85.1
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
+..+.++++||||||+.+|...+..+++.+|++++|+|+++...-+ . ..|+..+... ++|+++|+||+|+...+.
T Consensus 59 v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~~--~ip~IVviNKiD~~~a~~- 133 (594)
T TIGR01394 59 IRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALEL--GLKPIVVINKIDRPSARP- 133 (594)
T ss_pred EEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHHC--CCCEEEEEECCCCCCcCH-
Confidence 3334588999999999999988888999999999999998754322 2 3444455444 689999999999965321
Q ss_pred ccCCCCCccccHHHHHHHHHH-------hCCCeEEEeccCCCC----------cHHHHHHHHHHHHhCC
Q 030337 111 FIDHPGAVPITTAQGEELRKL-------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQP 162 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~~----------~i~~~f~~l~~~i~~~ 162 (179)
....++...+... ..+ +++.+||++|. |+..+|+.+++.+-.+
T Consensus 134 --------~~v~~ei~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 134 --------DEVVDEVFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred --------HHHHHHHHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 0112333343322 234 68999999996 7999999999877544
No 203
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.5e-11 Score=97.97 Aligned_cols=117 Identities=27% Similarity=0.297 Sum_probs=90.1
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
++..+.+++.|||||-+|......-+.-|+|+++|+|+.....-+-+ ..++..+.. +..+|.|.||+|++..+.
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp-- 194 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP-- 194 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH--
Confidence 46779999999999999999988899999999999999998877776 444445543 688999999999987431
Q ss_pred cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..-..+..++...... +.+.+||++|.|++++++.+++.+--+
T Consensus 195 -------e~V~~q~~~lF~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 195 -------ERVENQLFELFDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred -------HHHHHHHHHHhcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 0111222333333333 688999999999999999999987543
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.31 E-value=7.7e-12 Score=101.32 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
....+.+.+|||||+++|.......++.+|++++|+|++++.++......+...+... ...|+++++||+|+.....
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~-- 156 (425)
T PRK12317 80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE-- 156 (425)
T ss_pred ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH--
Confidence 3345789999999999886654556789999999999997322211101222222222 2346999999999964210
Q ss_pred cCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHHH
Q 030337 112 IDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f 152 (179)
.......++...+++..+. .+++.+||++|.|+.+.+
T Consensus 157 ----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 157 ----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0001123455556665553 369999999999998744
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.30 E-value=8.4e-12 Score=100.47 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=78.2
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
...+.+|||||+++|...+......+|++++|+|+++.. +.+.+ ..+... .-.|+++++||+|+.+...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~~~- 151 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSKEK- 151 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCHHH-
Confidence 467999999999999887777788899999999999643 33333 222222 2357999999999965321
Q ss_pred ccCCCCCccccHHHHHHHHHHh---CCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 111 FIDHPGAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.....++...+.+.. +. +++++||++|.|+++++++|...+-
T Consensus 152 -------~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 -------ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred -------HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 001123333444332 34 7999999999999999999998664
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.29 E-value=1.4e-11 Score=99.34 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=75.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
..+.+|||||++.|..........+|++++|+|++++. +.+.+ ..+... ...|+++|+||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-----~~l~~~-~i~~iiVVlNK~Dl~~~~~-- 156 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-----MALDII-GIKNIVIVQNKIDLVSKER-- 156 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEEeeccccchh--
Confidence 68999999999988664444556789999999999653 33332 122222 2347999999999965321
Q ss_pred cCCCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 112 IDHPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.....++...+++.. ...+++++||++|.|++++++.|...+..
T Consensus 157 ------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ------ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ------HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001123334444332 12379999999999999999999887643
No 207
>PRK00098 GTPase RsgA; Reviewed
Probab=99.29 E-value=5e-11 Score=92.26 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=84.5
Q ss_pred hhCCCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcc-------cccCccEEEEEEeCCChhhHHHHHH
Q 030337 9 NYSLGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------SYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 9 ~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
..|.|. ....|.+||.+.....-++..+...+.+ +...+++. ...++|++++|+|+++|.++.....
T Consensus 27 ~~g~~~~~~~~~~vGD~V~~~~~~~~~g~i~~i~~-----R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~id 101 (298)
T PRK00098 27 ARGKFRKKTNTPAVGDRVEFSAENNDEGVILEIHE-----RKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLLD 101 (298)
T ss_pred eccccccCCCCcCCCCEEEEEECCCCcEEEEEEeC-----CCceEECCCCccccceeecCCEEEEEEECCCCCCCHHHHH
Confidence 344443 2344677776654432223333333443 22223333 3589999999999999876665557
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.|+..+... ++|+++|+||+|+.++. ..........+..+. +++.+||+++.|++++++.+..
T Consensus 102 r~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 102 RFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-DVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred HHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-eEEEEeCCCCccHHHHHhhccC
Confidence 887776543 78999999999995322 122233444556676 8999999999999999987754
No 208
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.29 E-value=5.8e-11 Score=93.43 Aligned_cols=149 Identities=20% Similarity=0.215 Sum_probs=96.4
Q ss_pred CCCCcccCceeece----------eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---------
Q 030337 12 LGKQDYVPTVFDNF----------SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK--------- 72 (179)
Q Consensus 12 ~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~--------- 72 (179)
.+.++|.||..|.+ ...+.+++ +.+.+||+||+...+..|..++.+++++|||+|+++.
T Consensus 152 i~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~ 229 (342)
T smart00275 152 IGDPDYVPTEQDILRSRVPTTGIQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES 229 (342)
T ss_pred HhCCCCCCCHHHhhheeCCccceEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCc
Confidence 45577777754322 12333444 7789999999999999999999999999999999973
Q ss_pred -hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccc-c----CCCCCccccHHHHHHHHHH-----hC-----CC
Q 030337 73 -ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF-I----DHPGAVPITTAQGEELRKL-----IG-----SP 135 (179)
Q Consensus 73 -~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~-----~~-----~~ 135 (179)
..+++....|-..+.... .++|++|++||.|+..+.-.. + .....-..+.+.+..+... .. ..
T Consensus 230 ~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~ 309 (342)
T smart00275 230 TNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSI 309 (342)
T ss_pred chHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceE
Confidence 355555333333333322 589999999999996532111 0 0000000233334333222 11 12
Q ss_pred eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 136 AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 136 ~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..+.+||.+..++..+|+.+.+.+++.
T Consensus 310 y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 310 YHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred EEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 346788999999999999988887754
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=2.7e-11 Score=85.14 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=87.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCcc----------ccccCccccc---CccEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSYR---GADVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---~~~~~i~v~d 68 (179)
+|+.++.++.+.+...++.+.... ..+..++ .+.+|||+|... +......++. +++++++++|
T Consensus 14 tL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 90 (170)
T cd01876 14 SLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLID 90 (170)
T ss_pred HHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEE
Confidence 467777777887777777764333 2222333 799999999432 3333334443 4678999999
Q ss_pred CCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCC
Q 030337 69 LISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQ 146 (179)
Q Consensus 69 ~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Sa~~~~ 146 (179)
.+++.+.... ...|+.. . ..|+++|+||+|+..... ............+ .....+++++||+++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~---~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 91 SRHGPTEIDLEMLDWLEE---L--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred cCcCCCHhHHHHHHHHHH---c--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 9876433221 1334332 2 589999999999953221 0111122222232 2333478999999999
Q ss_pred cHHHHHHHHHHH
Q 030337 147 NVKAVFDAAIKV 158 (179)
Q Consensus 147 ~i~~~f~~l~~~ 158 (179)
++.++++++.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.27 E-value=3.2e-11 Score=100.89 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=74.2
Q ss_pred EEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
+.+|||||++.|..++...++.+|++++|+|+++ +.+++.+ . .+.. .++|+++++||+|+........+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCc
Confidence 6899999999999888888899999999999998 6666655 2 2222 268999999999985322100000
Q ss_pred CCCccc--cHH-----------HHHHHHHHh--------------CCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 115 PGAVPI--TTA-----------QGEELRKLI--------------GSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 115 ~~~~~~--~~~-----------~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+..... ... +........ +..+++.+||++|.|+.++++.+..
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000000 000 000111111 2246899999999999999988764
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.26 E-value=2.9e-11 Score=89.23 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=56.8
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+++.+.+.+|||||++.|...+..++..+|++++|+|+++..++.. ..|+...... +.|+++|+||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence 3567899999999999998777888999999999999998776654 2444444332 58999999999985
No 212
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.25 E-value=1.3e-10 Score=99.81 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=92.2
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCc----------cc--ccCccEEEEEEeCC
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRP----------LS--YRGADVFILAFSLI 70 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~~--~~~~~~~i~v~d~~ 70 (179)
|+.++..... ...+..|..+. ++..+.....++++|||||..++..... .+ ...+|++++|+|.+
T Consensus 19 LfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat 96 (772)
T PRK09554 19 LFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDAS 96 (772)
T ss_pred HHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence 4455554433 12222343332 3333444557899999999987654221 23 24799999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 71 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 71 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
+.+... .|..++.+. +.|+++++||+|+.+... + ....+.+.+.+++ +++++||++|.|+++
T Consensus 97 ~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~-pVvpiSA~~g~GIde 158 (772)
T PRK09554 97 NLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC-PVIPLVSTRGRGIEA 158 (772)
T ss_pred cchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC-CEEEEEeecCCCHHH
Confidence 865432 344444444 699999999999865332 3 3456778888998 899999999999999
Q ss_pred HHHHHHHHH
Q 030337 151 VFDAAIKVV 159 (179)
Q Consensus 151 ~f~~l~~~i 159 (179)
+.+.+....
T Consensus 159 L~~~I~~~~ 167 (772)
T PRK09554 159 LKLAIDRHQ 167 (772)
T ss_pred HHHHHHHhh
Confidence 999887754
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.25 E-value=2.3e-11 Score=90.25 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=67.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
...+.+|||||+..|...+...++.+|++|+|+|+++.. ..+.. ..| ..... ....|+++++||+|+...
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLART-LGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHH-cCCCeEEEEEEccccccc
Confidence 378999999999877766666778899999999999852 11221 222 22222 234689999999999731
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHH
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK 149 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~ 149 (179)
.. .........++...+.+..+. .+++.+||++|.|++
T Consensus 153 ~~----~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 153 NW----SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 10 000000111233334455443 369999999999987
No 214
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.24 E-value=7.4e-11 Score=94.25 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=81.8
Q ss_pred EEEEEEeCCCCccccc----c---CcccccCccEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYNR----L---RPLSYRGADVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKL 102 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~----~---~~~~~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~ 102 (179)
..+.++||||...-.+ + ....++.++++++|+|++ +...++++ ..|...+..+. .+.|+++|+||+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 3588999999743211 1 112478899999999998 45567766 67777777654 368999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+.... ...+....+.+..+. ..++.+||+++.|++++++.+.+.+..
T Consensus 286 Dl~~~~-----------el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 286 DLLDEE-----------EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ccCChH-----------HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 996432 122334445555443 268999999999999999999998754
No 215
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=1.5e-10 Score=92.23 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=90.9
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
+|+.+.+++.|||||-+|......-+.-|.|+++|+|++..-.-+.+ ...+-.+.. +..++-|.||+|++..+
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad--- 144 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD--- 144 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC---
Confidence 56889999999999999988888888999999999999998777766 334444443 68889999999998733
Q ss_pred cCCCCCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 112 IDHPGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
...-..+.....|+ ...+.+|||+|.||+++++.+++.+--+.
T Consensus 145 ---------pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 145 ---------PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred ---------HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 22333445555565 34688999999999999999999875443
No 216
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2e-11 Score=84.41 Aligned_cols=140 Identities=15% Similarity=0.216 Sum_probs=97.4
Q ss_pred eehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 83 (179)
|++...+++- ..+.||.-. .+..+.++| ++++.+|.+|+..-+..|..|+..++++++.+|+.|.+.|++.+.++-
T Consensus 36 LLHMLKdDrl-~qhvPTlHP-TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld 111 (193)
T KOG0077|consen 36 LLHMLKDDRL-GQHVPTLHP-TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELD 111 (193)
T ss_pred HHHHHccccc-cccCCCcCC-ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHH
Confidence 3455555544 344566421 144566788 899999999999989999999999999999999999999998855553
Q ss_pred HHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHH---HHHH---hC--------C--CeEEEeccCCCC
Q 030337 84 PELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE---LRKL---IG--------S--PAYIECSSKTQQ 146 (179)
Q Consensus 84 ~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~--------~--~~~~e~Sa~~~~ 146 (179)
..+.... .++|++++|||+|.+... +.++.+. +.+. .+ . ...+.||+..+.
T Consensus 112 ~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~ 179 (193)
T KOG0077|consen 112 ALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKM 179 (193)
T ss_pred HHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccC
Confidence 3333332 589999999999997632 3222221 1111 11 1 235668888888
Q ss_pred cHHHHHHHHHHHH
Q 030337 147 NVKAVFDAAIKVV 159 (179)
Q Consensus 147 ~i~~~f~~l~~~i 159 (179)
+.-+.|.|+...+
T Consensus 180 gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 180 GYGEGFKWLSQYI 192 (193)
T ss_pred ccceeeeehhhhc
Confidence 8888888876643
No 217
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.21 E-value=1.3e-10 Score=101.77 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=74.7
Q ss_pred EEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
+.+|||||++.|..+....+..+|++++|+|+++ +.+++.+ ..+... ++|+++|+||+|+.+........
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I-----~~lk~~--~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI-----NILRQY--KTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH-----HHHHHc--CCCEEEEEECCCCccccccccch
Confidence 8999999999998887778899999999999997 4555544 223332 68999999999996533211000
Q ss_pred CCCcccc------HHHHH----HH---HHH--------------hCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 115 PGAVPIT------TAQGE----EL---RKL--------------IGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 115 ~~~~~~~------~~~~~----~~---~~~--------------~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+....+. ..+.. .+ ... .+..+++.+||++|.||+++...+...
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0000000 00000 00 111 133478999999999999999877643
No 218
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.20 E-value=3.7e-11 Score=88.42 Aligned_cols=106 Identities=20% Similarity=0.137 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+.+|||||+++|...+...++.+|++++|+|++++..-+.. .....+... ...++++|+||+|+.....
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------ 147 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------ 147 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------
Confidence 5788999999988766556678999999999999976433222 111222222 2346888999999964211
Q ss_pred CCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHHH
Q 030337 116 GAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA 150 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 150 (179)
........+...+.+.++. .+++.+||++|.|+.+
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 0000112344555666664 2489999999999875
No 219
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.17 E-value=6.1e-10 Score=85.79 Aligned_cols=132 Identities=16% Similarity=0.111 Sum_probs=85.7
Q ss_pred hhCCCCC-cccCceeeceeeEEEECCeEEEEEEEeCCCCccccc----cCcccccCccEEEEEEeCCChh-hHHHHHHHH
Q 030337 9 NYSLGKQ-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPLSYRGADVFILAFSLISKA-SYENVAKKW 82 (179)
Q Consensus 9 ~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 82 (179)
..+.|.. ...|.+||.+.....-++..+...|..--.. -.++ .....+.++|++++|+|+.++. ++..+ +.|
T Consensus 24 ~~g~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~-l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s~~~l-dr~ 101 (287)
T cd01854 24 ARGKLRKKGIKPVVGDWVEVEPDDDGEGVIVRVLPRKNL-LSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRLL-DRY 101 (287)
T ss_pred eccccccCCCCccCCCEEEEEecCCCcEEEEEEECCCce-EEccCCCCcceeEEEeCCEEEEEEEcCCCCCCHHHH-HHH
Confidence 3444431 2358888877644322333444455441110 0000 0223489999999999999998 88877 778
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+..+... +.|+++|+||+|+.++. ............+. +++.+||+++.|+++++..+..
T Consensus 102 L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 102 LVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALALGY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred HHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhCCC-eEEEEECCCCccHHHHHhhhcc
Confidence 8776654 78999999999995421 11122333445676 8999999999999999988764
No 220
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-10 Score=92.66 Aligned_cols=145 Identities=25% Similarity=0.338 Sum_probs=115.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|++||++|.|+++..|. |..|.+++.+++....+.+.|.+|... .+|...+|++||||.+.+..+|+.+ ..+
T Consensus 45 alvhr~ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v-~~l 117 (749)
T KOG0705|consen 45 ALVHRYLTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAV-QAL 117 (749)
T ss_pred eeeeeeccceeccccCCc-CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHH-HHH
Confidence 689999999999998887 558888888999999999999999433 3677889999999999999999988 445
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+..+. ..+|+++++++.-..... .+.+....+..++..+....++++++.+|.++..+|+.+..+++
T Consensus 118 ~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 118 AHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred HhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHH
Confidence 44444443 479999999987664422 23455566666666655558999999999999999999988776
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
..
T Consensus 190 ~~ 191 (749)
T KOG0705|consen 190 QL 191 (749)
T ss_pred HH
Confidence 54
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=4.2e-10 Score=83.67 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=72.3
Q ss_pred EEEEEEeCCCCccccccCcccc--cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
..+.+.||||+++|.......+ ..+|++++|+|++....-+.. .++..+... +.|+++|.||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~~---- 155 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPANI---- 155 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHHH----
Confidence 5789999999998865433334 368999999999876544332 444444444 689999999999864321
Q ss_pred CCCCccccHHHHHHHHHH-------------------------hCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 114 HPGAVPITTAQGEELRKL-------------------------IGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
......+...+.+. ....+++.+||.+|.|++++...|..
T Consensus 156 ----~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 ----LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ----HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 00111122222221 11347899999999999999877643
No 222
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=4.2e-11 Score=89.04 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=77.0
Q ss_pred EEEEEEEeCCCCcccccc-----CcccccCccEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRL-----RPLSYRGADVFILAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~-----~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+.++|||.||+..+... ....+++++++|+|+|+.+.+-.+++ ....+..+.+..++..+-++.+|+|+..+
T Consensus 47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 378999999999755432 35578999999999999955433333 14445666677789999999999999653
Q ss_pred cccccCCCCCcccc----HHHHHHHHHHhC---CCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 108 KQFFIDHPGAVPIT----TAQGEELRKLIG---SPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 108 ~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.. +... .+.....+...+ + .++.||.-+ +.+-++|-.+++.++-.
T Consensus 127 ~~--------r~~~~~~~~~~i~~~~~~~~~~~~-~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 127 DE--------REEIFRDIQQRIRDELEDLGIEDI-TFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHTT-TSE-EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred HH--------HHHHHHHHHHHHHHHhhhccccce-EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 32 1111 122233344454 4 678888776 69999999999988743
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.14 E-value=1.5e-10 Score=85.91 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=56.2
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
++.+.+++|||||++.|......+++.+|++++|+|+++..+.+.. ..| ...... ++|+++|+||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l-~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVL-RQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCCcc
Confidence 4578999999999999998888899999999999999988776653 222 233222 58999999999986
No 224
>PRK12289 GTPase RsgA; Reviewed
Probab=99.13 E-value=1.3e-09 Score=85.99 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred cccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH
Q 030337 48 DYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 126 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
+-..+.+..+.++|++++|+|+.++. ++..+ ..|+..+.. .++|++||+||+|+.... ......
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~------------~~~~~~ 142 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPT------------EQQQWQ 142 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChH------------HHHHHH
Confidence 33445566799999999999999876 45455 677665533 379999999999995422 111222
Q ss_pred HHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 127 ELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 127 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
...+.++. .++.+||+++.|++++++.+...
T Consensus 143 ~~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 143 DRLQQWGY-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHhcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence 33346677 79999999999999999888754
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8e-10 Score=89.34 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
-.+.+.|||||+.|..++..-..=+|++|+|++++|.--.|.. +-++..+.. ++|+++..||+|+++.+
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~n------- 123 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEAN------- 123 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCC-------
Confidence 4688999999999999998888899999999999985433322 111222332 79999999999998633
Q ss_pred CCccccHHHHHHHHHHhCC--------CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLIGS--------PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
......-...+|+ ..++.+||++|.|+.+++..++-+.
T Consensus 124 ------p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 124 ------PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred ------HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 2222222222222 4689999999999999999876543
No 226
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.12 E-value=7.1e-10 Score=83.17 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..+.+++.+|||||+.+|...+..+++.+|++++|+|.++....+. ..+...+... +.|+++++||+|+..
T Consensus 60 ~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 60 QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 3344789999999999998888889999999999999998765443 3455555544 689999999999975
No 227
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.11 E-value=1.2e-09 Score=76.46 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=74.5
Q ss_pred eEEEECCeEEEEEEEeCCCCcccccc------Ccccc--cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEE
Q 030337 27 ANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 98 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 98 (179)
-.+.+++ ..+.+.|+||.-.+.+. ...++ .+.|++|.|.|+++.+.-- .+..++.+. +.|++++
T Consensus 40 g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvv 111 (156)
T PF02421_consen 40 GIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVV 111 (156)
T ss_dssp EEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEE
T ss_pred EEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEE
Confidence 3455566 67999999996443322 22233 6899999999999765322 333444444 6999999
Q ss_pred EeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 99 GTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 99 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.||+|...... +.. ....+.+.+|+ +.+.+||+++.|++++++.+
T Consensus 112 lN~~D~a~~~g----------~~i-d~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 112 LNKMDEAERKG----------IEI-DAEKLSERLGV-PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EETHHHHHHTT----------EEE--HHHHHHHHTS--EEEEBTTTTBTHHHHHHHH
T ss_pred EeCHHHHHHcC----------CEE-CHHHHHHHhCC-CEEEEEeCCCcCHHHHHhhC
Confidence 99999976543 332 36778888998 89999999999999998864
No 228
>PRK12288 GTPase RsgA; Reviewed
Probab=99.10 E-value=2.1e-09 Score=84.71 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=66.6
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCe
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 136 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (179)
..|+|.+++|++++...++..+ +.|+..+.. .++|++||+||+|+..... ...........+..+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4679999999999877899888 888765543 3689999999999964221 0111222333445676 8
Q ss_pred EEEeccCCCCcHHHHHHHHHHH
Q 030337 137 YIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 137 ~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
++++||+++.|++++++.+...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999998764
No 229
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=88.84 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=95.2
Q ss_pred eehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCcccc--c-------cCcccccCccEEEEEEeCCCh
Q 030337 4 IYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--R-------LRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 4 l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------~~~~~~~~~~~~i~v~d~~~~ 72 (179)
|+.|.+..+- .+++.-+..|.......+.+.. +.+.||+|-+... . -....+..||+++||+|....
T Consensus 19 LFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G 96 (444)
T COG1160 19 LFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG 96 (444)
T ss_pred HHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 3444444433 3555556667777777788844 9999999977533 1 123357889999999999885
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
-+-.+- ...+.+++. +.|++||.||+|-.. .+....-.-.+|..+.+.+||.+|.|+.++.
T Consensus 97 it~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~---------------~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 97 ITPADE--EIAKILRRS--KKPVILVVNKIDNLK---------------AEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCHHHH--HHHHHHHhc--CCCEEEEEEcccCch---------------hhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 544442 334444432 699999999999742 2233344456677789999999999999999
Q ss_pred HHHHHHH
Q 030337 153 DAAIKVV 159 (179)
Q Consensus 153 ~~l~~~i 159 (179)
+.++..+
T Consensus 158 d~v~~~l 164 (444)
T COG1160 158 DAVLELL 164 (444)
T ss_pred HHHHhhc
Confidence 9999987
No 230
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=7.8e-10 Score=80.18 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=65.5
Q ss_pred ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH
Q 030337 49 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 128 (179)
Q Consensus 49 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (179)
+..++..++++++++++|+|++++..- |...+.....+.|+++|+||+|+.... ........+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 566778899999999999999986521 111221222468999999999996432 223333333
Q ss_pred H-----HHhCC--CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 129 R-----KLIGS--PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 129 ~-----~~~~~--~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
. +..+. ..++.+||++|.|++++++.+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 22232 2589999999999999999998865
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=99.05 E-value=1.4e-09 Score=87.36 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=77.0
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ 109 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~ 109 (179)
+......+.+|||||+++|......-+..+|++++|+|+++...-+.. ..+..+... ++| ++++.||+|+.++..
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~ 145 (394)
T PRK12736 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEE 145 (394)
T ss_pred ecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHH
Confidence 333445788999999998876555566789999999999875333322 222334333 577 778999999964221
Q ss_pred cccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCC--------cHHHHHHHHHHHHh
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQ--------NVKAVFDAAIKVVL 160 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~--------~i~~~f~~l~~~i~ 160 (179)
......++...+.+..+. .+++.+||++|. ++.++++.+.+.+-
T Consensus 146 -------~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 146 -------LLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred -------HHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 000112345555555553 379999999983 56777777766543
No 232
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=1.7e-09 Score=78.76 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQF 110 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~ 110 (179)
..+..++.+.||||+..|.......+..+|++++|+|++....-+.. ..+..+... +.| ++++.||+|+..+..
T Consensus 61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~- 135 (195)
T cd01884 61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEE- 135 (195)
T ss_pred cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHH-
Confidence 33446788999999988766666678899999999999875433332 333344443 466 889999999963221
Q ss_pred ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcH
Q 030337 111 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNV 148 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i 148 (179)
......++...+.+..+. .+++.+||++|.|+
T Consensus 136 ------~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 136 ------LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ------HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 001122345555555543 47999999999885
No 233
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.04 E-value=1.6e-09 Score=87.06 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=68.2
Q ss_pred EECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCccccc
Q 030337 30 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 108 (179)
Q Consensus 30 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~ 108 (179)
.+......+.+|||||+++|..........+|++++|+|+++....+.. ..+..+... .+|. +++.||+|+.+..
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHH
Confidence 3444456789999999998866554556788999999999974333322 222233333 4665 4789999996532
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCC
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQ 146 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~ 146 (179)
. ......++...+++..+. .+++.+||++|.
T Consensus 145 ~-------~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 145 E-------LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred H-------HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 1 000112356666766653 479999999875
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.01 E-value=6.5e-09 Score=82.89 Aligned_cols=129 Identities=21% Similarity=0.238 Sum_probs=90.1
Q ss_pred CceeeceeeEEEECCeEEEEEEEeCCCCcc----------ccccC-cccccCccEEEEEEeCCChhhHHHHHHHHHHHHh
Q 030337 19 PTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR-PLSYRGADVFILAFSLISKASYENVAKKWIPELR 87 (179)
Q Consensus 19 pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~ 87 (179)
-|..+.....+..+++. +.+.||+|..+ |.... ...+..++++++|.|.+.+-+-++. .....+.
T Consensus 211 GTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~ 286 (444)
T COG1160 211 GTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL--RIAGLIE 286 (444)
T ss_pred CccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH--HHHHHHH
Confidence 34456667777777844 67899999533 33221 2357789999999999999988886 5555665
Q ss_pred hcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 88 HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 88 ~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+. ..++++|.||+|+.+.++ .....-.++........+..+.+.+||++|.+++++|+.+....
T Consensus 287 ~~--g~~~vIvvNKWDl~~~~~------~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 287 EA--GRGIVIVVNKWDLVEEDE------ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred Hc--CCCeEEEEEccccCCchh------hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 55 789999999999976432 00001122334444455667889999999999999999887743
No 235
>PRK09866 hypothetical protein; Provisional
Probab=98.99 E-value=5.1e-09 Score=87.09 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=82.9
Q ss_pred cCceeeceeeEEEECCeEEEEEEEeCCCCccc-----cccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q 030337 18 VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 92 (179)
Q Consensus 18 ~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~ 92 (179)
.|-|.+.+.+.--.......+.+.||||...- .......+..+|++++|+|.++..+..+. .+.+.+++...+
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~ 289 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQS 289 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCC
Confidence 45554444432111112347889999997431 11233468999999999999986555543 345555554334
Q ss_pred CcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH------hCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 93 VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL------IGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 93 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.|+++|.||+|+..... ...+....+.+. .....++.+||++|.|++.+.+.+...
T Consensus 290 ~PVILVVNKIDl~dree----------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNS----------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCEEEEEEcccCCCccc----------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 69999999999854221 223444444321 123468999999999999999999884
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.99 E-value=1e-09 Score=75.39 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=74.3
Q ss_pred EEEeCCCCc----cccccCcccccCccEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 39 GLWDTAGQE----DYNRLRPLSYRGADVFILAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 39 ~i~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.+.||||.- +|..-.-....+|+.+++|.|.+++.+ |. ..+...+ +.|+|-|.||+|+..+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f-----~~pvIGVITK~Dl~~~~----- 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMF-----NKPVIGVITKIDLPSDD----- 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhccc-----CCCEEEEEECccCccch-----
Confidence 368999952 222222334568999999999998753 32 1222122 58999999999998433
Q ss_pred CCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 114 HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
...+.++++.+.-|+..++++|+.+|.||+++.++|-
T Consensus 106 ------~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 106 ------ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ------hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 5677889999999998899999999999999998863
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.97 E-value=6.6e-09 Score=86.11 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=55.1
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
+..+.+.+++|||||+++|......+++.+|++|+|+|+++....+. ..++...... ++|+++++||+|+..
T Consensus 74 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 74 FPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred EEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 34445889999999999988877778999999999999987643332 2334444333 799999999999865
No 238
>PRK13351 elongation factor G; Reviewed
Probab=98.96 E-value=8.3e-09 Score=88.38 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=57.0
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+.+++|||||+.+|...+..+++.+|++++|+|.++..+.+.. ..| ..+... ++|+++++||+|+...
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 47899999999999888888899999999999999998777654 444 334333 6899999999999753
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=98.95 E-value=4.9e-09 Score=84.30 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=75.2
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCcccccccc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFF 111 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~ 111 (179)
....++.++||||+++|.......+..+|++++|+|+.+...-+.. ..+..+... ++|.+ ++.||+|+.++..
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-- 145 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-- 145 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHH--
Confidence 3345789999999988866555667899999999999875433322 223333333 57755 6799999964221
Q ss_pred cCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCC----------cHHHHHHHHHHHH
Q 030337 112 IDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKVV 159 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~----------~i~~~f~~l~~~i 159 (179)
.......+...+.+.++. .+++.+||++|. ++..+++.|...+
T Consensus 146 -----~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 146 -----LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred -----HHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 001122345556666543 478999999984 5666666666643
No 240
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=2.5e-09 Score=84.84 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=70.9
Q ss_pred CccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHH
Q 030337 46 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 125 (179)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 125 (179)
.++|..+...+.++++++++|+|+.|.. ..|.+.+.+...+.|+++|+||+|+.+.. ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 4578888888899999999999997755 23444444444468999999999996532 333333
Q ss_pred H----HHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHH
Q 030337 126 E----ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 126 ~----~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
. ++++..++. .++.+||++|.|++++|+.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345666652 58999999999999999998764
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.94 E-value=3.7e-09 Score=86.07 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCC
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE-------NVAKKWIPELRHYAPGV-PIILVGTKLD 103 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~i~~~~~~~-piilv~nK~D 103 (179)
......+.+.|+||+++|.......+..+|++|+|+|+++. .|+ ....+|. .+... .+ ++++++||+|
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~~--gi~~iIV~vNKmD 156 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFTL--GVKQMICCCNKMD 156 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHHc--CCCcEEEEEEccc
Confidence 34457899999999999988888889999999999999873 221 2212222 22222 45 5788999999
Q ss_pred cccccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHH
Q 030337 104 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 150 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 150 (179)
+....- .........+++..+++..|+ .+++++||++|.|+.+
T Consensus 157 ~~~~~~----~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATTPKY----SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCchhh----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 862110 000001124556677777663 3699999999999854
No 242
>COG1159 Era GTPase [General function prediction only]
Probab=98.93 E-value=1.1e-08 Score=77.52 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=80.8
Q ss_pred EEEEEEEeCCCCccc--------cccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDY--------NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~--------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..++.+.||||--.- .......++++|+++||.|++++..-.+ ...++.++. .+.|++++.||+|..+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~ 128 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVK 128 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCC
Confidence 578899999995321 1122345789999999999998654433 244556655 3689999999999876
Q ss_pred ccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 107 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
... .-......+.........+.+||++|.|++.+.+.+...+-+.
T Consensus 129 ~~~----------~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 129 PKT----------VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cHH----------HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 431 1123334444455666889999999999999999999877553
No 243
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.4e-08 Score=82.42 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=78.1
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
-.+.+.||||+..|..|+..-.+-+|++++|+..+|.---+-+ +.|+... .++|+|+..||+|.++.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a------- 268 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGA------- 268 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCC-------
Confidence 4588999999999999998889999999999999986433332 1222222 38999999999998763
Q ss_pred CCCccccHHHHHHHHHHhCC--------CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 115 PGAVPITTAQGEELRKLIGS--------PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.+...+-...+|+ ...+.+||++|.|++.+-+.++-+.
T Consensus 269 ------~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 269 ------NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred ------CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 33333332222222 4689999999999999998876654
No 244
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.92 E-value=7.5e-09 Score=78.95 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=54.7
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
+....+++++|||||+.+|.......++.+|++|+|+|+++....+. ..+....... ++|+++++||+|+..
T Consensus 66 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~ 137 (267)
T cd04169 66 FEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREG 137 (267)
T ss_pred EeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCC
Confidence 44455889999999999888766778899999999999987643332 2333444333 689999999999865
No 245
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=3.5e-09 Score=74.28 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=63.2
Q ss_pred ccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH
Q 030337 51 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (179)
.++....+++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+.+... . .....+.+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~~ 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV----------L--EKWKSIKE 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH----------H--HHHHHHHH
Confidence 3455677889999999999887644332 22222222 2689999999999853211 1 11112333
Q ss_pred HhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 131 LIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 131 ~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
..+. +++.+||+++.|++++++.+.+.+-
T Consensus 68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 68 SEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 4455 7899999999999999999987653
No 246
>PRK13768 GTPase; Provisional
Probab=98.86 E-value=8.9e-09 Score=77.97 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=71.7
Q ss_pred EEEEEeCCCCccc---cccCcccccC-----ccEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 37 NLGLWDTAGQEDY---NRLRPLSYRG-----ADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 37 ~~~i~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+.+||+||+..+ +..+..+++. ++++++|+|+....+..+.. ..|+........+.|+++|.||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999998663 3333333322 88999999997655433331 2333322222247999999999999754
Q ss_pred cccccCCCCCcccc----------------H---HHHHHHHHHhCC-CeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 108 KQFFIDHPGAVPIT----------------T---AQGEELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 108 ~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
..... ...... . ....+..+..+. ..++++|++++.|++++.+++.+.+.
T Consensus 178 ~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELER---ILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHH---HHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32000 000000 0 000011223332 37899999999999999999988663
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.86 E-value=3e-08 Score=77.36 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH-HHHHHHhC
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD-AAIKVVLQ 161 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~-~l~~~i~~ 161 (179)
..|+++|+||.|+.... +....+........++.+||+.+.++.++.+ .+...+-.
T Consensus 214 ~KPvI~VlNK~Dl~~~~--------------~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDAE--------------NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccChH--------------HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 47999999999974321 1112222333344799999999999999998 58887744
No 248
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.86 E-value=3.5e-08 Score=80.61 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=110.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+++..|+.+.|.+++.++....+. ..+...++.-.+.+-|.+-. ....+...- ..||++.++||++++.+|..+ ..
T Consensus 440 ~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~-a~ 516 (625)
T KOG1707|consen 440 ALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYL-AE 516 (625)
T ss_pred HHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHH-HH
Confidence 467889999999888888877775 33444566667888887765 333333334 789999999999999999988 34
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.++..... ...|.++|++|+|+.+..+ ....+..+++..+++...+.+|.++... .++|..|+.....
T Consensus 517 v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 517 VYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred HHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhC
Confidence 33333222 5799999999999976442 3333448999999998889999886444 8999999998888
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
+.
T Consensus 585 Ph 586 (625)
T KOG1707|consen 585 PH 586 (625)
T ss_pred CC
Confidence 77
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.86 E-value=6.2e-09 Score=83.95 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=68.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
..++.+|||||+++|.......+..+|++++|+|+.+...-+.. ..|. .+... ...+++++.||+|+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~-~~~~~-~~~~iivviNK~D~~~~~~----- 150 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSY-IASLL-GIRHVVLAVNKMDLVDYDE----- 150 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHH-HHHHc-CCCcEEEEEEecccccchH-----
Confidence 35789999999998866555678899999999999876433322 2221 22222 2346899999999964221
Q ss_pred CCCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHHH
Q 030337 115 PGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA 150 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 150 (179)
.......++...+.+..+. .+++.+||++|.|+.+
T Consensus 151 -~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 151 -EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 0000011223334444443 3699999999999885
No 250
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=4.4e-09 Score=76.94 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=93.8
Q ss_pred CeeeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccc-----cccCcccccCccEEEEEEeCCChhhH
Q 030337 1 MRFIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASY 75 (179)
Q Consensus 1 ~~~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~ 75 (179)
||+++..-....-.....+||.....+....++ +.+.+||.+||+.+ ..-....+++.+++++|||++..+--
T Consensus 20 mrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~ 97 (295)
T KOG3886|consen 20 MRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREME 97 (295)
T ss_pred cchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhh
Confidence 666666544444445566777666665555566 88999999999842 33445689999999999999988644
Q ss_pred HHHHHHH---HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 76 ENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 76 ~~~~~~~---~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.++ ..+ ++.+.++.|...+.+..+|.|+..... +........+....+....++ .++.+|.- .+.+-+++
T Consensus 98 ~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~----r~~if~~r~~~l~~~s~~~~~-~~f~Tsiw-Detl~KAW 170 (295)
T KOG3886|consen 98 KDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA----RELIFQRRKEDLRRLSRPLEC-KCFPTSIW-DETLYKAW 170 (295)
T ss_pred hhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch----HHHHHHHHHHHHHHhcccccc-cccccchh-hHHHHHHH
Confidence 444 333 345556667888999999999976431 000001112222333333444 56666644 34555555
Q ss_pred HHHHHHHhCC
Q 030337 153 DAAIKVVLQP 162 (179)
Q Consensus 153 ~~l~~~i~~~ 162 (179)
-.++..++..
T Consensus 171 S~iv~~lipn 180 (295)
T KOG3886|consen 171 SSIVYNLIPN 180 (295)
T ss_pred HHHHHhhCCC
Confidence 5555555443
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.85 E-value=2.9e-08 Score=79.49 Aligned_cols=125 Identities=24% Similarity=0.273 Sum_probs=87.3
Q ss_pred CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC--------cccccCccEEEEEEeCCChhhHHHHHHHHHHHH
Q 030337 15 QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYENVAKKWIPEL 86 (179)
Q Consensus 15 ~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i 86 (179)
.+..-|..|.....+.++| +.+.|.||+|........ ...++.||.+++|+|.+.+.+-.+. ..+.
T Consensus 246 TdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--~~~~-- 319 (454)
T COG0486 246 TDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--ALIE-- 319 (454)
T ss_pred cCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--HHHH--
Confidence 3445566677788888999 889999999975443322 2347899999999999997444433 2222
Q ss_pred hhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 87 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 87 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
....+.|+++|.||.|+..... .... +..+-.+.+.+|+++|.|++.+.+.+.+.+...
T Consensus 320 -~~~~~~~~i~v~NK~DL~~~~~---------------~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 320 -LLPKKKPIIVVLNKADLVSKIE---------------LESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -hcccCCCEEEEEechhcccccc---------------cchh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 2224799999999999976431 1111 222222689999999999999999988866543
No 252
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=6.3e-08 Score=74.01 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=78.2
Q ss_pred EEEEEeCCCCccccc----cCccc---ccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCC
Q 030337 37 NLGLWDTAGQEDYNR----LRPLS---YRGADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLD 103 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~----~~~~~---~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D 103 (179)
.+.+=|.||.-.-.. +-..| ++.+..++||+|++.+ +.++.+ ..+..++..+. .+.|.++|+||+|
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccC
Confidence 388999999654333 22333 5678999999999998 777777 44444554433 5899999999999
Q ss_pred cccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 104 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+++. ......++++.+.-..++.+||++++++.++...+-.
T Consensus 324 ~~ea-------------e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 324 LPEA-------------EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred chhH-------------HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 9532 2223467777777656899999999999999887654
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.83 E-value=2.2e-08 Score=81.59 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=75.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
..+.+.|+||++.|......-+..+|++++|+|+++. ...+.. +++ ..+... .-.|+++|.||+|+.+...
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~----- 188 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKEAQ----- 188 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCHHH-----
Confidence 3688999999999877666677899999999999974 222222 222 222222 2346899999999964221
Q ss_pred CCCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 115 PGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.....++...+.+.. ...+++.+||++|.|++.+++.|...+-
T Consensus 189 ---~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 ---AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred ---HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 001122333333221 2247999999999999999999987554
No 254
>PRK12740 elongation factor G; Reviewed
Probab=98.83 E-value=4.2e-08 Score=83.91 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=56.3
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
+.+++ +.+.+|||||+..|...+...++.+|++++|+|.++..+.+.. ..| ..+... +.|+++|+||+|+..
T Consensus 55 ~~~~~--~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 55 CEWKG--HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred EEECC--EEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 33444 7899999999988877777889999999999999987766654 333 333333 689999999999874
No 255
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.81 E-value=1.8e-08 Score=76.96 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=52.7
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.++.+|||||+..|...+...++.+|++++|+|..+...-+.. .+...+... +.|++++.||+|+..
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 7889999999998888888899999999999999876433322 333344433 689999999999964
No 256
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.78 E-value=1.7e-08 Score=82.83 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=66.7
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
...++.+|||||++.|......-++.+|++++|+|+++...-+.. ..+. .+... ...|++++.||+|+.....
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~~-l~~~l-g~~~iIvvvNKiD~~~~~~---- 177 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHSF-IATLL-GIKHLVVAVNKMDLVDYSE---- 177 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHHH-HHHHh-CCCceEEEEEeeccccchh----
Confidence 346788999999998865444557999999999999875422211 1211 11111 1247899999999964221
Q ss_pred CCCCccccHHHHHHHHHHhC---CCeEEEeccCCCCcHHHH
Q 030337 114 HPGAVPITTAQGEELRKLIG---SPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~ 151 (179)
........+...+.+..+ ..+++.+||++|.|+.+.
T Consensus 178 --~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 --EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000001112223333333 247999999999999764
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=74.41 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCcccCceeeceeeEEEECCeEEEEEEEeCCCC---------ccccccCcccccCccEEEEEEeCCChhhHHHHHHHHH
Q 030337 13 GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWI 83 (179)
Q Consensus 13 f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 83 (179)
+.++...+.-+-....+.+++ .-.+.+-||-|= +.|++.. .....+|.++.|+|+++|...+.+ ..-.
T Consensus 218 ~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~-~~v~ 294 (411)
T COG2262 218 YVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-EEVKEADLLLHVVDASDPEILEKL-EAVE 294 (411)
T ss_pred eccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHH-HHHH
Confidence 334444444444455666653 245778899992 1233221 235789999999999999777666 5555
Q ss_pred HHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 84 PELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 84 ~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..+.+.. .+.|+++|.||+|+..+. .......... +..+.+||++|.|++.+.+.|...+...
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 5666554 579999999999985422 1122222222 2588999999999999999999877643
No 258
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.74 E-value=5.3e-08 Score=76.09 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=96.3
Q ss_pred CCCCCcccCceeecee----------eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhH-----
Q 030337 11 SLGKQDYVPTVFDNFS----------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY----- 75 (179)
Q Consensus 11 ~~f~~~~~pt~~~~~~----------~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----- 75 (179)
....++|.||..|... ..+.+.+ +.+.++|+|||..-+.-|...+.+++++|||.++++-+..
T Consensus 162 rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~ 239 (354)
T KOG0082|consen 162 RISSPDYVPTEQDILRSRVPTTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDE 239 (354)
T ss_pred HhcCCCCCCCHHHHHhhccCcCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhccccc
Confidence 3567888888654332 2233344 7899999999998899999999999999999999965322
Q ss_pred --HHHHHHHHHHHhhcC-----CCCcEEEEEeCCCcccccccc-----cCCCCCccccHHHHHHHHHH--------h--C
Q 030337 76 --ENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGEELRKL--------I--G 133 (179)
Q Consensus 76 --~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--------~--~ 133 (179)
+.+ .+-+..+...+ .+++++|..||.|+..+.-.. ......-.-..+.+..+... . .
T Consensus 240 ~~NRM-~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~ 318 (354)
T KOG0082|consen 240 TTNRM-HESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKK 318 (354)
T ss_pred chhHH-HHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCc
Confidence 112 22233333322 489999999999997653221 01111111122333322211 1 2
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHHhCCch
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVVLQPPK 164 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~~ 164 (179)
+ -...++|.+..+|+.+|..+.+.+++...
T Consensus 319 i-y~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 319 I-YVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred c-eEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 2 34567999999999999999998876543
No 259
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.72 E-value=1e-07 Score=73.09 Aligned_cols=126 Identities=14% Similarity=0.012 Sum_probs=75.0
Q ss_pred eeehhhhhCCCCCc----------ccCceee-ceeeEEEECCeEEEEEEEeCCCCcc-----------------------
Q 030337 3 FIYIICNYSLGKQD----------YVPTVFD-NFSANVVVDGSTVNLGLWDTAGQED----------------------- 48 (179)
Q Consensus 3 ~l~~~~~~~~f~~~----------~~pt~~~-~~~~~~~~~~~~~~~~i~D~~G~~~----------------------- 48 (179)
+|+.++.++.+... ..+|++. .+...+..+|..+.+.||||||-..
T Consensus 19 TliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 19 TFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred HHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 35566666666433 4556543 3345566678889999999999322
Q ss_pred ---ccccCccccc--CccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccH
Q 030337 49 ---YNRLRPLSYR--GADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT 122 (179)
Q Consensus 49 ---~~~~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~ 122 (179)
....+...+. .+|+++++.+.+... +-.++ .+++.+.. .+|+++|+||+|+..... .....
T Consensus 99 ~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~--~~lk~l~~---~v~vi~VinK~D~l~~~e--------~~~~k 165 (276)
T cd01850 99 REESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDI--EFMKRLSK---RVNIIPVIAKADTLTPEE--------LKEFK 165 (276)
T ss_pred HHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHH--HHHHHHhc---cCCEEEEEECCCcCCHHH--------HHHHH
Confidence 2222224454 467777777766421 12222 33444443 589999999999965221 11234
Q ss_pred HHHHHHHHHhCCCeEEEecc
Q 030337 123 AQGEELRKLIGSPAYIECSS 142 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~e~Sa 142 (179)
....+.++.+++ .++....
T Consensus 166 ~~i~~~l~~~~i-~~~~~~~ 184 (276)
T cd01850 166 QRIMEDIEEHNI-KIYKFPE 184 (276)
T ss_pred HHHHHHHHHcCC-ceECCCC
Confidence 556667777787 6666554
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.71 E-value=6.1e-08 Score=83.10 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=57.0
Q ss_pred EEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 28 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.+++ .++.+|||||+.++...+...++.+|++++|+|+++....+.. .+...+... +.|+++++||+|+..
T Consensus 69 ~~~~~~--~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 69 TVFWKG--HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred EEEECC--eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 344444 7899999999998877778889999999999999987666543 333344443 689999999999965
No 261
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.9e-07 Score=66.65 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=66.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCccccc---CccEEEEEEeCCC-hhhHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFILAFSLIS-KASYENV 78 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i~v~d~~~-~~s~~~~ 78 (179)
+|+.+..+|.+.+.+ +++.++ .-...+++. .+++.|.||+.+.+.-...+++ .+-++|||+|..- +....++
T Consensus 53 ~LF~qL~~gs~~~Tv-tSiepn-~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdv 128 (238)
T KOG0090|consen 53 SLFTQLITGSHRGTV-TSIEPN-EATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDV 128 (238)
T ss_pred eeeeehhcCCccCee-eeeccc-eeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHH
Confidence 467777778664432 222211 112223332 3889999999998876666666 7999999999773 3455666
Q ss_pred HHHHHHHHhhc--C-CCCcEEEEEeCCCcccc
Q 030337 79 AKKWIPELRHY--A-PGVPIILVGTKLDLRDD 107 (179)
Q Consensus 79 ~~~~~~~i~~~--~-~~~piilv~nK~D~~~~ 107 (179)
.+.++..+... . +.+|++++.||.|+...
T Consensus 129 aefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 129 AEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 45556555544 2 57999999999999653
No 262
>CHL00071 tufA elongation factor Tu
Probab=98.70 E-value=7.7e-08 Score=77.73 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=68.9
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccccccccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFI 112 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~ 112 (179)
+..++.+.||||+.+|.......+..+|++++|+|+.+...-+.. ..+..+... ++| ++++.||+|+.+...
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~--- 145 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEE--- 145 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHH---
Confidence 345778999999988766555667899999999999875433332 233344433 578 778999999965321
Q ss_pred CCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcH
Q 030337 113 DHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNV 148 (179)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i 148 (179)
....-.++...+.+..+. .+++.+||.+|.|+
T Consensus 146 ----~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 146 ----LLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 000112345555555543 47899999998643
No 263
>PRK00049 elongation factor Tu; Reviewed
Probab=98.69 E-value=1.6e-07 Score=75.54 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=72.7
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCccccccccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFI 112 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~ 112 (179)
...++.+.||||+.+|.......+..+|++++|+|+.+...-+.. .++..+... +.|++ ++.||+|+.+...
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~~--g~p~iiVvvNK~D~~~~~~--- 145 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE--- 145 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHHc--CCCEEEEEEeecCCcchHH---
Confidence 345778999999988766656678899999999999876443332 333444443 57875 6899999964221
Q ss_pred CCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCC----------cHHHHHHHHHHH
Q 030337 113 DHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKV 158 (179)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~----------~i~~~f~~l~~~ 158 (179)
.......+...+....+. .+++.+||++|. ++..+++.|...
T Consensus 146 ----~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 146 ----LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ----HHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 000111234444444432 478999999875 355566555553
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.69 E-value=8.8e-09 Score=73.71 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=60.7
Q ss_pred eehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcc---cccCccEEEEEEeCCC-hhhHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVFILAFSLIS-KASYENVA 79 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~~i~v~d~~~-~~s~~~~~ 79 (179)
|+.++.++.+.+.+.+- ..+....+ -+...-.+.+.|+||+++.+..... +..++.++|||.|.+. +....+++
T Consensus 19 Lf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~A 96 (181)
T PF09439_consen 19 LFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVA 96 (181)
T ss_dssp HHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHH
T ss_pred HHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHH
Confidence 56677777554432222 21111111 1223346899999999998874333 4788999999999974 55677775
Q ss_pred HHHHHHHhhcC---CCCcEEEEEeCCCcccc
Q 030337 80 KKWIPELRHYA---PGVPIILVGTKLDLRDD 107 (179)
Q Consensus 80 ~~~~~~i~~~~---~~~piilv~nK~D~~~~ 107 (179)
+.++..+.... ..+|++|+.||.|+...
T Consensus 97 e~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 97 EYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 66666554332 57999999999999753
No 265
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.5e-08 Score=80.68 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
-+.+.||||+|.|..++......||.+|+|+|+... .+.+.+ +.++.. ++|+||..||+|....+.+.++
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~r--ktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRMR--KTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHhc--CCCeEEeehhhhhhcccccCCC
Confidence 378899999999999999999999999999999854 444443 344443 7999999999999877654322
Q ss_pred CCCCccc-------cH-------HHHHHHHHH-hCC------------CeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 114 HPGAVPI-------TT-------AQGEELRKL-IGS------------PAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 114 ~~~~~~~-------~~-------~~~~~~~~~-~~~------------~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.+..... .. ....+|+.. ++. ..++.+||.+|.||..++.+|+....
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 2211111 00 111122221 111 24567999999999999999988543
No 266
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=1.3e-07 Score=66.39 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=58.1
Q ss_pred ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC
Q 030337 55 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 55 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (179)
..++++|.+++|.|+.++..-.+ ..+.+.+.....+.|+++|.||+|+.+.. ........+.+.+..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~-----------~~~~~~~~~~~~~~~ 70 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW-----------VTARWVKILSKEYPT 70 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH-----------HHHHHHHHHhcCCcE
Confidence 35678999999999998753221 22333343333358999999999995422 111122222222222
Q ss_pred CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 135 PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 135 ~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
..+.+||+++.|++++.+.+...+
T Consensus 71 -~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 -IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -EEEEeeccccccHHHHHHHHHHHH
Confidence 246799999999999999987653
No 267
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.66 E-value=2.8e-07 Score=67.21 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=69.2
Q ss_pred EEEEEeCCCCccccccCc-----ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc-
Q 030337 37 NLGLWDTAGQEDYNRLRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF- 110 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~- 110 (179)
.+.+|||+|......... ..+.++|+++++.+ . +|......|++.+++. ..|+++|+||+|+......
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~-~---~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~ 126 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS-T---RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQR 126 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC-C---CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhc
Confidence 689999999754322222 23677898888743 2 2333324666777665 5799999999999532110
Q ss_pred ccCCCCCccccHHHHHHH----HHH--hCCCeEEEeccC--CCCcHHHHHHHHHHHHhC
Q 030337 111 FIDHPGAVPITTAQGEEL----RKL--IGSPAYIECSSK--TQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~e~Sa~--~~~~i~~~f~~l~~~i~~ 161 (179)
+......+....++.++. ... ...+.++-+|+. .+.++..+.+.++..+-.
T Consensus 127 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 127 SKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 000000011111122222 222 123568889998 578999999988887754
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.65 E-value=1.1e-07 Score=78.87 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=55.0
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..++...+.+.+|||||+..|.......++.+|++|+|+|+++...-+ . ..+....+. .++|+++++||+|+..
T Consensus 73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-T-RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECccccC
Confidence 344555689999999999988776667889999999999998753222 1 234444433 3689999999999864
No 269
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.64 E-value=2e-07 Score=74.93 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=88.9
Q ss_pred CCCCcccCceeecee----------eEEEE-CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-------
Q 030337 12 LGKQDYVPTVFDNFS----------ANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA------- 73 (179)
Q Consensus 12 ~f~~~~~pt~~~~~~----------~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------- 73 (179)
.+.++|.||..|.+. ..+.+ ++ ..+.++|+||+...+..|..++.+++++|||+++++-.
T Consensus 203 I~~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~ 280 (389)
T PF00503_consen 203 IAQPDYIPTDEDILRCRVKTTGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDP 280 (389)
T ss_dssp HHSTTB---HHHHHHS----SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSST
T ss_pred hcCCCccCCCCCeeeecCCCCCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccc
Confidence 356778888654332 22333 33 67899999999989999999999999999999987432
Q ss_pred ---hHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccc--------cCCCCCccccHHHHHHHHHH--------h-
Q 030337 74 ---SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFF--------IDHPGAVPITTAQGEELRKL--------I- 132 (179)
Q Consensus 74 ---s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--------~- 132 (179)
.+.+....|-..+.... .++|++|+.||.|+..+.-.. +.-.+..+-..+.+..+... .
T Consensus 281 ~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~ 360 (389)
T PF00503_consen 281 NTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNS 360 (389)
T ss_dssp TSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTT
T ss_pred hHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCC
Confidence 23443233333333222 589999999999996532110 00011111334444444332 1
Q ss_pred --CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 133 --GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 133 --~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
....+..++|.+..++..+|..+.+.|
T Consensus 361 ~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 361 PSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 111355799999999999999887643
No 270
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.63 E-value=7.5e-08 Score=81.82 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=66.5
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
.++.++||||++.|.......+..+|++++|+|+++...-+.. ..+ ..+... ...|++++.||+|+.+...
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~-~~~~~~-~~~~iivvvNK~D~~~~~~------ 174 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHS-FIASLL-GIRHVVLAVNKMDLVDYDQ------ 174 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHH-HHHHHh-CCCeEEEEEEecccccchh------
Confidence 5678999999998765444567899999999999865433221 111 122222 2357899999999964211
Q ss_pred CCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHHH
Q 030337 116 GAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA 150 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 150 (179)
........+...+.+..+. .+++.+||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000011223334445454 3589999999999874
No 271
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.61 E-value=5.9e-07 Score=72.04 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=82.3
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
++.+.++++|.||||+.+|....+..++-+|++++++|+.+..-.+-- ....+.+. ...+.|+|.||+|.+..+.
T Consensus 63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp- 137 (603)
T COG1217 63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARP- 137 (603)
T ss_pred eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCH-
Confidence 333448999999999999999999999999999999999986533321 12222332 2577888999999976432
Q ss_pred ccCCCCCccccHHHHHHHHHH-------hCCCeEEEeccCCC----------CcHHHHHHHHHHHHhCC
Q 030337 111 FIDHPGAVPITTAQGEELRKL-------IGSPAYIECSSKTQ----------QNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~----------~~i~~~f~~l~~~i~~~ 162 (179)
.++ .++.-.+.-. +++ +++-.|+++| .+...+|+.+++.+-.+
T Consensus 138 -------~~V-vd~vfDLf~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 138 -------DEV-VDEVFDLFVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred -------HHH-HHHHHHHHHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 112 2333444433 344 6777888887 46788899988877544
No 272
>PLN03126 Elongation factor Tu; Provisional
Probab=98.61 E-value=1.1e-07 Score=78.06 Aligned_cols=103 Identities=19% Similarity=0.142 Sum_probs=68.2
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccccccccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFI 112 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~ 112 (179)
+...+.++|+||++.|.......+..+|++++|+|+.+...-+.. +++..+... ++| ++++.||+|+.+...
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~--- 214 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEE--- 214 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHH---
Confidence 346789999999999877666667889999999999976544432 333344443 577 788999999965221
Q ss_pred CCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCc
Q 030337 113 DHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQN 147 (179)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~ 147 (179)
....-.++...+.+..++ .+++.+|+.+|.+
T Consensus 215 ----~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 215 ----LLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred ----HHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 000112244555555432 3789999998854
No 273
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.60 E-value=2.6e-07 Score=61.74 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=71.2
Q ss_pred eeehhhhhCCCCCccc-CceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~-pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.||.++.|.+++. ||+| +..+...+.+.++++++||+.+++.+++.+
T Consensus 15 ~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--- 65 (124)
T smart00010 15 GKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCWRVDDRDSADNK--- 65 (124)
T ss_pred HHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEEEccCHHHHHHH---
Confidence 5788999999987766 7766 333445678899999999999999999754
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
|...+.... .++|+++++||.|+..+. .+..+.+. .++++|++++.|+.
T Consensus 66 ~~~~i~~~~k~dl~~~~~~nk~dl~~~~----------~~~~~~~~---------~~~~~s~~~~~~~~ 115 (124)
T smart00010 66 NVPEVLVGNKSDLPILVGGNRDVLEEER----------QVATEEGL---------EFAETSAKTPEEGE 115 (124)
T ss_pred hHHHHHhcCCCCCcEEEEeechhhHhhC----------cCCHHHHH---------HHHHHhCCCcchhh
Confidence 766665444 478999999999984321 13322222 35567888998885
No 274
>PLN03127 Elongation factor Tu; Provisional
Probab=98.59 E-value=5e-07 Score=73.68 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=71.1
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ 109 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~ 109 (179)
+..+..++.+.||||++.|-.....-...+|++++|+|..+...-+.. +.+..+... ++| ++++.||+|+.++..
T Consensus 119 ~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 119 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred EcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHH
Confidence 333446788999999988765444556679999999999876433332 223344433 578 578899999964221
Q ss_pred cccCCCCCccccHHHHHHHHHHhCC----CeEEEeccC---CCCc-------HHHHHHHHHHHH
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSK---TQQN-------VKAVFDAAIKVV 159 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~---~~~~-------i~~~f~~l~~~i 159 (179)
....-..+...+....+. .+++.+|+. +|.| +.++++.+...+
T Consensus 195 -------~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 195 -------LLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred -------HHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 000011233344443332 367787775 4555 566777766654
No 275
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.58 E-value=2.1e-07 Score=75.94 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY---ENVAKKWIPELRHYAPGVP-IILVGTKLDL 104 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~i~~~~~~~p-iilv~nK~D~ 104 (179)
......+.|.||||+++|.......+..+|++++|+|+++.. .| .....+|. .+... .+| ++++.||+|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~--gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL--GVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc--CCCeEEEEEEcccc
Confidence 334578999999999998877777789999999999998753 11 11112332 33333 555 7799999995
Q ss_pred cc--ccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHH
Q 030337 105 RD--DKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 150 (179)
Q Consensus 105 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 150 (179)
.. ... .......++...+.+..++ .+++.+|+.+|.|+.+
T Consensus 158 ~~~~~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 32 110 0001122344444454443 4789999999999864
No 276
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.58 E-value=4.6e-07 Score=69.22 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.+.+|||||+..|...+...++.+|++++|+|.++....+.. ..| ..+... +.|+++++||+|+..
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~ 130 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRER 130 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCC
Confidence 37899999999988877777889999999999999987665533 233 233333 689999999999865
No 277
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=4.6e-07 Score=62.56 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=52.3
Q ss_pred ccccCccEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC
Q 030337 55 LSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133 (179)
Q Consensus 55 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (179)
..+.++|++++|+|+.++.+..+. ...|+... ..+.|+++|.||+|+.++. ......+..+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~ 71 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEG 71 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcC
Confidence 356789999999999998765531 13443332 2468999999999995422 1223344555566
Q ss_pred CCeEEEeccCCCCc
Q 030337 134 SPAYIECSSKTQQN 147 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~ 147 (179)
. .++.+||+++.+
T Consensus 72 ~-~ii~iSa~~~~~ 84 (141)
T cd01857 72 I-VVVFFSALKENA 84 (141)
T ss_pred C-eEEEEEecCCCc
Confidence 5 789999998764
No 278
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=8.7e-07 Score=62.13 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=54.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 030337 61 DVFILAFSLISKASYENVAKKWIP--ELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 138 (179)
Q Consensus 61 ~~~i~v~d~~~~~s~~~~~~~~~~--~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (179)
|++++|+|+.+|.+.... ++. .+.. .+.|+++|.||+|+..... + ......+.+..+ ...+
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEE
Confidence 679999999988766532 222 2222 3689999999999954210 1 111112322333 3678
Q ss_pred EeccCCCCcHHHHHHHHHHHH
Q 030337 139 ECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 139 e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.+||+++.|++++.+.+....
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEeccCCcChhhHHHHHHHHh
Confidence 999999999999999987764
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.47 E-value=2.1e-07 Score=80.18 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=59.9
Q ss_pred cCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE
Q 030337 18 VPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII 96 (179)
Q Consensus 18 ~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii 96 (179)
..|+..... ....+++..+.+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..|. .+... +.|++
T Consensus 67 g~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~~--~~p~i 142 (720)
T TIGR00490 67 GITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALKE--NVKPV 142 (720)
T ss_pred cchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHHc--CCCEE
Confidence 346653332 3334566678999999999999887777889999999999999875433332 2232 22222 57889
Q ss_pred EEEeCCCccc
Q 030337 97 LVGTKLDLRD 106 (179)
Q Consensus 97 lv~nK~D~~~ 106 (179)
+++||+|...
T Consensus 143 vviNKiD~~~ 152 (720)
T TIGR00490 143 LFINKVDRLI 152 (720)
T ss_pred EEEEChhccc
Confidence 9999999964
No 280
>PRK13796 GTPase YqeH; Provisional
Probab=98.44 E-value=1.5e-06 Score=69.19 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=59.2
Q ss_pred ccCcc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH----HHHHH
Q 030337 57 YRGAD-VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE----ELRKL 131 (179)
Q Consensus 57 ~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 131 (179)
+..++ .+++|+|+.|.. ..|.+.+.+...+.|+++|+||+|+.+.. ...+... .+++.
T Consensus 66 i~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKE 128 (365)
T ss_pred hcccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHh
Confidence 34455 999999998744 23444555444578999999999996522 2233333 34555
Q ss_pred hCCC--eEEEeccCCCCcHHHHHHHHHHH
Q 030337 132 IGSP--AYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 132 ~~~~--~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.++. .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5652 57899999999999999999764
No 281
>PRK01889 GTPase RsgA; Reviewed
Probab=98.41 E-value=8.2e-06 Score=64.84 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCC
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSP 135 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 135 (179)
..|+|.+++|.++..+-....+ +.++..+... ++|.+||.||+|+.++. .+....+.. ..+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g~- 172 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPGV- 172 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCCC-
Confidence 6899999999999744455455 6676666554 67889999999996421 112222222 2354
Q ss_pred eEEEeccCCCCcHHHHHHHHH
Q 030337 136 AYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 136 ~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
+.+.+|++++.|++++..++-
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 789999999999999888874
No 282
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.4e-06 Score=67.71 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=71.5
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.+-++.|-||||+|.|......-...||+.|+++|+-..-.-+.-...++..+ .+=..+++..||+|+.+-.+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL---LGIrhvvvAVNKmDLvdy~e---- 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASL---LGIRHVVVAVNKMDLVDYSE---- 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH---hCCcEEEEEEeeecccccCH----
Confidence 44579999999999998877778889999999999854322221111222222 22356999999999987442
Q ss_pred CCCCccccHHHHHHHHHHhCC--CeEEEeccCCCCcHH
Q 030337 114 HPGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVK 149 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~ 149 (179)
.....-..+-..|++.++. ..++.+||+.|.||.
T Consensus 157 --~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 --EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred --HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 0111112334567777776 357889999999985
No 283
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.36 E-value=5.3e-07 Score=64.26 Aligned_cols=88 Identities=24% Similarity=0.147 Sum_probs=59.5
Q ss_pred CcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh
Q 030337 53 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 132 (179)
Q Consensus 53 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (179)
....++++|.+++|+|+.++....+. .+...+ .+.|+++|.||+|+.+.. ......++.+..
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~ 74 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFESK 74 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHhc
Confidence 34567899999999999887643322 222222 257999999999995321 111111222333
Q ss_pred CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 133 GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 133 ~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+. .++.+||+++.|++++...+...+
T Consensus 75 ~~-~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 GE-KVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHH
Confidence 33 688999999999999999988865
No 284
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.36 E-value=2.3e-05 Score=60.49 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=73.8
Q ss_pred CeEEEEEEEeCCCCccccc-------cCcccccCccEEEEEEeCCChhh-HHHHHHH-----------------------
Q 030337 33 GSTVNLGLWDTAGQEDYNR-------LRPLSYRGADVFILAFSLISKAS-YENVAKK----------------------- 81 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~----------------------- 81 (179)
.+..++||.|+||.-.-.+ ..-...++||.+++|.|+..+.+ .+-+..+
T Consensus 107 Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g 186 (365)
T COG1163 107 YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESG 186 (365)
T ss_pred ecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence 3448899999998532222 23456899999999999997665 3222111
Q ss_pred --------------------HHH----------------------HHhhcCCCCcEEEEEeCCCcccccccccCCCCCcc
Q 030337 82 --------------------WIP----------------------ELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 119 (179)
Q Consensus 82 --------------------~~~----------------------~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 119 (179)
.++ .+.....-+|-+.|.||.|+
T Consensus 187 GI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~--------------- 251 (365)
T COG1163 187 GIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDL--------------- 251 (365)
T ss_pred CEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccc---------------
Confidence 111 11111113788999999998
Q ss_pred ccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 120 ITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.+.+....+.+.. ..+.+||+.+.|++++.+.+.+.+
T Consensus 252 ~~~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 252 PGLEELERLARKP---NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cCHHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhh
Confidence 4444555555554 678999999999999999999976
No 285
>PRK12739 elongation factor G; Reviewed
Probab=98.36 E-value=1.1e-06 Score=75.51 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=55.9
Q ss_pred EEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 28 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.+++ .++.++||||+..|...+...++.+|++++|+|..+...-+.. ..+..+... +.|++++.||+|+..
T Consensus 67 ~~~~~~--~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 67 TCFWKG--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEECC--EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 344455 6789999999988877777889999999999999987655443 333344433 689999999999975
No 286
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.34 E-value=8.8e-06 Score=58.74 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=72.5
Q ss_pred EEEEeCCC----------CccccccCcccccC---ccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 38 LGLWDTAG----------QEDYNRLRPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 38 ~~i~D~~G----------~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
+.+.|.|| ++.+..+...|++. ..+++++.|+-.+..-.+. +.++.+.+. .+|+++|.||+|.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DK 147 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADK 147 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEcccc
Confidence 77899999 34455555666654 4588899998877665543 445555554 7999999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHhCC---Ce--EEEeccCCCCcHHHHHHHHHHHHh
Q 030337 105 RDDKQFFIDHPGAVPITTAQGEELRKLIGS---PA--YIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
..... -.......++.+.. .. ++..|+..+.|++++...|...+.
T Consensus 148 i~~~~-----------~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 148 LKKSE-----------RNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CChhH-----------HHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 76431 11122333333222 12 677899999999999998887654
No 287
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.33 E-value=8.5e-06 Score=68.27 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=83.4
Q ss_pred ECCeEEEEEEEeCCCCccccccCc------ccc--cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRP------LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+..+..++++.|.||.-....... .|+ .++|++|-|.|+++.+.-=.+ --++.+. +.|++++.|++
T Consensus 45 ~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~ 118 (653)
T COG0370 45 LKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMI 118 (653)
T ss_pred EEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccH
Confidence 333445699999999755444322 222 457999999999988754333 1233344 78999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
|...... + .-+.+++.+.+|+ +.+.+||++|.|++++...+.+....+.
T Consensus 119 D~A~~~G----------i-~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 119 DEAKKRG----------I-RIDIEKLSKLLGV-PVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred hhHHhcC----------C-cccHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 9976543 2 2346888999999 8999999999999999999887554433
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.32 E-value=1.3e-05 Score=58.54 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
....+.++.|..--.... .. -++.+|.|+|+.+..+... .+..++ ...-++++||+|+.....
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence 345567888843222222 11 2688999999997666432 111122 123488999999974211
Q ss_pred CCccccHHHHHHHHHH-hCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 116 GAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+...+..+. ....+++++||++|.|++++|+++.+.++
T Consensus 155 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ----ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ----ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333333333 33358999999999999999999997654
No 289
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=6.7e-06 Score=63.41 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=82.8
Q ss_pred eeEEEECC---eEEEEEEEeCCCCcc--ccccC----c--cccc-CccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCC
Q 030337 26 SANVVVDG---STVNLGLWDTAGQED--YNRLR----P--LSYR-GADVFILAFSLISKA--SYENVAKKWIPELRHYAP 91 (179)
Q Consensus 26 ~~~~~~~~---~~~~~~i~D~~G~~~--~~~~~----~--~~~~-~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~ 91 (179)
+|.+.++. +..++|+.||||.-+ +..+. . ..++ -.++++|++|.+... +.+.- .+++..++....
T Consensus 202 TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~ 280 (346)
T COG1084 202 TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK 280 (346)
T ss_pred ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC
Confidence 46666653 335899999999532 11110 0 0122 367999999999765 55554 577788887766
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.|+++|.||+|..... ..+++......-+......+++..+.+++.+-..+......+
T Consensus 281 -~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 281 -APIVVVINKIDIADEE------------KLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred -CCeEEEEecccccchh------------HHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 8999999999996532 233444445555554678889999999998888777765543
No 290
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.8e-06 Score=66.54 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=73.1
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
+....+.+.|.|+||+.+|-...-.-...||++|+|.|+.+.+ .|. ...++. .+.+..+=..++++.||+|.
T Consensus 80 fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tlGi~~lIVavNKMD~ 157 (428)
T COG5256 80 FETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTLGIKQLIVAVNKMDL 157 (428)
T ss_pred eecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhcCCceEEEEEEcccc
Confidence 3445578999999999998887777888999999999999873 110 111111 22222223458999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHH
Q 030337 105 RDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 150 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 150 (179)
.+-+. .+...-..+...+.+..|. ..|+.+|+..|.|+.+
T Consensus 158 v~wde------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 158 VSWDE------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccCH------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 75221 1111122333346666555 2599999999999865
No 291
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.25 E-value=2.5e-05 Score=60.66 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=77.0
Q ss_pred EEEEEeCCCCccc----cccCccc---ccCccEEEEEEeCCChh---hHHHHHHHHHHHHhhcC---CCCcEEEEEeCCC
Q 030337 37 NLGLWDTAGQEDY----NRLRPLS---YRGADVFILAFSLISKA---SYENVAKKWIPELRHYA---PGVPIILVGTKLD 103 (179)
Q Consensus 37 ~~~i~D~~G~~~~----~~~~~~~---~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~---~~~piilv~nK~D 103 (179)
.+.+=|+||.-.- .-+-..| +..+.+++.|.|++..+ ..++. ..+..++.++. .+.|.+||+||+|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccC
Confidence 4778899985432 2233444 45688999999999654 35555 56666777665 3799999999999
Q ss_pred cccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 104 LRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
+..... ........+.+..+....+.+||.++.|++++...+.+.+...
T Consensus 287 ~~~~~e----------~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 287 LPLDEE----------ELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcCHH----------HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 754321 2223333444444442233399999999999999988877554
No 292
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.25 E-value=5.7e-06 Score=63.31 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred CeEEEEEEEeCCCCccc------------cccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 030337 33 GSTVNLGLWDTAGQEDY------------NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 100 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 100 (179)
....++.++||||.-.- .......+.+||.+++|+|++++...-. ...+..+..+ .++|-++|-|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmn 193 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMN 193 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeecc
Confidence 34478999999994221 1111234668999999999997433222 2333344333 3689999999
Q ss_pred CCCcccccccc-----cCCCCCccc-cHHHHHHHHHHh---------C---CCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 101 KLDLRDDKQFF-----IDHPGAVPI-TTAQGEELRKLI---------G---SPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 101 K~D~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~---------~---~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
|.|.....+-- ..+.+.... ..+....+.... | ...++.+||++|+||+++-++|+.++...
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 99997644311 011111111 111111111111 1 12378899999999999999999987643
No 293
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.25 E-value=6.2e-06 Score=63.30 Aligned_cols=88 Identities=23% Similarity=0.135 Sum_probs=59.9
Q ss_pred cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC
Q 030337 54 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133 (179)
Q Consensus 54 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (179)
...++.+|++++|.|+.+|.+..+. .+.+.+ .+.|+++|.||+|+.+.. .. ....+..+..+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~-----------~~-~~~~~~~~~~~ 77 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA-----------VT-KQWLKYFEEKG 77 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH-----------HH-HHHHHHHHHcC
Confidence 4567899999999999887654332 222222 257999999999995321 11 11111223344
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
. .++.+||+++.|+.++.+.+.+.+-
T Consensus 78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 78 I-KALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 4 6899999999999999998887664
No 294
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=4.1e-05 Score=58.82 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred cccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH
Q 030337 48 DYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 126 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
+-..+.+..+.+++-.++|+.+.+|+ +...+ +.++-..... ++..+|+.||+|+.++.. ...++..
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~l-dR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~ 134 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLL-DRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELL 134 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHH-HHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHH
Confidence 44556666777899999999999988 55555 6776555544 677888899999986542 1113455
Q ss_pred HHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 127 ELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 127 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
......+. ..+.+|++++.++.++...+...
T Consensus 135 ~~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 135 REYEDIGY-PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHHhCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence 56677887 89999999999999999887664
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.21 E-value=2e-06 Score=64.62 Aligned_cols=123 Identities=19% Similarity=0.109 Sum_probs=60.7
Q ss_pred EEEEEeCCCCccccccCcccc--------cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSY--------RGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 107 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~ 107 (179)
...|+|||||.++...|...- ...-+++++.|..-..+.......++-.+.-+. -+.|.|.|.||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999987665554433 456689999998754432222122222222111 27999999999999762
Q ss_pred cccc------------cCCCCCccccHHHHHHHHHHhCCC-eEEEeccCCCCcHHHHHHHHHHHH
Q 030337 108 KQFF------------IDHPGAVPITTAQGEELRKLIGSP-AYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 108 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.... .........-.+...++...++.. .++.+|+.++.++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1000 000000000011222223334555 789999999999999998876643
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.14 E-value=4.4e-05 Score=56.11 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+-|.+|.|.-.-.. .+.-..+..+.|+|+++....... .... ...|.++++||+|+.+...
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~------ 165 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG------ 165 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch------
Confidence 3567788888311111 111235566778888765432111 1111 1467899999999964321
Q ss_pred CCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.......+..+..+ ..+++++||++|.|++++|+++.+.
T Consensus 166 ----~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 ----FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ----hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 22233333333332 2479999999999999999999874
No 297
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.13 E-value=1.4e-05 Score=61.71 Aligned_cols=88 Identities=25% Similarity=0.179 Sum_probs=59.8
Q ss_pred cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC
Q 030337 54 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133 (179)
Q Consensus 54 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (179)
...+..+|++++|.|+.++.+..+. .+...+. +.|+++|.||+|+.+.. ..+....+.+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~----~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~~ 80 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP--MIDKIIG----NKPRLLILNKSDLADPE------------VTKKWIEYFEEQG 80 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC----CCCEEEEEEchhcCCHH------------HHHHHHHHHHHcC
Confidence 4567899999999999887654332 2222222 58999999999995311 1111122223335
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
. .++.+||+++.|+.++.+.+...+-
T Consensus 81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 81 I-KALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 4 6889999999999999988877653
No 298
>PRK00007 elongation factor G; Reviewed
Probab=98.08 E-value=1.2e-05 Score=69.30 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=54.7
Q ss_pred EEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 28 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 28 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.+++ .++.+.||||+..|.......++.+|++++|+|.......+.. .. +..+... +.|++++.||+|+..
T Consensus 69 ~~~~~~--~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~-~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 69 TCFWKD--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TV-WRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred EEEECC--eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HH-HHHHHHc--CCCEEEEEECCCCCC
Confidence 344454 6899999999988766556678899999999999877655554 33 3344444 689999999999975
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.00 E-value=1.2e-05 Score=53.66 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=71.8
Q ss_pred EEeCCCCc----cccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 40 LWDTAGQE----DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 40 i~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..||||.- ++.+-......+++++++|-.+++++|.=.- -+ ... ...|+|-|.+|.|+.++
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p--~f----~~~-~~k~vIgvVTK~DLaed-------- 105 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP--GF----LDI-GVKKVIGVVTKADLAED-------- 105 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc--cc----ccc-cccceEEEEecccccch--------
Confidence 57899842 2222223346789999999999998643211 11 111 14679999999999752
Q ss_pred CCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
...+..++|..+-|..+++++|+.+..|++++++.|..
T Consensus 106 ----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 106 ----ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ----HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 45567788888889888999999999999999998865
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.00 E-value=9.4e-05 Score=58.13 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
.+.+.|.||+|...-.. .....+|.++++.+.......+... ..+- ...-++|.||+|+.....
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~----E~aDIiVVNKaDl~~~~~----- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK----KGIM----ELADLIVINKADGDNKTA----- 211 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH----hhhh----hhhheEEeehhcccchhH-----
Confidence 36788999999753221 2467799999997655555555441 1111 123489999999865321
Q ss_pred CCCccccHHHHHHHHHHh------CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 115 PGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
......+........ ..++++.+||+++.|++++++.+.+.+
T Consensus 212 ---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 212 ---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred ---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 000111112222111 114789999999999999999998864
No 301
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.6e-05 Score=61.60 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=58.8
Q ss_pred eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 27 ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..++++.....++|.||||+++|..-+-..+.-+|.+++|.|+...-.-+-+ .+++-.+- .++||+=..||.|...
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREG 147 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeecccccc
Confidence 4466777779999999999999988777778889999999999876544443 23332222 3899999999999865
No 302
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.8e-05 Score=66.24 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+++.+-++|.||||+-.|.......++-+|++++|+|+.+.-.++-- ..++..-+ ++.|+++|.||.|+.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHHH
Confidence 56789999999999999998888899999999999999988877653 33322222 379999999999985
No 303
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=2.5e-05 Score=60.28 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=78.9
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
-++.+.|.||+|-.-....+-..-.|++++|.....+..--...+++. .+.-. .-..+++|.||+|+....+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIi-gik~iiIvQNKIDlV~~E~------ 157 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEII-GIKNIIIVQNKIDLVSRER------ 157 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhh-ccceEEEEecccceecHHH------
Confidence 468899999999765544444555789999999997652222212221 22211 1356999999999965332
Q ss_pred CCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 116 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
--.+.+++++|.+.- .-.+++.+||..+.||+-+++.+.+.+-.+.
T Consensus 158 --AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 158 --ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred --HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 112445556665542 2237999999999999999999999886543
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.91 E-value=0.00011 Score=59.28 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH-HHHHHHHHH
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA-VFDAAIKVV 159 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~-~f~~l~~~i 159 (179)
..|+++|.||.|....+ .....+.+. +...++.+||+.+.++.+ +.+.+++.+
T Consensus 217 ~KPvI~VlNK~D~~~~~--------------~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--------------ENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred CCCEEEEEEchhcccch--------------HHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 48999999999974311 112222222 445789999999999999 566666654
No 305
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=5.4e-05 Score=43.48 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=30.7
Q ss_pred CccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 59 GADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
-.++++|++|++... +.++- ..++..++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 467999999999876 55544 567888888888999999999998
No 306
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.88 E-value=0.0002 Score=54.25 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=67.9
Q ss_pred EEEEEEEeCCCCc-cccccCcc-----cc--cCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 35 TVNLGLWDTAGQE-DYNRLRPL-----SY--RGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 35 ~~~~~i~D~~G~~-~~~~~~~~-----~~--~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
.....|.|||||- -|.+-... .+ ....++++++|... |.+|=.-+-+-...+.+. ..|+++|.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence 3557789999984 33322111 12 23457777777653 344432212222333333 799999999999
Q ss_pred cccccccc---------------cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 104 LRDDKQFF---------------IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 104 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.....-. ........+.......+-+.+.....+-+||.+|.|.++.|..+-..+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 97642100 000000111112222233334334778899999999999998887755
No 307
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00011 Score=58.77 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=77.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
...+.+.|++|++++-+..-.-+...|.+++|++.++. .+-+.+ . .+ +..+-...++|.+|+|..++.+
T Consensus 49 d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL--~---iL-dllgi~~giivltk~D~~d~~r-- 120 (447)
T COG3276 49 DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL--L---IL-DLLGIKNGIIVLTKADRVDEAR-- 120 (447)
T ss_pred CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH--H---HH-HhcCCCceEEEEeccccccHHH--
Confidence 34899999999999887777778899999999999654 344443 1 22 2222345799999999976432
Q ss_pred cCCCCCccccHHHHHHHHHH--hCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 112 IDHPGAVPITTAQGEELRKL--IGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
-.+..++.... +...+++.+|+++|.||+++-+.|.+..-
T Consensus 121 ---------~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 121 ---------IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ---------HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 11222232222 33447899999999999999999999774
No 308
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.87 E-value=1.6e-05 Score=69.73 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=54.1
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
..+.+++.||||+.+|.......++.+|++|+|+|+.+....+.. ..|. .+... +.|++++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~-~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHH-HHHHC--CCCEEEEEECCccc
Confidence 357899999999999988777788999999999999987655543 3343 33332 68999999999997
No 309
>PTZ00416 elongation factor 2; Provisional
Probab=97.84 E-value=1.8e-05 Score=69.39 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+.+.+.||||+.+|.......++.+|++|+|+|+.+....+.. ..| ..+... +.|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHHc--CCCEEEEEEChhhh
Confidence 57899999999998877777788999999999999986555543 333 344433 58999999999997
No 310
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.79 E-value=2.9e-05 Score=67.28 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
+++.+.+.+.||||+.+|.......++.+|++|+|+|.......+.. ..|.. +.+. +.|.+++.||+|+..
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~-~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQ-ALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHH-HHHc--CCCeEEEEECchhhc
Confidence 55578899999999999877777788999999999999876544433 33432 2222 467899999999863
No 311
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.78 E-value=8.2e-05 Score=56.29 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=80.0
Q ss_pred EEEEEEeCCCCcc-------ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQED-------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
-.+.|||+||-++ ++.....++...|.++++.+..|+.=--+ .+++..+.....+.|++++.|.+|....-
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 4589999999765 55556678889999999999999872222 23444554444458999999999996431
Q ss_pred ---ccccCC--CCCccccHHHHHHHHHHh-CCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 109 ---QFFIDH--PGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 109 ---~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...... +..++...++++...+.. ...+++..|...+.|++.+...+++.+-
T Consensus 165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 110000 111111223333322221 2446788888999999999999999764
No 312
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.78 E-value=0.0001 Score=60.01 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=80.0
Q ss_pred eEEEEEEEeCCCCcccc----ccC-----cccccCccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 34 STVNLGLWDTAGQEDYN----RLR-----PLSYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~----~~~-----~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+-.+.++.||||.-+-. ... ....+-..+++|+.|++... |...- ..++..|+....+.|+|+|.||+
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecc
Confidence 34578888999953211 100 11223355899999999876 44443 46777888877899999999999
Q ss_pred CcccccccccCCCCCccccHHHH--HHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQG--EELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
|+..... ++.+.. .+....-+..+++++|+.+..||-++-...+..++..
T Consensus 292 D~m~~ed----------L~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 292 DAMRPED----------LDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cccCccc----------cCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 9965332 444433 2333333434899999999999999888888776643
No 313
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.76 E-value=0.00075 Score=55.48 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=95.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC--CeEEEEEEEeCCCCccccccCcccccCc----cEEEEEEeCCChhhH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGA----DVFILAFSLISKASY 75 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~~i~v~d~~~~~s~ 75 (179)
.|+.++. + .+++.++.|-.|. -.+.-+ ....++.+|-.+|...+..+....+... -.+|+|.|++.|..+
T Consensus 40 tli~~L~-~--~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~ 116 (472)
T PF05783_consen 40 TLIARLQ-G--IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNI 116 (472)
T ss_pred HHHHHhh-c--cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHH
Confidence 3555543 3 2456677775554 222211 2345799999998777776665555432 388999999999655
Q ss_pred HHHHHHHHHHHhhc-------------------------C----------------------------C----------C
Q 030337 76 ENVAKKWIPELRHY-------------------------A----------------------------P----------G 92 (179)
Q Consensus 76 ~~~~~~~~~~i~~~-------------------------~----------------------------~----------~ 92 (179)
-+-...|+..+++. . + .
T Consensus 117 ~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlG 196 (472)
T PF05783_consen 117 MESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLG 196 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccC
Confidence 32223343222111 0 0 2
Q ss_pred CcEEEEEeCCCcccccccc-cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 93 VPIILVGTKLDLRDDKQFF-IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 93 ~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+|++||.+|+|....-... +-..+....-....+.+|-.+|. ..+.+|++...+++.++..|...+..
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhcc
Confidence 7999999999985321100 00011111233557788999998 78889999999999999998887764
No 314
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=56.85 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=76.6
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW-IPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
.+++.++.+.|.||+...-...-.-..-.|..++|.|+.....-+.+ +.+ +..+ . ....++|.||+|...+++
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtA-EcLiig~~--~--c~klvvvinkid~lpE~q- 139 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTA-ECLIIGEL--L--CKKLVVVINKIDVLPENQ- 139 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccc-hhhhhhhh--h--ccceEEEEeccccccchh-
Confidence 46778999999999975433222223346788999999876555444 222 2222 1 345788899999877542
Q ss_pred ccCCCCCcccc-HHHHHHHHHHh------CCCeEEEeccCCC----CcHHHHHHHHHHHHhCCchh
Q 030337 111 FIDHPGAVPIT-TAQGEELRKLI------GSPAYIECSSKTQ----QNVKAVFDAAIKVVLQPPKQ 165 (179)
Q Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~e~Sa~~~----~~i~~~f~~l~~~i~~~~~~ 165 (179)
|... .+.+..+.+.+ |..+++++||+.| ++|.++-+.|-.++.++.+-
T Consensus 140 -------r~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 140 -------RASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred -------hhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 2222 12233333332 3257999999999 77888888888888776543
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=6e-05 Score=64.50 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=59.3
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+.+ .+.+++.|||||-+|.......++-+|++|+|+|+...-..+.- ..|.. ..++ ++|.+++.||+|+...
T Consensus 70 ~~~~~-~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rq-a~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 70 LFWKG-DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQ-ADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred EEEcC-ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHH-Hhhc--CCCeEEEEECcccccc
Confidence 33443 58999999999999999988999999999999999987766654 34543 3333 7999999999999653
No 316
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.74 E-value=0.00022 Score=47.20 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=43.3
Q ss_pred eEEEECCeEEEEEEEeCCCCccccc---------cCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEE
Q 030337 27 ANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 97 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 97 (179)
..+.+++.. +.++||||-..-.. .....+..+|++++|+|.+++..- .. ..+++.++ .+.|+++
T Consensus 40 ~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~-~~-~~~~~~l~---~~~~~i~ 112 (116)
T PF01926_consen 40 GQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITE-DD-KNILRELK---NKKPIIL 112 (116)
T ss_dssp EEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHH-HH-HHHHHHHH---TTSEEEE
T ss_pred eeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCH-HH-HHHHHHHh---cCCCEEE
Confidence 344556744 56999999643111 122234889999999998884321 11 34444453 4799999
Q ss_pred EEeC
Q 030337 98 VGTK 101 (179)
Q Consensus 98 v~nK 101 (179)
|.||
T Consensus 113 v~NK 116 (116)
T PF01926_consen 113 VLNK 116 (116)
T ss_dssp EEES
T ss_pred EEcC
Confidence 9998
No 317
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00023 Score=57.79 Aligned_cols=129 Identities=25% Similarity=0.198 Sum_probs=78.7
Q ss_pred CceeeceeeEEEECCeEEEEEEEeCCCCcc-cccc--------CcccccCccEEEEEEeC--CChhhHHHHHHHHHHHHh
Q 030337 19 PTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRL--------RPLSYRGADVFILAFSL--ISKASYENVAKKWIPELR 87 (179)
Q Consensus 19 pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~i~ 87 (179)
-|..|-+...+.++| +.+.+.||+|... -... ...-++.+|++++|+|+ ++-++--.+ ...+....
T Consensus 301 GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~ 377 (531)
T KOG1191|consen 301 GTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI-ARILETEG 377 (531)
T ss_pred CcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH-HHHHHHhc
Confidence 344567777788888 7788999999644 1111 12236789999999999 333333332 23333332
Q ss_pred hcC-------CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH--Hh-CCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 88 HYA-------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK--LI-GSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 88 ~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.-. ...|++++.||.|+..... +... ....+.. .. ......++|+++++++..+.+.+..
T Consensus 378 ~g~~~~~~~~~~~~~i~~~nk~D~~s~~~---------~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 378 VGLVVIVNKMEKQRIILVANKSDLVSKIP---------EMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred cceEEEeccccccceEEEechhhccCccc---------cccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 221 1489999999999976421 0110 0011111 11 1224567999999999999999888
Q ss_pred HHh
Q 030337 158 VVL 160 (179)
Q Consensus 158 ~i~ 160 (179)
.+.
T Consensus 448 ~~~ 450 (531)
T KOG1191|consen 448 IVE 450 (531)
T ss_pred HHH
Confidence 664
No 318
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.62 E-value=0.00012 Score=55.15 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCcccCceeec----------eeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh----------
Q 030337 14 KQDYVPTVFDN----------FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---------- 73 (179)
Q Consensus 14 ~~~~~pt~~~~----------~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------- 73 (179)
..+|.|+-.+. +..++.++- +.++.+|++||..-+..|-+.++++.++|+|...++-.
T Consensus 172 ~~~Y~Ps~qDiLrcRvlTsGIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qN 249 (379)
T KOG0099|consen 172 QADYVPSDQDILRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQN 249 (379)
T ss_pred ccCCCCcHHHHHHhhhhccceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchh
Confidence 36788875432 233343443 78999999999999999999999999999999877431
Q ss_pred hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCccc
Q 030337 74 SYENVAKKWIPELRHYA--PGVPIILVGTKLDLRD 106 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~ 106 (179)
.+++. -.+++.+..+. ..+.+||..||.|+..
T Consensus 250 RL~Ea-L~LFksiWnNRwL~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 250 RLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLA 283 (379)
T ss_pred HHHHH-HHHHHHHHhhhHHhhhheeEEecHHHHHH
Confidence 22222 12233333332 4688999999999964
No 319
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.52 E-value=0.0021 Score=46.67 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=71.9
Q ss_pred EECCeEEEEEEEeCCCCccccc--------c---CcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCcE
Q 030337 30 VVDGSTVNLGLWDTAGQEDYNR--------L---RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPI 95 (179)
Q Consensus 30 ~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~pi 95 (179)
.+++ ..+.++||||-..... + ......++|++++|.++.+ .+-.+ ...++.+++..+ -.++
T Consensus 45 ~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ 119 (196)
T cd01852 45 VWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHT 119 (196)
T ss_pred EECC--eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcE
Confidence 3455 5789999999644321 0 1123468999999999987 33332 244555555432 2678
Q ss_pred EEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEec-----cCCCCcHHHHHHHHHHHHhC
Q 030337 96 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS-----SKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 96 ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S-----a~~~~~i~~~f~~l~~~i~~ 161 (179)
++|.|+.|........ .-........+.+.+..+. .++..+ +..+.++.++++.+-+.+.+
T Consensus 120 ivv~T~~d~l~~~~~~----~~~~~~~~~l~~l~~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 120 IVLFTRGDDLEGGTLE----DYLENSCEALKRLLEKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEECccccCCCcHH----HHHHhccHHHHHHHHHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 9999999976532100 0000011344555666554 444433 45678889998888877654
No 320
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00038 Score=57.56 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCcEEEEEe
Q 030337 27 ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVPIILVGT 100 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~piilv~n 100 (179)
++..++.....+.|.|+||+..|.+..-.-...||++|+|+|++-.+ .|+ .. .+....++.. +=..++++.|
T Consensus 246 ~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQt-rEha~llr~L-gi~qlivaiN 323 (603)
T KOG0458|consen 246 KTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQT-REHALLLRSL-GISQLIVAIN 323 (603)
T ss_pred eeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCch-HHHHHHHHHc-CcceEEEEee
Confidence 33445566678999999999999887777888999999999987432 222 11 1222233333 2346899999
Q ss_pred CCCcccccccccCCCCCccccHHHHHHHH-HHhCC----CeEEEeccCCCCcHHHH
Q 030337 101 KLDLRDDKQFFIDHPGAVPITTAQGEELR-KLIGS----PAYIECSSKTQQNVKAV 151 (179)
Q Consensus 101 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~i~~~ 151 (179)
|+|+..=.+ .+...-......|. +..|+ ..|+.||+..|+|+.+.
T Consensus 324 KmD~V~Wsq------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQ------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccH------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999974211 01111122233444 44444 26999999999998755
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.50 E-value=0.0009 Score=52.05 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
.+.+.|.||+|.-... ...+..+|.++++-+.. +-+++ ......+. ..|.++|.||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~----- 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATN----- 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhH-----
Confidence 4678899999964211 23566788888875433 33333 22222222 578899999999965321
Q ss_pred CCCccccH--H----HHHHHHHH-hCC-CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 115 PGAVPITT--A----QGEELRKL-IGS-PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 115 ~~~~~~~~--~----~~~~~~~~-~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
... . ....+.+. .++ .+++.+||+++.|++++++++.+..
T Consensus 190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 110 0 00111111 121 2589999999999999999998853
No 322
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.46 E-value=0.00071 Score=50.42 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=57.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccccccC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~ 113 (179)
..++.+.||+|.- ..+ ....+.+|++++|+|.+.....+.. .++..+... ..| +++|.||+|+.+...
T Consensus 82 ~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~---- 150 (225)
T cd01882 82 KRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNK---- 150 (225)
T ss_pred CceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHH----
Confidence 4567899999863 122 2346889999999999876544432 344444443 467 456999999964221
Q ss_pred CCCCccccHHHHHH-HHH-HhCCCeEEEeccCCCC
Q 030337 114 HPGAVPITTAQGEE-LRK-LIGSPAYIECSSKTQQ 146 (179)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~-~~~~~~~~e~Sa~~~~ 146 (179)
.........+. +.. .....+++.+||++.-
T Consensus 151 ---~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 151 ---TLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ---HHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 00001112222 222 2233489999999873
No 323
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00082 Score=50.18 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=71.5
Q ss_pred eEEEEEEEeCCCCccccc-c--CcccccCccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 34 STVNLGLWDTAGQEDYNR-L--RPLSYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~-~--~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
.-+.+++||.|||-.+-. . ....++++.++|+|.|+-+.. ....+ ........+..+++.+=+..+|.|-..+.
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L-~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARL-HMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHH-HHHhhheeecCCCceEEEEEEeccCCchh
Confidence 346799999999975432 2 234689999999999976432 22222 22222223334688888999999987544
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.. ...++.+......+++ ..|. ..|+-+|. ..+.|-++|-.+++.++..
T Consensus 152 ~k---ietqrdI~qr~~d~l~-d~gle~v~vsf~LTSI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 152 FK---IETQRDIHQRTNDELA-DAGLEKVQVSFYLTSI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred hh---hhhHHHHHHHhhHHHH-hhhhccceEEEEEeee-cchHHHHHHHHHHHHHhhh
Confidence 20 0111111111112222 2222 14555554 4678999999988877643
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.39 E-value=0.001 Score=52.74 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=69.6
Q ss_pred EEEEEeCCCCcccccc--CcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc---
Q 030337 37 NLGLWDTAGQEDYNRL--RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--- 111 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--- 111 (179)
.+.+.||.|+|+|-.. .-..-...|-.++++.++|-.+--.- +++ ..+-.. ..|++++.+|+|+.++....
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHL-gi~~a~--~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHL-GIALAM--ELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhh-hhhhhh--cCCEEEEEEecccCcHHHHHHHH
Confidence 4788999999987552 22345678989999998887644321 221 111112 69999999999998765422
Q ss_pred ------cCCCCCcc--c-cHHHH---HHHHHH-hCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 112 ------IDHPGAVP--I-TTAQG---EELRKL-IGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 112 ------~~~~~~~~--~-~~~~~---~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
-.+.++-+ + +...+ ....+. .+..+++.+|+.+|+|++-+.+.+.
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 00000000 0 11111 112222 3356899999999999876655543
No 325
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.19 E-value=0.0042 Score=48.43 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=81.7
Q ss_pred eEEEEEEEeCCCCccccccCccccc---Ccc-EEEEEEeCCChhh-HHHHHHHHHHHHhhc-------------------
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYR---GAD-VFILAFSLISKAS-YENVAKKWIPELRHY------------------- 89 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~---~~~-~~i~v~d~~~~~s-~~~~~~~~~~~i~~~------------------- 89 (179)
...++.+|=..|...-..+....+. -++ .+|++.|+++|.. .+.+ ..|..-++++
T Consensus 98 d~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesL-qkWa~Vl~ehidkl~i~~ee~ka~rqk~~ 176 (473)
T KOG3905|consen 98 DLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESL-QKWASVLREHIDKLKIPPEEMKAGRQKLE 176 (473)
T ss_pred hhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3467888987776544443332222 233 7888999999953 3444 6665443322
Q ss_pred ------C-------------------------------------CCCcEEEEEeCCCccccccc-ccCCCCCccccHHHH
Q 030337 90 ------A-------------------------------------PGVPIILVGTKLDLRDDKQF-FIDHPGAVPITTAQG 125 (179)
Q Consensus 90 ------~-------------------------------------~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 125 (179)
. -.+|+++|.+|+|...--.. ..-+.+....-....
T Consensus 177 k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l 256 (473)
T KOG3905|consen 177 KDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL 256 (473)
T ss_pred HHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH
Confidence 0 03899999999998321000 001111122334567
Q ss_pred HHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 126 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 126 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+.||..+|. ..+.+|++...|++-++..|+..++.
T Consensus 257 RkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 257 RKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred HHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 889999998 89999999999999999999987754
No 326
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.08 E-value=0.00015 Score=53.74 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=91.4
Q ss_pred CCcccCceeeceeeEEE--------ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh----------hH
Q 030337 14 KQDYVPTVFDNFSANVV--------VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----------SY 75 (179)
Q Consensus 14 ~~~~~pt~~~~~~~~~~--------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~ 75 (179)
.+.|.||-.+-...++. ++-..+.+.+.|++|+...+..|-..+.++..+++++.++.-+ ..
T Consensus 169 ~~~ylPTqQDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRM 248 (359)
T KOG0085|consen 169 TPGYLPTQQDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRM 248 (359)
T ss_pred CcccCcchhhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhH
Confidence 56777876544433222 2335678999999999988888989999988888887766432 22
Q ss_pred HHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccc-------cCCCCCccccHHHHHHHHHH----hCC-----CeE
Q 030337 76 ENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFF-------IDHPGAVPITTAQGEELRKL----IGS-----PAY 137 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~-----~~~ 137 (179)
++. ..++..|-.+. .+.+||+..||.|+.++...- +.-.+. +.....++++... ++- ..-
T Consensus 249 eES-kALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP-~qDa~AAreFILkm~~d~nPd~dKii~S 326 (359)
T KOG0085|consen 249 EES-KALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGP-KQDAQAAREFILKMYVDMNPDSDKIIYS 326 (359)
T ss_pred HHH-HHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCC-cccHHHHHHHHHHHHHhhCCCccceeee
Confidence 222 22333333322 589999999999998754210 000000 1233445554333 111 112
Q ss_pred EEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 138 IECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 138 ~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..++|.+..||.-+|..+-+.+++.
T Consensus 327 HfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 327 HFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred eeeecccchhHHHHHHHHHHHHHHh
Confidence 4578899999999999998887753
No 327
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.01 E-value=0.00092 Score=47.05 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=44.6
Q ss_pred EEEEEeCCCCcc----ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 37 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 37 ~~~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
.+.|.||||-.. ....+..+++.+|++|+|.+.++..+-.+. ..|....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 489999999643 224566788999999999999987665554 4555555444 33488898984
No 328
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.90 E-value=0.0061 Score=47.46 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=43.8
Q ss_pred ECCeEEEEEEEeCCCCccccccCc-------ccc--cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCcEEEE
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRP-------LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILV 98 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~-------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv 98 (179)
.++ .++.+|||||......... .++ .+.|++++|.+++... +.......++.++...+ -.++++|
T Consensus 83 ~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 83 RAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred ECC--eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 355 6799999999764322111 111 2699999997665322 21111244555555442 3579999
Q ss_pred EeCCCccc
Q 030337 99 GTKLDLRD 106 (179)
Q Consensus 99 ~nK~D~~~ 106 (179)
.|+.|..+
T Consensus 160 fTh~d~~~ 167 (313)
T TIGR00991 160 LTHAQFSP 167 (313)
T ss_pred EECCccCC
Confidence 99999764
No 329
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.017 Score=46.02 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=68.7
Q ss_pred EEEEEeCCCCccccccCccccc--CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc---
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--- 111 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--- 111 (179)
-+.+.|.+|+.+|....-.-+. ..|..++|+++.......- .+-+..+... ++|++++.+|+|+.......
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHHHHH
Confidence 4788999999988765433332 3677888888776543321 1222233333 79999999999998652211
Q ss_pred -----------cCCCCCccccHHHHHHHHHHh---CCCeEEEeccCCCCcHHHH
Q 030337 112 -----------IDHPGAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~ 151 (179)
+.....+..+..++...+++. ++.+++.+|+.+|.++.-+
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 122222333445555555543 4457889999999987644
No 330
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.78 E-value=0.011 Score=47.96 Aligned_cols=86 Identities=13% Similarity=0.213 Sum_probs=56.0
Q ss_pred cc-CccEEEEEE-eCC----ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH
Q 030337 57 YR-GADVFILAF-SLI----SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 130 (179)
Q Consensus 57 ~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (179)
+. ++++.|+|. |.+ .++.+......|+..+++. +.|+++|.||.|-... .....+.++..
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~e 206 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHP------------ETEALRQELEE 206 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHH
Confidence 45 788888888 664 1234444446788888877 8999999999994221 23334456666
Q ss_pred HhCCCeEEEeccCC--CCcHHHHHHHHHH
Q 030337 131 LIGSPAYIECSSKT--QQNVKAVFDAAIK 157 (179)
Q Consensus 131 ~~~~~~~~e~Sa~~--~~~i~~~f~~l~~ 157 (179)
.++. +++.+|+.+ ...|..+++.++.
T Consensus 207 ky~v-pvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 207 KYDV-PVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HhCC-ceEEEEHHHcCHHHHHHHHHHHHh
Confidence 6776 566655544 4567777766554
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0069 Score=46.64 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=63.3
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCC
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPG 116 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 116 (179)
..--.|.||+.+|-...-.-....|+.|+|+.++|-.-.+-. ++. .+.++..-.-++++.||+|+.++..
T Consensus 76 hyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi--LlarqvGvp~ivvflnK~Dmvdd~e------- 145 (394)
T COG0050 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQVGVPYIVVFLNKVDMVDDEE------- 145 (394)
T ss_pred eEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhhcCCcEEEEEEecccccCcHH-------
Confidence 455689999998877655666789999999999996533332 222 2223322234888999999976432
Q ss_pred CccccHHHHHHHHHHhCCC----eEEEeccCC
Q 030337 117 AVPITTAQGEELRKLIGSP----AYIECSSKT 144 (179)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~----~~~e~Sa~~ 144 (179)
....-..+.+++...++.+ +++.-||+.
T Consensus 146 llelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 146 LLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 1112345567788888773 456656554
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.59 E-value=0.0056 Score=43.69 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 61 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 61 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
|++++|.|+.+|.+-.+ ..+.+.+.-...+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 68999999998754332 233333211113689999999999954
No 333
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.57 E-value=0.016 Score=41.30 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=56.7
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
..+.+.|.|||+...- .....+..+|.++++...+ ..+...+ ..+.+.+++. +.|+.+|.||.|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~------- 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLND------- 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCc-------
Confidence 4578899999975321 2234568899999999987 4455555 5666666654 567899999998643
Q ss_pred CCCCccccHHHHHHHHHHhCC
Q 030337 114 HPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~ 134 (179)
....++.++.+..+.
T Consensus 158 ------~~~~~~~~~~~~~~~ 172 (179)
T cd03110 158 ------EIAEEIEDYCEEEGI 172 (179)
T ss_pred ------chHHHHHHHHHHcCC
Confidence 223456677777777
No 334
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.011 Score=46.45 Aligned_cols=96 Identities=19% Similarity=0.130 Sum_probs=62.1
Q ss_pred EEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCcc
Q 030337 40 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 119 (179)
Q Consensus 40 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 119 (179)
=.|.||+.+|-...-.-...-|++|+|+..+|..=.+-- +++ .+.++..=..+++..||.|..++.. ...
T Consensus 121 H~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTr-EHl--LLArQVGV~~ivvfiNKvD~V~d~e-------~le 190 (449)
T KOG0460|consen 121 HTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTR-EHL--LLARQVGVKHIVVFINKVDLVDDPE-------MLE 190 (449)
T ss_pred cCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchH-HHH--HHHHHcCCceEEEEEecccccCCHH-------HHH
Confidence 368999988877555566778999999999996533322 222 2333333345889999999985432 222
Q ss_pred ccHHHHHHHHHHhCC----CeEEE---eccCCC
Q 030337 120 ITTAQGEELRKLIGS----PAYIE---CSSKTQ 145 (179)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~~e---~Sa~~~ 145 (179)
.-.-+++++...+|. .+++. .||+.|
T Consensus 191 LVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg 223 (449)
T KOG0460|consen 191 LVEMEIRELLSEFGFDGDNTPVIRGSALCALEG 223 (449)
T ss_pred HHHHHHHHHHHHcCCCCCCCCeeecchhhhhcC
Confidence 344567788888876 24555 455566
No 335
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.46 E-value=0.009 Score=46.12 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=39.9
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-hCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..+-++|.||+|+..... ...+...+..+. ....+++.+||++|.|++++.+||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467889999999964211 223333333333 334489999999999999999999764
No 336
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.36 E-value=0.0081 Score=45.22 Aligned_cols=68 Identities=24% Similarity=0.162 Sum_probs=44.4
Q ss_pred EEEEEEeCCCCccc-------------cccCcccccC-ccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 36 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 36 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
..+.+.||||-... ..+...|+++ .+.+++|.|....-+-++. ..+.+.+... ..|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 57999999997421 1234556775 4588999987653332222 2333444433 6899999999
Q ss_pred CCccc
Q 030337 102 LDLRD 106 (179)
Q Consensus 102 ~D~~~ 106 (179)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99975
No 337
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0062 Score=51.02 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=56.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
.++++|.||||+-+|.-.....++--|++|+|.|......-+.. ..|. +++++ ++|-+...||+|.-..+
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~r-Q~~ry--~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWR-QMKRY--NVPRICFINKMDRMGAS 172 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhH-HHHH-HHHhc--CCCeEEEEehhhhcCCC
Confidence 57899999999999998888899999999999998876544444 4554 44455 79999999999996543
No 338
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.27 E-value=0.23 Score=37.75 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 120 ITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
++.++...+++..+. +-+|+....|++.+++.+...+-
T Consensus 251 vs~eevdrlAr~Pns---vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 251 VSIEEVDRLARQPNS---VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecHHHHHHHhcCCCc---EEEEeccccCHHHHHHHHHHHhc
Confidence 777888888877654 56777888999999999998764
No 339
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.25 E-value=0.071 Score=40.41 Aligned_cols=75 Identities=19% Similarity=0.116 Sum_probs=45.3
Q ss_pred EECCeEEEEEEEeCCCCccccc---c-------Cccccc--CccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC---CC
Q 030337 30 VVDGSTVNLGLWDTAGQEDYNR---L-------RPLSYR--GADVFILAFSLISKA-SYENVAKKWIPELRHYAP---GV 93 (179)
Q Consensus 30 ~~~~~~~~~~i~D~~G~~~~~~---~-------~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~---~~ 93 (179)
..++ ..+.+|||||-..... . ...++. ..+++++|..++... +..+ ...++.++...+ -.
T Consensus 75 ~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~ 150 (249)
T cd01853 75 TVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWR 150 (249)
T ss_pred EECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHh
Confidence 3455 5789999999754421 0 112332 578888887766432 3332 244555554332 25
Q ss_pred cEEEEEeCCCccccc
Q 030337 94 PIILVGTKLDLRDDK 108 (179)
Q Consensus 94 piilv~nK~D~~~~~ 108 (179)
++++|.||+|.....
T Consensus 151 ~~ivV~T~~d~~~p~ 165 (249)
T cd01853 151 NAIVVLTHAASSPPD 165 (249)
T ss_pred CEEEEEeCCccCCCC
Confidence 799999999997533
No 340
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.0081 Score=51.50 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=52.5
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV---AKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~---~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
+-.+.+.+++.|+||+-+|.+......+-+|++++++|+...-.-+-. ...|. .....++|.||+|.
T Consensus 67 ~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 67 LLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKIDR 136 (887)
T ss_pred cccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-------ccCceEEEEehhhh
Confidence 434668999999999999999999999999999999999876544432 22232 24668899999995
No 341
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.17 E-value=0.016 Score=41.97 Aligned_cols=103 Identities=14% Similarity=-0.016 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+-+.+.+| .. ..-. ++.=..+.-|+|.|++.-+-.-. .-.+.+ -..=++|.||.|+.+.-.
T Consensus 97 ~Dll~iEs~G-NL-~~~~-sp~L~d~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~v~------ 159 (202)
T COG0378 97 LDLLFIESVG-NL-VCPF-SPDLGDHLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPYVG------ 159 (202)
T ss_pred CCEEEEecCc-ce-eccc-CcchhhceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHHhC------
Confidence 4566777777 21 1111 11112347788888886542210 000111 124578999999976443
Q ss_pred CCccccHHHHHHHHHH-hCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.+.+...+-++. ..-.+++++|+++|.|+++++.|+....
T Consensus 160 ----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ----ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 444555554444 3334899999999999999999987654
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.88 E-value=0.0081 Score=47.25 Aligned_cols=93 Identities=23% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCCc-cccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCcccc
Q 030337 43 TAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121 (179)
Q Consensus 43 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 121 (179)
.+|+. .+.......+..+|+++-|.|+-+|.+-..- .+.+...+.|.++|+||.|+.+.. +.
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-----------~~ 79 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-----------VT 79 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-----------HH
Confidence 46653 4444556678899999999999999865543 222333346669999999996533 33
Q ss_pred HHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 122 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
......+.+..+. ..+.++++.+.+...+..
T Consensus 80 ~~W~~~~~~~~~~-~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 80 KKWKKYFKKEEGI-KPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHHHHhcCCC-ccEEEEeecccCccchHH
Confidence 3333444444444 467777777766555553
No 343
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.0017 Score=52.07 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=58.4
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.++=+.+++++.||||+-+|+-..+..++--|+++.|||.+-...-+.+ ..|.. ..++ ++|-....||+|....
T Consensus 95 v~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtl-tvwrq-adk~--~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 95 VNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQ-ADKF--KIPAHCFINKMDKLAA 169 (753)
T ss_pred eecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCccccee-eeehh-cccc--CCchhhhhhhhhhhhh
Confidence 33455668999999999999998888899999999999999876666655 45632 2222 7888999999998653
No 344
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.58 E-value=0.04 Score=45.44 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=50.2
Q ss_pred cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH---Hh
Q 030337 56 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK---LI 132 (179)
Q Consensus 56 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 132 (179)
.+..+|++|.++|+-+|--|..- .+..+++...++...+|+.||.|+. ..++...|++ ..
T Consensus 171 VlErSDivvqIVDARnPllfr~~--dLe~Yvke~d~~K~~~LLvNKaDLl---------------~~~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSP--DLEDYVKEVDPSKANVLLVNKADLL---------------PPEQRVAWAEYFRQN 233 (562)
T ss_pred HHhhcceEEEEeecCCccccCCh--hHHHHHhccccccceEEEEehhhcC---------------CHHHHHHHHHHHHhc
Confidence 46789999999999999766542 4444555554567889999999994 4444454443 44
Q ss_pred CCCeEEEeccCC
Q 030337 133 GSPAYIECSSKT 144 (179)
Q Consensus 133 ~~~~~~e~Sa~~ 144 (179)
++ .++.-||..
T Consensus 234 ni-~~vf~SA~~ 244 (562)
T KOG1424|consen 234 NI-PVVFFSALA 244 (562)
T ss_pred Cc-eEEEEeccc
Confidence 55 788878876
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.25 E-value=0.25 Score=38.32 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
.+-+.|.+|.|.-+.. ....+-+|.+++|.=..--+..|.++.-.+ .+.=++|.||.|+.....
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A~~----- 206 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGAEK----- 206 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhHHH-----
Confidence 3557788888753321 134567899999887766667776633222 244578899999755321
Q ss_pred CCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 115 PGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
..-....+..+.. ....++.+.+||..|.|++++++.+.+..
T Consensus 207 ---a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 207 ---AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ---HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 0111112222221 11225789999999999999999988854
No 346
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.16 E-value=0.18 Score=40.36 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=38.8
Q ss_pred EEEEEEeCCCCccccccCcc--cccCccEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
-.+.+.|.+|+|+|-...-. .-+-.|-..++.-..-. -+-+.+ ...-. -++|+.+|.+|+|.++.+
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL-----gLALa--L~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL-----GLALA--LHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhh-----hhhhh--hcCcEEEEEEeeccCcHH
Confidence 35889999999998664322 12234555555543311 122222 11111 179999999999998765
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.76 E-value=0.089 Score=39.96 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=57.9
Q ss_pred EEEEEEeCCC--CccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 36 VNLGLWDTAG--QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 36 ~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
+.+.|.+|.| |... ....-+|.+++|.-..--+..|.++.-.+ .++=++|.||+|+.....
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGim--------EiaDi~vVNKaD~~gA~~---- 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIM--------EIADIFVVNKADRPGADR---- 184 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHH--------HH-SEEEEE--SHHHHHH----
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhh--------hhccEEEEeCCChHHHHH----
Confidence 3455666665 3332 23456888999988776666665522222 134578889999765332
Q ss_pred CCCCccccHHHHHHHHHHh------CCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 114 HPGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
...+.+...... ..++.+.+||.++.||+++++.+.+.
T Consensus 185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 112222222211 12589999999999999999998874
No 348
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.73 E-value=0.027 Score=45.07 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=38.3
Q ss_pred cccccCcccccCccEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 48 DYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.|.......+..+|++|.|.|+-||.+-..- .+.| +....++...|+|.||+|+.+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhccCC
Confidence 3444445567889999999999999744321 1333 323334688999999999943
No 349
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=94.69 E-value=0.7 Score=32.95 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=66.8
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeE
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (179)
..+|-++|++|++...|++.+ +.-+..+....--=.+.++++-....+... +......+++..+++ ++
T Consensus 63 prIDlIVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-pl 130 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PL 130 (176)
T ss_pred ceeEEEEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CE
Confidence 358999999999999999998 555555543332234667777766655443 888999999999999 78
Q ss_pred EEeccCCCCcHHHHHHHHHHHH
Q 030337 138 IECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 138 ~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.+.-.+..+...+=+.|++.+
T Consensus 131 L~~~le~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 131 LFADLENEEGRTSLAQRLLRML 152 (176)
T ss_pred EEeecccchHHHHHHHHHHHHH
Confidence 8888777777777767766654
No 350
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.066 Score=42.72 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=43.4
Q ss_pred EEEEEeCCCCcccc-----------ccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 37 NLGLWDTAGQEDYN-----------RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 37 ~~~i~D~~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+.|.||||.-... ....=+...+|.++++||....+--.+. ...+..++.+ .-.+-||.||+|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeEEEecccccc
Confidence 38899999953211 1122246789999999998876533333 3334455443 45678889999985
Q ss_pred c
Q 030337 106 D 106 (179)
Q Consensus 106 ~ 106 (179)
+
T Consensus 225 d 225 (532)
T KOG1954|consen 225 D 225 (532)
T ss_pred C
Confidence 4
No 351
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.04 Score=42.77 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=67.4
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccccc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 112 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 112 (179)
.+.+.|.||++-.-.....-..-.|+++++.....+ .+-+.+. -. ++.+ -..++++.||.|+..++.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--av-eiM~---LkhiiilQNKiDli~e~~--- 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AV-EIMK---LKHIIILQNKIDLIKESQ--- 196 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HH-HHhh---hceEEEEechhhhhhHHH---
Confidence 477889999975433222222224556666555543 3334331 11 2222 256999999999976542
Q ss_pred CCCCCccccHHHHHHHHHHhC--CCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 113 DHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
-....++...|.+.-. -.+++.+||--++||+-+.+.+++.+-.+
T Consensus 197 -----A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 197 -----ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred -----HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 0112334444444321 13799999999999999999999988544
No 352
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.22 E-value=0.24 Score=36.46 Aligned_cols=122 Identities=21% Similarity=0.200 Sum_probs=65.3
Q ss_pred EEECCeEEEEEEEeCCCCccccc--------c---CcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNR--------L---RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVP 94 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~p 94 (179)
..+++ ..+.++||||--.... + ......+.|++++|..+... +-.+. ..++.+.+..+ -..
T Consensus 44 ~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~~--~~l~~l~~~FG~~~~k~ 118 (212)
T PF04548_consen 44 GEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEEDR--EVLELLQEIFGEEIWKH 118 (212)
T ss_dssp EEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHHH--HHHHHHHHHHCGGGGGG
T ss_pred eeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHHH--HHHHHHHHHccHHHHhH
Confidence 35677 5688999999422111 0 01134679999999999833 32222 33334433332 235
Q ss_pred EEEEEeCCCcccccccccCCCCCcccc---HHHHHHHHHHhCCCeEEEeccC------CCCcHHHHHHHHHHHHhCC
Q 030337 95 IILVGTKLDLRDDKQFFIDHPGAVPIT---TAQGEELRKLIGSPAYIECSSK------TQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 95 iilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~Sa~------~~~~i~~~f~~l~~~i~~~ 162 (179)
++||.+..|...... ....+. ......+.+..+- .|+..+.+ ....+.+++..+-..+.++
T Consensus 119 ~ivvfT~~d~~~~~~------~~~~l~~~~~~~l~~li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 119 TIVVFTHADELEDDS------LEDYLKKESNEALQELIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEEEEEEGGGGTTTT------HHHHHHHHHHHHHHHHHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhhcccccccc------HHHHHhccCchhHhHHhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 888888888765331 000011 1234566777776 67776655 2346777777766655443
No 353
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.14 E-value=0.31 Score=39.33 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=56.0
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCe
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 136 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (179)
+-.+|++|=|.|+-||-.-. + .+.-..+++..+...+++|.||+|+.+.+ +.......+.+.+-. -
T Consensus 211 iDSSDVvvqVlDARDPmGTr-c-~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i 276 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTR-C-KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I 276 (572)
T ss_pred hcccceeEEeeeccCCcccc-c-HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence 55789999999999986332 1 34445666677788999999999997644 666666777777654 2
Q ss_pred EEEeccCCCCcHHHHHH
Q 030337 137 YIECSSKTQQNVKAVFD 153 (179)
Q Consensus 137 ~~e~Sa~~~~~i~~~f~ 153 (179)
-+..|..+..|-..+.+
T Consensus 277 AfHAsi~nsfGKgalI~ 293 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQ 293 (572)
T ss_pred eeehhhcCccchhHHHH
Confidence 34456555555443333
No 354
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=93.97 E-value=0.24 Score=39.76 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=54.9
Q ss_pred EEEEEeCCCCccccccC-----cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc--cccc
Q 030337 37 NLGLWDTAGQEDYNRLR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQ 109 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~--~~~~ 109 (179)
.+.+||.||......-. ..-+..-|.+|++.+ ..|......+...++++ ..|+.+|-+|.|.. ++..
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~ 160 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR 160 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc
Confidence 48899999964322111 123567888888766 23333323556677777 78999999999972 2211
Q ss_pred cccCCCCCccccH----HHHHHHHHH----hCC--CeEEEeccCCC--CcHHHHHHHHHHHHh
Q 030337 110 FFIDHPGAVPITT----AQGEELRKL----IGS--PAYIECSSKTQ--QNVKAVFDAAIKVVL 160 (179)
Q Consensus 110 ~~~~~~~~~~~~~----~~~~~~~~~----~~~--~~~~e~Sa~~~--~~i~~~f~~l~~~i~ 160 (179)
...+..+. ++.++-+.. .|. +.++-+|+.+- .+...+.+.|.+.+-
T Consensus 161 -----~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 161 -----RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp -----C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred -----cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11112222 222222222 232 46788888874 567777777776553
No 355
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.18 Score=38.16 Aligned_cols=47 Identities=19% Similarity=0.476 Sum_probs=34.9
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCccc
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRD 106 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~D~~~ 106 (179)
.....++++|||++....+..+ ..|+.--.-. +. -.+.+|||.|..+
T Consensus 76 a~pl~a~vmvfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvp 123 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVP 123 (418)
T ss_pred ccceeeEEEEEeccchhhhHHH-Hhhccccccc--cchhheeccccccccc
Confidence 4456799999999999999988 7887633222 22 3568899999865
No 356
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=93.48 E-value=0.14 Score=41.24 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV---AKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~---~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
.-++.|.|++|+..|-+..-.-..+||..++|.++-..+ .|+.= ..+ ..+.+...-...|++.||+|-+..+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh--a~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH--AMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH--HHHHHhhccceEEEEEEeccCCccC
Confidence 357999999999998876666677888888887763221 22110 011 1122222345688999999986422
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCcHHHHH
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f 152 (179)
= +.+......+....+....|. ..|+.+|..+|.++.+--
T Consensus 234 W----s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 W----SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred c----chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 0 011111222334445554333 358899999999987654
No 357
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=93.41 E-value=0.022 Score=43.56 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=61.9
Q ss_pred EEEEEeCCC----------CccccccCcccccCcc---EEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 37 NLGLWDTAG----------QEDYNRLRPLSYRGAD---VFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 37 ~~~i~D~~G----------~~~~~~~~~~~~~~~~---~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
...+.|.+| .+.+..+...|+.+.+ -++++.|++.+..-.+. ...|+. + .++|+.+|.||+
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---e--~~VP~t~vfTK~ 258 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---E--NNVPMTSVFTKC 258 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---h--cCCCeEEeeehh
Confidence 567789998 2344455556665544 45556666654322222 123432 2 379999999999
Q ss_pred CcccccccccCCCCCccccHHHH--HHH---HHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQG--EEL---RKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
|....-. +-.+++.....+ ..+ +-... .+++-+|+.++.|++++...+..
T Consensus 259 DK~k~~~----~~~kKp~~~i~~~f~~l~~~~f~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 259 DKQKKVK----RTGKKPGLNIKINFQGLIRGVFLVD-LPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhcc----ccccCccccceeehhhccccceecc-CCceeeecccccCceeeeeehhh
Confidence 9975431 012222221111 111 11111 35778999999999988765543
No 358
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.29 E-value=0.35 Score=33.02 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=45.1
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|+|+++.. .......+..+|.++++.+.+ +.++... ...++.+.......++.+|.|+.+..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 668899998753 223345788999999999976 5555554 34455554433456788999999753
No 359
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=93.09 E-value=0.14 Score=42.59 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
++...-+++.|.||+-+|.+.....++-.|+.++|+|..+.-..+.- ..+...+.+ .+.-+++.||.|..
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence 34567899999999999999999999999999999999887544322 122222322 34556778999984
No 360
>PTZ00258 GTP-binding protein; Provisional
Probab=92.81 E-value=1.2 Score=36.04 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCccccc----cC---cccccCccEEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYNR----LR---PLSYRGADVFILAFSLI 70 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~----~~---~~~~~~~~~~i~v~d~~ 70 (179)
.++++.||||...-.+ +. ...++++|++++|+|..
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3589999999543211 11 22467899999999973
No 361
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=92.62 E-value=0.26 Score=37.76 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=52.4
Q ss_pred cCccEEEEEEeCCChh-------hHHHHHHHH---HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHH
Q 030337 58 RGADVFILAFSLISKA-------SYENVAKKW---IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 126 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~-------s~~~~~~~~---~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
...+|+|+++|+.+.- .+......+ +..+.... -.+||.||.||+|+...=. .....-...
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~--------ef~~~L~~~ 95 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFD--------EFFSDLSEE 95 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHH--------HHHHhCCHH
Confidence 3479999999988532 223332333 33333333 4899999999999964211 001111123
Q ss_pred HHHHHhCCCeEEEeccCCCCc---HHHHHHHHHHHHhC
Q 030337 127 ELRKLIGSPAYIECSSKTQQN---VKAVFDAAIKVVLQ 161 (179)
Q Consensus 127 ~~~~~~~~~~~~e~Sa~~~~~---i~~~f~~l~~~i~~ 161 (179)
...+.+|. .+-......+.. +.+.|+.++..+..
T Consensus 96 ~r~q~lG~-t~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 132 (266)
T PF14331_consen 96 EREQVLGF-TFPYDEDADGDAWAWFDEEFDELVARLNA 132 (266)
T ss_pred HHhCCccc-ccCCccccccchHHHHHHHHHHHHHHHHH
Confidence 33455665 222222333444 78888888776654
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.75 Score=39.56 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEEeCCCCcc---ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 37 NLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 37 ~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+.+.|.||..- ..+-...+..++|++|+|....+.-+.... +++....+- .+.|.++.||+|...+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCcEEEEechhhhhcc
Confidence 467889999642 333345678899999999998887766654 555555443 4568899999998653
No 363
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.52 E-value=1.5 Score=33.56 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=54.6
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+.|.|++.---= -.-..+.++|.+|+|--.| |..++++ ...++..+.. ++|..+|.||.++-
T Consensus 164 ~~~~IIDsaaG~gC--pVi~sl~~aD~ai~VTEPT-p~glhD~-kr~~el~~~f--~ip~~iViNr~~~g---------- 227 (284)
T COG1149 164 ADLLIIDSAAGTGC--PVIASLKGADLAILVTEPT-PFGLHDL-KRALELVEHF--GIPTGIVINRYNLG---------- 227 (284)
T ss_pred cceeEEecCCCCCC--hHHHhhccCCEEEEEecCC-ccchhHH-HHHHHHHHHh--CCceEEEEecCCCC----------
Confidence 35667776532110 0123578999999998776 6677888 6777777777 89999999999652
Q ss_pred CCccccHHHHHHHHHHhCCC
Q 030337 116 GAVPITTAQGEELRKLIGSP 135 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~ 135 (179)
.+ +.++++.+.+++
T Consensus 228 ----~s--~ie~~~~e~gi~ 241 (284)
T COG1149 228 ----DS--EIEEYCEEEGIP 241 (284)
T ss_pred ----ch--HHHHHHHHcCCC
Confidence 22 678888888874
No 364
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=91.24 E-value=3.3 Score=32.02 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=42.2
Q ss_pred EEEECCeEEEEEEEeCCCCcc------------------cc--------ccC-cccccCccEEEEEEeCCChh-hHHHHH
Q 030337 28 NVVVDGSTVNLGLWDTAGQED------------------YN--------RLR-PLSYRGADVFILAFSLISKA-SYENVA 79 (179)
Q Consensus 28 ~~~~~~~~~~~~i~D~~G~~~------------------~~--------~~~-~~~~~~~~~~i~v~d~~~~~-s~~~~~ 79 (179)
.+.-++..+.+.|+||||-.. |. ..+ ...=..+|+|+|..+.+... +-.++
T Consensus 55 ~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di- 133 (281)
T PF00735_consen 55 ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI- 133 (281)
T ss_dssp EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-
T ss_pred EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-
Confidence 344467889999999999211 00 000 01113589999999987532 22233
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..++.+.+ .+++|=|..|+|...
T Consensus 134 -~~mk~Ls~---~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 134 -EFMKRLSK---RVNVIPVIAKADTLT 156 (281)
T ss_dssp -HHHHHHTT---TSEEEEEESTGGGS-
T ss_pred -HHHHHhcc---cccEEeEEecccccC
Confidence 44445544 578888999999954
No 365
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=0.73 Score=35.20 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=25.6
Q ss_pred EEEEEEEeCCCCccccccCccc--ccCc--cEEEEEEeCCChhhH
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLS--YRGA--DVFILAFSLISKASY 75 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~--~~~~--~~~i~v~d~~~~~s~ 75 (179)
+=..++|+.+|-.....+..-- .++. =.+|++.|++++..+
T Consensus 91 kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 91 KDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPNDL 135 (363)
T ss_pred hhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHHH
Confidence 3357899999865543333222 2222 267899999998644
No 366
>PHA02518 ParA-like protein; Provisional
Probab=88.75 E-value=1.8 Score=31.26 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=41.1
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVP-IILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~ 104 (179)
.+.+.|+|++|.. .......+..+|.+|++...+... +...+ ..++..+....+..| ..++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDL-VELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccCC
Confidence 4678999999973 334456778899999998876332 33333 234444433333444 4567777654
No 367
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=88.06 E-value=5.5 Score=33.74 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEecc--CCCCcHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS--KTQQNVKAV 151 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa--~~~~~i~~~ 151 (179)
.+.++ .+-++.++++ .+|++|+.||.|...+ ...+..+++|+..|+ ++..+.. +-|.|-.++
T Consensus 357 Gl~NL-~RHIenvr~F--GvPvVVAINKFd~DTe------------~Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~L 420 (557)
T PRK13505 357 GFANL-ERHIENIRKF--GVPVVVAINKFVTDTD------------AEIAALKELCEELGV-EVALSEVWAKGGEGGVEL 420 (557)
T ss_pred HHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHcCC-CEEEecccccCCcchHHH
Confidence 34555 4556667666 8999999999998542 345678899999998 5654332 335677777
Q ss_pred HHHHHHHHh
Q 030337 152 FDAAIKVVL 160 (179)
Q Consensus 152 f~~l~~~i~ 160 (179)
-+.+++.+.
T Consensus 421 A~aVveA~~ 429 (557)
T PRK13505 421 AEKVVELIE 429 (557)
T ss_pred HHHHHHHHh
Confidence 777766554
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.72 E-value=2.5 Score=32.49 Aligned_cols=94 Identities=14% Similarity=0.055 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCCccccccCc------------ccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 35 TVNLGLWDTAGQEDYNRLRP------------LSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
.+.+-|.||+|........- ..-..++..++|.|++-.. .+..+ ..+. +.. -+--++.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~----~~~--~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFN----EAV--GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHH----hhC--CCCEEEEEc
Confidence 36788999999764322110 1112488999999997432 33322 2222 211 234678899
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.|..... -.+..++...+. ++..++ +|++++++-
T Consensus 227 lDe~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 9985432 345566666777 677766 787776543
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=87.53 E-value=4.7 Score=30.43 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=40.6
Q ss_pred EEEEEeC-CCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 37 NLGLWDT-AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 37 ~~~i~D~-~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+-|.|| +|.|.|. +...+++|.+|+|.|.+. .|+..+ ....+...+. .=.++.+|.||.|-
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL-GIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh-CCceEEEEEeeccc
Confidence 4567776 4666654 467889999999999773 344333 3333333333 12689999999996
No 370
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=87.42 E-value=5.3 Score=30.73 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=31.1
Q ss_pred EEEEEEeCCCCcccc----ccC---cccccCccEEEEEEeCCChhhHHHHH
Q 030337 36 VNLGLWDTAGQEDYN----RLR---PLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~----~~~---~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
-++++.|.||.-.-. ... -...+.|+.+++|.|+-.|-+-..+.
T Consensus 106 aKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 106 AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred cceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHH
Confidence 579999999853321 111 23467899999999999887766553
No 371
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=85.67 E-value=12 Score=30.00 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=48.4
Q ss_pred cCceeecee-eEEEECCeEEEEEEEeCCCCcc------------------c--------cccCcccc--cCccEEEEEEe
Q 030337 18 VPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED------------------Y--------NRLRPLSY--RGADVFILAFS 68 (179)
Q Consensus 18 ~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~------------------~--------~~~~~~~~--~~~~~~i~v~d 68 (179)
.||+..... ..+.-++..+.+.+.||||=-+ + ...+...+ ..+|+|+|...
T Consensus 63 ~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~ 142 (373)
T COG5019 63 SPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIR 142 (373)
T ss_pred CcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEec
Confidence 344442222 3344467889999999999211 1 00111112 24899999998
Q ss_pred CCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 69 LISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 69 ~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+... +--++ ..++.+.+. +.+|=|..|+|....
T Consensus 143 Ptgh~l~~~DI--e~Mk~ls~~---vNlIPVI~KaD~lT~ 177 (373)
T COG5019 143 PTGHGLKPLDI--EAMKRLSKR---VNLIPVIAKADTLTD 177 (373)
T ss_pred CCCCCCCHHHH--HHHHHHhcc---cCeeeeeeccccCCH
Confidence 77433 33333 455566554 445555699998653
No 372
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=85.35 E-value=13 Score=32.62 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred ECCeEEEEEEEeCCCCccccc-------c---Cccccc--CccEEEEEEeCCChhhH-HHHHHHHHHHHhhcCC---CCc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNR-------L---RPLSYR--GADVFILAFSLISKASY-ENVAKKWIPELRHYAP---GVP 94 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~-------~---~~~~~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~~i~~~~~---~~p 94 (179)
.++ ..+.++||||-..... + ...++. .+|++++|..++..... ++ ..+++.+++.++ -.-
T Consensus 163 idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~ 238 (763)
T TIGR00993 163 VQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFN 238 (763)
T ss_pred ECC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcC
Confidence 455 5689999999754321 0 111233 58999999988644332 32 255666666553 256
Q ss_pred EEEEEeCCCccc
Q 030337 95 IILVGTKLDLRD 106 (179)
Q Consensus 95 iilv~nK~D~~~ 106 (179)
+|||.|..|..+
T Consensus 239 tIVVFThgD~lp 250 (763)
T TIGR00993 239 AIVTLTHAASAP 250 (763)
T ss_pred EEEEEeCCccCC
Confidence 899999999875
No 373
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=84.92 E-value=3.3 Score=26.76 Aligned_cols=61 Identities=21% Similarity=0.123 Sum_probs=40.7
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEEeC
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTK 101 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilv~nK 101 (179)
.+.|.|+++.... .....+..+|.++++.+.+ +.+...+ ..+.+.+++.. + ...+.+|.|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 5789999986432 2234678899999988755 5566666 56666666554 2 3567677775
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=84.85 E-value=8.3 Score=30.68 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred EEEEEEeCCCCccccccC----ccc--ccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
+.+-|.||+|........ ... .-+.+..++|.|++... ..+.+ ..|. +.. -+--++.||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-~~f~----~~~--~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-REFN----EAV--GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-HHHH----hcC--CCCEEEEeeecCCCCc
Confidence 458899999976432211 111 23578889999987543 22222 2222 111 2345678999986432
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH----HHHHHHHh
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF----DAAIKVVL 160 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f----~~l~~~i~ 160 (179)
-.+..++...+. ++..++ +|++++++. +++++.++
T Consensus 296 --------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~~~~~~~~v~~ll 334 (336)
T PRK14974 296 --------------GAALSIAYVIGK-PILFLG--VGQGYDDLIPFDPDWFVDKLL 334 (336)
T ss_pred --------------cHHHHHHHHHCc-CEEEEe--CCCChhhcccCCHHHHHHHHh
Confidence 244555566677 676666 788887665 33444443
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.80 E-value=4.9 Score=31.65 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=58.7
Q ss_pred EEEEEEEeCCCCcccccc--------C---cc-cccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 35 TVNLGLWDTAGQEDYNRL--------R---PL-SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~--------~---~~-~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
.+.+-|.||+|....... . .. .-...+..++|.|++... .+..+ ..+. +. -.+--++.||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~----~~--~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFH----EA--VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHH----hh--CCCCEEEEEC
Confidence 367889999997542221 0 01 113467788999988432 33332 2222 11 1244678899
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH----HHHHHHHh
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF----DAAIKVVL 160 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f----~~l~~~i~ 160 (179)
.|....- -.+..++...+. ++..++ +|++++.+- +.+++.++
T Consensus 269 lD~t~~~--------------G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~~~~~~~~~~~ll 314 (318)
T PRK10416 269 LDGTAKG--------------GVVFAIADELGI-PIKFIG--VGEGIDDLQPFDAEEFVDALL 314 (318)
T ss_pred CCCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCChhhCccCCHHHHHHHHh
Confidence 9964322 245566677788 677776 788876553 33444444
No 376
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=81.83 E-value=13 Score=25.91 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=42.0
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+.|+|+++.... .....+..+|.+|++.+.+. .++..+ ..+++.++.. ....+.+|.|+.+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~~~~~-~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDA-DRVKGLLEAL-GIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHH-HHHHHHHHHc-CCceEEEEEeCCccc
Confidence 5889999986432 22345678999999988663 455555 4555555543 223467899999864
No 377
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=81.53 E-value=4.3 Score=32.55 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~ 106 (179)
.+.+.++|.| +. .......++.++|-+++|.+.+ -.+.... .+++..+++.. +..+..+|.||.+...
T Consensus 217 ~~~~vV~Dlp-~~-~~~~t~~vL~~Sd~iviv~e~s-l~slR~a-k~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 217 SFDFVVVDLP-NI-WTDWTRQVLSGSDEIVIVAEPS-LASLRNA-KELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred cCCeEEEcCC-Cc-cchHHHHHHhcCCeEEEEeccc-HHHHHHH-HHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 4678899999 33 3334467899999999999966 5567766 78888888887 5788889999998754
No 378
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=80.54 E-value=4.1 Score=32.31 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred EEEEEeCCCC---------ccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC----CcEEEEEeCC
Q 030337 37 NLGLWDTAGQ---------EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PG----VPIILVGTKL 102 (179)
Q Consensus 37 ~~~i~D~~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~----~piilv~nK~ 102 (179)
.+-+.||-|= +.|... ...+..+|.++=|.|++.|..-+.. ..-+.-++... ++ ..++=|-||.
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 4667788882 122221 1236789999999999999865554 33444444432 22 3356678888
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|..... +..+ .+ ..+-+||++|+|.+++...+-.....
T Consensus 305 D~e~~~-----------~e~E-------~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 305 DYEEDE-----------VEEE-------KN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccc-----------Cccc-------cC---CccccccccCccHHHHHHHHHHHhhh
Confidence 875432 1111 11 14568999999999999887766554
No 379
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.57 E-value=14 Score=27.33 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=42.3
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+-|.|+++.. .......+..+|.++++...+ ..++..+.......+.......++-+|.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 68899999852 233446678899999999875 4555555213333333222345677899998864
No 380
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=79.32 E-value=5.2 Score=34.08 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=44.0
Q ss_pred EEEEEeCCCCcc-------------ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 37 NLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 37 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
++-+.|.||.-. .-.+...|+.|.+++|+|..--+-+.-...-..+...+... ...-|+|.+|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence 567889998421 22345678999999999976443332222212333333322 567899999999
Q ss_pred ccccc
Q 030337 104 LRDDK 108 (179)
Q Consensus 104 ~~~~~ 108 (179)
+.+++
T Consensus 491 lAEkn 495 (980)
T KOG0447|consen 491 LAEKN 495 (980)
T ss_pred hhhhc
Confidence 98765
No 381
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=77.28 E-value=1.8 Score=31.04 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=36.6
Q ss_pred EeCCCCccccccCcccccCccEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 030337 41 WDTAGQEDYNRLRPLSYRGADVFILAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVG 99 (179)
Q Consensus 41 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilv~ 99 (179)
.-.+|.-...+....++...++-+++.|.. +++.|......++..+++..|++||+++-
T Consensus 39 LGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 39 LGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp EE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred eeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 346777666665555665555555555543 56677766688899999998999999986
No 382
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=76.21 E-value=23 Score=24.64 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCCccccccCcccc--cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCcccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFF 111 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~ 111 (179)
.+.+-|.|+|+.-. ....... ..+|.+++|...+ +.+...+ ..+++.+++. +.++ -+|.|+.+...+..
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~-~~~~~~l~~~--~~~~~gvv~N~~~~~~~~~-- 138 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDV-RKAIDMFKKV--NIPILGVVENMSYFVCPHC-- 138 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHH-HHHHHHHHhc--CCCeEEEEEcCCcccCCCC--
Confidence 46788999998632 1111122 5789999998766 5666666 5667777665 4444 47899988642110
Q ss_pred cCCCCCccccHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~ 134 (179)
............+.+++.++.
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 139 --GKKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred --CCcccccCCccHHHHHHHcCC
Confidence 000001122355677777666
No 383
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=75.30 E-value=31 Score=25.55 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=40.7
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~ 105 (179)
.+.+.|+|+++.... .....+..+|.++++.+.+ ..++.++ .......... +.+ +.++.|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~-~~s~~~~-~~~~~~~~~~--~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPE-ISSITDA-LKTKIVAEKL--GTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCC-CchHHHH-HHHHHHHHhc--CCceEEEEEECCCch
Confidence 467889999986432 2234466799999999875 4455544 2333333322 344 56899998763
No 384
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=73.88 E-value=8.2 Score=33.10 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=57.8
Q ss_pred CeeeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 1 MRFIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 1 ~~~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
||||++||.....++-.-|-. .+.++.-++++.+.+. ....+. ...+-||.++++.|..=.-..+. -
T Consensus 86 irSlVrr~tk~ti~~i~GPiT--------vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdgnfGfEMET--m 152 (1077)
T COG5192 86 IRSLVRRFTKQTIDEIRGPIT--------VVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDGNFGFEMET--M 152 (1077)
T ss_pred HHHHHHHHHHhhhhccCCceE--------EeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEeccccCceehH--H
Confidence 578888887766654444432 1356677888888773 222222 34566899999998763222222 2
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
+|+..+..+ +-+.|+-|++..|+....
T Consensus 153 EFLnil~~H-GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 153 EFLNILISH-GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred HHHHHHhhc-CCCceEEEEeecccccCh
Confidence 445454443 334588999999997644
No 385
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=73.66 E-value=13 Score=24.51 Aligned_cols=40 Identities=10% Similarity=0.368 Sum_probs=27.1
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+..++|+-|| ....+.. ..++..++....++||++++++.
T Consensus 38 ~i~avvi~~d---~~~~~~~-~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWD---GEEEDEA-QELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECH---HHHHHHH-HHHHHHHHHHSTT-EEEEEESCC
T ss_pred CeeEEEEEcc---cccchhH-HHHHHHHHHhCCCCCEEEEecCC
Confidence 3445555555 4444444 67888888888899999998865
No 386
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=73.65 E-value=7.8 Score=27.42 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~D~~~ 106 (179)
+.+.|.|+++.-... ....+..+|.+|++.+.+. .+...+ ..+.+.++...... .+-+|.|+.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~-~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGA-ERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHH-HHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHH-HHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 668899998864432 3456778999999999774 557666 67777777664223 4678999998754
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.03 E-value=12 Score=30.82 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCccccccC----cc--cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.+-|.||+|.......+ .. ...+.+-+++|.|++-...-.+. ...+.+. -.+--++.||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence 4678899999965432211 11 12357789999998743222211 1222221 134567889999854
No 388
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=72.47 E-value=6.6 Score=27.35 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=35.6
Q ss_pred EEEEEEeCCCCccccccCc--------ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRP--------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
....+.||+|...-..... ...-.+++++.++|.......-.-...+.+++.. . =+++.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a-d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A-DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C-CEEEEecccC
Confidence 4567889999643222111 1233588999999976443221111334444442 2 3457899996
No 389
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=72.13 E-value=10 Score=25.37 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=45.3
Q ss_pred CcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 93 VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 93 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
--|+|+|-|.+-.+-.. ..++-..-.+...++.+++|+ ..++.+||..+..+.+.++.+++.+.+
T Consensus 55 DGV~v~GC~~geCHy~~----GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 55 DGVLVAGCKIGECHYIS----GNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred CeEEEecccccceeeec----cchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 35899999998876432 001111223455667777766 458899999999999999999998864
No 390
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=70.98 E-value=12 Score=27.08 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=41.1
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~ 106 (179)
.+.+.|.|+|..... .......+.+|.+|+|.+.. ..+...+ ....+.+++. +.+ +-+|.||.|...
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~-~~~~~~l~~~--~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDV-QKAKEQLEQT--GSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHH-HHHHHHHHhC--CCCEEEEEEeCccccc
Confidence 356789999863211 11123456799999999975 3445555 4555556554 344 448889998753
No 391
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=68.27 E-value=25 Score=26.59 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=40.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEE-EEEeCCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPII-LVGTKLD 103 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D 103 (179)
.+.+.|.|++|.-.... ....+.-+|.+|++... ++.++..+ ......++.. ..+.++. ++.|+.+
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~-~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAA-NRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHH-HHHHHHHHhhhhccCCCceEEEEeccC
Confidence 47789999987533222 22346679999998865 45556555 3444444322 2356654 7889876
No 392
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=68.13 E-value=16 Score=25.15 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
.+.+-|.||+|..... ..++..+|-++++...+--+.+.-++ + ..+ ..-=+++.||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK--A-GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh--h-hHh-----hhcCEEEEeCCC
Confidence 4678899999965322 34888999999998877333332221 0 111 233467789987
No 393
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=68.11 E-value=15 Score=28.99 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=32.1
Q ss_pred ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 55 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 55 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.-++..|.+|=|=|+-=|=|-.+. .+++..+..|-|||.||+|+.+
T Consensus 42 ~~l~~~D~iiEvrDaRiPLssrn~------~~~~~~~~k~riiVlNK~DLad 87 (335)
T KOG2485|consen 42 NRLPLVDCIIEVRDARIPLSSRNE------LFQDFLPPKPRIIVLNKMDLAD 87 (335)
T ss_pred hhcccccEEEEeeccccCCccccH------HHHHhcCCCceEEEEecccccC
Confidence 456789999999998766443322 2223333688999999999976
No 394
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=67.54 E-value=9.5 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=17.3
Q ss_pred EEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 030337 98 VGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143 (179)
Q Consensus 98 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 143 (179)
++||+|++. ..+...++.+.+.-..++.+||.
T Consensus 1 AaNK~D~~~--------------a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA--------------ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S---------------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc--------------cHhHHHHHHHhCCCCceeeccHH
Confidence 589999843 33455556565554467777765
No 395
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=67.07 E-value=11 Score=35.33 Aligned_cols=69 Identities=25% Similarity=0.188 Sum_probs=43.1
Q ss_pred EEEEeCCCCcc--------ccccCcccc---------cCccEEEEEEeCCChhh-----HHHH---HHHHHHHHhhcC-C
Q 030337 38 LGLWDTAGQED--------YNRLRPLSY---------RGADVFILAFSLISKAS-----YENV---AKKWIPELRHYA-P 91 (179)
Q Consensus 38 ~~i~D~~G~~~--------~~~~~~~~~---------~~~~~~i~v~d~~~~~s-----~~~~---~~~~~~~i~~~~-~ 91 (179)
--++||+|.-- ....|..++ +..+|+|+++|+.+.-+ .... ...-+.++.... -
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34899999421 122344432 45999999999986531 1111 123344454444 4
Q ss_pred CCcEEEEEeCCCccc
Q 030337 92 GVPIILVGTKLDLRD 106 (179)
Q Consensus 92 ~~piilv~nK~D~~~ 106 (179)
..||.||.||+|+..
T Consensus 243 ~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 243 RFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCEEEEEecchhhc
Confidence 899999999999863
No 396
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=66.57 E-value=29 Score=25.81 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=43.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+.+.|.|+|+.... .....+..+|.+|++...+ ..++..+ ..+++.+.... ..++.++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDA-DRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHH-HHHHHHHHHcC-CCceEEEEeCcCc
Confidence 367889999886432 2234567899999988865 5566666 55666665543 2367788899875
No 397
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=70 Score=25.86 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=44.1
Q ss_pred EEECCeEEEEEEEeCCCCcc-------c------------------cccCccccc--CccEEEEEEeCCChh-hHHHHHH
Q 030337 29 VVVDGSTVNLGLWDTAGQED-------Y------------------NRLRPLSYR--GADVFILAFSLISKA-SYENVAK 80 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~-------~------------------~~~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~ 80 (179)
+.-+|-.+++++.||||--+ + ..+.+.-+. .+|+|+|....+..- .--++
T Consensus 72 iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-- 149 (366)
T KOG2655|consen 72 IEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-- 149 (366)
T ss_pred ecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--
Confidence 33467889999999999221 0 011112233 689999999876431 22222
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+++.+.. .+.+|=|..|+|....
T Consensus 150 ~~Mk~l~~---~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 150 EFMKKLSK---KVNLIPVIAKADTLTK 173 (366)
T ss_pred HHHHHHhc---cccccceeeccccCCH
Confidence 34444444 4666666799998643
No 398
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=65.25 E-value=26 Score=26.49 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEE-EEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPII-LVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D~ 104 (179)
.+.+.|.|++|...... ....+..+|.+|++...+ +.++..+ ....+.++.. ..+.++. +|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~-~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAA-NRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHH-HHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 46788999987643211 123477899999988764 4444444 3333333322 2355543 77899874
No 399
>CHL00175 minD septum-site determining protein; Validated
Probab=65.04 E-value=33 Score=26.18 Aligned_cols=65 Identities=11% Similarity=-0.074 Sum_probs=41.8
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+.+.|+|+|+.-. ......+..+|.+++|.+.+ +.+...+ ..+++.+.+.. ...+-+|.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~-~~~~~~l~~~~-~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDA-DRVAGLLEANG-IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHH-HHHHHHHHHcC-CCceEEEEeccCh
Confidence 46788999988642 22234456789888887754 5566666 45555565532 2345678899875
No 400
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=64.83 E-value=48 Score=23.59 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.++ ..|+..+++..+.-.++||-|-+-... + .....++.+.+.+|+ +++.-+++.--+..++...+
T Consensus 62 ~~~-~~~~~~l~~~~~~~~v~IvSNsaGs~~-d-----------~~~~~a~~~~~~lgI-pvl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 62 PEY-AEWLNELKKQFGKDRVLIVSNSAGSSD-D-----------PDGERAEALEKALGI-PVLRHRAKKPGCFREILKYF 127 (168)
T ss_pred HHH-HHHHHHHHHHCCCCeEEEEECCCCccc-C-----------ccHHHHHHHHHhhCC-cEEEeCCCCCccHHHHHHHH
Confidence 344 678888887755446999999764332 1 456788999999998 77777777776666666555
Q ss_pred H
Q 030337 156 I 156 (179)
Q Consensus 156 ~ 156 (179)
-
T Consensus 128 ~ 128 (168)
T PF09419_consen 128 K 128 (168)
T ss_pred h
Confidence 3
No 401
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.02 E-value=43 Score=27.77 Aligned_cols=83 Identities=17% Similarity=0.076 Sum_probs=46.4
Q ss_pred EEEEEeCCCCccccccC----c--ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCcccccc
Q 030337 37 NLGLWDTAGQEDYNRLR----P--LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQ 109 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~----~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~ 109 (179)
.+.|.||+|........ . ...-.++.+++|.|.+... +. ......+.+ ..++ -+|.||.|....-
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTAKG- 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCCcc-
Confidence 68899999976532210 0 1133678899999987642 22 122222222 2333 4677999974322
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 141 (179)
-.+..++...+. ++..++
T Consensus 249 -------------G~~ls~~~~~~~-Pi~fig 266 (437)
T PRK00771 249 -------------GGALSAVAETGA-PIKFIG 266 (437)
T ss_pred -------------cHHHHHHHHHCc-CEEEEe
Confidence 345666666676 454443
No 402
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=62.81 E-value=69 Score=26.72 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=52.2
Q ss_pred EEEEEEeCC----ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeE
Q 030337 62 VFILAFSLI----SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 137 (179)
Q Consensus 62 ~~i~v~d~~----~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (179)
|+++--|-+ .++.+..+..+-+..++.. +.|++++.|-.+-.. +...+-+.++.+.++. +.
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s------------~et~~L~~eL~ekY~v-pV 212 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYS------------EETQELAEELEEKYDV-PV 212 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCC------------HHHHHHHHHHHHHhCC-cE
Confidence 455544443 2456666656667777776 789999999887432 1455666778888888 67
Q ss_pred EEeccCC--CCcHHHHHHHHHH
Q 030337 138 IECSSKT--QQNVKAVFDAAIK 157 (179)
Q Consensus 138 ~e~Sa~~--~~~i~~~f~~l~~ 157 (179)
+.+++.+ ...|..+++.++.
T Consensus 213 lpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 213 LPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred EEeehHHcCHHHHHHHHHHHHh
Confidence 7665543 4566666665544
No 403
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=62.71 E-value=46 Score=26.38 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=51.2
Q ss_pred EEEEEEeCCCCcccccc-----Ccccc---cCccEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQEDYNRL-----RPLSY---RGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~-----~~~~~---~~~~~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
....+.++.|...-.+. +...+ -..+++|-|+|+..-..-.. ....+..++. ..=+||.||.|+..
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCCC
Confidence 44556778885432121 11112 24678999999876543322 2233344443 23577889999965
Q ss_pred ccccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCcHHHHH
Q 030337 107 DKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f 152 (179)
.. ..+..+...+.+ ...+++++|. .+....+++
T Consensus 160 ~~------------~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 160 AE------------ELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HH------------HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 32 123334444433 2346777766 333444333
No 404
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=62.64 E-value=22 Score=28.67 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=26.5
Q ss_pred eEEEEEEEeCCCCc----cccccCccc---ccCccEEEEEEeCC
Q 030337 34 STVNLGLWDTAGQE----DYNRLRPLS---YRGADVFILAFSLI 70 (179)
Q Consensus 34 ~~~~~~i~D~~G~~----~~~~~~~~~---~~~~~~~i~v~d~~ 70 (179)
....+++.|++|.- ...-+...| ++.+|+++-|+|..
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 34679999998843 333344444 67899999999987
No 405
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.24 E-value=46 Score=22.52 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=54.3
Q ss_pred EEEEeCCCCccccccCccc-ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCC
Q 030337 38 LGLWDTAGQEDYNRLRPLS-YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+.+.|.++...-....... =.+++++. .+..+..+.+.+ ....+.+++.. +++++++-|+..+-
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii~--iSsl~~~~~~~~-~~~~~~L~~~g~~~i~vivGG~~~~~----------- 96 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVVG--VSSLAGGHLTLV-PALRKELDKLGRPDILVVVGGVIPPQ----------- 96 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEE--EcCchhhhHHHH-HHHHHHHHhcCCCCCEEEEeCCCChH-----------
Confidence 6677766643222221121 23455444 455555666666 67777887765 35666665555421
Q ss_pred CCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
-....+..|...++.. |.++.++...+.+.+
T Consensus 97 ---------~~~~l~~~Gvd~~~~~----gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 97 ---------DFDELKEMGVAEIFGP----GTPIPESAIFLLKKL 127 (132)
T ss_pred ---------hHHHHHHCCCCEEECC----CCCHHHHHHHHHHHH
Confidence 1223667888656653 678888888877754
No 406
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=59.93 E-value=64 Score=23.41 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=49.3
Q ss_pred EEEEEEEeCCCCccccccCc-ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRP-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVP-IILVGTKLDLRDDKQF 110 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~p-iilv~nK~D~~~~~~~ 110 (179)
.+.+.|.|++|......+.. ...+-+|.++++...+ ..+...+ ....+.++... .+.+ .-++.|+.+..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~-~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----- 188 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAA-NNICKGIRKYAKSGGVRLGGLICNSRNTD----- 188 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHH-HHHHHHHHHhCcccCCcEEEEEEeCCCCc-----
Confidence 47788999977543222211 1124799999999764 5555554 34444444432 1344 44899999853
Q ss_pred ccCCCCCccccHHHHHHHHHHhCC
Q 030337 111 FIDHPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~ 134 (179)
...+...++.+.++.
T Consensus 189 ---------~~~~~~~~~~~~~~~ 203 (212)
T cd02117 189 ---------RETELIDAFAERLGT 203 (212)
T ss_pred ---------cHHHHHHHHHHHcCC
Confidence 223455677777775
No 407
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=58.56 E-value=6.5 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCccccc----cCc---ccccCccEEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYNR----LRP---LSYRGADVFILAFSLI 70 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~----~~~---~~~~~~~~~i~v~d~~ 70 (179)
..+++.|+||.-.-.+ +.. ..++++|+++.|+|..
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3599999999543211 111 2367899999999874
No 408
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=57.90 E-value=31 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 124 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 124 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+.....+..|. +++.+|++++.+++++.+.+-.
T Consensus 3 ~~~~~y~~~gy-~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKLGY-PVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHTTS-EEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCC-cEEEEeCCCCcCHHHHHHHhcC
Confidence 44566677888 8999999999999999887655
No 409
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.73 E-value=24 Score=23.00 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=26.5
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCC
Q 030337 64 ILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKL 102 (179)
Q Consensus 64 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~ 102 (179)
+++++.++...+..+ ..+.+.+++..+ ++++++.|.-.
T Consensus 53 vV~iS~~~~~~~~~~-~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 53 AIGLSGLLTTHMTLM-KEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred EEEEeccccccHHHH-HHHHHHHHHcCCCCCeEEEECCCC
Confidence 445555666677777 788888888766 67777777543
No 410
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=56.94 E-value=38 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=30.7
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHH
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIP 84 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 84 (179)
+.+.|.|+++...- .....+..+|.++++.+.+ ..++..+ ..+++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~-~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGL-EKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHH-HHHHH
Confidence 66889999986432 2235677899999999864 5566655 45544
No 411
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=55.17 E-value=21 Score=25.29 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=35.5
Q ss_pred EEEEEeCCCCcccccc--Cccc---ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 37 NLGLWDTAGQEDYNRL--RPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
...|.+++|...-..+ .... .-..+.+|.|+|..+-.........+.+++. ..=+++.||+|+.+
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-----~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-----FADVIVLNKIDLVS 155 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-----T-SEEEEE-GGGHH
T ss_pred CEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-----hcCEEEEeccccCC
Confidence 3455677775443333 0011 2246799999999765433333233444554 23467789999965
No 412
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=54.33 E-value=49 Score=21.99 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=31.9
Q ss_pred EEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeC
Q 030337 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTK 101 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK 101 (179)
+.|-|+-|... .....++|.++++=|+.+....... ..+.+.+.+.. ..+ +++.||-
T Consensus 3 ~~isD~H~~~~-----~~~~~~~D~vi~~GD~~~~~~~~~~-~~~~~~l~~~~-~~~~~~v~GNH 60 (135)
T cd07379 3 VCISDTHSRHR-----TISIPDGDVLIHAGDLTERGTLEEL-QKFLDWLKSLP-HPHKIVIAGNH 60 (135)
T ss_pred EEEeCCCCCCC-----cCcCCCCCEEEECCCCCCCCCHHHH-HHHHHHHHhCC-CCeEEEEECCC
Confidence 34557777644 1234679999999998876544333 23333333321 222 4567773
No 413
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=53.91 E-value=71 Score=24.07 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcE-EEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPI-ILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pi-ilv~nK~D~ 104 (179)
.+.+.|.||+|.-..... ...+.-+|.++++... +..++..+ ...++.+... ..++++ -+|.|+.+.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~-~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAA-NRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHH-HHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 478889999875322111 2346789988888654 44555555 3444444332 234554 477899875
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.85 E-value=73 Score=26.37 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCCccccccCcc------cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
.+.+-|.||+|........-. ..-+.+.+++|.|.+.. ++. ..+...+....+ .-=++.||.|-...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~-~~~a~~f~~~v~--i~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDA-VNTAKTFNERLG--LTGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHH-HHHHHHHHhhCC--CCEEEEeCccCccc-
Confidence 356889999996433221100 12357788999998744 233 223333332211 12366899996432
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 141 (179)
.-.+...+...+. ++..++
T Consensus 255 -------------~G~~lsi~~~~~~-PI~fi~ 273 (428)
T TIGR00959 255 -------------GGAALSVRSVTGK-PIKFIG 273 (428)
T ss_pred -------------ccHHHHHHHHHCc-CEEEEe
Confidence 2246777777787 555544
No 415
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=53.23 E-value=61 Score=21.11 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=32.4
Q ss_pred EEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEE
Q 030337 38 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 97 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 97 (179)
+.+||..|+-+-+.... ..+...-+|+++-..++.+-..+ ..+....++...+-.|+.
T Consensus 38 lTv~Da~GqW~~~~~g~-~~rE~Skvv~i~~~~~~~~~~~i-~~Ir~~Yk~rF~QeSV~~ 95 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGR-LIRERSKVVIIVHPDTPAAEARI-EAIREAYKQRFQQESVMR 95 (104)
T ss_pred ceEEeccceEecCCCCc-EeecccEEEEEEeCCChHHHHHH-HHHHHHHHHHhccceEEE
Confidence 88999999976544333 44444444444444556655555 555555555444334443
No 416
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=51.25 E-value=1.2e+02 Score=24.06 Aligned_cols=68 Identities=16% Similarity=-0.028 Sum_probs=32.6
Q ss_pred EEEEEEeCCCCccccccCccccc-CccEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCc-EEEEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENV--AKKWIPELRHYAPGVP-IILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~p-iilv~nK~D~ 104 (179)
+.+-|.|+.|...-..+...... -++.+ +|.-.-+..+.... ....+..+++...+.+ +-+|.||.|.
T Consensus 148 ~DyVliD~~gdv~~ggf~l~i~~~~ad~V-IVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 148 FDYVLLDFLGDVVCGGFGLPIARDMAQKV-IVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred CCEEEEecCCcceeccccchhhhcCCceE-EEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 45667777664321111111111 24444 44433445566432 1344555655433344 5589999985
No 417
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=50.93 E-value=24 Score=26.14 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCCCcccCceee--ceeeEEEECCe--EEEEEEEeCCCCccccc-cC----cccccC--ccEEEEEEeCCChhhHHHHH
Q 030337 11 SLGKQDYVPTVFD--NFSANVVVDGS--TVNLGLWDTAGQEDYNR-LR----PLSYRG--ADVFILAFSLISKASYENVA 79 (179)
Q Consensus 11 ~~f~~~~~pt~~~--~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~----~~~~~~--~~~~i~v~d~~~~~s~~~~~ 79 (179)
..|.++|+|.+|+ -|.|.-..++. ..-+.+.|-+......+ .. +...+. ...-+.|=.+.+.+.-....
T Consensus 39 kPFiPdyiPAVGdiDaFiKVpRPD~~~d~LGL~vLDEP~~~QSdp~vl~lqLr~~~~~~~~~~~~~v~sie~ae~n~k~I 118 (214)
T PF12317_consen 39 KPFIPDYIPAVGDIDAFIKVPRPDGKPDNLGLTVLDEPSANQSDPTVLDLQLRSISKQANGDKDVPVKSIENAEKNPKEI 118 (214)
T ss_pred cccCccccccccCcccceeccCCCCCccccCCEEecCCCcccCCCceEEEeeecccccccccccceecchhchhhCHHHH
Confidence 4799999999994 44444444553 35677788776433222 11 111222 22344555555555333334
Q ss_pred HHHHHHHhhcCC
Q 030337 80 KKWIPELRHYAP 91 (179)
Q Consensus 80 ~~~~~~i~~~~~ 91 (179)
+.|+..+.+...
T Consensus 119 d~WI~~i~elHr 130 (214)
T PF12317_consen 119 DKWIESIEELHR 130 (214)
T ss_pred HHHHHHHHHHHh
Confidence 899999988763
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=50.58 E-value=83 Score=21.85 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=36.0
Q ss_pred EEEEEEeCCCCcccccc----Cccc--ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..+.|.|++|...+... .... ....+.+++|.|.....+-- .+...+.+..+ ..-++.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~~--~~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEALG--ITGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhCC--CCEEEEECCcCCC
Confidence 45677999997432111 1111 23489999999987543221 22233322222 2446669999854
No 419
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=49.55 E-value=36 Score=23.02 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=28.2
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCcEEE
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIIL 97 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piil 97 (179)
.-|+-|+..-++...+-..+ ..|+..+++-.+ ++||++
T Consensus 83 q~dGti~Amc~tg~~~~~sL-~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSL-LSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHH-HHHHHHHHhhCCchhcceEEE
Confidence 35577777777776666666 799999998664 688775
No 420
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.81 E-value=60 Score=20.42 Aligned_cols=42 Identities=31% Similarity=0.475 Sum_probs=30.1
Q ss_pred ccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEE
Q 030337 51 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 98 (179)
Q Consensus 51 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 98 (179)
...+.-+..+|++|++.|..+-.....+ .. ..++. ++|++.+
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~v-k~---~akk~--~ip~~~~ 81 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKV-KK---AAKKY--GIPIIYS 81 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHH-HH---HHHHc--CCcEEEE
Confidence 3456788999999999999888777665 22 22333 6888866
No 421
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=48.55 E-value=1.5e+02 Score=25.32 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEec--cCCCCcHHHHHH
Q 030337 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS--SKTQQNVKAVFD 153 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~ 153 (179)
.++ ..-++.++++ .+|+|+..|+..-.. ....+..+++++..|. ....+. ++-|.|-.++-+
T Consensus 343 ~NL-~~Hi~n~~~f--g~p~VVaiN~F~~Dt------------~~Ei~~v~~~~~~~g~-~~~~~~~~~~GG~Ga~eLA~ 406 (524)
T cd00477 343 ANL-RKHIENIKKF--GVPVVVAINKFSTDT------------DAELALVRKLAEEAGA-FVAVSEHWAEGGKGAVELAE 406 (524)
T ss_pred HHH-HHHHHHHHHc--CCCeEEEecCCCCCC------------HHHHHHHHHHHHHcCC-CEEEehhhhhhhhhHHHHHH
Confidence 344 3445566655 799999999997533 2456678889999997 555543 333677888888
Q ss_pred HHHHHHh
Q 030337 154 AAIKVVL 160 (179)
Q Consensus 154 ~l~~~i~ 160 (179)
.+++.+-
T Consensus 407 ~Vi~a~e 413 (524)
T cd00477 407 AVIEACE 413 (524)
T ss_pred HHHHHhc
Confidence 8777554
No 422
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=47.86 E-value=95 Score=24.02 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=60.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEE-EEEeCCCcccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPII-LVGTKLDLRDDKQFF 111 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D~~~~~~~~ 111 (179)
.+.+.|.|++|.-....+ ...+..||.+|++.+. ++.++..+ ..+++.++.. .++.++. ++.|+.+....-...
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p-~~~sl~~~-~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~ 191 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDN-GFDALFAA-NRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKY 191 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecC-CHHHHHHH-HHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHH
Confidence 467889999775221111 1335679999998875 45566655 4444444432 2334443 788988732100000
Q ss_pred ---cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCc---HHHHHHHHHHHHhCC
Q 030337 112 ---IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN---VKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~---i~~~f~~l~~~i~~~ 162 (179)
...+--..+.......-+...+. ++++.+.. ..+ ....|..+.+.++..
T Consensus 192 ~~~~~~~vl~~Ip~~~~v~~A~~~g~-pv~~~~p~-s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 192 VEACPMPVLEVLPLIEDIRVSRVKGK-TLFEMVES-EPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred HHHcCCceEEECCCChHHHHHHhCCC-ceEEeCCC-CcchhHHHHHHHHHHHHHHhC
Confidence 00000001222233333444554 45555432 222 466677777776543
No 423
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=47.83 E-value=49 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=24.3
Q ss_pred EEEEEEeCCCCccccc----cC---cccccCccEEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYNR----LR---PLSYRGADVFILAFSLI 70 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~----~~---~~~~~~~~~~i~v~d~~ 70 (179)
..+++.|+||...-.+ +. -..++++|++++|+|..
T Consensus 66 a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 66 ATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3589999999643211 11 12467899999999984
No 424
>PRK10818 cell division inhibitor MinD; Provisional
Probab=47.25 E-value=1e+02 Score=23.26 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=42.2
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhc------C-CCCcEEEEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY------A-PGVPIILVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~------~-~~~piilv~nK~D~~ 105 (179)
.+.+.|.|+|+.-... ....+..+|.++++.+.+ ..++..+ ..+++.+... . .+.+..+|.|+.|..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~-~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhH-HHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 4778999998765322 233468899999998866 4455555 4455554321 1 123456788888753
No 425
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=46.82 E-value=43 Score=25.41 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEe
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGT 100 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~n 100 (179)
.+.+.|.|+|-.... .........+|++|+|.... ..+..++ ....+.+++. +.+++ +|.|
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~-~t~~~~~-~~~~~~l~~~--~~~~~G~VlN 273 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVN-ETRLHEL-TSLKEHLSGV--GVRVVGAVLN 273 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECC-CCCHHHH-HHHHHHHHhC--CCCEEEEEeC
Confidence 466889998865321 22233567899999988854 4555555 5556666654 45555 4444
No 426
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=46.65 E-value=50 Score=22.97 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=31.4
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
.-+++|.--..+.|.|+++- -+|+.+.=...+...++++|||-
T Consensus 83 ~y~vYivtaamdhp~s~~dK-~eWl~E~FPFi~~qn~vfCgnKn 125 (180)
T COG4502 83 IYNVYIVTAAMDHPKSCEDK-GEWLKEKFPFISYQNIVFCGNKN 125 (180)
T ss_pred hheEEEEEeccCCchhHHHH-HHHHHHHCCCCChhhEEEecCCC
Confidence 34566666666688999987 78877765555667799999985
No 427
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=46.38 E-value=30 Score=29.35 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=48.5
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-------
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK------- 130 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 130 (179)
++-.++..|.|.+|... ...+.+........+++++||.|+..... + ...-+......
T Consensus 109 ~~~~~~~~vvd~~d~p~------~i~p~~~~~v~~~~~~v~~n~vdl~p~d~--------~-~~~c~rc~~l~~~~~vk~ 173 (572)
T KOG1249|consen 109 ENPALARKVVDLSDEPC------SIDPLLTNDVGSPRLFVDGNKVDLLPKDS--------R-PGYCQRCHSLLHYGMIKA 173 (572)
T ss_pred hcccceEEeeecccCcc------ccccchhhcccCCceEeeccccccccccc--------c-chHHHHHHhhcccceeec
Confidence 34456677777776543 12233333333444799999999976542 0 00111111000
Q ss_pred --------HhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 131 --------LIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 131 --------~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
...+.....+++++|.|++++.-.+.+..
T Consensus 174 ~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 174 GGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred ccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 11122344689999999999988887753
No 428
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=45.46 E-value=47 Score=24.82 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=41.5
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHH----hhcCCCCcEEEEEeCCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL----RHYAPGVPIILVGTKLD 103 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i----~~~~~~~piilv~nK~D 103 (179)
.+.+.|.|++|... ......+..+|.+|+....+ +.++... ..++..+ +...++.|..++.|..+
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~-~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEA-LSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHH-HHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 47889999999753 33345677889998887764 3344333 2232222 22235688889999886
No 429
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=45.43 E-value=1.7e+02 Score=25.32 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEecc--CCCCcHHHHHHHHHHH
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS--KTQQNVKAVFDAAIKV 158 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa--~~~~~i~~~f~~l~~~ 158 (179)
.-++.++++ .+|+|+..|+..-.. ....+..+++++..+. ....+.. +-|.|-.++-+.+++.
T Consensus 392 ~Hi~n~~~f--g~pvVVaiN~F~~Dt------------~~Ei~~l~~~~~~~g~-~~~v~~~wa~GGeGa~eLA~~Vv~a 456 (587)
T PRK13507 392 HHIGTVKKS--GINPVVCINAFYTDT------------HAEIAIVRRLAEQAGA-RVAVSRHWEKGGEGALELADAVIDA 456 (587)
T ss_pred HHHHHHHHc--CCCeEEEeCCCCCCC------------HHHHHHHHHHHHHcCC-CEEEechhhccchhHHHHHHHHHHH
Confidence 334555555 799999999987533 2455677888888887 5544332 3357777877777765
Q ss_pred Hh
Q 030337 159 VL 160 (179)
Q Consensus 159 i~ 160 (179)
+-
T Consensus 457 ~e 458 (587)
T PRK13507 457 CN 458 (587)
T ss_pred hh
Confidence 54
No 430
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=44.95 E-value=44 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 133 GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 133 ~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.+.+.+..||+++.|++.+++.+...+
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 335678899999999999999998765
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=44.80 E-value=1.2e+02 Score=25.19 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCCcccccc-C---cc--cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRL-R---PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~-~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~ 107 (179)
.+.+-|.||+|....... . .. ..-..+.+++|.|.+.. +++ ......+.+. ++ -=+|.||.|-...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~a-v~~a~~F~~~---~~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDA-VNTAKAFNEA---LGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHH-HHHHHHHHhh---CCCCEEEEeCccCccc
Confidence 366889999996432211 0 00 11256778999998643 222 1222233222 22 2356699996432
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 141 (179)
. -.+.......+. ++..++
T Consensus 256 g--------------G~alsi~~~~~~-PI~fig 274 (433)
T PRK10867 256 G--------------GAALSIRAVTGK-PIKFIG 274 (433)
T ss_pred c--------------cHHHHHHHHHCc-CEEEEe
Confidence 2 236667777777 555544
No 432
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=43.99 E-value=72 Score=24.65 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHh--hcCCCCcEEEEEeCCCcccccccccCCCCC-ccccHHHHHHHHHHhCC
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLRDDKQFFIDHPGA-VPITTAQGEELRKLIGS 134 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 134 (179)
..++++|++.+.++.++.+....++.+..+ +...+--|+||..|.|....-... -+. -.+...++.++.++.=.
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevG---yGLEg~ltD~~a~~iIr~~i~ 138 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVG---YGLEGVLTDAQAGRIIRETIA 138 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEe---cCcccccChHHHHHHHHhhhC
Confidence 358899999999998888877666666633 222366799999999943211000 000 01455666666655443
Q ss_pred CeEEEeccCCCCcHHHHHHHHHHHHhCCchh
Q 030337 135 PAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 165 (179)
Q Consensus 135 ~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~~~ 165 (179)
+.+.--. -..++....+.+.+.+-..+..
T Consensus 139 -P~fr~gn-y~~gi~~~id~l~~~l~g~~~~ 167 (271)
T COG1512 139 -PAFRDGN-YAGGLEAGIDRLVALLAGEPLP 167 (271)
T ss_pred -cccccCc-HHHHHHHHHHHHHHHHcCCCCC
Confidence 2332111 2246777777777776554433
No 433
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.95 E-value=1.4e+02 Score=25.74 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCCccccccCc------ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
.+.+.|.||+|......... ..... ...++|.+.+. +..++ ...+..+.. -.+.-+|.||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~-- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG-- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc--
Confidence 36788999999643221100 01112 24566666553 33333 233333333 245668999999843
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
..-.+..+....+. ++..++ +|++|.
T Consensus 499 ------------~lG~aLsv~~~~~L-PI~yvt--~GQ~VP 524 (559)
T PRK12727 499 ------------RFGSALSVVVDHQM-PITWVT--DGQRVP 524 (559)
T ss_pred ------------chhHHHHHHHHhCC-CEEEEe--CCCCch
Confidence 33456667777777 555554 566663
No 434
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=41.79 E-value=1.3e+02 Score=24.29 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=38.7
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCccc
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP-IILVGTKLDLRD 106 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~p-iilv~nK~D~~~ 106 (179)
.++.|.+++.-|.-...+-+++...|++.+.... ..+| .+++||.-|...
T Consensus 98 sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ 149 (379)
T KOG1432|consen 98 SEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESD 149 (379)
T ss_pred ccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccccc
Confidence 5678999999998888877777677887777666 5788 567888877643
No 435
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=40.96 E-value=79 Score=23.96 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=33.7
Q ss_pred ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 030337 57 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 102 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~ 102 (179)
...+|-++..|..-+...-..+ ...++.+.++. +++||.+|-|=-
T Consensus 152 AA~adfVi~~YNP~s~~R~~~~-~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 152 AAEADFVIALYNPISKRRPEQL-GRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HhhCCEEEEEECCccccchHHH-HHHHHHHHHhcCCCCcEEEEecCC
Confidence 4568999999998887755555 45566777766 589999887655
No 436
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=40.74 E-value=34 Score=27.62 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCccc-ccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 030337 92 GVPIILVGTKLDLRD-DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 143 (179)
Q Consensus 92 ~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 143 (179)
..|+++|+|+.|..- ... .-.+...+++...+. .++.+||.
T Consensus 199 ~KP~i~v~N~~e~~~~~~~----------~~~~~i~~~~~~~~~-~~i~~sa~ 240 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGN----------PYVKKVREIAAKEGA-EVVVICAK 240 (364)
T ss_pred cCCeEEEEECCcccccccc----------HHHHHHHHHHHHcCC-eEEEEEHH
Confidence 389999999998521 111 233455556656665 67777764
No 437
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=40.74 E-value=1.7e+02 Score=22.59 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=43.1
Q ss_pred eEEEECCeEEEEEEEeCCCCc---cccccCcc-----------------------cc--cCccEEEEEEeCCChhhHHHH
Q 030337 27 ANVVVDGSTVNLGLWDTAGQE---DYNRLRPL-----------------------SY--RGADVFILAFSLISKASYENV 78 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~---~~~~~~~~-----------------------~~--~~~~~~i~v~d~~~~~s~~~~ 78 (179)
+.+.-++-..++.+.||||=- .-..-|.. .+ ..+|+|++....+-.+ +.-+
T Consensus 95 hvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-Lrpl 173 (336)
T KOG1547|consen 95 HVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPL 173 (336)
T ss_pred eeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcc
Confidence 444446778899999999921 11111211 12 2478888888877432 2222
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 79 AKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 79 ~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
..++++.+.+. +.|+=|.-|+|-.
T Consensus 174 DieflkrLt~v---vNvvPVIakaDtl 197 (336)
T KOG1547|consen 174 DIEFLKRLTEV---VNVVPVIAKADTL 197 (336)
T ss_pred cHHHHHHHhhh---heeeeeEeecccc
Confidence 23455555554 4466666899974
No 438
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.17 E-value=1.4e+02 Score=21.65 Aligned_cols=89 Identities=24% Similarity=0.120 Sum_probs=50.2
Q ss_pred EEEEEEeCCCCcccccc----Cccc--ccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
+.+.+.||+|....... ...+ .-..+-+++|.+++... ..+.+ ..+.+.+ +. ==++.+|.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~-~~~~~~~-----~~-~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA-LAFYEAF-----GI-DGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH-HHHHHHS-----ST-CEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH-HHHhhcc-----cC-ceEEEEeecCCC--
Confidence 55789999997543321 1111 12566788888887543 33333 2332222 11 235589999854
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcH
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 148 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 148 (179)
..-.+..++...+. +.-.+| +|++|
T Consensus 155 ------------~~G~~l~~~~~~~~-Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 ------------RLGALLSLAYESGL-PISYIT--TGQRV 179 (196)
T ss_dssp ------------TTHHHHHHHHHHTS-EEEEEE--SSSST
T ss_pred ------------CcccceeHHHHhCC-CeEEEE--CCCCh
Confidence 33456777778887 565554 56665
No 439
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=38.54 E-value=49 Score=20.60 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=26.1
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
..|++++=++..+....+- ++.++...+++|++++.+..|.
T Consensus 43 ~~d~iiid~~~~~~~~~~~-----~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 43 PPDLIIIDLELPDGDGLEL-----LEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp TESEEEEESSSSSSBHHHH-----HHHHHHHTTTSEEEEEESSTSH
T ss_pred CceEEEEEeeecccccccc-----ccccccccccccEEEecCCCCH
Confidence 3666666666666444443 3455555568999999876663
No 440
>PLN02759 Formate--tetrahydrofolate ligase
Probab=38.03 E-value=2.3e+02 Score=24.71 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=43.2
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEecc--CCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS--KTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa--~~~~~i~~~f~~l~~~i~ 160 (179)
++.++++ .+|+||..|+..-.. ....+..++++...|......+.. +-|.|-.++-+.+++.+-
T Consensus 443 i~n~~~f--g~pvVVaiN~F~~Dt------------~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 443 IENTKSY--GVNVVVAINMFATDT------------EAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHc--CCCeEEEecCCCCCC------------HHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 4444444 799999999997533 245667788999988424444333 336788888888777654
No 441
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=37.17 E-value=1.1e+02 Score=19.35 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=34.7
Q ss_pred ccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 51 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 51 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
++...-+++|.++++-+.....-++.++ ....+.+++....-.-++.|...|-
T Consensus 27 pLl~~~i~~A~~vLvni~~~~d~~l~ev-~~~~~~i~~~~~~~a~ii~G~~id~ 79 (95)
T PF12327_consen 27 PLLDVDIKGAKGVLVNITGGPDLSLSEV-NEAMEIIREKADPDANIIWGASIDE 79 (95)
T ss_dssp TTSTS-GGG-SEEEEEEEE-TTS-HHHH-HHHHHHHHHHSSTTSEEEEEEEE-T
T ss_pred ccccCChHHhceEEEEEEcCCCCCHHHH-HHHHHHHHHHhhcCceEEEEEEECC
Confidence 3455668899999999988766788888 7788888877744444556666664
No 442
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=37.02 E-value=1.5e+02 Score=23.20 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
.+.+.|.|+|+... ......+..+|.+++|.+.+ ..+...+ ..+++.+....+ .+-+|.|..
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a-~r~l~~l~~~~~--~~~lVv~~~ 265 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAA-ARVCPELGRRNP--DLRLVVRGP 265 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHH-HHHHHHHhhhCC--CeEEEEeCC
Confidence 46788999998743 23345688999999998754 5566666 566666665432 344555643
No 443
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=36.80 E-value=2.8e+02 Score=24.01 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-hCCCeEEEecc--CCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGSPAYIECSS--KTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa--~~~~~i~~~f~~l~~~ 158 (179)
-++.++++ .+|+|+..|+..-.. ....+..++++.. .+. ....+.. +-|.|-.++-+.+++.
T Consensus 385 Hi~n~~~f--g~pvVVaiN~F~~Dt------------~~Ei~~~~~~~~~~~~~-~~~~~~~wa~GGeGa~eLA~~Vv~a 449 (578)
T PRK13506 385 HINNVAQY--GLPVVVAINRFPTDT------------DEELEWLKEAVLLTGAF-GCEISEAFAQGGEGATALAQAVVRA 449 (578)
T ss_pred HHHHHHHc--CCCeEEEecCCCCCC------------HHHHHHHHHHHHHcCCC-cEEEechhhccchhHHHHHHHHHHH
Confidence 34555555 799999999986532 2455667788887 454 5544433 3367788888887766
Q ss_pred Hh
Q 030337 159 VL 160 (179)
Q Consensus 159 i~ 160 (179)
+-
T Consensus 450 ~e 451 (578)
T PRK13506 450 CE 451 (578)
T ss_pred hh
Confidence 54
No 444
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.51 E-value=48 Score=28.31 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEec--cCCCCcHHHHH
Q 030337 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS--SKTQQNVKAVF 152 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f 152 (179)
+.++ ..-++.++++ .+|+||..|+..... ....+..+++++..|. .+..+. ++-|.|-.++-
T Consensus 357 ~~NL-~rHIeNik~f--GvpvVVAIN~F~tDT------------~aEi~~I~~~~~~~Gv-~~avs~~wa~GGeGa~eLA 420 (557)
T PF01268_consen 357 FANL-ERHIENIKKF--GVPVVVAINRFPTDT------------DAEIELIRELCEELGV-RAAVSEHWAKGGEGAVELA 420 (557)
T ss_dssp HHHH-HHHHHHHHCT--T--EEEEEE--TTS-------------HHHHHHHHHHCCCCCE-EEEEC-HHHHGGGGCHHHH
T ss_pred HHHH-HHHHHHHHhc--CCCeEEEecCCCCCC------------HHHHHHHHHHHHhCCC-CEEEechhhcccccHHHHH
Confidence 3444 3445566665 799999999986532 2445667788888887 543332 22367778888
Q ss_pred HHHHHHH
Q 030337 153 DAAIKVV 159 (179)
Q Consensus 153 ~~l~~~i 159 (179)
+.+++.+
T Consensus 421 ~~Vv~a~ 427 (557)
T PF01268_consen 421 EAVVEAC 427 (557)
T ss_dssp HHHHHH-
T ss_pred HHHHHHh
Confidence 8887776
No 445
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=35.90 E-value=1.1e+02 Score=24.03 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=34.3
Q ss_pred EEEEEeCCCCccccccCcccc-----c---CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSY-----R---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~-----~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
...+.+|.|...-.++...++ . ..+++|.|+|+.+-...-.-......++. ..=+||.||.|+..
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-----~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRILLTKTDVAG 164 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-----hCCEEEEeccccCC
Confidence 345677888654333222221 1 25789999998754322111011222332 23467789999864
No 446
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.09 E-value=1.8e+02 Score=21.14 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=46.2
Q ss_pred cCccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC
Q 030337 58 RGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
.+||.+-++.++.... .++.. ...+..+.+.+.+.|+.++.....+.. .....+.+.+.+.|.
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~-~~ei~~v~~~~~g~~lkvI~e~~~l~~-------------~~i~~a~ria~e~Ga- 145 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAV-YEEIAAVVEACGGAPLKVILETGLLTD-------------EEIIKACEIAIEAGA- 145 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHH-HHHHHHHHHhcCCCeEEEEEecCCCCH-------------HHHHHHHHHHHHhCC-
Confidence 3799999999987422 22333 344556666555688777666655521 344567788888998
Q ss_pred eEEEec
Q 030337 136 AYIECS 141 (179)
Q Consensus 136 ~~~e~S 141 (179)
.|+.+|
T Consensus 146 D~IKTs 151 (203)
T cd00959 146 DFIKTS 151 (203)
T ss_pred CEEEcC
Confidence 899998
No 447
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=34.79 E-value=54 Score=24.03 Aligned_cols=67 Identities=18% Similarity=0.048 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCccc-cccCcccccC--ccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDY-NRLRPLSYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~-~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|+|+|-.... ..+....+.+ ++.+++|...+ ..+...+ ...++.++...- ...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~-~~~l~~l~~~~~-~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYET-ERAITELALYGI-PVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHH-HHHHHHHHHCCC-CCCEEEEeCCcCc
Confidence 77899999864221 1222223333 57888888866 5566666 566666665532 2235778988754
No 448
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.41 E-value=1.1e+02 Score=20.17 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=26.5
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 102 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~ 102 (179)
+++++++. .++..+...+ ..+.+.+++.. +++++++.|+..
T Consensus 50 ~~d~V~iS--~~~~~~~~~~-~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 50 DVDVIGLS--SLSGGHMTLF-PEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred CCCEEEEc--ccchhhHHHH-HHHHHHHHhcCCCCCEEEEECCCC
Confidence 45555554 4456666666 78888888875 466666666643
No 449
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=34.27 E-value=2.9e+02 Score=23.39 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=45.4
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEE--eccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE--CSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~Sa~~~~~i~~~f~~l~~~i 159 (179)
-++.++++ .+|+||..||.-... .......++++...+. +..- +=++-|.|-.++=+.++..+
T Consensus 361 Hi~Nikkf--gvp~VVAIN~F~tDt------------~~Ei~~i~~~~~~~gv-~~~ls~vwakGg~Gg~eLA~kVv~~~ 425 (554)
T COG2759 361 HIENIKKF--GVPVVVAINKFPTDT------------EAEIAAIEKLCEEHGV-EVALSEVWAKGGEGGIELAKKVVEAI 425 (554)
T ss_pred HHHHHHHc--CCCeEEEeccCCCCC------------HHHHHHHHHHHHHcCC-ceeehhhhhccCccHHHHHHHHHHHH
Confidence 34555555 799999999986422 2456677889999986 4433 33455788888888888877
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
-+
T Consensus 426 ~~ 427 (554)
T COG2759 426 EQ 427 (554)
T ss_pred hC
Confidence 65
No 450
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.46 E-value=1.6e+02 Score=24.32 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCccccccC----ccccc--CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccc
Q 030337 36 VNLGLWDTAGQEDYNRLR----PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 109 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 109 (179)
+.+.|.||+|........ ..+.. ..+..++|.+.+ ....++ ..++..+.. -.+--++.||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~-~~i~~~f~~---l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADV-MTILPKLAE---IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHH-HHHHHhcCc---CCCCEEEEEcccCCC---
Confidence 678899999985432211 11121 345666676653 222233 222222221 123346789999854
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH-HH----HHHHHHHhC
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA-VF----DAAIKVVLQ 161 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~-~f----~~l~~~i~~ 161 (179)
..-.+..++...+. ++..+| +|++|.+ ++ +++++.++.
T Consensus 357 -----------~~G~~Lsv~~~tgl-PIsylt--~GQ~VpdDi~~a~~~~Lv~~ll~ 399 (407)
T PRK12726 357 -----------RIGDLYTVMQETNL-PVLYMT--DGQNITENIFRPKSRWLAERFVG 399 (407)
T ss_pred -----------CccHHHHHHHHHCC-CEEEEe--cCCCCCcccCCCCHHHHHHHHhc
Confidence 23356777788887 555554 5666664 33 345555554
No 451
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.02 E-value=2.3e+02 Score=21.84 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCCcccccc----Ccccc--cCccEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRL----RPLSY--RGADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
.+.+-|.||+|....... +..++ ...+-.++|.|++ ......+ +...+... .+-=++.||.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~----~~~~f~~~---~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE----IITNFKDI---HIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH----HHHHhCCC---CCCEEEEEeecCCCC
Confidence 367889999997642211 11121 2345678899876 3333322 22333321 223367899998542
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
- -.+..++...+. ++..++ +|+++.+
T Consensus 227 ~--------------G~~l~~~~~~~~-Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 227 S--------------GELLKIPAVSSA-PIVLMT--DGQDVKK 252 (270)
T ss_pred c--------------cHHHHHHHHHCc-CEEEEe--CCCCCCc
Confidence 2 356667777777 455444 4665553
No 452
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.92 E-value=74 Score=28.23 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=43.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~ 106 (179)
.+.+.|+|+|....... .......+|++|+|... +..+...+ ...++.++.. +.++ -+|.|+.|...
T Consensus 655 ~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~-~~~~~~l~~~--~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECG-RADAQGISRL--NGEVTGVFLNMLDPND 722 (754)
T ss_pred hCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHH-HHHHHHHHhc--CCceEEEEecCCChhh
Confidence 46788999998754222 12345578999988774 45566665 5566666654 3344 48899998643
No 453
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=32.45 E-value=3.4e+02 Score=23.71 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=42.7
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCCeEEEec--cCCCCcHHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECS--SKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~S--a~~~~~i~~~f~~l~~~ 158 (179)
-++.++++ ++|+|+..|+..-.. ....+..+++++ ..|......+. ++-|.|-.++-+.+++.
T Consensus 429 Hien~~~f--gvpvVVAIN~F~tDT------------~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a 494 (625)
T PTZ00386 429 HIQNIRKF--GVPVVVALNKFSTDT------------DAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRV 494 (625)
T ss_pred HHHHHHHc--CCCeEEEecCCCCCC------------HHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHH
Confidence 34455554 799999999986532 245567788888 77842444433 33367777887777766
Q ss_pred Hh
Q 030337 159 VL 160 (179)
Q Consensus 159 i~ 160 (179)
+-
T Consensus 495 ~~ 496 (625)
T PTZ00386 495 TE 496 (625)
T ss_pred Hh
Confidence 54
No 454
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=31.35 E-value=2.5e+02 Score=21.79 Aligned_cols=69 Identities=20% Similarity=0.073 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCCccc-cccCcccccCccEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCc-EEEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENV--AKKWIPELRHYAPGVP-IILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~p-iilv~nK~D~ 104 (179)
.+.+.|.|++|.-.- ..........+|.+|++... +..++..+ ....+..+++...+.+ +-+|.|+.+.
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSN-DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecc-hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 478889998764310 11112223468888777664 34455433 0333444444322344 5588999875
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.29 E-value=3.2e+02 Score=24.74 Aligned_cols=105 Identities=20% Similarity=0.068 Sum_probs=56.3
Q ss_pred EEEEEEeCCCCcccccc----Ccc--cccCccEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNRL----RPL--SYRGADVFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~----~~~--~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 108 (179)
..+.|.||+|....... ... -....+-.++|.|.+. ...++++. ..+.....--+-=++.||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~----~~f~~~~~~~i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV----HAYRHGAGEDVDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH----HHHhhcccCCCCEEEEeccCCCCC-
Confidence 45889999995432211 000 1234556788888874 34555442 222221100122467899998543
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcH-HHHH----HHHHHHHhC
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV-KAVF----DAAIKVVLQ 161 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i-~~~f----~~l~~~i~~ 161 (179)
.-.+..+....+. ++..++ +|++| +++. +.+++.++.
T Consensus 339 -------------~G~iL~i~~~~~l-PI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 -------------LGPALDTVIRHRL-PVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred -------------ccHHHHHHHHHCC-CeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 2356667777777 455544 57777 3332 345665554
No 456
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=31.10 E-value=3e+02 Score=22.59 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEe
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGT 100 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~n 100 (179)
-++|.+.+-...+||+..+..-..+...+++.. .++|++|.|+
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gs 196 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGS 196 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 468999999999998833222122222233221 3789999877
No 457
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.10 E-value=35 Score=24.47 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=7.3
Q ss_pred hccCCCCCcccC
Q 030337 168 KKKKSHRACSIL 179 (179)
Q Consensus 168 ~~~~~~~~c~~~ 179 (179)
..++..+||.||
T Consensus 187 sAKK~NsCC~i~ 198 (198)
T KOG0861|consen 187 SAKKTNSCCIIM 198 (198)
T ss_pred HHhhcCCceecC
Confidence 445566677665
No 458
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=30.54 E-value=1.5e+02 Score=19.11 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=18.1
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+++.+.+..+..|++++|.+...
T Consensus 58 ~~l~~l~~~~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 58 ELLKELLKWAPHIPVLLLGEHDSP 81 (109)
T ss_pred HHHHHHHhhCCCCCEEEECCCCcc
Confidence 445566666678999999988776
No 459
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.10 E-value=1.9e+02 Score=20.03 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=29.9
Q ss_pred CccEEEEEEeCCChhh---H-HHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 59 GADVFILAFSLISKAS---Y-ENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s---~-~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+++.+++.+-..|... + +++ ..++..+++..++.|++++.-..
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~-~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERL-GPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHH-HHHHHHHHHHCcCCCEEEEecCC
Confidence 6788888887776532 2 333 56677777777788999887654
No 460
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=29.87 E-value=1.3e+02 Score=17.98 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=28.3
Q ss_pred EEECCeEEEEEEEeCCCCccccccCccc-ccCccEEEEEEeCCChhhHHH
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLS-YRGADVFILAFSLISKASYEN 77 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~ 77 (179)
+..|| +.+--|+|.|.|....... .+..-.+-+-|-.+|.+-|.=
T Consensus 4 ~n~nG----~S~c~~~G~E~Y~~f~~~~~~k~~~~~qYdYr~~~GeLFsc 49 (69)
T PF12989_consen 4 MNKNG----VSICQTPGEEKYEKFQLGIGRKGVTKYQYDYRHTDGELFSC 49 (69)
T ss_pred eccCC----eeecCCCCceeeeeeeeccccccceEEEEeeecCCccchhh
Confidence 44556 5567789999887765544 555555666666666555543
No 461
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.50 E-value=1.6e+02 Score=18.89 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=33.9
Q ss_pred EEEEEEeCCCCc-cccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 36 VNLGLWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 36 ~~~~i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
+.+.+.|..-.. .+.... .-.+.+.+.+ +.....++... ..+.+.+++..+++++++.|.-.-
T Consensus 29 ~~v~~~d~~~~~~~l~~~~--~~~~pd~V~i--S~~~~~~~~~~-~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 29 HEVDILDANVPPEELVEAL--RAERPDVVGI--SVSMTPNLPEA-KRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp BEEEEEESSB-HHHHHHHH--HHTTCSEEEE--EESSSTHHHHH-HHHHHHHHTTCTTSEEEEEESSSG
T ss_pred CeEEEECCCCCHHHHHHHH--hcCCCcEEEE--EccCcCcHHHH-HHHHHHHHhcCCCCEEEEECCchh
Confidence 466677754422 111110 1125666444 44334455555 566667777777888888876553
No 462
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=29.10 E-value=2.1e+02 Score=20.28 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=42.8
Q ss_pred CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 91 PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 91 ~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
++..++++.|-+-+.+.+ -+.+++..+-...|+ +.+.-|.+.--.-.|.++...+
T Consensus 78 gek~i~v~SNsaG~~~~D-----------~d~s~Ak~le~k~gI-pVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 78 GEKDIAVFSNSAGLTEYD-----------HDDSKAKALEAKIGI-PVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred CcccEEEEecCcCccccC-----------CchHHHHHHHHhhCC-ceEeecccCCCccHHHHHHHhC
Confidence 567899999988775543 467888889899999 8898898887777777766554
No 463
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.25 E-value=1.5e+02 Score=24.86 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=40.4
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHH
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE 85 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 85 (179)
++++..+-|+-+|...|...+++-+++|=+|...|..|+-.- .++++.
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrE-tEIYqT 259 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRE-TEIYQT 259 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhH-HHHHHH
Confidence 588889999999999999999999999999999999887544 344443
No 464
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=1.3e+02 Score=28.45 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=32.8
Q ss_pred ccCccEEEEEEeCCChhhHH-----HHHHHH---HHHHhhcC-CCCcEEEEEeCCCccc
Q 030337 57 YRGADVFILAFSLISKASYE-----NVAKKW---IPELRHYA-PGVPIILVGTKLDLRD 106 (179)
Q Consensus 57 ~~~~~~~i~v~d~~~~~s~~-----~~~~~~---~~~i~~~~-~~~piilv~nK~D~~~ 106 (179)
.+..+|+|+..|+.+.-+-+ .....+ +.++.... -..||.|++||.|+.+
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 45689999999998653221 111122 33444433 3899999999999965
No 465
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=26.34 E-value=1.7e+02 Score=23.99 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC--h---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS--K---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~--~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
....+.+.+.|.+|+..+......--..+|..++.....- - .++... .+=...+.....-.++++.+||+|..+
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngq-t~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ-TREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccch-hhhhhhhhccccceeeeEEeecccccC
Confidence 4567889999999998877655555666776655555511 1 122111 000112222223467889999999865
Q ss_pred c
Q 030337 107 D 107 (179)
Q Consensus 107 ~ 107 (179)
.
T Consensus 157 ~ 157 (391)
T KOG0052|consen 157 P 157 (391)
T ss_pred C
Confidence 3
No 466
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=25.58 E-value=1.2e+02 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.+.+..||.++.|+..+++.+...+
T Consensus 242 ~~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 242 IVPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 34677789999999999999998765
No 467
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=25.55 E-value=1.3e+02 Score=22.20 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=34.1
Q ss_pred cCcccccCccEEEEE-EeCCCh-----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 52 LRPLSYRGADVFILA-FSLISK-----ASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 52 ~~~~~~~~~~~~i~v-~d~~~~-----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
.+..+|+.++...+. -+..+. -.+.++...|-..++...+..|+||+|+-.-
T Consensus 48 vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQG 105 (207)
T PF11288_consen 48 VFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQG 105 (207)
T ss_pred cccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChH
Confidence 455677888876666 333332 1456666666667777667899999997653
No 468
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=25.54 E-value=87 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.481 Sum_probs=13.5
Q ss_pred EEEEEEeCCChhhHHHH
Q 030337 62 VFILAFSLISKASYENV 78 (179)
Q Consensus 62 ~~i~v~d~~~~~s~~~~ 78 (179)
-++++||+.++.....+
T Consensus 3 ~~lv~YDi~~~k~~~kv 19 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKV 19 (78)
T ss_dssp EEEEEEEEHSHHHHHHH
T ss_pred EEEEEEECCCcHHHHHH
Confidence 47899999888766665
No 469
>PRK15029 arginine decarboxylase; Provisional
Probab=24.80 E-value=1.5e+02 Score=26.55 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=33.4
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
+.|++|+=+.+.+.+.++.. ..++..+++...++||+++..+.|.
T Consensus 53 ~~DlVLLD~~LPd~dG~~~~-~ell~~IR~~~~~iPIIlLTar~~~ 97 (755)
T PRK15029 53 AIDCLMFSYQMEHPDEHQNV-RQLIGKLHERQQNVPVFLLGDREKA 97 (755)
T ss_pred CCcEEEEECCCCCCccchhH-HHHHHHHHhhCCCCCEEEEEcCCcc
Confidence 46777777777777777655 5677777766568999999888763
No 470
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.65 E-value=1.6e+02 Score=23.64 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=27.6
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 60 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 60 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+.+=+++.|+.+-.|..-+ ..++.+++..++.+ |++||=.
T Consensus 121 ~g~D~iviD~AhGhs~~~i--~~ik~ik~~~P~~~-vIaGNV~ 160 (346)
T PRK05096 121 PALNFICIDVANGYSEHFV--QFVAKAREAWPDKT-ICAGNVV 160 (346)
T ss_pred CCCCEEEEECCCCcHHHHH--HHHHHHHHhCCCCc-EEEeccc
Confidence 4555678898888777665 56777777767666 5666644
No 471
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=23.96 E-value=2e+02 Score=20.73 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=29.0
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHh
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR 87 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~ 87 (179)
.+.|+|++...... ........+|.+|+|...... +...+ ...++.++
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~~-~~~~~-~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEGRT-TQEAV-KEALSALE 197 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECCCC-CHHHH-HHHHHHhc
Confidence 57889988654321 222345679999999887643 33444 34455554
No 472
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.48 E-value=1.1e+02 Score=26.09 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=25.8
Q ss_pred EECCeEEEEEEEeCCCCc-----cccccCcc-------------cccCccEEEEEEeCCChh
Q 030337 30 VVDGSTVNLGLWDTAGQE-----DYNRLRPL-------------SYRGADVFILAFSLISKA 73 (179)
Q Consensus 30 ~~~~~~~~~~i~D~~G~~-----~~~~~~~~-------------~~~~~~~~i~v~d~~~~~ 73 (179)
.++|+--.+.|||.+..- ...+-.+. |.--+|+.|.|||+.|..
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 345565689999977631 11111111 122367889999988764
No 473
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=22.77 E-value=2.3e+02 Score=18.48 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-hCC-CeEEEeccCCCCcHHHHHHHH
Q 030337 93 VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGS-PAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 93 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~e~Sa~~~~~i~~~f~~l 155 (179)
....|++-=++-.... .+-+.+++..++.. ++. .+.++-...+|.+-+.+|.+|
T Consensus 52 ~gl~ILaFPcnqFg~Q---------Ep~~~~ei~~~~~~~~~~~F~vf~ki~VnG~~ahPly~~L 107 (108)
T PF00255_consen 52 KGLEILAFPCNQFGNQ---------EPGSNEEIKEFCKEKFGVTFPVFEKIDVNGPDAHPLYKYL 107 (108)
T ss_dssp GTEEEEEEEBSTTTTT---------TSSCHHHHHHHHCHCHT-SSEEBS-BBSSSTTB-HHHHHH
T ss_pred CCeEEEeeehHHhccc---------cCCCHHHHHHHHHhccCCcccceEEEEecCCCCcHHHHHh
Confidence 3455666555543221 24567778888887 333 256777888899999999886
No 474
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=22.75 E-value=67 Score=18.68 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=15.9
Q ss_pred ccCCCCcHHHHHHHHHHHHh
Q 030337 141 SSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 141 Sa~~~~~i~~~f~~l~~~i~ 160 (179)
||++|-|+.++.+..++..+
T Consensus 44 tAknGgNvKEvme~~lr~~l 63 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKL 63 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 89999999999988777544
No 475
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=22.18 E-value=3.1e+02 Score=19.73 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred CccEEEEEEeCCC------hhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 030337 59 GADVFILAFSLIS------KASYENVAKKWIPELRHYAPGVPIILVGT 100 (179)
Q Consensus 59 ~~~~~i~v~d~~~------~~s~~~~~~~~~~~i~~~~~~~piilv~n 100 (179)
..+.+++.+-..| ++.+..-...++..+++..++.++++++.
T Consensus 89 ~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 5788888887776 33332222556666666666788888864
No 476
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=22.07 E-value=2.9e+02 Score=19.46 Aligned_cols=43 Identities=35% Similarity=0.533 Sum_probs=27.6
Q ss_pred cCccEEEEEEeCCChh--------------------hHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 030337 58 RGADVFILAFSLISKA--------------------SYENVAKKWIPELRHYAPGVPIILVGT 100 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~--------------------s~~~~~~~~~~~i~~~~~~~piilv~n 100 (179)
...+.+++.+-..|.. .|..-...++..+++..+..+|++++.
T Consensus 67 ~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 67 KKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred ccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4788999998777642 122222455666666556788888874
No 477
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=21.98 E-value=1.3e+02 Score=20.02 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=26.9
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+..+++.=|++-++....+ ....+ .. ++|++.|++|..|-
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l-~~lc~---~~--~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHL-PALCE---EK--NVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCHHHHHHHH-HHHHH---hc--CCCEEEeCCHHHHH
Confidence 47777777776655555444 32222 22 79999999998874
No 478
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.95 E-value=3.7e+02 Score=20.63 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=36.6
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 130 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (179)
.++|+++++--..-+.+-+.+ ..++..+.+..++.|+++ -|-...... .++.+...++++
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i-~~~~~~v~~a~~~lpi~i-Yn~P~~tg~-----------~l~~~~~~~L~~ 154 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEI-KDYYREIIAAAASLPMII-YHIPALTGV-----------NLTLEQFLELFE 154 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCCEEE-EeCccccCC-----------CCCHHHHHHHhc
Confidence 468888876444444455566 566666666554688876 555543322 266677777775
No 479
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=21.80 E-value=62 Score=17.14 Aligned_cols=20 Identities=0% Similarity=-0.057 Sum_probs=12.5
Q ss_pred cccCccEEEEEEeCCChhhH
Q 030337 56 SYRGADVFILAFSLISKASY 75 (179)
Q Consensus 56 ~~~~~~~~i~v~d~~~~~s~ 75 (179)
|+...+.=+.++|++||.+.
T Consensus 15 Yva~~~~Gl~IvDISnPs~P 34 (42)
T PF08309_consen 15 YVADGNNGLVIVDISNPSNP 34 (42)
T ss_pred EEEeCCCCEEEEECCCCCCC
Confidence 33334444678899988653
No 480
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=21.65 E-value=1.6e+02 Score=22.53 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.2
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.+.+-.||.++.|+..+++.+.+.+
T Consensus 239 ~~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 239 LTPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEEecccccCcCHHHHHHHHHHHC
Confidence 34677789999999999999998865
No 481
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=1e+02 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.8
Q ss_pred CccEEEEEEeCCChhhH
Q 030337 59 GADVFILAFSLISKASY 75 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~ 75 (179)
...+..+||++.+.+.+
T Consensus 131 gsRvmmLvYnL~~v~al 147 (205)
T COG5400 131 GSRVMMLVYNLDDVDAL 147 (205)
T ss_pred ceEEEEEEecCCCHHHH
Confidence 45688899998876543
No 482
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=21.55 E-value=1.8e+02 Score=21.54 Aligned_cols=71 Identities=15% Similarity=-0.055 Sum_probs=36.6
Q ss_pred eeehhhhhC--CCCC--c-ccCceeeceeeEEEECCeEEEEEEEeCCCCccccc------cCcccccC--ccEEEEEEeC
Q 030337 3 FIYIICNYS--LGKQ--D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYRG--ADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~--~f~~--~-~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~~--~~~~i~v~d~ 69 (179)
+|+.+.... .|.- . ...|.|......-...+....+.+.||+|...... .....+.- ++.+|+..+.
T Consensus 22 ~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~ 101 (224)
T cd01851 22 FLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWE 101 (224)
T ss_pred HHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccC
Confidence 355555565 6631 1 23334543332211123457899999999653221 11112223 7788888777
Q ss_pred CChh
Q 030337 70 ISKA 73 (179)
Q Consensus 70 ~~~~ 73 (179)
....
T Consensus 102 ~~~~ 105 (224)
T cd01851 102 TILG 105 (224)
T ss_pred cccH
Confidence 6544
No 483
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=36 Score=22.57 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.8
Q ss_pred hccCCCCCccc
Q 030337 168 KKKKSHRACSI 178 (179)
Q Consensus 168 ~~~~~~~~c~~ 178 (179)
.+|+++.+|||
T Consensus 57 MgrkKSKcCCI 67 (121)
T KOG4102|consen 57 MGRKKSKCCCI 67 (121)
T ss_pred ccccccceeEE
Confidence 36777777777
No 484
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=21.11 E-value=2.4e+02 Score=18.06 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=26.5
Q ss_pred cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 56 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 56 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+++||++|..+|...+.+-... + .-.-...+.||+++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~-E----lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAF-E----LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHH-H----HHHHHHTTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHH-H----HHHHHHCCCEEEEEEcCCcc
Confidence 36789999999998554433322 1 11111126899999887765
No 485
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=20.97 E-value=40 Score=19.56 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=6.6
Q ss_pred ccCCCCCccc
Q 030337 169 KKKSHRACSI 178 (179)
Q Consensus 169 ~~~~~~~c~~ 178 (179)
+++++.+|||
T Consensus 32 gkkkSK~CCI 41 (60)
T PF07491_consen 32 GKKKSKCCCI 41 (60)
T ss_pred ccccCceeee
Confidence 5666667776
No 486
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=20.65 E-value=1.5e+02 Score=22.11 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=39.3
Q ss_pred EEEEEeCCCCcc-ccccCcccc--cCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 37 NLGLWDTAGQED-YNRLRPLSY--RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 37 ~~~i~D~~G~~~-~~~~~~~~~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+-+-|+.|... ..... ..+ .++|.+|++=|+++.. ..+.+ ..++..+... +.|+++|---.|.
T Consensus 7 Il~iSDiHgn~~~le~l~-~~~~~~~~D~vv~~GDl~~~g~~~~~~-~~~l~~l~~l--~~pv~~V~GNhD~ 74 (224)
T cd07388 7 VLATSNPKGDLEALEKLV-GLAPETGADAIVLIGNLLPKAAKSEDY-AAFFRILGEA--HLPTFYVPGPQDA 74 (224)
T ss_pred EEEEEecCCCHHHHHHHH-HHHhhcCCCEEEECCCCCCCCCCHHHH-HHHHHHHHhc--CCceEEEcCCCCh
Confidence 355678888532 22222 123 4799999999999876 35544 4555555443 4677766555664
No 487
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=20.61 E-value=2e+02 Score=23.17 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=23.9
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 030337 60 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 100 (179)
Q Consensus 60 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 100 (179)
+.+=++|.|+.+-.+-..+ ..++.+++..+++||+ +||
T Consensus 119 agvD~ivID~a~g~s~~~~--~~ik~ik~~~~~~~vi-aGN 156 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVI--DMIKKIKKKFPDVPVI-AGN 156 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHH--HHHHHHHHHSTTSEEE-EEE
T ss_pred cCCCEEEccccCccHHHHH--HHHHHHHHhCCCceEE-ecc
Confidence 4445668888887766554 4566777776666665 677
No 488
>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.
Probab=20.41 E-value=3.1e+02 Score=20.00 Aligned_cols=46 Identities=9% Similarity=0.271 Sum_probs=30.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 61 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 61 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
-++++-+-.-...+|+.+...+..++.+-.++..|++++...=++.
T Consensus 54 KAivIfVP~~~lk~f~KIq~rLv~ELEKKfsgk~Vv~iAqRrIl~k 99 (189)
T PF01251_consen 54 KAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPK 99 (189)
T ss_dssp EEEEEEE-CCCCHHHHHHCHHHHHHHHHCTTTCEEEEEE------S
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeccceEcCC
Confidence 3455555555667999887788889998888899999998775554
No 489
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.30 E-value=3.7e+02 Score=19.88 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=46.0
Q ss_pred cCccEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC
Q 030337 58 RGADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 135 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
.+||.+=+|+++... ..++.+ ..-+..+.+.+.+.|+.++....-+.+ .....+.+++.+.|.
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v-~~ei~~i~~~~~g~~lKvIlE~~~L~~-------------~ei~~a~~ia~eaGA- 146 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVV-YDDIRAVVEACAGVLLKVIIETGLLTD-------------EEIRKACEICIDAGA- 146 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHH-HHHHHHHHHHcCCCeEEEEEecCCCCH-------------HHHHHHHHHHHHhCC-
Confidence 479999999987742 234444 334455555555678777666655533 233467778888998
Q ss_pred eEEEecc
Q 030337 136 AYIECSS 142 (179)
Q Consensus 136 ~~~e~Sa 142 (179)
.|+.+|.
T Consensus 147 DfvKTsT 153 (211)
T TIGR00126 147 DFVKTST 153 (211)
T ss_pred CEEEeCC
Confidence 8999984
No 490
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.05 E-value=2.2e+02 Score=20.53 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=25.7
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEe
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGT 100 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~n 100 (179)
+++ ++..+.+...+...+ ..+++.+++..+ ++++++.|.
T Consensus 133 ~~d--~v~lS~~~~~~~~~~-~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 133 KPD--ILGLSALMTTTMGGM-KEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred CCC--EEEEeccccccHHHH-HHHHHHHHHCCCCcCCeEEEECC
Confidence 444 445555555566666 778888888764 677777765
No 491
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.00 E-value=2.3e+02 Score=22.31 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=36.7
Q ss_pred EEEEEEeCCCCcc--ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQED--YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~--~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
-++-+||+..+.. +....... + .+.-+++|+++++....+. +.+++..+ +|-++.|-+-..
T Consensus 63 ~~~vl~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~eei~~~a----~~Vk~e~G--~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 63 AKLVLWDINKQGNEETVKEIRKI--G-EAKAYTCDISDREEIYRLA----KKVKKEVG--DVDILVNNAGIV 125 (300)
T ss_pred CeEEEEeccccchHHHHHHHHhc--C-ceeEEEecCCCHHHHHHHH----HHHHHhcC--CceEEEeccccc
Confidence 3688999876533 22221111 2 6788999999998887663 34554433 444555655554
Done!