Query 030337
Match_columns 179
No_of_seqs 115 out of 1394
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.2E-38 1.1E-42 232.4 13.4 147 3-161 28-176 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 6E-32 2.1E-36 197.6 15.5 175 3-179 24-202 (212)
3 3q3j_B RHO-related GTP-binding 100.0 4.7E-30 1.6E-34 188.3 15.7 163 3-165 42-207 (214)
4 4dsu_A GTPase KRAS, isoform 2B 100.0 4.6E-30 1.6E-34 183.7 14.8 164 3-179 19-189 (189)
5 3reg_A RHO-like small GTPase; 100.0 2.2E-29 7.4E-34 181.6 18.2 153 3-163 38-190 (194)
6 2atx_A Small GTP binding prote 100.0 4.3E-29 1.5E-33 180.0 17.4 159 3-161 33-193 (194)
7 3oes_A GTPase rhebl1; small GT 100.0 1.2E-29 4.3E-34 184.0 14.5 161 3-179 39-201 (201)
8 2fu5_C RAS-related protein RAB 100.0 1.5E-29 5.3E-34 180.5 14.3 151 3-165 23-175 (183)
9 3t5g_A GTP-binding protein RHE 100.0 7.4E-29 2.5E-33 176.7 17.7 152 3-166 21-174 (181)
10 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.6E-29 1.9E-33 177.6 16.6 163 3-165 20-184 (186)
11 2bov_A RAla, RAS-related prote 100.0 2.9E-29 1E-33 182.1 14.8 147 3-161 29-177 (206)
12 2q3h_A RAS homolog gene family 100.0 4.3E-29 1.5E-33 180.9 15.6 159 3-161 35-195 (201)
13 1m7b_A RND3/RHOE small GTP-bin 100.0 5.2E-29 1.8E-33 178.3 15.5 159 3-161 22-183 (184)
14 3c5c_A RAS-like protein 12; GD 100.0 8.4E-29 2.9E-33 177.9 15.3 146 3-161 36-186 (187)
15 3bwd_D RAC-like GTP-binding pr 100.0 2.5E-29 8.7E-34 179.0 11.5 160 3-162 23-182 (182)
16 2gf0_A GTP-binding protein DI- 100.0 3.8E-29 1.3E-33 180.6 11.9 147 3-162 23-172 (199)
17 2j1l_A RHO-related GTP-binding 100.0 1.5E-28 5.2E-33 180.1 15.2 161 3-163 49-211 (214)
18 1gwn_A RHO-related GTP-binding 100.0 1.6E-28 5.3E-33 179.2 14.7 159 3-161 43-204 (205)
19 2hup_A RAS-related protein RAB 100.0 1.1E-28 3.8E-33 179.2 13.0 148 3-161 44-193 (201)
20 2gco_A H9, RHO-related GTP-bin 100.0 1E-27 3.5E-32 174.0 17.8 159 3-161 40-200 (201)
21 2ew1_A RAS-related protein RAB 100.0 2E-28 6.7E-33 178.2 14.0 147 3-161 41-189 (201)
22 3ihw_A Centg3; RAS, centaurin, 100.0 4E-28 1.4E-32 174.1 14.9 145 3-162 35-181 (184)
23 3tw8_B RAS-related protein RAB 100.0 6.8E-28 2.3E-32 171.1 15.7 150 3-164 24-174 (181)
24 1z08_A RAS-related protein RAB 100.0 8.1E-28 2.8E-32 169.3 15.7 147 3-161 21-169 (170)
25 3cpj_B GTP-binding protein YPT 100.0 1.2E-27 4.1E-32 176.3 16.7 150 3-164 28-179 (223)
26 2fv8_A H6, RHO-related GTP-bin 100.0 1.7E-27 5.9E-32 173.5 17.3 161 3-163 40-202 (207)
27 2a5j_A RAS-related protein RAB 100.0 6E-28 2.1E-32 173.7 14.6 147 3-161 36-184 (191)
28 3kkq_A RAS-related protein M-R 100.0 6.3E-28 2.2E-32 172.1 14.5 147 3-161 33-182 (183)
29 4gzl_A RAS-related C3 botulinu 100.0 6.4E-28 2.2E-32 175.6 14.4 157 3-159 45-203 (204)
30 2bcg_Y Protein YP2, GTP-bindin 100.0 2.1E-27 7.2E-32 172.7 17.1 147 3-161 23-171 (206)
31 2iwr_A Centaurin gamma 1; ANK 100.0 5.8E-28 2E-32 171.6 13.7 145 3-162 22-170 (178)
32 1c1y_A RAS-related protein RAP 100.0 1.2E-27 4.1E-32 167.8 14.2 147 3-160 18-166 (167)
33 1r2q_A RAS-related protein RAB 100.0 2E-27 6.7E-32 167.0 15.2 146 3-160 21-168 (170)
34 2gf9_A RAS-related protein RAB 100.0 5.5E-27 1.9E-31 168.3 17.8 147 3-161 37-185 (189)
35 3tkl_A RAS-related protein RAB 100.0 1.6E-27 5.6E-32 171.6 15.0 150 3-164 31-182 (196)
36 1u8z_A RAS-related protein RAL 100.0 1.3E-27 4.4E-32 167.5 13.9 147 3-161 19-167 (168)
37 2hxs_A RAB-26, RAS-related pro 100.0 5.4E-28 1.9E-32 171.5 12.0 149 3-163 21-175 (178)
38 2efe_B Small GTP-binding prote 100.0 3.7E-27 1.3E-31 167.6 16.2 148 3-162 27-176 (181)
39 2fn4_A P23, RAS-related protei 100.0 1.8E-27 6.3E-32 168.9 14.4 147 3-161 24-172 (181)
40 1z2a_A RAS-related protein RAB 100.0 2.6E-27 8.8E-32 166.3 14.8 147 3-161 20-167 (168)
41 2bme_A RAB4A, RAS-related prot 100.0 1.6E-27 5.5E-32 170.3 13.9 147 3-161 25-173 (186)
42 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-27 1.9E-31 164.8 16.5 146 3-160 21-168 (170)
43 1z0f_A RAB14, member RAS oncog 100.0 2.8E-27 9.7E-32 167.7 15.0 147 3-161 30-178 (179)
44 1ek0_A Protein (GTP-binding pr 100.0 2.6E-27 8.9E-32 166.4 14.7 149 3-160 18-168 (170)
45 2g6b_A RAS-related protein RAB 100.0 8.5E-27 2.9E-31 165.6 17.0 148 3-162 25-175 (180)
46 2g3y_A GTP-binding protein GEM 99.9 2.9E-27 9.8E-32 173.3 14.2 145 3-160 52-202 (211)
47 1zbd_A Rabphilin-3A; G protein 99.9 6E-27 2.1E-31 169.8 15.7 147 3-161 23-171 (203)
48 2fg5_A RAB-22B, RAS-related pr 99.9 3.6E-27 1.2E-31 169.9 14.1 147 3-161 38-186 (192)
49 1g16_A RAS-related protein SEC 99.9 4.2E-27 1.4E-31 165.5 13.8 146 3-161 18-165 (170)
50 2o52_A RAS-related protein RAB 99.9 1.9E-27 6.4E-32 172.6 12.3 147 3-161 40-188 (200)
51 2a9k_A RAS-related protein RAL 99.9 2.1E-27 7.1E-32 169.5 12.3 147 3-161 33-181 (187)
52 1kao_A RAP2A; GTP-binding prot 99.9 3.8E-27 1.3E-31 165.0 13.1 146 3-160 18-165 (167)
53 1x3s_A RAS-related protein RAB 99.9 1.5E-26 5.2E-31 166.3 16.4 149 3-164 30-181 (195)
54 2oil_A CATX-8, RAS-related pro 99.9 6.2E-27 2.1E-31 168.5 14.3 147 3-161 40-188 (193)
55 3q72_A GTP-binding protein RAD 99.9 8.5E-27 2.9E-31 163.6 14.6 146 3-161 17-164 (166)
56 3dz8_A RAS-related protein RAB 99.9 3.9E-28 1.3E-32 174.7 7.9 147 3-161 38-186 (191)
57 2atv_A RERG, RAS-like estrogen 99.9 5.3E-27 1.8E-31 169.4 13.6 146 3-161 43-191 (196)
58 3cbq_A GTP-binding protein REM 99.9 4.7E-27 1.6E-31 170.0 13.3 148 3-162 38-189 (195)
59 2p5s_A RAS and EF-hand domain 99.9 3.9E-27 1.3E-31 170.6 12.9 153 3-161 43-197 (199)
60 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.9E-26 6.5E-31 163.4 16.0 148 3-162 22-175 (177)
61 2yc2_C IFT27, small RAB-relate 99.9 2.6E-27 9E-32 171.9 11.8 149 3-163 35-194 (208)
62 2il1_A RAB12; G-protein, GDP, 99.9 2.4E-27 8.2E-32 170.9 11.1 148 3-161 41-190 (192)
63 1vg8_A RAS-related protein RAB 99.9 9.2E-27 3.1E-31 169.1 14.3 147 3-162 23-176 (207)
64 3q85_A GTP-binding protein REM 99.9 9.7E-27 3.3E-31 163.7 14.0 147 3-161 17-167 (169)
65 3bc1_A RAS-related protein RAB 99.9 8.1E-27 2.8E-31 167.3 13.4 147 3-161 26-185 (195)
66 2y8e_A RAB-protein 6, GH09086P 99.9 1.3E-26 4.5E-31 164.2 14.1 146 3-160 29-176 (179)
67 1z06_A RAS-related protein RAB 99.9 1.1E-26 3.6E-31 166.9 13.6 146 3-160 35-187 (189)
68 2nzj_A GTP-binding protein REM 99.9 1.4E-26 4.7E-31 163.7 13.8 145 3-160 19-168 (175)
69 2wkq_A NPH1-1, RAS-related C3 99.9 2.7E-26 9.1E-31 177.8 16.7 160 3-162 170-331 (332)
70 2f7s_A C25KG, RAS-related prot 99.9 2.7E-27 9.2E-32 173.4 10.3 148 3-162 40-200 (217)
71 3con_A GTPase NRAS; structural 99.9 4.2E-26 1.4E-30 163.6 16.0 146 3-161 36-183 (190)
72 2erx_A GTP-binding protein DI- 99.9 8.7E-27 3E-31 164.0 12.1 147 3-161 18-167 (172)
73 1ky3_A GTP-binding protein YPT 99.9 1.3E-26 4.5E-31 164.6 13.1 149 3-161 23-178 (182)
74 3t1o_A Gliding protein MGLA; G 99.9 2.2E-27 7.4E-32 170.8 8.4 145 4-162 30-193 (198)
75 2ce2_X GTPase HRAS; signaling 99.9 6.4E-26 2.2E-30 158.4 15.1 146 3-161 18-165 (166)
76 3cph_A RAS-related protein SEC 99.9 4.6E-26 1.6E-30 166.1 14.5 146 3-161 35-182 (213)
77 2cjw_A GTP-binding protein GEM 99.9 2.8E-26 9.6E-31 165.5 13.1 147 3-161 21-172 (192)
78 3l0i_B RAS-related protein RAB 99.9 2.1E-27 7.1E-32 172.1 5.6 147 3-161 48-196 (199)
79 3clv_A RAB5 protein, putative; 99.9 1.7E-25 5.7E-30 161.5 15.2 145 3-161 22-204 (208)
80 3gj0_A GTP-binding nuclear pro 99.9 1.5E-26 5.2E-31 170.1 9.2 147 3-163 30-177 (221)
81 3th5_A RAS-related C3 botulinu 99.9 4.8E-28 1.6E-32 175.9 0.0 158 3-160 45-204 (204)
82 4bas_A ADP-ribosylation factor 99.9 1E-25 3.6E-30 162.5 11.7 149 3-163 32-191 (199)
83 4djt_A GTP-binding nuclear pro 99.9 2.5E-25 8.5E-30 163.0 12.3 150 3-164 26-178 (218)
84 1f6b_A SAR1; gtpases, N-termin 99.9 6.3E-25 2.2E-29 159.1 12.4 140 3-159 40-197 (198)
85 1m2o_B GTP-binding protein SAR 99.9 2.9E-24 1E-28 154.5 14.2 138 3-158 38-189 (190)
86 1r8s_A ADP-ribosylation factor 99.9 2.9E-25 1E-29 155.4 7.5 141 3-161 15-162 (164)
87 1zj6_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 153.5 12.7 144 3-164 31-181 (187)
88 1upt_A ARL1, ADP-ribosylation 99.9 5.4E-24 1.8E-28 149.8 12.3 147 3-162 22-170 (171)
89 2h57_A ADP-ribosylation factor 99.9 9.4E-24 3.2E-28 151.5 13.2 141 3-160 36-186 (190)
90 1zd9_A ADP-ribosylation factor 99.9 1.5E-24 5.2E-29 155.6 8.2 142 3-161 37-185 (188)
91 1ksh_A ARF-like protein 2; sma 99.9 2.1E-23 7.1E-28 149.1 14.1 142 3-162 33-181 (186)
92 1u0l_A Probable GTPase ENGC; p 99.9 2E-24 6.8E-29 166.1 9.2 134 3-157 32-169 (301)
93 2b6h_A ADP-ribosylation factor 99.9 1.3E-24 4.6E-29 156.6 7.8 141 3-161 44-191 (192)
94 3r7w_B Gtpase2, GTP-binding pr 99.9 3.6E-25 1.2E-29 170.6 5.0 154 3-166 14-179 (331)
95 2h17_A ADP-ribosylation factor 99.9 8.3E-24 2.8E-28 150.8 11.7 138 3-158 36-180 (181)
96 2x77_A ADP-ribosylation factor 99.9 4E-24 1.4E-28 153.2 9.7 141 3-161 37-184 (189)
97 2zej_A Dardarin, leucine-rich 99.9 5.6E-25 1.9E-29 157.4 4.9 149 3-162 17-179 (184)
98 1fzq_A ADP-ribosylation factor 99.9 8.9E-24 3E-28 150.9 11.2 141 3-161 31-178 (181)
99 3llu_A RAS-related GTP-binding 99.9 6E-24 2.1E-28 153.5 9.4 148 4-160 36-196 (196)
100 2f9l_A RAB11B, member RAS onco 99.9 1.2E-22 4E-27 147.0 16.1 147 3-161 20-168 (199)
101 1oix_A RAS-related protein RAB 99.9 2.7E-22 9.2E-27 144.4 15.9 145 3-159 44-190 (191)
102 1moz_A ARL1, ADP-ribosylation 99.9 3.5E-23 1.2E-27 147.3 10.7 140 3-160 33-179 (183)
103 2xtz_A Guanine nucleotide-bind 99.9 5.2E-24 1.8E-28 166.7 6.5 150 11-161 144-345 (354)
104 3c5h_A Glucocorticoid receptor 99.9 9.2E-24 3.1E-28 158.8 7.4 144 3-160 43-254 (255)
105 1cip_A Protein (guanine nucleo 99.9 8.3E-23 2.9E-27 159.8 11.1 146 12-161 161-344 (353)
106 2fh5_B SR-beta, signal recogni 99.9 1E-22 3.4E-27 148.7 9.8 146 3-159 22-214 (214)
107 3ohm_A Guanine nucleotide-bind 99.9 8.6E-23 2.9E-27 157.9 9.2 152 6-162 133-319 (327)
108 1azs_C GS-alpha; complex (lyas 99.9 8.5E-23 2.9E-27 161.7 8.6 148 12-163 185-387 (402)
109 2lkc_A Translation initiation 99.9 1.3E-21 4.5E-26 138.4 13.1 140 3-161 23-171 (178)
110 3o47_A ADP-ribosylation factor 99.9 6.7E-22 2.3E-26 153.7 11.6 142 3-161 180-327 (329)
111 1zcb_A G alpha I/13; GTP-bindi 99.9 9.2E-22 3.1E-26 154.4 11.6 146 12-161 169-353 (362)
112 3r7w_A Gtpase1, GTP-binding pr 99.9 9.7E-22 3.3E-26 151.5 10.2 150 3-164 18-184 (307)
113 4fid_A G protein alpha subunit 99.9 1.4E-21 4.8E-26 151.6 8.6 152 6-161 127-328 (340)
114 3lvq_E ARF-GAP with SH3 domain 99.9 8.6E-21 2.9E-25 154.8 13.6 141 3-163 337-486 (497)
115 2wji_A Ferrous iron transport 99.8 7E-21 2.4E-25 133.8 9.5 137 3-159 18-163 (165)
116 3dpu_A RAB family protein; roc 99.8 3E-21 1E-25 158.9 6.3 146 3-163 56-210 (535)
117 2qu8_A Putative nucleolar GTP- 99.8 5E-20 1.7E-24 135.9 9.9 147 3-163 44-207 (228)
118 2cxx_A Probable GTP-binding pr 99.8 1.9E-20 6.6E-25 133.7 5.0 142 3-162 16-185 (190)
119 2dyk_A GTP-binding protein; GT 99.8 1.4E-19 4.7E-24 125.9 8.3 136 3-159 16-160 (161)
120 1svi_A GTP-binding protein YSX 99.8 1.6E-19 5.4E-24 129.6 7.8 140 3-160 38-194 (195)
121 2wjg_A FEOB, ferrous iron tran 99.8 1.7E-19 6E-24 128.7 7.4 141 3-163 22-171 (188)
122 2gj8_A MNME, tRNA modification 99.8 7.1E-20 2.4E-24 129.6 4.1 136 3-160 19-165 (172)
123 3pqc_A Probable GTP-binding pr 99.8 6.7E-19 2.3E-23 126.0 7.6 143 3-161 38-194 (195)
124 3iev_A GTP-binding protein ERA 99.8 1.7E-17 5.8E-22 127.8 13.6 145 3-161 25-182 (308)
125 3a1s_A Iron(II) transport prot 99.7 1.1E-17 3.7E-22 125.9 10.0 138 3-160 20-166 (258)
126 4dcu_A GTP-binding protein ENG 99.7 7E-18 2.4E-22 136.4 6.8 142 3-160 210-368 (456)
127 3b1v_A Ferrous iron uptake tra 99.7 7.6E-18 2.6E-22 127.6 6.1 137 3-160 18-163 (272)
128 3gee_A MNME, tRNA modification 99.7 5.5E-17 1.9E-21 131.5 11.5 138 3-160 248-397 (476)
129 1nrj_B SR-beta, signal recogni 99.7 1.2E-18 3.9E-23 127.4 1.4 125 3-147 27-170 (218)
130 3iby_A Ferrous iron transport 99.7 1E-17 3.4E-22 125.9 5.2 136 3-158 16-164 (256)
131 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.6E-22 134.6 5.6 142 3-160 190-348 (436)
132 4dhe_A Probable GTP-binding pr 99.7 2.9E-17 9.8E-22 120.3 7.3 149 3-163 44-213 (223)
133 1wf3_A GTP-binding protein; GT 99.7 9.4E-17 3.2E-21 123.2 10.2 140 3-160 22-172 (301)
134 1mky_A Probable GTP-binding pr 99.7 1.8E-16 6.2E-21 127.6 9.8 138 3-160 16-165 (439)
135 3qq5_A Small GTP-binding prote 99.7 4.2E-17 1.4E-21 130.3 6.0 140 3-162 49-197 (423)
136 2yv5_A YJEQ protein; hydrolase 99.7 8.6E-16 2.9E-20 118.0 12.8 131 8-157 33-165 (302)
137 3k53_A Ferrous iron transport 99.7 1.7E-16 5.9E-21 120.0 8.4 141 3-162 18-167 (271)
138 1xzp_A Probable tRNA modificat 99.7 4.1E-16 1.4E-20 126.5 10.6 136 3-160 258-404 (482)
139 3i8s_A Ferrous iron transport 99.7 2.9E-17 9.9E-22 124.6 3.6 140 3-162 18-170 (274)
140 2e87_A Hypothetical protein PH 99.6 3.3E-15 1.1E-19 117.2 11.7 112 36-161 214-336 (357)
141 3cb4_D GTP-binding protein LEP 99.6 3.1E-15 1.1E-19 124.1 10.5 115 32-162 67-183 (599)
142 3izy_P Translation initiation 99.6 2.9E-17 9.8E-22 134.5 -2.0 144 3-160 19-167 (537)
143 2ywe_A GTP-binding protein LEP 99.6 5.3E-15 1.8E-19 122.6 10.8 115 32-162 69-185 (600)
144 1s0u_A EIF-2-gamma, translatio 99.6 1.3E-14 4.3E-19 115.8 12.0 114 35-162 80-199 (408)
145 3sjy_A Translation initiation 99.6 7E-15 2.4E-19 117.1 10.3 118 35-162 74-193 (403)
146 1lnz_A SPO0B-associated GTP-bi 99.6 1.6E-15 5.6E-20 118.1 6.3 113 36-163 206-332 (342)
147 3geh_A MNME, tRNA modification 99.6 3.1E-15 1.1E-19 120.8 8.1 137 3-162 239-385 (462)
148 2hjg_A GTP-binding protein ENG 99.5 3.6E-16 1.2E-20 125.7 -0.8 136 4-161 19-165 (436)
149 2qag_A Septin-2, protein NEDD5 99.5 7.5E-16 2.5E-20 121.0 0.7 143 4-161 53-233 (361)
150 1wb1_A Translation elongation 99.5 1.5E-14 5.2E-19 117.5 8.1 115 29-160 68-188 (482)
151 1kk1_A EIF2gamma; initiation o 99.5 3.7E-14 1.3E-18 113.2 10.0 114 35-162 82-201 (410)
152 2ged_A SR-beta, signal recogni 99.5 7E-15 2.4E-19 105.1 4.3 97 3-108 63-172 (193)
153 2xtp_A GTPase IMAP family memb 99.5 5E-14 1.7E-18 105.6 9.1 146 3-161 37-208 (260)
154 1mky_A Probable GTP-binding pr 99.5 1.2E-13 4.2E-18 111.0 11.6 141 4-160 196-354 (439)
155 3l82_B F-box only protein 4; T 99.5 5.2E-15 1.8E-19 106.7 2.9 106 43-161 109-223 (227)
156 3p26_A Elongation factor 1 alp 99.5 8.5E-15 2.9E-19 119.1 4.3 109 31-150 106-227 (483)
157 1zo1_I IF2, translation initia 99.5 7.2E-16 2.5E-20 125.3 -2.7 140 4-158 20-164 (501)
158 1ega_A Protein (GTP-binding pr 99.5 2.3E-13 7.7E-18 104.4 11.4 110 36-160 56-174 (301)
159 3tr5_A RF-3, peptide chain rel 99.5 1.7E-13 5.9E-18 112.3 10.8 68 35-106 81-148 (528)
160 1g7s_A Translation initiation 99.5 7.6E-13 2.6E-17 109.8 14.4 117 37-160 71-217 (594)
161 2qtf_A Protein HFLX, GTP-bindi 99.5 3.9E-13 1.3E-17 105.6 11.6 145 4-161 195-354 (364)
162 2c78_A Elongation factor TU-A; 99.5 7.1E-14 2.4E-18 111.3 6.8 121 29-160 68-211 (405)
163 3j2k_7 ERF3, eukaryotic polype 99.4 4.7E-13 1.6E-17 107.6 10.4 112 35-153 94-217 (439)
164 1d2e_A Elongation factor TU (E 99.4 1.4E-13 4.9E-18 109.3 6.8 120 31-161 61-195 (397)
165 1jny_A EF-1-alpha, elongation 99.4 3.7E-14 1.3E-18 114.0 2.9 115 33-153 81-205 (435)
166 1zun_B Sulfate adenylate trans 99.4 1.8E-13 6.1E-18 109.9 6.2 109 34-151 102-214 (434)
167 1r5b_A Eukaryotic peptide chai 99.4 9.3E-14 3.2E-18 112.5 4.2 112 36-152 121-243 (467)
168 3t5d_A Septin-7; GTP-binding p 99.4 5.5E-14 1.9E-18 106.4 2.5 142 4-159 24-202 (274)
169 2elf_A Protein translation elo 99.4 4.3E-13 1.5E-17 105.6 7.1 110 35-160 59-179 (370)
170 4dcu_A GTP-binding protein ENG 99.4 2.7E-14 9.3E-19 115.4 0.1 137 4-160 39-184 (456)
171 3avx_A Elongation factor TS, e 99.4 4.9E-13 1.7E-17 116.8 7.7 122 29-161 352-486 (1289)
172 3lxx_A GTPase IMAP family memb 99.4 1.5E-12 5.2E-17 96.4 9.1 147 3-161 44-214 (239)
173 3l2o_B F-box only protein 4; s 99.4 2.4E-13 8.3E-18 102.4 4.1 107 43-162 194-309 (312)
174 1f60_A Elongation factor EEF1A 99.3 1.6E-12 5.5E-17 105.0 7.7 110 32-151 81-202 (458)
175 2dy1_A Elongation factor G; tr 99.3 2.7E-12 9.1E-17 108.0 8.9 71 31-105 69-139 (665)
176 1pui_A ENGB, probable GTP-bind 99.3 3.4E-12 1.2E-16 92.3 7.2 143 4-161 42-199 (210)
177 3izq_1 HBS1P, elongation facto 99.3 3.5E-12 1.2E-16 106.3 7.2 110 34-151 243-362 (611)
178 3lxw_A GTPase IMAP family memb 99.3 1.3E-11 4.6E-16 92.0 8.5 146 3-161 36-208 (247)
179 2aka_B Dynamin-1; fusion prote 99.3 9.4E-13 3.2E-17 100.4 1.4 110 36-158 125-250 (299)
180 3mca_A HBS1, elongation factor 99.2 6E-13 2.1E-17 110.6 -0.4 102 35-149 254-371 (592)
181 3def_A T7I23.11 protein; chlor 99.2 1.6E-11 5.4E-16 92.3 7.2 101 3-106 51-165 (262)
182 2h5e_A Peptide chain release f 99.2 9.3E-11 3.2E-15 96.2 10.9 70 34-107 80-149 (529)
183 2rdo_7 EF-G, elongation factor 99.2 2E-10 6.7E-15 97.3 10.6 71 33-107 79-149 (704)
184 1dar_A EF-G, elongation factor 99.1 3.3E-10 1.1E-14 95.7 10.6 68 36-107 77-144 (691)
185 3h2y_A GTPase family protein; 99.1 8.3E-11 2.9E-15 92.5 6.6 98 45-159 55-158 (368)
186 2qnr_A Septin-2, protein NEDD5 99.1 8.1E-12 2.8E-16 95.8 0.5 117 32-162 72-215 (301)
187 1h65_A Chloroplast outer envel 99.1 5.9E-10 2E-14 83.9 9.7 102 3-107 54-169 (270)
188 2xex_A Elongation factor G; GT 99.1 1.1E-09 3.8E-14 92.6 11.7 73 29-107 70-142 (693)
189 2j69_A Bacterial dynamin-like 99.1 1.8E-10 6.1E-15 97.4 6.8 118 37-162 175-326 (695)
190 2qag_C Septin-7; cell cycle, c 99.0 2.9E-10 9.9E-15 90.7 6.4 114 32-159 84-225 (418)
191 1udx_A The GTP-binding protein 99.0 3E-09 1E-13 84.8 11.2 113 36-163 205-327 (416)
192 3ec1_A YQEH GTPase; atnos1, at 99.0 2.8E-10 9.4E-15 89.6 5.1 99 44-159 56-160 (369)
193 3t34_A Dynamin-related protein 99.0 5.7E-11 1.9E-15 93.1 0.7 106 36-155 136-255 (360)
194 2hf9_A Probable hydrogenase ni 99.0 1.3E-12 4.4E-17 95.7 -9.3 59 92-160 164-223 (226)
195 1yrb_A ATP(GTP)binding protein 99.0 2.2E-09 7.5E-14 80.1 8.1 114 36-160 109-256 (262)
196 2wsm_A Hydrogenase expression/ 98.9 3.8E-09 1.3E-13 76.8 8.2 105 36-161 109-214 (221)
197 1jwy_B Dynamin A GTPase domain 98.9 9.3E-10 3.2E-14 84.4 4.4 112 36-161 131-262 (315)
198 1n0u_A EF-2, elongation factor 98.9 1.1E-09 3.7E-14 94.4 4.8 71 32-106 94-164 (842)
199 3p32_A Probable GTPase RV1496/ 98.8 4.2E-09 1.4E-13 82.4 5.9 103 36-160 172-283 (355)
200 3vqt_A RF-3, peptide chain rel 98.8 5.6E-08 1.9E-12 80.1 11.2 73 29-107 95-167 (548)
201 1wxq_A GTP-binding protein; st 98.8 1.4E-08 4.7E-13 80.6 6.8 38 35-72 70-114 (397)
202 1puj_A YLQF, conserved hypothe 98.7 1.7E-08 5.7E-13 76.6 5.6 100 40-160 3-105 (282)
203 2x2e_A Dynamin-1; nitration, h 98.7 4.9E-10 1.7E-14 87.6 -3.5 109 36-157 130-254 (353)
204 1jal_A YCHF protein; nucleotid 98.6 6.7E-07 2.3E-11 70.0 12.5 36 36-71 66-108 (363)
205 2p67_A LAO/AO transport system 98.6 2.2E-08 7.7E-13 77.9 4.2 104 36-160 149-260 (341)
206 1t9h_A YLOQ, probable GTPase E 98.6 7.6E-08 2.6E-12 73.7 5.5 128 9-153 40-169 (307)
207 2www_A Methylmalonic aciduria 98.5 3.4E-07 1.2E-11 71.4 8.6 102 36-159 167-277 (349)
208 2qpt_A EH domain-containing pr 98.5 6.7E-08 2.3E-12 79.7 3.7 67 37-106 155-232 (550)
209 4fn5_A EF-G 1, elongation fact 98.4 1.1E-06 3.6E-11 74.7 10.0 69 34-106 83-151 (709)
210 3j25_A Tetracycline resistance 98.4 1.3E-07 4.4E-12 79.3 3.9 70 34-107 65-134 (638)
211 2dby_A GTP-binding protein; GD 98.2 2.9E-05 9.8E-10 60.9 12.1 52 92-151 201-252 (368)
212 3zvr_A Dynamin-1; hydrolase, D 98.1 3.6E-07 1.2E-11 77.6 0.2 106 37-157 151-274 (772)
213 3cnl_A YLQF, putative uncharac 98.1 2.4E-06 8.3E-11 64.0 3.7 93 43-157 4-97 (262)
214 2rcn_A Probable GTPase ENGC; Y 98.0 5.6E-05 1.9E-09 59.0 10.8 83 56-155 127-213 (358)
215 2qm8_A GTPase/ATPase; G protei 98.0 2.3E-05 8E-10 60.7 8.0 103 36-159 148-259 (337)
216 4a9a_A Ribosome-interacting GT 97.2 0.0058 2E-07 48.0 11.6 104 27-134 112-222 (376)
217 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00023 7.9E-09 56.2 0.5 39 36-74 86-131 (396)
218 2j37_W Signal recognition part 95.6 0.0083 2.8E-07 48.9 3.7 102 36-158 184-310 (504)
219 4dzz_A Plasmid partitioning pr 91.7 0.28 9.6E-06 34.2 5.0 65 36-105 76-143 (206)
220 3dm5_A SRP54, signal recogniti 88.6 0.61 2.1E-05 37.3 4.9 91 36-149 183-279 (443)
221 3k9g_A PF-32 protein; ssgcid, 86.1 1.5 5.2E-05 31.9 5.6 65 36-104 145-209 (267)
222 3ec1_A YQEH GTPase; atnos1, at 84.5 0.068 2.3E-06 41.7 -2.5 67 38-108 214-290 (369)
223 3cwq_A Para family chromosome 84.3 5.4 0.00018 28.0 7.6 65 36-105 68-133 (209)
224 3ea0_A ATPase, para family; al 83.8 9.4 0.00032 27.0 9.4 67 35-105 118-185 (245)
225 1ni3_A YCHF GTPase, YCHF GTP-b 82.5 0.95 3.2E-05 35.6 3.3 36 36-71 85-127 (392)
226 1j8m_F SRP54, signal recogniti 82.3 4.9 0.00017 30.1 7.0 90 36-149 181-279 (297)
227 3end_A Light-independent proto 80.1 11 0.00038 27.9 8.4 66 36-104 157-225 (307)
228 2v3c_C SRP54, signal recogniti 79.5 13 0.00046 29.4 9.0 63 36-105 181-251 (432)
229 3h2y_A GTPase family protein; 77.6 0.37 1.3E-05 37.5 -0.5 67 38-108 213-289 (368)
230 3kl4_A SRP54, signal recogniti 76.2 11 0.00036 30.1 7.5 90 36-148 180-277 (433)
231 1wcv_1 SOJ, segregation protei 76.0 9.6 0.00033 27.4 6.8 67 35-105 111-182 (257)
232 2ph1_A Nucleotide-binding prot 76.0 4 0.00014 29.7 4.7 66 35-104 128-194 (262)
233 3kjh_A CO dehydrogenase/acetyl 75.7 8.2 0.00028 27.3 6.3 65 35-104 131-195 (254)
234 3q9l_A Septum site-determining 74.1 5.8 0.0002 28.4 5.2 67 35-105 113-186 (260)
235 1tq4_A IIGP1, interferon-induc 72.0 23 0.0008 27.9 8.5 118 37-160 121-252 (413)
236 2qag_B Septin-6, protein NEDD5 71.0 9 0.00031 30.4 5.9 40 62-106 151-190 (427)
237 3sop_A Neuronal-specific septi 69.4 14 0.00047 27.2 6.3 44 58-106 110-154 (270)
238 4a9a_A Ribosome-interacting GT 66.3 17 0.00057 28.3 6.5 50 92-159 249-298 (376)
239 1g3q_A MIND ATPase, cell divis 63.5 13 0.00045 26.1 5.1 65 36-105 112-176 (237)
240 1hyq_A MIND, cell division inh 56.2 12 0.00042 26.8 3.9 65 36-105 111-175 (263)
241 3bfv_A CAPA1, CAPB2, membrane 54.7 13 0.00045 27.2 3.9 64 36-104 192-256 (271)
242 3szr_A Interferon-induced GTP- 54.0 4.7 0.00016 33.5 1.4 68 37-107 148-229 (608)
243 4hhu_A OR280; engineered prote 50.1 41 0.0014 21.5 5.0 65 27-91 34-113 (170)
244 1bif_A 6-phosphofructo-2-kinas 50.1 3.4 0.00011 33.1 -0.0 59 37-99 88-156 (469)
245 3la6_A Tyrosine-protein kinase 46.4 32 0.0011 25.4 4.9 66 36-105 202-267 (286)
246 2xj4_A MIPZ; replication, cell 45.3 6.1 0.00021 29.1 0.8 66 36-105 104-191 (286)
247 4hhu_A OR280; engineered prote 38.2 76 0.0026 20.3 4.9 69 62-134 3-71 (170)
248 3rl5_A Metallophosphoesterase 36.8 42 0.0014 25.1 4.2 61 37-104 62-122 (296)
249 3cio_A ETK, tyrosine-protein k 32.6 45 0.0015 24.7 3.8 65 36-105 214-279 (299)
250 3do6_A Formate--tetrahydrofola 31.7 1.4E+02 0.0047 24.3 6.5 68 76-159 347-416 (543)
251 1ni3_A YCHF GTPase, YCHF GTP-b 31.4 55 0.0019 25.5 4.2 59 92-159 224-305 (392)
252 2xxa_A Signal recognition part 30.3 64 0.0022 25.5 4.5 63 36-105 184-253 (433)
253 2afh_E Nitrogenase iron protei 30.2 1.5E+02 0.0052 21.3 8.7 68 35-104 118-189 (289)
254 1uf3_A Hypothetical protein TT 29.2 55 0.0019 22.3 3.7 60 38-101 9-73 (228)
255 2oze_A ORF delta'; para, walke 28.9 1E+02 0.0035 22.3 5.2 66 36-105 155-225 (298)
256 2ffh_A Protein (FFH); SRP54, s 27.1 2.2E+02 0.0075 22.4 7.0 84 36-141 181-271 (425)
257 3ez9_A Para; DNA binding, wing 25.0 1.1E+02 0.0038 23.4 5.0 66 36-104 248-322 (403)
258 4dad_A Putative pilus assembly 24.5 1.3E+02 0.0044 18.5 4.9 41 58-103 66-106 (146)
259 2pd2_A Hypothetical protein ST 23.9 1.2E+02 0.0043 18.1 4.7 37 65-102 3-39 (108)
260 3e70_C DPA, signal recognition 23.8 1.3E+02 0.0043 22.7 5.0 90 38-150 214-309 (328)
261 1qkk_A DCTD, C4-dicarboxylate 23.5 1.1E+02 0.0037 19.2 4.1 40 59-103 47-86 (155)
262 2yvt_A Hypothetical protein AQ 23.3 89 0.003 21.9 3.9 37 38-74 9-47 (260)
263 3f6c_A Positive transcription 23.2 1E+02 0.0035 18.6 3.9 41 59-104 46-86 (134)
264 3ezx_A MMCP 1, monomethylamine 22.3 1.2E+02 0.0041 21.2 4.3 43 58-101 142-186 (215)
265 2ark_A Flavodoxin; FMN, struct 21.6 1.7E+02 0.0058 19.5 4.9 60 36-102 35-98 (188)
266 3u5c_H RP30, RP40, 40S ribosom 21.5 1.8E+02 0.0061 20.2 4.8 45 62-106 57-101 (190)
267 2xzm_U Ribosomal protein L7AE 21.3 89 0.0031 20.0 3.2 40 59-104 40-79 (126)
268 3h5i_A Response regulator/sens 21.2 95 0.0032 19.1 3.4 40 59-104 50-90 (140)
269 3cg0_A Response regulator rece 20.9 97 0.0033 18.9 3.4 39 59-103 54-93 (140)
270 3jte_A Response regulator rece 20.4 1.6E+02 0.0054 18.0 6.9 40 59-103 49-88 (143)
271 3snk_A Response regulator CHEY 20.4 1.4E+02 0.0047 18.2 4.0 41 58-103 58-98 (135)
272 2rjn_A Response regulator rece 20.3 1.2E+02 0.0041 19.0 3.8 40 59-103 51-90 (154)
273 3pzx_A Formate--tetrahydrofola 20.2 88 0.003 25.6 3.4 66 80-160 364-429 (557)
274 2rdm_A Response regulator rece 20.1 1.5E+02 0.0052 17.7 4.7 41 59-104 50-91 (132)
275 2fz5_A Flavodoxin; alpha/beta 20.1 95 0.0033 19.2 3.2 68 56-138 43-112 (137)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.2e-38 Score=232.37 Aligned_cols=147 Identities=29% Similarity=0.474 Sum_probs=125.4
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.||+++.|.++|.||+|..+ .+.+..++..+.++||||+|+++|..+++.|+++++++++|||++++.||+++ ..
T Consensus 28 sLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i-~~ 106 (216)
T 4dkx_A 28 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TK 106 (216)
T ss_dssp HHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHH-HH
Confidence 58899999999999999999554 58888899999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... +++|++|||||+|+.+++ .++.+++.++++.+++ .|+||||++|.||+++|+.|++.+.
T Consensus 107 ~~~~i~~~~~~~~piilVgNK~Dl~~~r----------~V~~~e~~~~a~~~~~-~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 107 WIDDVRTERGSDVIIMLVGNKTDLADKR----------QVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHTTSSEEEEEEECTTCGGGC----------CSCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCCeEEEEeeccchHhcC----------cccHHHHhhHHHHhCC-eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 988887665 689999999999997755 4999999999999998 8999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 176 ~ 176 (216)
T 4dkx_A 176 G 176 (216)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6e-32 Score=197.61 Aligned_cols=175 Identities=71% Similarity=1.107 Sum_probs=135.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+++.||+++.+...+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|+.+...|
T Consensus 24 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~ 103 (212)
T 2j0v_A 24 CMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKW 103 (212)
T ss_dssp HHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888888888999999999999999999999999999999999999999999999985589
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
+..+....++.|++||+||+|+..+..... .....++.+++..+++.++...++++||++|.|++++|+++++.+.+.
T Consensus 104 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 104 MPELRRFAPNVPIVLVGTKLDLRDDKGYLA--DHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHCTTCCEEEEEECHHHHTCHHHHH--TCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCCEEEEEeCHHhhhCccccc--cccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 999988777899999999999976432000 011134778889999999976899999999999999999999999876
Q ss_pred chhhh----hccCCCCCcccC
Q 030337 163 PKQKK----KKKKSHRACSIL 179 (179)
Q Consensus 163 ~~~~~----~~~~~~~~c~~~ 179 (179)
..+++ +.+++.++|.|+
T Consensus 182 ~~~~~~~~~~~~~~~~~c~~~ 202 (212)
T 2j0v_A 182 PRRKEVPRRRKNHRRSGCSIA 202 (212)
T ss_dssp ---------------------
T ss_pred hhhcccccccccccCCCcEEe
Confidence 55443 233334567764
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=4.7e-30 Score=188.33 Aligned_cols=163 Identities=31% Similarity=0.611 Sum_probs=137.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+.+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+...|
T Consensus 42 sL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 121 (214)
T 3q3j_B 42 AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW 121 (214)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHH
T ss_pred HHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHH
Confidence 57899999999999999999988888888899999999999999999999999999999999999999999999944899
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCc-HHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN-VKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-i~~~f~~l~~~i 159 (179)
+..+....+++|++|||||+|+..+.... ......+.++.+++..+++.+++..++++||++|.| |+++|+++++.+
T Consensus 122 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 122 RTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 99999888889999999999997631000 000112358889999999999987899999999998 999999999999
Q ss_pred hCCchh
Q 030337 160 LQPPKQ 165 (179)
Q Consensus 160 ~~~~~~ 165 (179)
......
T Consensus 202 ~~~~~~ 207 (214)
T 3q3j_B 202 LNKPSP 207 (214)
T ss_dssp HC----
T ss_pred hccCcC
Confidence 876543
No 4
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=4.6e-30 Score=183.72 Aligned_cols=164 Identities=32% Similarity=0.530 Sum_probs=133.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||.++.+...+.+++..+.+++|||||++.+..++..++++++++++|||++++.+++.+ ..|
T Consensus 19 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 97 (189)
T 4dsu_A 19 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHY 97 (189)
T ss_dssp HHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+.... +..+.+..+++.+++ +++++||++|.|++++|+++++.+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88887654 489999999999997533 677889999999998 8999999999999999999999887
Q ss_pred CCchhh-----hhccCCCCCcccC
Q 030337 161 QPPKQK-----KKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~~~~-----~~~~~~~~~c~~~ 179 (179)
...... +++++++.+|+||
T Consensus 166 ~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 166 KHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp HHHHHHHHCSSTTCCC--------
T ss_pred HhhhhcccccccccccccceeeeC
Confidence 544332 2345555778886
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=2.2e-29 Score=181.62 Aligned_cols=153 Identities=38% Similarity=0.704 Sum_probs=139.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+.+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+...|
T Consensus 38 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 117 (194)
T 3reg_A 38 CLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW 117 (194)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999999888889999999999999999999999999999999999999999999999976789
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
+..+....++.|+++||||+|+..+. .+.+..+++..+++.+++..++++||++|.|++++|+++++.+...
T Consensus 118 ~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 118 EPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 99998877889999999999997532 2357889999999999995599999999999999999999998865
Q ss_pred c
Q 030337 163 P 163 (179)
Q Consensus 163 ~ 163 (179)
.
T Consensus 190 ~ 190 (194)
T 3reg_A 190 K 190 (194)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-29 Score=179.95 Aligned_cols=159 Identities=47% Similarity=0.862 Sum_probs=137.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+.+.+.+++..+.++||||+|++++..++..+++++|++++|||++++.+|+.+...|
T Consensus 33 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 112 (194)
T 2atx_A 33 CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 112 (194)
T ss_dssp HHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888888888888999999999999999999999999999999999999999999984489
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+....... ......+.++.+++.++++.++...++++||++|.|++++|+++++.++
T Consensus 113 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 113 VPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 99998877789999999999997642100 0001123577889999999999768999999999999999999999887
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 193 ~ 193 (194)
T 2atx_A 193 T 193 (194)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=184.03 Aligned_cols=161 Identities=24% Similarity=0.406 Sum_probs=129.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||++..+...+.+++..+.+.||||+|++.+..++..++++++++++|||++++.+|+.+ ..|
T Consensus 39 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 117 (201)
T 3oes_A 39 SLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESL 117 (201)
T ss_dssp HHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHH-HHH
Confidence 4788999999999999999988877777788889999999999999999999999999999999999999999999 789
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .++|+++|+||+|+..... +..+++..+++..++ .++++||++|.|++++|++|++.+.
T Consensus 118 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 118 YQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88887664 4799999999999976553 788899999999998 9999999999999999999999887
Q ss_pred CCchhhhhccCCCCCcccC
Q 030337 161 QPPKQKKKKKKSHRACSIL 179 (179)
Q Consensus 161 ~~~~~~~~~~~~~~~c~~~ 179 (179)
+..... .++.+|.||
T Consensus 187 ~~~~~~----~~~~~c~l~ 201 (201)
T 3oes_A 187 RVENSY----GQERRCHLM 201 (201)
T ss_dssp HC-----------------
T ss_pred hhhhhh----ccccccccC
Confidence 554332 234458876
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.5e-29 Score=180.52 Aligned_cols=151 Identities=25% Similarity=0.494 Sum_probs=109.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. +.+.+++..+.++||||+|++++..++..+++++|++|+|||++++.+|+.+ ..
T Consensus 23 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 101 (183)
T 2fu5_C 23 CVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RN 101 (183)
T ss_dssp -------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HH
Confidence 588999999999999999986664 7788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+.+.. .++.+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 102 WIRNIEEHASADVEKMILGNKCDVNDKR----------QVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHSCTTCEEEEEEEC--CCSCC----------CSCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECccCCccC----------cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998888765 579999999999997644 3778889999999998 8999999999999999999999887
Q ss_pred CCchh
Q 030337 161 QPPKQ 165 (179)
Q Consensus 161 ~~~~~ 165 (179)
....+
T Consensus 171 ~~~~~ 175 (183)
T 2fu5_C 171 AKMDK 175 (183)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 54433
No 9
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=7.4e-29 Score=176.66 Aligned_cols=152 Identities=28% Similarity=0.357 Sum_probs=134.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+.+++..+.+++|||+|++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 99 (181)
T 3t5g_A 21 SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVI 99 (181)
T ss_dssp HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999999 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+.... .++.+++..+++.+++ .++++||++|.|++++|+++++.+.
T Consensus 100 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 100 HGKLLDMVGKVQIPIMLVGNKKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp HHHHHHHC----CCEEEEEECTTCTTTC----------CSCHHHHHHHHHHTTC-EEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhcc----------eecHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 88886654 479999999999997654 3888999999999998 8999999999999999999999998
Q ss_pred CCchhh
Q 030337 161 QPPKQK 166 (179)
Q Consensus 161 ~~~~~~ 166 (179)
......
T Consensus 169 ~~~~~~ 174 (181)
T 3t5g_A 169 KMDGAC 174 (181)
T ss_dssp TC----
T ss_pred HhcCCc
Confidence 765443
No 10
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=5.6e-29 Score=177.63 Aligned_cols=163 Identities=57% Similarity=0.925 Sum_probs=138.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+++.||+++.+...+.+++..+.+++|||+|++++..++..+++++|++++|||++++.+++.+...|
T Consensus 20 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 99 (186)
T 1mh1_A 20 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 99 (186)
T ss_dssp HHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHH
Confidence 47889999999999999999888888889999999999999999999999999999999999999999999999984479
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+.+..... ......+.++.+++..+++..+..+++++||++|.|++++|+++.+.+.
T Consensus 100 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 100 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 99998877789999999999997532100 0000113467788899999998768999999999999999999999998
Q ss_pred CCchh
Q 030337 161 QPPKQ 165 (179)
Q Consensus 161 ~~~~~ 165 (179)
+++.+
T Consensus 180 ~~~~~ 184 (186)
T 1mh1_A 180 CPPPV 184 (186)
T ss_dssp CCCC-
T ss_pred ccccc
Confidence 76543
No 11
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=182.09 Aligned_cols=147 Identities=30% Similarity=0.501 Sum_probs=133.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+...+.+++..+.+.||||+|++.+..++..++++++++++|||++++.+++.+ ..|
T Consensus 29 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 107 (206)
T 2bov_A 29 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADF 107 (206)
T ss_dssp HHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888899999999999999999999999999999999999999999999998 789
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+..... ++.+++..+++.+++ +++++||++|.|++++|+++++.+.
T Consensus 108 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 108 REQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88888765 3899999999999976543 778889999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 177 ~ 177 (206)
T 2bov_A 177 A 177 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=180.93 Aligned_cols=159 Identities=45% Similarity=0.776 Sum_probs=129.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||+++.+...+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.+|+.+...|
T Consensus 35 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 114 (201)
T 2q3h_A 35 SLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW 114 (201)
T ss_dssp HHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888888889999999999999999999999999999999999999999999999984489
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+....... ......+.+..+++..+++.++...++++||++|.|++++|+++++.+.
T Consensus 115 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 115 VPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99998877789999999999997532100 0000123477888999999998778999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 195 ~ 195 (201)
T 2q3h_A 195 Q 195 (201)
T ss_dssp H
T ss_pred c
Confidence 4
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=5.2e-29 Score=178.35 Aligned_cols=159 Identities=32% Similarity=0.663 Sum_probs=136.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.+|+.+...|
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 101 (184)
T 1m7b_A 22 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 101 (184)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888888888899999999999999999999999999999999999999999999986689
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC-CCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK-TQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~~i~~~f~~l~~~i 159 (179)
+..+....++.|+++||||+|+.++.... ......+.++.+++..+++.++...++++||+ ++.|++++|+.+++.+
T Consensus 102 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 102 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 99888877789999999999997531000 00012245788899999999885589999999 6899999999999988
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
+.
T Consensus 182 l~ 183 (184)
T 1m7b_A 182 VN 183 (184)
T ss_dssp HT
T ss_pred hc
Confidence 74
No 14
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=8.4e-29 Score=177.92 Aligned_cols=146 Identities=25% Similarity=0.367 Sum_probs=128.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+...+.+++..+.++||||+|++++..+ ..++++++++++|||++++.+|+.+ ..|
T Consensus 36 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~-~~~ 113 (187)
T 3c5c_A 36 ALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSS-SSY 113 (187)
T ss_dssp HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 57889999999999999999888888888999999999999999998875 6799999999999999999999999 789
Q ss_pred HHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEecc-CCCCcHHHHHHHHHH
Q 030337 83 IPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS-KTQQNVKAVFDAAIK 157 (179)
Q Consensus 83 ~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa-~~~~~i~~~f~~l~~ 157 (179)
+..+.... .+.|++|||||+|+..... ++.+++.++++.+++ .++++|| ++|.||+++|+++++
T Consensus 114 ~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 114 LELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEEeecCccccHHHHHHHHHH
Confidence 88887653 5899999999999976543 788899999999998 8999999 899999999999999
Q ss_pred HHhC
Q 030337 158 VVLQ 161 (179)
Q Consensus 158 ~i~~ 161 (179)
.+.+
T Consensus 183 ~i~~ 186 (187)
T 3c5c_A 183 EARR 186 (187)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8753
No 15
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=2.5e-29 Score=178.98 Aligned_cols=160 Identities=85% Similarity=1.320 Sum_probs=119.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+...+.+++..+.+++|||+|++++..++..+++++|++++|||++++.+++.+...|
T Consensus 23 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 102 (182)
T 3bwd_D 23 CLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW 102 (182)
T ss_dssp HHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888777777888899999999999999999999999999999999999999999984479
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
+..+....++.|+++|+||+|+.+.............++.+++.++++.++...++++||++|.|++++|+++++.++++
T Consensus 103 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 103 IPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 99998877789999999999997643200000111235778889999999976899999999999999999999988753
No 16
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.8e-29 Score=180.60 Aligned_cols=147 Identities=24% Similarity=0.390 Sum_probs=129.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+..++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+ ..|
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 101 (199)
T 2gf0_A 23 SLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPI 101 (199)
T ss_dssp HHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHH
T ss_pred HHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHH-HHH
Confidence 4788999999999999999988887788899999999999999999999999999999999999999999999988 667
Q ss_pred HHHHhhcC---CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+.... ++.|+++|+||+|+.... +..+.+..+++.+++ .++++||++|.|++++|+++++.+
T Consensus 102 ~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 102 YKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp HHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHH
Confidence 66665532 478999999999997532 677888889999998 899999999999999999999987
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
...
T Consensus 170 ~~~ 172 (199)
T 2gf0_A 170 TRR 172 (199)
T ss_dssp SSS
T ss_pred hhh
Confidence 654
No 17
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=180.13 Aligned_cols=161 Identities=41% Similarity=0.789 Sum_probs=116.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||+++.+...+.+++..+.++||||+|++.+..++..++++++++++|||++++.+|+.+...|
T Consensus 49 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 128 (214)
T 2j1l_A 49 SLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW 128 (214)
T ss_dssp HHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 47889999999999999999888888889999999999999999999999999999999999999999999999985589
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|++||+||+|+....... ......+.++.+++..+++..+...++++||++|.|++++|+++++.+.
T Consensus 129 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99998877789999999999997643100 0000112477788899999999778999999999999999999999887
Q ss_pred CCc
Q 030337 161 QPP 163 (179)
Q Consensus 161 ~~~ 163 (179)
+..
T Consensus 209 ~~~ 211 (214)
T 2j1l_A 209 SSR 211 (214)
T ss_dssp HC-
T ss_pred Hhh
Confidence 543
No 18
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=179.19 Aligned_cols=159 Identities=32% Similarity=0.663 Sum_probs=135.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+.+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+...|
T Consensus 43 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 122 (205)
T 1gwn_A 43 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122 (205)
T ss_dssp HHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 57889999999999999999888777888888999999999999999999999999999999999999999999986689
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC-CCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK-TQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~~i~~~f~~l~~~i 159 (179)
+..+....++.|++|||||+|+..+.... ......+.++.+++..+++.++...++++||+ ++.||+++|+.+++.+
T Consensus 123 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 99998877789999999999997531000 00012245788889999999885589999999 6899999999999987
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
+.
T Consensus 203 l~ 204 (205)
T 1gwn_A 203 VN 204 (205)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=179.23 Aligned_cols=148 Identities=26% Similarity=0.438 Sum_probs=124.3
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+ .+.+.+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+ ..
T Consensus 44 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~ 122 (201)
T 2hup_A 44 CVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PH 122 (201)
T ss_dssp HHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTH-HH
T ss_pred HHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HH
Confidence 47889999999999999998666 57788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|++||+||+|+..... ++.+++.++++..++..++++||++|.||+++|++|++.+.
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999888776 6899999999999976443 77888999999999768999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 193 ~ 193 (201)
T 2hup_A 193 M 193 (201)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1e-27 Score=174.03 Aligned_cols=159 Identities=45% Similarity=0.818 Sum_probs=136.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+.+++..+.++||||+|++++..++..+++++|++++|||++++.+++.+...|
T Consensus 40 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (201)
T 2gco_A 40 CLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119 (201)
T ss_dssp HHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888877888999999999999999999999999999999999999999999999986689
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+....... ......+.+..+++..+++..+...++++||++|.|++++|+++.+.++
T Consensus 120 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 120 TPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 98888877789999999999997642100 0001113477788899999998878999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 200 ~ 200 (201)
T 2gco_A 200 Q 200 (201)
T ss_dssp C
T ss_pred c
Confidence 4
No 21
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2e-28 Score=178.19 Aligned_cols=147 Identities=27% Similarity=0.488 Sum_probs=132.2
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+ .+.+.+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+ ..
T Consensus 41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~ 119 (201)
T 2ew1_A 41 CLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PE 119 (201)
T ss_dssp HHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HH
Confidence 47889999999999999998555 47788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++..++ .++++||++|.|++++|+++++.+.
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999888765 5799999999999976443 778888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 189 ~ 189 (201)
T 2ew1_A 189 S 189 (201)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=4e-28 Score=174.07 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=126.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+.+.||. ..+.+.+.+++..+.++||||+|++++. ++++++++++|||++++.+|+.+ ..|
T Consensus 35 sL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~-~~~ 107 (184)
T 3ihw_A 35 ALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTV-YNY 107 (184)
T ss_dssp HHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHH-HHH
Confidence 4788999999999999994 4566888899999999999999999876 88899999999999999999998 789
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|++|||||+|+.... .+.++.+++.++++.++...++++||++|.||+++|+++++.+.
T Consensus 108 ~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 108 FLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99988765 479999999999995322 23588899999999998449999999999999999999999887
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
+.
T Consensus 180 ~~ 181 (184)
T 3ihw_A 180 AL 181 (184)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.8e-28 Score=171.15 Aligned_cols=150 Identities=29% Similarity=0.490 Sum_probs=132.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||++..+. ..+.+++..+.+.+|||||++.+...+..+++++|++++|||++++.+++.+ ..
T Consensus 24 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 102 (181)
T 3tw8_B 24 SLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KR 102 (181)
T ss_dssp HHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986554 7788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+....++.|+++|+||+|+..... +..+.+..++...++ +++++||++|.|++++|+++.+.+..
T Consensus 103 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 103 WLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999988878899999999999976553 778889999999998 89999999999999999999998875
Q ss_pred Cch
Q 030337 162 PPK 164 (179)
Q Consensus 162 ~~~ 164 (179)
...
T Consensus 172 ~~~ 174 (181)
T 3tw8_B 172 AKK 174 (181)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=8.1e-28 Score=169.27 Aligned_cols=147 Identities=25% Similarity=0.501 Sum_probs=124.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. +.+.+++..+.+.+|||+|++++..++..++++++++++|||++++.+++.+ ..
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 99 (170)
T 1z08_A 21 SLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KN 99 (170)
T ss_dssp HHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999986665 6777888999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..+.. ++.+++..+++..+. .++++||++|.|++++|+++.+.+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHh
Confidence 988887655 5799999999999976543 778889999999997 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 169 ~ 169 (170)
T 1z08_A 169 E 169 (170)
T ss_dssp C
T ss_pred h
Confidence 4
No 25
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=176.32 Aligned_cols=150 Identities=26% Similarity=0.428 Sum_probs=124.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||++..+. ..+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+ ..
T Consensus 28 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~-~~ 106 (223)
T 3cpj_B 28 NLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NH 106 (223)
T ss_dssp HHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHH-HH
Confidence 478899999999999999996665 6788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|++||+||+|+..... ++.+++..+++..++ .++++||++|.||+++|++|++.+.
T Consensus 107 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 107 WLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp HHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998888765 5799999999999976443 777888999999997 8999999999999999999999987
Q ss_pred CCch
Q 030337 161 QPPK 164 (179)
Q Consensus 161 ~~~~ 164 (179)
+...
T Consensus 176 ~~~~ 179 (223)
T 3cpj_B 176 QKVS 179 (223)
T ss_dssp TCC-
T ss_pred HHhh
Confidence 6443
No 26
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-27 Score=173.53 Aligned_cols=161 Identities=45% Similarity=0.797 Sum_probs=130.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+.+++..+.+.||||+|++++..++..++++++++++|||++++.+++.+...|
T Consensus 40 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (207)
T 2fv8_A 40 CLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW 119 (207)
T ss_dssp HHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888777888999999999999999999999999999999999999999999999986689
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+....... ......+.+..+++..+++..+...++++||++|.|++++|++|.+.++
T Consensus 120 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 120 VPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 98888877789999999999997642100 0000112467788889999998878999999999999999999999988
Q ss_pred CCc
Q 030337 161 QPP 163 (179)
Q Consensus 161 ~~~ 163 (179)
++.
T Consensus 200 ~~~ 202 (207)
T 2fv8_A 200 QKR 202 (207)
T ss_dssp SCC
T ss_pred HHh
Confidence 653
No 27
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=6e-28 Score=173.74 Aligned_cols=147 Identities=25% Similarity=0.467 Sum_probs=127.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. +.+.+++..+.++||||+|++++..++..++++++++|+|||++++.+++.+ ..
T Consensus 36 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 114 (191)
T 2a5j_A 36 CLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TS 114 (191)
T ss_dssp HHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986665 7788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++..++ .++++||++|.|++++|++|++.+.
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988888765 5899999999999976443 778889999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 184 ~ 184 (191)
T 2a5j_A 184 R 184 (191)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=6.3e-28 Score=172.12 Aligned_cols=147 Identities=31% Similarity=0.467 Sum_probs=133.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||++..+...+..++..+.+++|||+|++.+..++..+++++|++++|||++++.+|+.+ ..|
T Consensus 33 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 111 (183)
T 3kkq_A 33 ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRF 111 (183)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTH-HHH
T ss_pred HHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC-CCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK-TQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~~i~~~f~~l~~~i 159 (179)
+..+.... .+.|+++|+||+|+.+.. .++.+++..+++.+++ +++++||+ +|.|++++|+++++.+
T Consensus 112 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 112 HQLILRVKDRESFPMILVANKVDLMHLR----------KVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp HHHHHHHHTSSCCCEEEEEECTTCSTTC----------CSCHHHHHHHHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECCCchhcc----------CcCHHHHHHHHHHhCC-eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 88776532 579999999999997654 3888999999999997 89999999 9999999999999987
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
.+
T Consensus 181 ~~ 182 (183)
T 3kkq_A 181 RQ 182 (183)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 29
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=6.4e-28 Score=175.61 Aligned_cols=157 Identities=57% Similarity=0.940 Sum_probs=133.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|...+.||+++.+...+.+++..+.++||||+|++++..++..+++++|++++|||++++.+|+.+...|
T Consensus 45 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 124 (204)
T 4gzl_A 45 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124 (204)
T ss_dssp HHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 47889999999999999999888888888999999999999999999999999999999999999999999999985589
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+....++.|+++|+||+|+....... ......+.++.+++..+++..+..+++++||++|.|++++|+++++.+
T Consensus 125 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 125 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99998887889999999999997543100 000111236778889999999987899999999999999999999865
No 30
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=2.1e-27 Score=172.71 Aligned_cols=147 Identities=29% Similarity=0.522 Sum_probs=132.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||++..+. +.+.+++..+.+.||||+|++++...+..+++++|++|+|||++++.+++.+ ..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~-~~ 101 (206)
T 2bcg_Y 23 CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KM 101 (206)
T ss_dssp HHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999996665 7788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+..... +..+.+..+++..++ +++++||++|.|++++|+++.+.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998888765 5799999999999976443 777888999999998 8999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 171 ~ 171 (206)
T 2bcg_Y 171 E 171 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=5.8e-28 Score=171.58 Aligned_cols=145 Identities=21% Similarity=0.233 Sum_probs=122.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.+ +.||+++.+.+.+.+++..+.+++|||+|+++ ..+++++|++|+|||++++.+|+.+ ..|
T Consensus 22 sli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~-~~~ 94 (178)
T 2iwr_A 22 SLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAV-SRL 94 (178)
T ss_dssp HHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHH-HHH
Confidence 5789999999987 89999988888888999999999999999987 3678999999999999999999998 676
Q ss_pred HHHHhh---cC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 83 IPELRH---YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 83 ~~~i~~---~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+..+.. .. +++|+++||||+|+.... .+.++.+++..+++..+...++++||++|.|++++|+++++.
T Consensus 95 ~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 95 HGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence 554443 32 579999999999995311 134788889999988743389999999999999999999998
Q ss_pred HhCC
Q 030337 159 VLQP 162 (179)
Q Consensus 159 i~~~ 162 (179)
+...
T Consensus 167 ~~~~ 170 (178)
T 2iwr_A 167 VVTL 170 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 32
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.2e-27 Score=167.80 Aligned_cols=147 Identities=26% Similarity=0.462 Sum_probs=130.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+.+.+.+++..+.+++|||+|++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 96 (167)
T 1c1y_A 18 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDL 96 (167)
T ss_dssp HHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTH-HHH
T ss_pred HHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888888899999999999999999999999999999999999999999998 678
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+.++.. ++.+++..+++.++..+++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 87776643 5899999999999976543 77888899999884348999999999999999999998764
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=2e-27 Score=167.05 Aligned_cols=146 Identities=29% Similarity=0.481 Sum_probs=130.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. +.+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.+++.+ ..
T Consensus 21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 99 (170)
T 1r2q_A 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KN 99 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986664 7777888899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+..+.. ++.+++..+++..+. .++++||++|.|++++|++|.+.+.
T Consensus 100 ~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 100 WVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 988887765 6899999999999976443 677888999999998 8999999999999999999998764
No 34
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=5.5e-27 Score=168.34 Aligned_cols=147 Identities=30% Similarity=0.549 Sum_probs=132.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+. +.+..++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+ ..
T Consensus 37 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 115 (189)
T 2gf9_A 37 SFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QD 115 (189)
T ss_dssp HHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986664 6777888899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++.+++ .++++||++|.|++++|+++++.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998888765 5899999999999976543 677889999999998 8999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 185 ~ 185 (189)
T 2gf9_A 185 E 185 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=171.60 Aligned_cols=150 Identities=29% Similarity=0.530 Sum_probs=134.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. ..+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..
T Consensus 31 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 109 (196)
T 3tkl_A 31 CLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQ 109 (196)
T ss_dssp HHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999986554 7788899999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+.+..+++.+++ +++++||++|.|++++|+++++.+.
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998888776 5799999999999976553 788889999999998 8999999999999999999999887
Q ss_pred CCch
Q 030337 161 QPPK 164 (179)
Q Consensus 161 ~~~~ 164 (179)
....
T Consensus 179 ~~~~ 182 (196)
T 3tkl_A 179 KRMG 182 (196)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 5433
No 36
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=1.3e-27 Score=167.55 Aligned_cols=147 Identities=30% Similarity=0.499 Sum_probs=129.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||.+..+...+.+++..+.+.+|||+|++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 19 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 97 (168)
T 1u8z_A 19 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADF 97 (168)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999988888888899999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+.+... +..+++..+++..++ +++++||++|.|++++|+++++.+.
T Consensus 98 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 98 REQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 88887665 3799999999999976543 778889999999998 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 167 ~ 167 (168)
T 1u8z_A 167 A 167 (168)
T ss_dssp T
T ss_pred h
Confidence 4
No 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=5.4e-28 Score=171.50 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=129.5
Q ss_pred eeehhhhhCCCCCcccCceeec-eeeEEEECC-eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDN-FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~-~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|.+.+.||+|.. +.+.+.+++ ..+.+++|||+|++.+..++..+++++|++++|||++++.+++.+ .
T Consensus 21 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 99 (178)
T 2hxs_A 21 SLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-E 99 (178)
T ss_dssp HHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHH-H
Confidence 4788999999999999999844 457777876 689999999999999999999999999999999999999999998 7
Q ss_pred HHHHHHhhcC---CCCc-EEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 81 KWIPELRHYA---PGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 81 ~~~~~i~~~~---~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
.|+..+.... .+.| +++|+||+|+.+... ++.+++..+++..++ +++++||++|.|++++|+++.
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 168 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSHFVSAKTGDSVFLCFQKVA 168 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHH
Confidence 8988887643 2445 899999999976443 777889999999998 899999999999999999999
Q ss_pred HHHhCCc
Q 030337 157 KVVLQPP 163 (179)
Q Consensus 157 ~~i~~~~ 163 (179)
+.+....
T Consensus 169 ~~~~~~~ 175 (178)
T 2hxs_A 169 AEILGIK 175 (178)
T ss_dssp HHHTTCC
T ss_pred HHHHhhh
Confidence 9887643
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=3.7e-27 Score=167.62 Aligned_cols=148 Identities=31% Similarity=0.495 Sum_probs=131.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. ..+.+++..+.+.||||+|++++...+..+++++|++|+|||++++.+++.+ ..
T Consensus 27 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 105 (181)
T 2efe_B 27 SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KK 105 (181)
T ss_dssp HHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986664 7777888899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+.... .+..+++..+++..++ .++++||++|.|++++|++|++.+.
T Consensus 106 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 106 WVQELQAQGNPNMVMALAGNKSDLLDAR----------KVTAEDAQTYAQENGL-FFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTC----------CSCHHHHHHHHHHTTC-EEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccccc----------cCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 988888765 589999999999997544 3778889999999998 8999999999999999999999776
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
..
T Consensus 175 ~~ 176 (181)
T 2efe_B 175 RV 176 (181)
T ss_dssp --
T ss_pred hc
Confidence 43
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=1.8e-27 Score=168.92 Aligned_cols=147 Identities=29% Similarity=0.466 Sum_probs=131.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+++.||++..+.+.+.+++..+.+.+|||+|++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 24 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 102 (181)
T 2fn4_A 24 ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKL 102 (181)
T ss_dssp HHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHH-HHH
Confidence 4788999999999999999988888888999999999999999999999999999999999999999999999998 678
Q ss_pred HHHHhh-cC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.. .. .+.|+++|+||+|+..... ++.+++..++...++ .++++||++|.|++++|++|.+.+.
T Consensus 103 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 103 FTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 777743 33 5799999999999976543 778888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 172 ~ 172 (181)
T 2fn4_A 172 K 172 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=2.6e-27 Score=166.26 Aligned_cols=147 Identities=31% Similarity=0.462 Sum_probs=131.5
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|||++++.+++.+ ..
T Consensus 20 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 98 (168)
T 1z2a_A 20 SMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SS 98 (168)
T ss_dssp HHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999998555 47788889899999999999999999999999999999999999999999998 77
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+....++.|+++|+||+|+..... +..+++..+++..++ +++++||++|.|++++|+++.+.+.+
T Consensus 99 ~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 99 WREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9888876657899999999999976443 677888999999998 99999999999999999999998864
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=1.6e-27 Score=170.28 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=131.7
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+ ...+.+++..+.+.+|||+|++++...+..+++++|++|+|||++++.+++.+ ..
T Consensus 25 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 103 (186)
T 2bme_A 25 CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TN 103 (186)
T ss_dssp HHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999998655 47778899899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... ++.+++..+++..++ .++++||++|.|++++|+++++.+.
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 988887765 5899999999999976443 777888999999998 8999999999999999999999887
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 173 ~ 173 (186)
T 2bme_A 173 N 173 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=5.6e-27 Score=164.82 Aligned_cols=146 Identities=23% Similarity=0.448 Sum_probs=131.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||+|..+. ..+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.+++.+ ..
T Consensus 21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 99 (170)
T 1z0j_A 21 SIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KN 99 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999996664 7778889999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... +..|+++|+||+|+..... +..+++..+++..+. .++++||++|.|++++|+++.+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 998888764 6899999999999976543 777888999999997 8999999999999999999998765
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2.8e-27 Score=167.66 Aligned_cols=147 Identities=27% Similarity=0.489 Sum_probs=131.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. ..+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.+++.+ ..
T Consensus 30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 108 (179)
T 1z0f_A 30 CLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SS 108 (179)
T ss_dssp HHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHH-HH
Confidence 478899999999999999986654 6777889999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++.++++..++ .++++||++|.|++++|+++++.+.
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 988888766 6899999999999976443 778889999999998 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 178 ~ 178 (179)
T 1z0f_A 178 Q 178 (179)
T ss_dssp -
T ss_pred h
Confidence 4
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-27 Score=166.41 Aligned_cols=149 Identities=29% Similarity=0.465 Sum_probs=131.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||+|..+. ..+.+++..+.+.+|||||++.+...+..+++++|++++|||++++.+++.+ ..
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 96 (170)
T 1ek0_A 18 SIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RH 96 (170)
T ss_dssp HHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHH-HH
Confidence 478899999999999999986664 7778899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+.... ..+.+..+.+..+++..++ .++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCCCcEEEEEECCCccccc-------cccCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 988887765 689999999999997642 1234777888999999998 8999999999999999999988664
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.5e-27 Score=165.58 Aligned_cols=148 Identities=31% Similarity=0.546 Sum_probs=122.9
Q ss_pred eeehhhhhCCCC-CcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.|. ..+.||++..+. ..+.+++..+.+++|||+|++.+...+..++++++++++|||++++.+++.+ .
T Consensus 25 sli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~ 103 (180)
T 2g6b_A 25 CLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-Q 103 (180)
T ss_dssp HHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHH-H
Confidence 477889999995 578899986665 5567899999999999999999999999999999999999999999999998 7
Q ss_pred HHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 81 KWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 81 ~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.|+..+.... .+.|+++|+||+|+..... +..+++..+++..++ .++++||++|.|++++|+++.+.+
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8988888766 5899999999999976443 778888999999998 899999999999999999999988
Q ss_pred hCC
Q 030337 160 LQP 162 (179)
Q Consensus 160 ~~~ 162 (179)
.+.
T Consensus 173 ~~~ 175 (180)
T 2g6b_A 173 KRR 175 (180)
T ss_dssp HC-
T ss_pred HHH
Confidence 753
No 46
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=173.32 Aligned_cols=145 Identities=24% Similarity=0.380 Sum_probs=119.8
Q ss_pred eeehhhhh--CCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCcc-ccccCcccccCccEEEEEEeCCChhhHHHH
Q 030337 3 FIYIICNY--SLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENV 78 (179)
Q Consensus 3 ~l~~~~~~--~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 78 (179)
+|+.+|+. ..|.+.+.| +| +.+.+.+.+++..+.+.+|||+|++. +..+...+++.++++|+|||++++.+|+.+
T Consensus 52 SLl~r~~~~~~~~~~~~~~-~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~ 130 (211)
T 2g3y_A 52 TLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA 130 (211)
T ss_dssp HHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcCCc-cceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 46788885 445666555 55 45568888999999999999999986 566777889999999999999999999998
Q ss_pred HHHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 79 AKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 79 ~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
..|...+.... .++|++|||||+|+.... .+..+++..++..+++ .++++||++|.||+++|++++
T Consensus 131 -~~~~~~l~~~~~~~~~piilVgNK~DL~~~r----------~v~~~e~~~~a~~~~~-~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 131 -SELRIQLRRARQTEDIPIILVGNKSDLVRCR----------EVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp -HHHHHHHHTSGGGTTSCEEEEEECTTCGGGC----------CSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCCcEEEEEEChHHhcCc----------eEeHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHH
Confidence 77887776542 479999999999997644 3777888889999998 899999999999999999999
Q ss_pred HHHh
Q 030337 157 KVVL 160 (179)
Q Consensus 157 ~~i~ 160 (179)
+.+.
T Consensus 199 ~~i~ 202 (211)
T 2g3y_A 199 RQVR 202 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=6e-27 Score=169.81 Aligned_cols=147 Identities=27% Similarity=0.546 Sum_probs=132.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+. +.+..++..+.++||||+|++++...+..++++++++|+|||++++.+++.+ ..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 101 (203)
T 1zbd_A 23 SFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAV-QD 101 (203)
T ss_dssp HHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999986654 7777888999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+.... .+..+.+..+++.+++ .++++||++|.|++++|++|++.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 102 WSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHSCSSCEEEEEEECTTCTTSC----------CSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCccc----------ccCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998888766 589999999999997644 3778889999999998 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 171 ~ 171 (203)
T 1zbd_A 171 E 171 (203)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.6e-27 Score=169.85 Aligned_cols=147 Identities=24% Similarity=0.457 Sum_probs=131.2
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+. ..+.+++..+.+.||||+|++++...+..++++++++|+|||++++.+++.+ ..
T Consensus 38 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~-~~ 116 (192)
T 2fg5_A 38 SIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KK 116 (192)
T ss_dssp HHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHH-HH
Confidence 578899999999999999996664 6677788889999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++.++++..++ .++++||++|.|++++|++|.+.+.
T Consensus 117 ~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 117 WVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999888776 5799999999999975443 778889999999997 8999999999999999999999775
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 186 ~ 186 (192)
T 2fg5_A 186 P 186 (192)
T ss_dssp -
T ss_pred h
Confidence 4
No 49
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=4.2e-27 Score=165.46 Aligned_cols=146 Identities=29% Similarity=0.539 Sum_probs=123.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. ..+.+++..+.+.+|||||++++...+..++++++++++|||++++.+++.+ ..
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 96 (170)
T 1g16_A 18 CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQ 96 (170)
T ss_dssp HHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999996664 6777788889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... ++.|+++|+||+|+... .+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTC-----------CSCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECccCCcC-----------ccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 988888766 58999999999999432 2677888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 165 ~ 165 (170)
T 1g16_A 165 E 165 (170)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=172.57 Aligned_cols=147 Identities=30% Similarity=0.475 Sum_probs=120.4
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+ ...+.+++..+.++||||+|++++..++..+++++|++|+|||++++.+++.+ ..
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 118 (200)
T 2o52_A 40 CLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL-AA 118 (200)
T ss_dssp HHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999998655 47777899899999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... ++.+++..+++..++ .++++||++|.|++++|+++++.+.
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988887765 5899999999999976443 777888999999998 8999999999999999999999887
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 188 ~ 188 (200)
T 2o52_A 188 N 188 (200)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=2.1e-27 Score=169.48 Aligned_cols=147 Identities=30% Similarity=0.501 Sum_probs=132.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||.+..+...+.+++..+.+.||||+|++.+..++..++++++++++|||++++.+++.+ ..|
T Consensus 33 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 111 (187)
T 2a9k_A 33 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADF 111 (187)
T ss_dssp HHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHH
Confidence 4788999999999999999988888888899999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+.+... +..+++..+++.+++ +++++||++|.|++++|++|++.+.
T Consensus 112 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 112 REQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 88887665 3799999999999976543 778889999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 181 ~ 181 (187)
T 2a9k_A 181 A 181 (187)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=3.8e-27 Score=164.98 Aligned_cols=146 Identities=27% Similarity=0.486 Sum_probs=130.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+.+.+.+++..+.+++|||||++.+..++..++++++++++|||++++.+++.+ ..|
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 96 (167)
T 1kao_A 18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPM 96 (167)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHH
Confidence 4778999999999999999988888888999999999999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
...+.... .+.|+++|+||+|+..... +..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 77776654 4799999999999976443 777888999999998 8999999999999999999998764
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-26 Score=166.28 Aligned_cols=149 Identities=27% Similarity=0.534 Sum_probs=132.7
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||++..+. +.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+ ..
T Consensus 30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 108 (195)
T 1x3s_A 30 SLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DN 108 (195)
T ss_dssp HHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999986654 7778899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.... .+.|+++|+||+|+... .+..+++..+++..++ .++++||++|.|++++|++|.+.+
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKENR-----------EVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSSC-----------CSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCccc-----------ccCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHH
Confidence 998888765 47999999999999542 2677888999999998 899999999999999999999998
Q ss_pred hCCch
Q 030337 160 LQPPK 164 (179)
Q Consensus 160 ~~~~~ 164 (179)
.+...
T Consensus 177 ~~~~~ 181 (195)
T 1x3s_A 177 IQTPG 181 (195)
T ss_dssp HTSGG
T ss_pred Hhhhh
Confidence 86543
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=168.48 Aligned_cols=147 Identities=27% Similarity=0.448 Sum_probs=131.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.||+|..+. ..+.+++..+.+.||||+|++++..++..++++++++|+|||++++.+++.+ ..
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~-~~ 118 (193)
T 2oil_A 40 NLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ER 118 (193)
T ss_dssp HHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986664 6777888999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++..++ .++++||++|.|++++|++|++.+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988887765 5899999999999976443 677888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 188 ~ 188 (193)
T 2oil_A 188 A 188 (193)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=8.5e-27 Score=163.57 Aligned_cols=146 Identities=23% Similarity=0.364 Sum_probs=105.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++....+ ....|+.|..+.+.+.+++..+.+.+|||+|++.+..++..++++++++++|||++++.+|+.+ ..|
T Consensus 17 sli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 94 (166)
T 3q72_A 17 ALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SEL 94 (166)
T ss_dssp HHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHcCccc-cCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHH-HHH
Confidence 35667765554 3556788877778888999999999999999999999999999999999999999999999998 778
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... ++.|+++|+||+|+.+... ++.+++..++...++ +++++||++|.|++++|+++++.+.
T Consensus 95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 95 RVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHHHHHHH
Confidence 88777653 5899999999999976553 888899999999998 9999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 164 ~ 164 (166)
T 3q72_A 164 L 164 (166)
T ss_dssp H
T ss_pred h
Confidence 3
No 56
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.9e-28 Score=174.71 Aligned_cols=147 Identities=28% Similarity=0.530 Sum_probs=133.0
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||+|..+. ..+..++..+.++||||+|++.+..++..++++++++|+|||++++.+|+.+ ..
T Consensus 38 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 116 (191)
T 3dz8_A 38 SFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QD 116 (191)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHH-HH
Confidence 478899999999999999986654 7777888889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..+.. +..+++..+++..++ .++++||++|.|++++|+++++.+.
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999998866 6899999999999976543 788889999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 186 ~ 186 (191)
T 3dz8_A 186 D 186 (191)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.3e-27 Score=169.42 Aligned_cols=146 Identities=28% Similarity=0.425 Sum_probs=131.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+.+.+.+++..+.+++|||+|++. ...+..++++++++++|||++++.+++.+ ..|
T Consensus 43 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~ 120 (196)
T 2atv_A 43 ALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEV-LPL 120 (196)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHH
T ss_pred HHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHH-HHH
Confidence 5788999999999999999988888888899999999999999998 77788899999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC-cHHHHHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ-NVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~l~~~i 159 (179)
+..+.... .+.|+++|+||+|+..... ++.+++..+++.+++ .++++||++|. |++++|+++++.+
T Consensus 121 ~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 121 KNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEECCCcCCcCHHHHHHHHHHHH
Confidence 88877643 5899999999999976543 778889999999998 89999999999 9999999999988
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
.+
T Consensus 190 ~~ 191 (196)
T 2atv_A 190 RR 191 (196)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 58
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=170.00 Aligned_cols=148 Identities=24% Similarity=0.376 Sum_probs=124.5
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccc-cCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+|....+...+.|+++ +.+.+.+.+++..+.+.+|||+|++.+.. ++..++++++++|+|||++++.+|+.+ .
T Consensus 38 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~ 116 (195)
T 3cbq_A 38 TLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-P 116 (195)
T ss_dssp HHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHH-H
Confidence 46777765555444556665 44557788899999999999999998765 777889999999999999999999998 7
Q ss_pred HHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 81 KWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 81 ~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.|+..+.... .++|+++||||+|+.... .++.+++..+++.+++ .++++||++|.|++++|+++++.
T Consensus 117 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 117 ETLLRLRAGRPHHDLPVILVGNKSDLARSR----------EVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp HHHHHHHHHSTTSCCCEEEEEECTTCTTTC----------CSCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeechhccccC----------CcCHHHHHHHHHHhCC-EEEEEcCCCCCCHHHHHHHHHHH
Confidence 8988887655 479999999999997644 3788889999999997 89999999999999999999998
Q ss_pred HhCC
Q 030337 159 VLQP 162 (179)
Q Consensus 159 i~~~ 162 (179)
+...
T Consensus 186 i~~~ 189 (195)
T 3cbq_A 186 IRLR 189 (195)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8653
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=170.58 Aligned_cols=153 Identities=27% Similarity=0.439 Sum_probs=122.4
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+. +.+.+++..+.++||||+|++++...+..+++++|++|+|||++++.+++.+ ..
T Consensus 43 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~~ 121 (199)
T 2p5s_A 43 SFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-RE 121 (199)
T ss_dssp HHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHH-HH
Confidence 478899999999999999996554 7788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|++||+||+|+..... ....+.+..+.+..+++..++ .++++||++|.|++++|++|++.+.
T Consensus 122 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 122 WVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 998888765 5799999999999963210 011234778888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 197 ~ 197 (199)
T 2p5s_A 197 K 197 (199)
T ss_dssp C
T ss_pred h
Confidence 4
No 60
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=1.9e-26 Score=163.38 Aligned_cols=148 Identities=30% Similarity=0.533 Sum_probs=125.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+ ...+.+++..+.+.+|||+|++++...+..++++++++++|||++++.+++.+ ..
T Consensus 22 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 100 (177)
T 1wms_A 22 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SN 100 (177)
T ss_dssp HHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999998665 47788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 82 WIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 82 ~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
|+..+.... .+.|+++|+||+|+.. . .+..+++..+++.....+++++||++|.|++++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDISE-R----------QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-C----------SSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHccccccCCCcEEEEEECCcccc-c----------ccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 888876543 4789999999999973 2 26778888888844434899999999999999999999
Q ss_pred HHHhCC
Q 030337 157 KVVLQP 162 (179)
Q Consensus 157 ~~i~~~ 162 (179)
+.+.+.
T Consensus 170 ~~~~~~ 175 (177)
T 1wms_A 170 RRVLAT 175 (177)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 988753
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=2.6e-27 Score=171.87 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=103.1
Q ss_pred eeehhhhhC--CCCCcccCcee-eceeeEEEECCe--EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHH
Q 030337 3 FIYIICNYS--LGKQDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 77 (179)
Q Consensus 3 ~l~~~~~~~--~f~~~~~pt~~-~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 77 (179)
+|+.++..+ .|.+.+.||+| +.+.+.+.+++. .+.++||||+|++.+...+..+++++|++|+|||++++.+|+.
T Consensus 35 sli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 114 (208)
T 2yc2_C 35 ALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES 114 (208)
T ss_dssp --------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHH
T ss_pred HHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHH
Confidence 578889999 89999999998 455577888887 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC----CCcEEEEEeCCCccc-ccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC-CCcHHHH
Q 030337 78 VAKKWIPELRHYAP----GVPIILVGTKLDLRD-DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT-QQNVKAV 151 (179)
Q Consensus 78 ~~~~~~~~i~~~~~----~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~~i~~~ 151 (179)
+ ..|+..+....+ +.|+++|+||+|+.. .. .++.+++..+++.+++ .++++||++ |.|++++
T Consensus 115 ~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 115 C-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRH----------QVRLDMAQDWATTNTL-DFFDVSANPPGKDADAP 182 (208)
T ss_dssp H-HHHHHHHHHHCSCTTSCCEEEEEEECC-----------------CCCHHHHHHHHHHTTC-EEEECCC-------CHH
T ss_pred H-HHHHHHHHHhhcccccCCcEEEEEECcccchhhc----------cCCHHHHHHHHHHcCC-EEEEeccCCCCcCHHHH
Confidence 9 789998887653 799999999999976 44 3778899999999997 999999999 9999999
Q ss_pred HHHHHHHHhCCc
Q 030337 152 FDAAIKVVLQPP 163 (179)
Q Consensus 152 f~~l~~~i~~~~ 163 (179)
|+++++.+.+..
T Consensus 183 ~~~i~~~~~~~~ 194 (208)
T 2yc2_C 183 FLSIATTFYRNY 194 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=170.89 Aligned_cols=148 Identities=30% Similarity=0.503 Sum_probs=122.5
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.||+|..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+ ..
T Consensus 41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~-~~ 119 (192)
T 2il1_A 41 SLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PK 119 (192)
T ss_dssp HHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HH
Confidence 47889999999999999998555 47788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++..+...++++||++|.|++++|++|++.+.
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988888766 4799999999999976543 77788889988853348999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 190 ~ 190 (192)
T 2il1_A 190 K 190 (192)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=9.2e-27 Score=169.12 Aligned_cols=147 Identities=27% Similarity=0.461 Sum_probs=126.7
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||+|..+ ...+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 101 (207)
T 1vg8_A 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DS 101 (207)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHH-HH
Confidence 47889999999999999998554 46777788889999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 82 WIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 82 ~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
|+..+.... .+.|+++|+||+|+... .+..+.+..+++ ..+. .++++||++|.|++++|++|
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 102 WRDEFLIQASPRDPENFPFVVLGNKIDLENR-----------QVATKRAQAWCYSKNNI-PYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp HHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----------CSCHHHHHHHHHHTTSC-CEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEEECCCCccc-----------ccCHHHHHHHHHhcCCc-eEEEEeCCCCCCHHHHHHHH
Confidence 888776543 37899999999999732 266778888888 4555 89999999999999999999
Q ss_pred HHHHhCC
Q 030337 156 IKVVLQP 162 (179)
Q Consensus 156 ~~~i~~~ 162 (179)
++.+...
T Consensus 170 ~~~~~~~ 176 (207)
T 1vg8_A 170 ARNALKQ 176 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988653
No 64
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=9.7e-27 Score=163.71 Aligned_cols=147 Identities=24% Similarity=0.378 Sum_probs=114.0
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccc-cCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.++..+.+...+.++.+ +.+.+.+.+++..+.+.+|||+|++.+.. ++..+++++|++++|||++++.+|+.+ .
T Consensus 17 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 95 (169)
T 3q85_A 17 TLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-P 95 (169)
T ss_dssp HHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHH-H
Confidence 46788888888766666665 44557788899999999999999999876 777789999999999999999999999 7
Q ss_pred HHHHHHhhcCC--CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 81 KWIPELRHYAP--GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 81 ~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
.|+..+....+ +.|+++|+||+|+.+... ++.+++..+++..++ +++++||++|.|++++|+++++.
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 96 ETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp HHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCccCCCHHHHHHHHHHH
Confidence 88888877653 899999999999976543 888999999999998 99999999999999999999998
Q ss_pred HhC
Q 030337 159 VLQ 161 (179)
Q Consensus 159 i~~ 161 (179)
+..
T Consensus 165 i~~ 167 (169)
T 3q85_A 165 IRL 167 (169)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=8.1e-27 Score=167.30 Aligned_cols=147 Identities=27% Similarity=0.469 Sum_probs=129.9
Q ss_pred eeehhhhhCCCCCcccCceeecee--eEEEECCe---------EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~--~~~~~~~~---------~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.++..+.|.+.+.||++..+. +.+..++. .+.+.+|||+|++.+...+..+++++|++|+|||+++
T Consensus 26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 105 (195)
T 3bc1_A 26 SVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN 105 (195)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC
T ss_pred HHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC
Confidence 478899999999999999986664 45556665 7899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 72 KASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
+.+++.+ ..|+..+.... .+.|+++|+||+|+..... +..+++.++++..++ +++++||++|.|++
T Consensus 106 ~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 173 (195)
T 3bc1_A 106 EQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKYGI-PYFETSAANGTNIS 173 (195)
T ss_dssp HHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECCTTTCTTHH
T ss_pred HHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-CEEEEECCCCCCHH
Confidence 9999998 78988887765 5899999999999976443 777889999999998 89999999999999
Q ss_pred HHHHHHHHHHhC
Q 030337 150 AVFDAAIKVVLQ 161 (179)
Q Consensus 150 ~~f~~l~~~i~~ 161 (179)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (195)
T 3bc1_A 174 HAIEMLLDLIMK 185 (195)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=1.3e-26 Score=164.21 Aligned_cols=146 Identities=32% Similarity=0.514 Sum_probs=129.8
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+ ...+.+++..+.+.+|||+|++++...+..++++++++++|||++++.+++.+ ..
T Consensus 29 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 107 (179)
T 2y8e_A 29 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SK 107 (179)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HH
Confidence 47889999999999999998544 57788899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+..... +..+++..+++..+. .++++||++|.|++++|+++.+.+.
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 888877654 5799999999999976543 777888999999998 8999999999999999999998664
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=1.1e-26 Score=166.87 Aligned_cols=146 Identities=25% Similarity=0.411 Sum_probs=127.3
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCcccc-ccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+++.+.|.+.+.||++..+. ..+.+++..+.+.||||+|++++. .++..++++++++|+|||++++.+++.+ .
T Consensus 35 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~ 113 (189)
T 1z06_A 35 CLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-P 113 (189)
T ss_dssp HHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHH-H
Confidence 578899999999999999986654 778889989999999999999998 7888999999999999999999999998 7
Q ss_pred HHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC---CcHHHHHHHH
Q 030337 81 KWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ---QNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~---~~i~~~f~~l 155 (179)
.|+..+.... .+.|+++|+||+|+..... ++.+++..+++..++ .++++||++| .|++++|++|
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEeCCcCCcccCHHHHHHHH
Confidence 8988887764 5799999999999976543 778889999999998 8999999999 9999999999
Q ss_pred HHHHh
Q 030337 156 IKVVL 160 (179)
Q Consensus 156 ~~~i~ 160 (179)
++.+.
T Consensus 183 ~~~i~ 187 (189)
T 1z06_A 183 AHKLK 187 (189)
T ss_dssp C----
T ss_pred HHHHh
Confidence 88764
No 68
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=163.67 Aligned_cols=145 Identities=22% Similarity=0.355 Sum_probs=114.4
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCcc--ccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|+.++..+.|.+.+. +.| +.+.+.+.+++..+.+.+|||+|++. +..+...++++++++++|||++++.+|+.+
T Consensus 19 sl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~- 96 (175)
T 2nzj_A 19 SLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA- 96 (175)
T ss_dssp HHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHH-
T ss_pred HHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHH-
Confidence 4778899888876544 456 44457788899999999999999988 566777889999999999999999999998
Q ss_pred HHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 80 KKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 80 ~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
..|+..+.... .+.|+++|+||+|+.+... ++.+++..++..+++ +++++||++|.|++++|++|++
T Consensus 97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 97 SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHH
Confidence 78888887653 4799999999999976443 777888899999997 8999999999999999999999
Q ss_pred HHh
Q 030337 158 VVL 160 (179)
Q Consensus 158 ~i~ 160 (179)
.+.
T Consensus 166 ~~~ 168 (175)
T 2nzj_A 166 QLR 168 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 69
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=2.7e-26 Score=177.83 Aligned_cols=160 Identities=56% Similarity=0.930 Sum_probs=137.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|...+.||+++.+...+.+++..+.+++|||+|++.+...+..+++++|++++|||++++.+|+.+...|
T Consensus 170 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 249 (332)
T 2wkq_A 170 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW 249 (332)
T ss_dssp HHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred HHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 47889999999999999999988888889999999999999999999999999999999999999999999999985589
Q ss_pred HHHHhhcCCCCcEEEEEeCCCcccccccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+.+..... ......+.++.+++..+++..+...++++||++|.|++++|+++++.++
T Consensus 250 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 250 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 99888877789999999999996531100 0001113477888999999999778999999999999999999999887
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
.+
T Consensus 330 ~~ 331 (332)
T 2wkq_A 330 CP 331 (332)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 70
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=2.7e-27 Score=173.42 Aligned_cols=148 Identities=32% Similarity=0.524 Sum_probs=130.6
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCe----------EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGS----------TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.|.+.+.||++..+. +.+.+++. .+.++||||+|++++...+..+++++|++|+|||+++
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~ 119 (217)
T 2f7s_A 40 TFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS 119 (217)
T ss_dssp HHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC
T ss_pred HHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC
Confidence 478899999999999999986664 67777766 7899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 72 KASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
+.+++.+ ..|+..+.... .+.|++||+||+|+..... +..+++..+++.+++ .++++||++|.|++
T Consensus 120 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 120 QQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYGI-PYFETSAATGQNVE 187 (217)
T ss_dssp HHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEEBTTTTBTHH
T ss_pred HHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHHCCC-cEEEEECCCCCCHH
Confidence 9999998 78988887655 5799999999999976543 778889999999998 89999999999999
Q ss_pred HHHHHHHHHHhCC
Q 030337 150 AVFDAAIKVVLQP 162 (179)
Q Consensus 150 ~~f~~l~~~i~~~ 162 (179)
++|++|++.+.+.
T Consensus 188 ~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 188 KAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=4.2e-26 Score=163.64 Aligned_cols=146 Identities=32% Similarity=0.505 Sum_probs=121.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||.++.+...+.+++..+.+.||||+|++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 36 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 114 (190)
T 3con_A 36 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLY 114 (190)
T ss_dssp HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHH-HHH
Confidence 4778899999999999999988888888999999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+... .+..+++.++++.+++ +++++||++|.|++++|++|++.+.
T Consensus 115 ~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 115 REQIKRVKDSDDVPMVLVGNKCDLPTR-----------TVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEEEECCcCCcc-----------cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88887654 37999999999999652 2677888999999998 8999999999999999999999886
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 183 ~ 183 (190)
T 3con_A 183 Q 183 (190)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.7e-27 Score=164.00 Aligned_cols=147 Identities=26% Similarity=0.439 Sum_probs=129.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+...+..++..+.+.+|||||++++..++..++++++++++|||++++.+++.+ ..|
T Consensus 18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 96 (172)
T 2erx_A 18 SLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPI 96 (172)
T ss_dssp HHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHH
T ss_pred HHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHH-HHH
Confidence 4788999999999999999988887788889899999999999999999999999999999999999999999988 677
Q ss_pred HHHHhhcC---CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 83 IPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 83 ~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+..+.+.. ++.|+++|+||+|+..... +...++..+++..++ +++++||++|.|++++|+++.+.+
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCCCCcCHHHHHHHHHHHH
Confidence 77766543 4799999999999976543 677788889999998 899999999999999999999866
Q ss_pred hC
Q 030337 160 LQ 161 (179)
Q Consensus 160 ~~ 161 (179)
..
T Consensus 166 ~~ 167 (172)
T 2erx_A 166 KR 167 (172)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=1.3e-26 Score=164.62 Aligned_cols=149 Identities=30% Similarity=0.501 Sum_probs=113.9
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEEC-CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+++.+.|.+.+.||+|..+ ...+.++ +..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+ .
T Consensus 23 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 101 (182)
T 1ky3_A 23 SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-K 101 (182)
T ss_dssp HHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHH-H
Confidence 47889999999999999998554 4666666 5678999999999999999999999999999999999999999998 7
Q ss_pred HHHHHHhhcC-----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 81 KWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 81 ~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.|+..+.... .+.|+++|+||+|+..... .+..+++..+++..+...++++||++|.|++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHH
Confidence 8888776543 4789999999999964331 3677888888885444489999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
.+.+.+
T Consensus 173 ~~~~~~ 178 (182)
T 1ky3_A 173 ARSALQ 178 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=2.2e-27 Score=170.81 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=122.7
Q ss_pred eehhhhhCCCCCcc-----------cCceeecee-eEE-EECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCC
Q 030337 4 IYIICNYSLGKQDY-----------VPTVFDNFS-ANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 70 (179)
Q Consensus 4 l~~~~~~~~f~~~~-----------~pt~~~~~~-~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 70 (179)
|+ +++.+.|.+.+ .||+|..+. +.+ .+++..+.++||||+|++++..++..+++++|++|+|||++
T Consensus 30 L~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 30 NL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp HH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECC
T ss_pred HH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECC
Confidence 45 78888888775 457775554 444 56788999999999999999999999999999999999999
Q ss_pred ------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 030337 71 ------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 144 (179)
Q Consensus 71 ------~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 144 (179)
+..+|+.+ ..|+..++....+.|++||+||+|+... ++.+++.++++..++..++++||++
T Consensus 109 ~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (198)
T 3t1o_A 109 PNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMVRAVVDPEGKFPVLEAVATE 175 (198)
T ss_dssp GGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHHHHHHCTTCCSCEEECBGGG
T ss_pred cchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHHHHHHHhcCCceEEEEecCC
Confidence 56778887 6888888655578999999999999652 6778889999998876899999999
Q ss_pred CCcHHHHHHHHHHHHhCC
Q 030337 145 QQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 145 ~~~i~~~f~~l~~~i~~~ 162 (179)
|.|++++|++|++.+.+.
T Consensus 176 ~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 176 GKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988753
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=6.4e-26 Score=158.41 Aligned_cols=146 Identities=30% Similarity=0.503 Sum_probs=130.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+...+..++..+.+.+|||+|++++...+..++++++++++|||++++.+++.+ ..|
T Consensus 18 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 96 (166)
T 2ce2_X 18 ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQY 96 (166)
T ss_dssp HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHH
T ss_pred HHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 4678899999999999999988888888899999999999999999999999999999999999999999999998 788
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+... .+..+.+.++++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAAR-----------TVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhc-----------ccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 88887664 37999999999999752 2667888999999998 8999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 165 ~ 165 (166)
T 2ce2_X 165 Q 165 (166)
T ss_dssp T
T ss_pred h
Confidence 4
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=4.6e-26 Score=166.08 Aligned_cols=146 Identities=30% Similarity=0.546 Sum_probs=129.7
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.+.+.||++..+. ..+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+ ..
T Consensus 35 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 113 (213)
T 3cph_A 35 CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQ 113 (213)
T ss_dssp HHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HH
Confidence 478899999999999999986664 7778899999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+.. . .+..+++..+++.+++ +++++||++|.|++++|++|.+.+.
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl~~-~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDMET-R----------VVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCSS-C----------CSCHHHHHHHHHHHTC-CEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcc-c----------ccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 988888766 4799999999999943 2 2677888899999998 8999999999999999999999875
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 182 ~ 182 (213)
T 3cph_A 182 E 182 (213)
T ss_dssp H
T ss_pred H
Confidence 4
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=2.8e-26 Score=165.52 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=116.9
Q ss_pred eeehhhhh--CCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCcc-ccccCcccccCccEEEEEEeCCChhhHHHHH
Q 030337 3 FIYIICNY--SLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVA 79 (179)
Q Consensus 3 ~l~~~~~~--~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 79 (179)
+|+.+|+. ..|.+.+.++..+.+.+.+.+++..+.+.+|||+|++. +..++..+++.++++++|||++++.||+.+
T Consensus 21 sL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~- 99 (192)
T 2cjw_A 21 TLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA- 99 (192)
T ss_dssp HHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHH-
T ss_pred HHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHH-
Confidence 46788885 45666665543355568888999999999999999876 566778889999999999999999999998
Q ss_pred HHHHHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 80 KKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 80 ~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
..|...+.... .+.|+++||||+|+..+. .+..+++..++...++ .++++||++|.||+++|+++++
T Consensus 100 ~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r----------~v~~~~~~~~a~~~~~-~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 100 SELRIQLRRARQTEDIPIILVGNKSDLVRXR----------EVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEECTTCGGGC----------CSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEEEechhhhccc----------cccHHHHHHHHHHhCC-ceEEeccccCCCHHHHHHHHHH
Confidence 78887776543 479999999999997544 3777788888888887 8999999999999999999999
Q ss_pred HHhC
Q 030337 158 VVLQ 161 (179)
Q Consensus 158 ~i~~ 161 (179)
.+..
T Consensus 169 ~~~~ 172 (192)
T 2cjw_A 169 QVRL 172 (192)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=172.06 Aligned_cols=147 Identities=29% Similarity=0.550 Sum_probs=121.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|...+.||++..+. ..+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+ ..
T Consensus 48 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~ 126 (199)
T 3l0i_B 48 CLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQ 126 (199)
T ss_dssp TTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HH
Confidence 478889999999999999986654 7788899999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|++||+||+|+..... +..+++..+++.+++ +++++||++|.|++++|++|++.+.
T Consensus 127 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 127 WLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999988776 4799999999999976443 555667888999998 8999999999999999999988775
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
+
T Consensus 196 ~ 196 (199)
T 3l0i_B 196 K 196 (199)
T ss_dssp T
T ss_pred H
Confidence 4
No 79
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=1.7e-25 Score=161.49 Aligned_cols=145 Identities=25% Similarity=0.418 Sum_probs=125.1
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeE-------------------------------------EEEEEEeCC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGST-------------------------------------VNLGLWDTA 44 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~-------------------------------------~~~~i~D~~ 44 (179)
+|+.+++.+.|.+.+.||+|..+. ..+.+++.. +.+.|||||
T Consensus 22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 101 (208)
T 3clv_A 22 SIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTA 101 (208)
T ss_dssp HHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECT
T ss_pred HHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECC
Confidence 478899999999999999986554 556666655 899999999
Q ss_pred CCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHH
Q 030337 45 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 124 (179)
Q Consensus 45 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 124 (179)
|++.+...+..+++++|++++|||++++.+++.+ ..|+..+....+ .|+++|+||+| .... .+..++
T Consensus 102 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-~~~~----------~~~~~~ 168 (208)
T 3clv_A 102 GQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-KNKF----------QVDILE 168 (208)
T ss_dssp TGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-CC-C----------CSCHHH
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-cccc----------cCCHHH
Confidence 9999999999999999999999999999999998 789888877654 99999999999 3322 377888
Q ss_pred HHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 125 GEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 125 ~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+..+++..++ .++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 169 VQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999998 99999999999999999999988763
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=1.5e-26 Score=170.06 Aligned_cols=147 Identities=25% Similarity=0.409 Sum_probs=128.9
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+|+.+.|...+.||+|..+ .....+++..+.++||||+|++.+..++..++++++++++|||++++.+|+.+ ..
T Consensus 30 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 108 (221)
T 3gj0_A 30 TFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PN 108 (221)
T ss_dssp HHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HH
Confidence 47788899999999999998554 46777889999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
|+..+....++.|+++|+||+|+.+.. +. .++..+++..++ .++++||++|.|++++|+++.+.+..
T Consensus 109 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 109 WHRDLVRVCENIPIVLCGNKVDIKDRK-----------VK-AKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTSSSCS-----------SC-GGGCCHHHHHTC-EEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCEEEEEECCcccccc-----------cc-HHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999998887789999999999997533 22 245667788887 89999999999999999999999876
Q ss_pred Cc
Q 030337 162 PP 163 (179)
Q Consensus 162 ~~ 163 (179)
..
T Consensus 176 ~~ 177 (221)
T 3gj0_A 176 DP 177 (221)
T ss_dssp CT
T ss_pred Cc
Confidence 54
No 81
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.8e-28 Score=175.94 Aligned_cols=158 Identities=58% Similarity=0.940 Sum_probs=132.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||+++.+...+.+++..+.+++|||+|++++...+..+++++|++++|||++++.+++.+...|
T Consensus 45 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~ 124 (204)
T 3th5_A 45 CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124 (204)
Confidence 57889999999999999999888888888888899999999999999999999999999999999999999999984488
Q ss_pred HHHHhhcCCCCcEEEEEeCCCccccccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+....++.|+++|+||+|+........ .....+.+..+++..+++..+..+++++||++|.|++++|+++++.++
T Consensus 125 ~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 125 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 888887666899999999999975431000 000112356677888888888767999999999999999999988653
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=1e-25 Score=162.48 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=111.9
Q ss_pred eeehhhhhCCCCC-cccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQ-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.+++.+.|.. ++.||+|..+ ..+ ++..+.++||||+|++++..++..+++++|++|+|||++++.+|+.+ ..
T Consensus 32 sl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~ 107 (199)
T 4bas_A 32 TIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV-KS 107 (199)
T ss_dssp HHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH-HH
T ss_pred HHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHH-HH
Confidence 5788999999998 8999998333 333 34448999999999999999999999999999999999999999998 66
Q ss_pred HHHHHhhcC---------CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHH-HHHHhCCCeEEEeccCCCCcHHHH
Q 030337 82 WIPELRHYA---------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-LRKLIGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 82 ~~~~i~~~~---------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~Sa~~~~~i~~~ 151 (179)
|+..+.... .+.|++||+||+|+..... ...+....... +++..++ .++++||++|.||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 108 EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHPF-VIFASNGLKGTGVHEG 179 (199)
T ss_dssp HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSCE-EEEECBTTTTBTHHHH
T ss_pred HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCee-EEEEeeCCCccCHHHH
Confidence 766664431 2799999999999976421 00011111111 1234565 8999999999999999
Q ss_pred HHHHHHHHhCCc
Q 030337 152 FDAAIKVVLQPP 163 (179)
Q Consensus 152 f~~l~~~i~~~~ 163 (179)
|++|++.+.+..
T Consensus 180 ~~~l~~~~~~~~ 191 (199)
T 4bas_A 180 FSWLQETASRQS 191 (199)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999887543
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=2.5e-25 Score=163.05 Aligned_cols=150 Identities=25% Similarity=0.363 Sum_probs=126.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeE-EEE-CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSAN-VVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~-~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 80 (179)
+|+.+++.+.|...+.||++..+... ... ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+ .
T Consensus 26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~ 104 (218)
T 4djt_A 26 TYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-A 104 (218)
T ss_dssp HHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-H
T ss_pred HHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHH-H
Confidence 47788899999999999998655533 333 34558999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 81 KWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 81 ~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.|+..+.... .+.|+++|+||+|+..... +..+.+..+++..++ .++++||++|.|++++|+++.+.+
T Consensus 105 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 105 RWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHH
Confidence 8988888766 4699999999999976543 777888888888888 899999999999999999999998
Q ss_pred hCCch
Q 030337 160 LQPPK 164 (179)
Q Consensus 160 ~~~~~ 164 (179)
.+...
T Consensus 174 ~~~~~ 178 (218)
T 4djt_A 174 TGRPD 178 (218)
T ss_dssp HCCTT
T ss_pred hcccc
Confidence 76543
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.92 E-value=6.3e-25 Score=159.07 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=106.5
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||++.. ...+.+++ +.+++|||||+++++.++..++++++++++|||++++.+|+.+ ..|
T Consensus 40 sLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~ 114 (198)
T 1f6b_A 40 TLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES-KEE 114 (198)
T ss_dssp HHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHH
Confidence 467888888884 578998864 45677777 8899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh----------------CCCeEEEeccCC
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI----------------GSPAYIECSSKT 144 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~ 144 (179)
+..+.+.. .+.|+++|+||+|+.. .++.+++.+++... ....+++|||++
T Consensus 115 ~~~~~~~~~~~~~piilv~NK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 182 (198)
T 1f6b_A 115 LDSLMTDETIANVPILILGNKIDRPE------------AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182 (198)
T ss_dssp HHHHHTCGGGTTSCEEEEEECTTSTT------------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred HHHHHhCcccCCCcEEEEEECCCccc------------cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCC
Confidence 77765542 5799999999999965 15666666665532 123799999999
Q ss_pred CCcHHHHHHHHHHHH
Q 030337 145 QQNVKAVFDAAIKVV 159 (179)
Q Consensus 145 ~~~i~~~f~~l~~~i 159 (179)
|.|++++|+++.+.+
T Consensus 183 g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 183 RQGYGEGFRWMAQYI 197 (198)
T ss_dssp TBSHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998643
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=2.9e-24 Score=154.55 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=113.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||++.. ...+.+++ +.+++|||+|+++++.++..++++++++++|||++++.+|+.+ ..|
T Consensus 38 sli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 112 (190)
T 1m2o_B 38 TLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA-RVE 112 (190)
T ss_dssp HHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHH-HHH
Confidence 477889999885 578998863 46677777 8899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH------------hCCCeEEEeccCCCCcH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL------------IGSPAYIECSSKTQQNV 148 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~i 148 (179)
+..+.... .+.|+++|+||+|+... ++.+++.+.+.. .++ .++++||++|.|+
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 113 LDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQRPV-EVFMCSVVMRNGY 179 (190)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSSCCE-EEEECBTTTTBSH
T ss_pred HHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCccccccccccccceE-EEEEeECCcCCCH
Confidence 77665432 57999999999999651 455555555432 233 7999999999999
Q ss_pred HHHHHHHHHH
Q 030337 149 KAVFDAAIKV 158 (179)
Q Consensus 149 ~~~f~~l~~~ 158 (179)
+++|+++.+.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=2.9e-25 Score=155.37 Aligned_cols=141 Identities=12% Similarity=0.131 Sum_probs=107.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+ +.||++.. ...+..+ .+.+++|||+|++++..++..+++++|++++|||++++.+|+.+ ..|
T Consensus 15 sl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~ 89 (164)
T 1r8s_A 15 TILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REE 89 (164)
T ss_dssp HHHHHHHHHCSSC-CCCCSSCC-EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHHcCCcCc-ccCcCcee-EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 4778899999874 68998832 3334333 48899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHH-H----HHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L----RKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... ++.|+++|+||+|+.+.. ..++... + ++..++ +++++||++|.|++++|+++
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 90 LMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcccCCCcCHHHHHHHH
Confidence 77665432 579999999999996532 1111111 1 112233 68999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
.+.+.+
T Consensus 157 ~~~i~~ 162 (164)
T 1r8s_A 157 SNQLRN 162 (164)
T ss_dssp HHHC--
T ss_pred HHHHhh
Confidence 987753
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.3e-24 Score=153.54 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=111.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||+|. ....+.+++ +.+++|||+|++++...+..+++++|++++|||++++.+|+.+ ..|
T Consensus 31 sl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~ 105 (187)
T 1zj6_A 31 TILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REE 105 (187)
T ss_dssp HHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHH-HHH
T ss_pred HHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHH
Confidence 478899999998 78999883 335566666 8899999999999999999999999999999999999999998 678
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|+++|+||+|+... ...++..+... ..++ .++++||++|.|++++|+++
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 106 LYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp HHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEEEccCCCCcCHHHHHHHH
Confidence 77776542 57999999999999652 23333333332 2344 79999999999999999999
Q ss_pred HHHHhCCch
Q 030337 156 IKVVLQPPK 164 (179)
Q Consensus 156 ~~~i~~~~~ 164 (179)
++.+.....
T Consensus 173 ~~~~~~~~~ 181 (187)
T 1zj6_A 173 MSRLKIRLE 181 (187)
T ss_dssp HHHHCC---
T ss_pred HHHHHHHhh
Confidence 998865543
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=5.4e-24 Score=149.76 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=111.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|. .+.||+|.. ...+.+++ +.+++|||||++.+...+..+++++|++++|||++++.+|+.+ ..|
T Consensus 22 sl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~ 96 (171)
T 1upt_A 22 TILYRLQVGEVV-TTIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS-KSE 96 (171)
T ss_dssp HHHHHHHHSSCC-CCCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHH-HHH
T ss_pred HHHHHHhcCCCC-CcCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 477889999985 478888733 35566665 7899999999999999999999999999999999999999988 566
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+..+.... .+.|+++|+||+|+..... ...+........++..++ .++++||++|.|++++|+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 97 LVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 65554432 5899999999999975321 000111111112233455 7999999999999999999999886
Q ss_pred CC
Q 030337 161 QP 162 (179)
Q Consensus 161 ~~ 162 (179)
++
T Consensus 169 ~~ 170 (171)
T 1upt_A 169 SR 170 (171)
T ss_dssp TC
T ss_pred hc
Confidence 53
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.4e-24 Score=151.53 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=113.5
Q ss_pred eeehhhhhCC-CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSL-GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+. |...+.||++ .....+.+++ +.+.||||+|++++...+..+++++|++++|||++++.+++.+ ..
T Consensus 36 sli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~ 111 (190)
T 2h57_A 36 TIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA-KE 111 (190)
T ss_dssp HHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHH-HH
T ss_pred HHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HH
Confidence 4678888887 7888999998 3345566665 7899999999999999999999999999999999999999998 66
Q ss_pred HHHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH--H---hCCCeEEEeccCCCCcHHHHH
Q 030337 82 WIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK--L---IGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 82 ~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~e~Sa~~~~~i~~~f 152 (179)
|+..+.... .+.|+++|+||+|+... ...++..+.+. . .++ .++++||++|.|++++|
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW-HICASDAIKGEGLQEGV 178 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHH
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-EEEEccCCCCcCHHHHH
Confidence 766665443 47999999999999652 34445555543 1 244 79999999999999999
Q ss_pred HHHHHHHh
Q 030337 153 DAAIKVVL 160 (179)
Q Consensus 153 ~~l~~~i~ 160 (179)
++|.+.+.
T Consensus 179 ~~l~~~i~ 186 (190)
T 2h57_A 179 DWLQDQIQ 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99998764
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.5e-24 Score=155.60 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=111.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+.||++..+.. +..+ .+.++||||+|++++..++..+++++|++|+|||++++.+++.+ ..|
T Consensus 37 sli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~ 112 (188)
T 1zd9_A 37 TFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS-KNE 112 (188)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHH-HHH
Confidence 4788999999999999999876542 3334 48899999999999999999999999999999999999999998 567
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+... . .+.|+++|+||+|+.... ..++..... ...+. .++++||++|.|++++|++|
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 113 LHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEEEEECCCCCCHHHHHHHH
Confidence 6665443 2 589999999999996532 212211111 11233 68999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
++.+..
T Consensus 180 ~~~~~~ 185 (188)
T 1zd9_A 180 IQHSKS 185 (188)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 987654
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=2.1e-23 Score=149.05 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=112.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+. ...+.||+|.. .+.+.+++ +.+++|||||++++...+..+++++|++++|||++++.+++.+ ..|
T Consensus 33 sl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~ 107 (186)
T 1ksh_A 33 TILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC-QRE 107 (186)
T ss_dssp HHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHH
Confidence 4678888888 78889998833 34555665 7899999999999999999999999999999999999999998 667
Q ss_pred HHHHhhc--CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+... ..+.|+++|+||+|+.... ..++..+... ..++ +++++||++|.|++++|+++
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 108 LQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEEEeeCCCCCCHHHHHHHH
Confidence 6666543 2579999999999996532 2222222221 2344 79999999999999999999
Q ss_pred HHHHhCC
Q 030337 156 IKVVLQP 162 (179)
Q Consensus 156 ~~~i~~~ 162 (179)
.+.+.+.
T Consensus 175 ~~~i~~~ 181 (186)
T 1ksh_A 175 LDDISSR 181 (186)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9988653
No 92
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.91 E-value=2e-24 Score=166.09 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=113.2
Q ss_pred eeehhhhhCCCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-hHHHHHH
Q 030337 3 FIYIICNYSLGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK 80 (179)
Q Consensus 3 ~l~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 80 (179)
+|+.+|+.+.|. ++|.||+|+.+...+..++ .++|||| +++|+.+++.+++++|++|+|||++++. +++.+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 689999999999 9999999988775433333 6899999 9999999999999999999999999998 78877 8
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC--CCeEEEeccCCCCcHHHHHHHHHH
Q 030337 81 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 81 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.|+..++. .++|++||+||+|+.++.. + +++.++++.++ . .++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 89887765 3799999999999965321 2 45677777776 5 8999999999999999988764
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=1.3e-24 Score=156.59 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=104.2
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|. .+.||++. ....+..++ +.+++|||+|++++...+..+++++|++++|||++++.+|+.+ ..|
T Consensus 44 sLi~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~ 118 (192)
T 2b6h_A 44 TILYKLKLGEIV-TTIPTIGF-NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES-ADE 118 (192)
T ss_dssp HHHHHHCSSCCE-EEEEETTE-EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHHhCCcc-ccCCcCce-eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 467888888886 46888873 234455555 8899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHH-H----HHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L----RKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|+++|+||+|+.+.. ..++... + +...++ +++++||++|.|++++|++|
T Consensus 119 l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 119 LQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHH
T ss_pred HHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEEECcCCCcCCHHHHHHHH
Confidence 77665432 579999999999996532 1111111 1 112233 68999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
++.+.+
T Consensus 186 ~~~i~~ 191 (192)
T 2b6h_A 186 SHELSK 191 (192)
T ss_dssp HHHTTT
T ss_pred HHHHhc
Confidence 987753
No 94
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=3.6e-25 Score=170.59 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=110.8
Q ss_pred eeehhhhhCCCCC---cccCceeeceeeEEEECCeEEEEEEEeCCCCccccc---cCcccccCccEEEEEEeCCCh--hh
Q 030337 3 FIYIICNYSLGKQ---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVFILAFSLISK--AS 74 (179)
Q Consensus 3 ~l~~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~i~v~d~~~~--~s 74 (179)
+|+.++.++.+.. .+.||+|..+.. ++ ..++++||||+|||+|+. .++.|+++++++|+|||++++ ++
T Consensus 14 SLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~ 89 (331)
T 3r7w_B 14 SICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINA 89 (331)
T ss_dssp HHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHH
T ss_pred HHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHH
Confidence 3555555543322 367899876653 23 348999999999999964 357899999999999999998 33
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH----hCCCeEEEeccCCCCcHHH
Q 030337 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~i~~ 150 (179)
++.+ ..|+..+....+++|++|||||+|+..+... ....+.+..++++++++. .++ .|+||||++ .+|.+
T Consensus 90 ~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~~~R~V~~~~~~~la~~~~~~~~i-~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 90 ITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VDAQRDIMQRTGEELLELGLDGVQV-SFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HHHHHHHHHHHHHTTSSSSCSCCCE-EEECCCSSS-SHHHH
T ss_pred HHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hhHHHHhhHHHHHHHHhhcccccCc-eEEEeccCC-CcHHH
Confidence 3333 3445555555678999999999999753200 000124667777888885 566 899999998 59999
Q ss_pred HHHHHHHHHhCCchhh
Q 030337 151 VFDAAIKVVLQPPKQK 166 (179)
Q Consensus 151 ~f~~l~~~i~~~~~~~ 166 (179)
+|..+++.++......
T Consensus 164 AFs~iv~~li~~~~~l 179 (331)
T 3r7w_B 164 AFSRIVQKLIPELSFL 179 (331)
T ss_dssp HHHHHHTTSSTTHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 9999999888655443
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=8.3e-24 Score=150.78 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=110.4
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.| ..+.||+|..+ +.+.+++ +.+++|||+|++++..++..+++++|++++|||++++.+|+.+ ..|
T Consensus 36 sli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~ 110 (181)
T 2h17_A 36 TILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REE 110 (181)
T ss_dssp HHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHH-HHH
T ss_pred HHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 47889999999 77889998443 5566666 8899999999999999999999999999999999999999998 666
Q ss_pred HHHHhhc--CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+... ..+.|+++|+||+|+... ...++..+... ..++ .++++||++|.|++++|++|
T Consensus 111 ~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 111 LYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHH
Confidence 6666544 258999999999999652 22333333321 2333 79999999999999999999
Q ss_pred HHH
Q 030337 156 IKV 158 (179)
Q Consensus 156 ~~~ 158 (179)
++.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 764
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=4e-24 Score=153.24 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=109.3
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+ +.||+|.. ...+.+++ +.+++|||||++++...+..+++++|++++|||++++.+++.+ ..|
T Consensus 37 sli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~ 111 (189)
T 2x77_A 37 SILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA-KHE 111 (189)
T ss_dssp HHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHH-HHH
T ss_pred HHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHH-HHH
Confidence 4677888888864 78888732 34555665 7899999999999999999999999999999999999999998 566
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHH-----HHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|+++|+||+|+.... ..++... .+...++ +++++||++|.|++++|+++
T Consensus 112 ~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 112 LYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp HHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEEEccCCCccCHHHHHHHH
Confidence 66554432 579999999999996532 1112111 1222344 79999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
.+.+.+
T Consensus 179 ~~~i~~ 184 (189)
T 2x77_A 179 VERLRE 184 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.90 E-value=5.6e-25 Score=157.43 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=108.6
Q ss_pred eeehhhhhC--CCCCcccCceeecee-eEEEE---CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh-hhH
Q 030337 3 FIYIICNYS--LGKQDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASY 75 (179)
Q Consensus 3 ~l~~~~~~~--~f~~~~~pt~~~~~~-~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~ 75 (179)
+|+.+++.+ .|...+.||+|..+. +.+.+ ++..+.+++|||+|+++|..+++.++++++++++|||++++ .++
T Consensus 17 tLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~ 96 (184)
T 2zej_A 17 TLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV 96 (184)
T ss_dssp HHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHH
T ss_pred HHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHH
Confidence 467788874 688889999986554 44433 34678999999999999999999999999999999999997 589
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCcccc---HHHHHHHHHHhCCC---eEEEeccCCCC-cH
Q 030337 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT---TAQGEELRKLIGSP---AYIECSSKTQQ-NV 148 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~e~Sa~~~~-~i 148 (179)
+.+ ..|+..+....++.|+++||||+|+..... ++ .+.+..+++.+++. .++++||++|. ++
T Consensus 97 ~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 97 DAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL 165 (184)
T ss_dssp HTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred HHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence 888 789988877666899999999999965432 22 34455666667773 38999999997 99
Q ss_pred HHHHHHHHHHHhCC
Q 030337 149 KAVFDAAIKVVLQP 162 (179)
Q Consensus 149 ~~~f~~l~~~i~~~ 162 (179)
+++++.+.+.+.+.
T Consensus 166 ~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 166 AKLRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887653
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=8.9e-24 Score=150.86 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=107.7
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.| ..+.||+|. ..+.+.+++ +.+++|||+|++.+...+..++++++++++|||++++.+|+.+ ..|
T Consensus 31 sL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~ 105 (181)
T 1fzq_A 31 TLLKQLASEDI-SHITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET-GQE 105 (181)
T ss_dssp HHHHHHCCSCC-EEEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHhcCCC-CcccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH-HHH
Confidence 46777877755 567899883 335566665 7899999999999999999999999999999999999999998 667
Q ss_pred HHHHhhc-C-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+... . .+.|+++|+||+|+.+.. ..++..+.. ...++ .++++||++|.|++++|+++
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 106 LTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp HHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCce-EEEEccCCCCCCHHHHHHHH
Confidence 6665433 2 579999999999997532 222222211 11233 79999999999999999999
Q ss_pred HHHHhC
Q 030337 156 IKVVLQ 161 (179)
Q Consensus 156 ~~~i~~ 161 (179)
++.+.+
T Consensus 173 ~~~~~~ 178 (181)
T 1fzq_A 173 CKNVNA 178 (181)
T ss_dssp HHTC--
T ss_pred HHHHHh
Confidence 987754
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=6e-24 Score=153.50 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=110.8
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEE--E-CCeEEEEEEEeCCCCccccccC---cccccCccEEEEEEeCCCh--hh
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVV--V-DGSTVNLGLWDTAGQEDYNRLR---PLSYRGADVFILAFSLISK--AS 74 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~--~-~~~~~~~~i~D~~G~~~~~~~~---~~~~~~~~~~i~v~d~~~~--~s 74 (179)
|+. ++.+.|.+. +|++..+. +.+. + ++..+.++||||+|+++|.... ..++++++++|+|||++++ ++
T Consensus 36 Li~-~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 36 IQK-VVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp HHH-HHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred HHH-HHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHH
Confidence 444 556677766 56654443 3332 3 3677899999999999987765 7899999999999999998 67
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH----HhCCCeEEEeccCCCCcHHH
Q 030337 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~i~~ 150 (179)
++.+ ..|+..+....+++|++|||||+|+.++... ....+.+..+.+..+++ ..++ .++++||++ .||++
T Consensus 113 ~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~-~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 113 LTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHK---IETQRDIHQRANDDLADAGLEKLHL-SFYLTSIYD-HSIFE 186 (196)
T ss_dssp HHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHH---HHHHHHHHHHHHHHHHHTTCTTSCE-EEEEECTTS-THHHH
T ss_pred HHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhh---hHHHhHHHHHHHHHHHHhhhhcCCc-ceEEEEech-hhHHH
Confidence 7777 6777777655678999999999998652100 00012356666778888 6676 899999999 99999
Q ss_pred HHHHHHHHHh
Q 030337 151 VFDAAIKVVL 160 (179)
Q Consensus 151 ~f~~l~~~i~ 160 (179)
+|+.+++.++
T Consensus 187 ~f~~l~~~li 196 (196)
T 3llu_A 187 AFSKVVQKLI 196 (196)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=1.2e-22 Score=147.03 Aligned_cols=147 Identities=30% Similarity=0.501 Sum_probs=126.1
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++....|...+.||+|..+ ...+.+++..+.+++||++|+++++..+..++++++++++|||++++.+++++ ..
T Consensus 20 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 98 (199)
T 2f9l_A 20 NLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ER 98 (199)
T ss_dssp HHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHH-HH
Confidence 46788999999999999998555 47788899999999999999999999999999999999999999999999988 67
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
|+..+.... .+.|+++|+||+|+.+... +..+++..++...++ .++++||+++.|++++|+++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 99 WLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 887776654 4789999999999976443 667788999999998 8999999999999999999999876
Q ss_pred C
Q 030337 161 Q 161 (179)
Q Consensus 161 ~ 161 (179)
.
T Consensus 168 ~ 168 (199)
T 2f9l_A 168 R 168 (199)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=2.7e-22 Score=144.42 Aligned_cols=145 Identities=30% Similarity=0.505 Sum_probs=127.7
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++....|...+.||+|..+ ...+.+++..+.+++||++|++++..++..++++++++++|||+++..+|+++ ..
T Consensus 44 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~ 122 (191)
T 1oix_A 44 NLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ER 122 (191)
T ss_dssp HHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HH
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHH-HH
Confidence 46788999999999999999666 47888999999999999999999999999999999999999999999999988 67
Q ss_pred HHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 82 WIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 82 ~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
|+..+.... .+.|+++++||+|+.+... +..+.+..++...++ .++++||+++.|++++|+++.+.+
T Consensus 123 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 123 WLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 887776644 4789999999999976443 667788999999998 899999999999999999998875
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=3.5e-23 Score=147.34 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=107.1
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.| ..+.||+|.. ...+.+++ +.+.+|||+|++++...+..+++++|++++|||++++.+++.+ ..|
T Consensus 33 sli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~ 107 (183)
T 1moz_A 33 TILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA-SKE 107 (183)
T ss_dssp HHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHH-HHH
T ss_pred HHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHH
Confidence 46778888888 6788998833 35566665 8899999999999999999999999999999999999999998 677
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-----hCCCeEEEeccCCCCcHHHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+..+.... .+.|+++|+||+|+... ...++..+.... .+. +++++||++|.|++++|+++
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 108 LHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp HHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEEEEBGGGTBTHHHHHHHH
T ss_pred HHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHH
Confidence 77766543 58999999999999653 222333332221 222 68999999999999999999
Q ss_pred HHHHh
Q 030337 156 IKVVL 160 (179)
Q Consensus 156 ~~~i~ 160 (179)
.+.+.
T Consensus 175 ~~~~~ 179 (183)
T 1moz_A 175 IDVIK 179 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=5.2e-24 Score=166.67 Aligned_cols=150 Identities=18% Similarity=0.144 Sum_probs=108.7
Q ss_pred CCCCCcccCceeeceeeE----------EEECC----eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCC------
Q 030337 11 SLGKQDYVPTVFDNFSAN----------VVVDG----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI------ 70 (179)
Q Consensus 11 ~~f~~~~~pt~~~~~~~~----------~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~------ 70 (179)
..|.++|.||+++.+... +.+++ +.+.++||||+|+++++.+|..|+++++++|+|||++
T Consensus 144 ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l 223 (354)
T 2xtz_A 144 RLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTL 223 (354)
T ss_dssp HHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBC
T ss_pred HHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccc
Confidence 346788999988665422 22444 6799999999999999999999999999999999998
Q ss_pred ----ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccc-c------CCCC----CccccHHHHHHHHHHh-
Q 030337 71 ----SKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFF-I------DHPG----AVPITTAQGEELRKLI- 132 (179)
Q Consensus 71 ----~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~-~------~~~~----~~~~~~~~~~~~~~~~- 132 (179)
+..+|++. ..|+..+.... +++|++|||||+|+..+.... + .... ..+.+.+++..++...
T Consensus 224 ~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f 302 (354)
T 2xtz_A 224 FEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF 302 (354)
T ss_dssp SSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHH
Confidence 78899998 67777776542 689999999999996543100 0 0000 0122356677764431
Q ss_pred -------------C-CCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 133 -------------G-SPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 133 -------------~-~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+ ...+++|||+++.||.++|+++.+.+++
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 303 EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 1 2246899999999999999999998864
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=9.2e-24 Score=158.82 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=112.2
Q ss_pred eeehhhhh---CCCCCcccCce-eecee-eEEE--------------ECCeEEEEEEEe---------------------
Q 030337 3 FIYIICNY---SLGKQDYVPTV-FDNFS-ANVV--------------VDGSTVNLGLWD--------------------- 42 (179)
Q Consensus 3 ~l~~~~~~---~~f~~~~~pt~-~~~~~-~~~~--------------~~~~~~~~~i~D--------------------- 42 (179)
+|+.+|+. +.|...+.||+ +..+. +.+. +++..+.++|||
T Consensus 43 sLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~ 122 (255)
T 3c5h_A 43 CLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPY 122 (255)
T ss_dssp HHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCH
T ss_pred HHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccc
Confidence 57889999 77888899987 54332 3222 467889999999
Q ss_pred --CCCCccccccCccccc---------------------CccEEEEEEeCCCh--hhHHHHHHHHHHHHhhc-C-CCCcE
Q 030337 43 --TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK--ASYENVAKKWIPELRHY-A-PGVPI 95 (179)
Q Consensus 43 --~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~-~-~~~pi 95 (179)
++|+++|..++..+++ ++|++|+|||++++ .+|+.+ ..|+..+... . .++|+
T Consensus 123 ~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~~~~pi 201 (255)
T 3c5h_A 123 IKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPI 201 (255)
T ss_dssp HHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHHTTCCE
T ss_pred cccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhccCCCCE
Confidence 8899999999999998 89999999999999 999998 7898888765 2 57999
Q ss_pred EEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 96 ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 96 ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+|||||+|+..... + +++..+++.. ++ .++++||++|.|++++|++|++.+.
T Consensus 202 ilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 202 VVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 99999999965332 3 5677777764 66 8999999999999999999998763
No 105
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=8.3e-23 Score=159.85 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=109.3
Q ss_pred CCCCcccCceeece----------eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC----------
Q 030337 12 LGKQDYVPTVFDNF----------SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---------- 71 (179)
Q Consensus 12 ~f~~~~~pt~~~~~----------~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------- 71 (179)
.|.++|.||..+.+ .+.+.+++ +.+++|||+|+++++..|..++++++++|+|||+++
T Consensus 161 i~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~ 238 (353)
T 1cip_A 161 IAQPNYIPTQQDVLRTRVKTTGIVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238 (353)
T ss_dssp HTSTTCCCCHHHHHTCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEE
T ss_pred HhcCCCCCCccccccccCceeceEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccch
Confidence 45666777654422 23344554 889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccc-----cCCCCCccccHHHHHHHHHH-----------hC
Q 030337 72 KASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGEELRKL-----------IG 133 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~ 133 (179)
..++++. ..|+..+.... .++|++|+|||+|+..+.... ......-+++.+++..++.. .+
T Consensus 239 ~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~ 317 (353)
T 1cip_A 239 MNRMHES-MKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE 317 (353)
T ss_dssp EEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCC
T ss_pred hhhHHHH-HHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCc
Confidence 5678888 56777766532 589999999999996432100 00011113667888888773 34
Q ss_pred CCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 134 SPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 134 ~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+ .+++|||+++.||.++|+++.+.+++
T Consensus 318 ~-~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 318 I-YTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp E-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred e-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence 4 78999999999999999999998864
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=1e-22 Score=148.72 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=103.9
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCe-EEEEEEEeCCCCccccc-cCcccccCccEEEEEEeCCChh-hHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKA-SYENVA 79 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 79 (179)
+|+.+++.+.|.+.+.|+..+... +.+++. .+.++||||||++++.. ++..++++++++|+|||+++.. ++....
T Consensus 22 sli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 99 (214)
T 2fh5_B 22 LLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA 99 (214)
T ss_dssp HHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHH
T ss_pred HHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHH
Confidence 478899999999988766543332 556644 68999999999999988 7888999999999999999964 566664
Q ss_pred HHHHHHHhhc---CCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHH--------------------------
Q 030337 80 KKWIPELRHY---APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-------------------------- 130 (179)
Q Consensus 80 ~~~~~~i~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 130 (179)
..|...+... ..+.|++||+||+|+..... .....+.......
T Consensus 100 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~ 171 (214)
T 2fh5_B 100 EFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--------AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 171 (214)
T ss_dssp HHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--------HHHHHHHHHHHHHHHHHHCC------------CCCSSCT
T ss_pred HHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--------HHHHHHHHHHHHHHHhccchhccccccCCccccccccCC
Confidence 5666655542 24799999999999975431 0000111111111
Q ss_pred -------Hh--CCCeEEEeccCCC------CcHHHHHHHHHHHH
Q 030337 131 -------LI--GSPAYIECSSKTQ------QNVKAVFDAAIKVV 159 (179)
Q Consensus 131 -------~~--~~~~~~e~Sa~~~------~~i~~~f~~l~~~i 159 (179)
.+ ++ .|++|||++| .||+++|++|.+.+
T Consensus 172 ~~~~~~~~~~~~~-~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 172 GKEFEFSQLPLKV-EFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp TSCCCGGGSSSCE-EEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred CCCcccccCCCcE-EEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 01 33 7999999999 99999999998753
No 107
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=8.6e-23 Score=157.89 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=113.4
Q ss_pred hhhhhCCCCCc-------ccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCC--------
Q 030337 6 IICNYSLGKQD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI-------- 70 (179)
Q Consensus 6 ~~~~~~~f~~~-------~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~-------- 70 (179)
.|+....|.|. +.||+|. ....+.+++ +.++||||+||++++.+|..|+++++++|+|||++
T Consensus 133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi-~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d 209 (327)
T 3ohm_A 133 DRVADPSYLPTQQDVLRVRVPTTGI-IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209 (327)
T ss_dssp HHHHSTTCCCCHHHHTTCCCCCCSE-EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSS
T ss_pred HHHhccCCCccccchhcccCceeeE-EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccc
Confidence 46677778777 7788883 234455555 89999999999999999999999999999999665
Q ss_pred --ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccccc-----cCCC-CCccccHHHHHHHHH----------
Q 030337 71 --SKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFF-----IDHP-GAVPITTAQGEELRK---------- 130 (179)
Q Consensus 71 --~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~---------- 130 (179)
+..++++. ..|+..+.... .++|++|+|||+|+..+.-.. .... ...+.+.+++..++.
T Consensus 210 ~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 210 SDNENRMEES-KALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp CTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred cccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 66788877 45666655432 589999999999997643100 0000 012356778887743
Q ss_pred HhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 131 LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 131 ~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..++ .+++|||+++.||..+|..+.+.+++.
T Consensus 289 ~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 289 DKII-YSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 3444 688999999999999999999998754
No 108
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=8.5e-23 Score=161.70 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=109.0
Q ss_pred CCCCcccCceeecee----------eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC----------
Q 030337 12 LGKQDYVPTVFDNFS----------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---------- 71 (179)
Q Consensus 12 ~f~~~~~pt~~~~~~----------~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------- 71 (179)
.+.++|.||+++.+. +.+.+++ +.++||||+|+++++.+|..|+++++++|+|||+++
T Consensus 185 i~~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~ 262 (402)
T 1azs_C 185 IKQDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262 (402)
T ss_dssp HTCTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSC
T ss_pred hhccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccc
Confidence 457888888765442 3345555 899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCcccccc---ccc-------C---------CC-CCccccHHHHHHHH
Q 030337 72 KASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQ---FFI-------D---------HP-GAVPITTAQGEELR 129 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~---~~~-------~---------~~-~~~~~~~~~~~~~~ 129 (179)
..+|+++ ..|+..+.... .++|++|||||+|+..+.. .++ - .+ .....+.+++..++
T Consensus 263 ~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi 341 (402)
T 1azs_C 263 TNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI 341 (402)
T ss_dssp SBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHH
Confidence 8899998 67888776542 6899999999999965432 000 0 00 00111245566553
Q ss_pred -----HH--------hCCCeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 130 -----KL--------IGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 130 -----~~--------~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
.. .++ .+++|||+++.||.++|.++.+.+++..
T Consensus 342 ~~kF~~~~~~~~~~~~~~-~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 342 RDEFLRISTASGDGRHYC-YPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHTSCTTSSCE-EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCccc-EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 22 133 5789999999999999999988887543
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=1.3e-21 Score=138.42 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=104.2
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|.+.+.|+++..+ ...+.+++. .+.+|||+|++++..++..+++.+|++++|||++++...+.. .
T Consensus 23 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~ 98 (178)
T 2lkc_A 23 TLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV--E 98 (178)
T ss_dssp HHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH--H
T ss_pred HHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--H
Confidence 47889999999998888887544 366777874 577999999999999999999999999999999984333322 1
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC--------CeEEEeccCCCCcHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS--------PAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa~~~~~i~~~f~ 153 (179)
++..+.. .+.|+++|+||+|+... ..++.....+..+. ..++++||++|.|++++|+
T Consensus 99 ~l~~~~~--~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 99 AINHAKA--ANVPIIVAINKMDKPEA-------------NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHHHHGG--GSCCEEEEEETTTSSCS-------------CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred HHHHHHh--CCCCEEEEEECccCCcC-------------CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 2223332 37899999999999652 11222222222221 3799999999999999999
Q ss_pred HHHHHHhC
Q 030337 154 AAIKVVLQ 161 (179)
Q Consensus 154 ~l~~~i~~ 161 (179)
+|++.+..
T Consensus 164 ~l~~~~~~ 171 (178)
T 2lkc_A 164 MILLVSEM 171 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 99987754
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=153.74 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=102.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.++..+.|.+.+ ||++..+. .+..++ +.++||||+|++.|..++..+++++|++|+|||++++.+|+.+...|
T Consensus 180 sLl~~l~~~~~~~~~-pT~~~~~~-~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 180 TILYKLKLGEIVTTI-PTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp HHHHHTCSSCCEEEE-EETTEEEE-EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCcc-cccceEEE-EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 477888888887654 78774432 333444 88999999999999999999999999999999999999999984444
Q ss_pred HHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCCCCcHHHHHHHHH
Q 030337 83 IPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKTQQNVKAVFDAAI 156 (179)
Q Consensus 83 ~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 156 (179)
...+.... +++|++||+||+|+.... ..++..... ...++ .++++||++|.||+++|++|+
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCE-EEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCC-EEEEEECCCCcCHHHHHHHHH
Confidence 44444433 589999999999997532 111211111 11233 689999999999999999999
Q ss_pred HHHhC
Q 030337 157 KVVLQ 161 (179)
Q Consensus 157 ~~i~~ 161 (179)
+.+.+
T Consensus 323 ~~l~~ 327 (329)
T 3o47_A 323 NQLRN 327 (329)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 98865
No 111
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=9.2e-22 Score=154.43 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=100.0
Q ss_pred CCCCcccCceeecee----------eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC----------
Q 030337 12 LGKQDYVPTVFDNFS----------ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---------- 71 (179)
Q Consensus 12 ~f~~~~~pt~~~~~~----------~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------- 71 (179)
.+.++|.||.++.+. +.+.+++ +.++||||+|++.++..|..++++++++|+|||+++
T Consensus 169 i~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~ 246 (362)
T 1zcb_A 169 LGVPDYIPSQQDILLARRPTKGIHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246 (362)
T ss_dssp HTSTTCCCCHHHHHHCCCCCSSEEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEE
T ss_pred HhcCCCCCChhhhhhccCCccceEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcccccccccccc
Confidence 345666776543321 3344554 889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCcccccccc-----cCCCCC-ccccHHHHHHHHH-----------Hh
Q 030337 72 KASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFF-----IDHPGA-VPITTAQGEELRK-----------LI 132 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~-----------~~ 132 (179)
..++++. ..|+..+... ..++|++|++||+|+..+.... ...... .+++.+++..++. ..
T Consensus 247 ~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~ 325 (362)
T 1zcb_A 247 TNRLTES-LNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQR 325 (362)
T ss_dssp EEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--
T ss_pred ccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence 7899988 5666666543 2689999999999997432100 000011 1256677777662 23
Q ss_pred CCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 133 GSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 133 ~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
++ .+++|||+++.||.++|+++.+.+++
T Consensus 326 ~~-~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 326 PL-YHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence 34 78999999999999999999998864
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=9.7e-22 Score=151.49 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=117.8
Q ss_pred eeehhhhhC--CCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCccc-----cccCcccccCccEEEEEEeCCChhh
Q 030337 3 FIYIICNYS--LGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKAS 74 (179)
Q Consensus 3 ~l~~~~~~~--~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s 74 (179)
+|+.++.++ .+. +.+.||++..+. .+.+++ .+.++||||||++++ ...+..++++++++|+|||++++.+
T Consensus 18 SLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s 95 (307)
T 3r7w_A 18 SMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV 95 (307)
T ss_dssp HHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH
T ss_pred HHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh
Confidence 467777777 444 467888886555 234444 589999999999998 7788889999999999999999999
Q ss_pred HHHHHHHHHH---HHhhcCCCCcEEEEEeCCCcccccccccCCCCCcc----ccHHHHHHHHHHhCC--CeEEEeccCCC
Q 030337 75 YENVAKKWIP---ELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP----ITTAQGEELRKLIGS--PAYIECSSKTQ 145 (179)
Q Consensus 75 ~~~~~~~~~~---~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~e~Sa~~~ 145 (179)
|+++ ..|.. .+....+++|+++||||+|+..... +. +..+++.++++.+|. .+++++||++
T Consensus 96 ~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~--------r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 96 LKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDK--------REELFQIMMKNLSETSSEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp HHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH--------HHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred HHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhh--------hhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence 9988 56644 4444456899999999999976221 12 455778899999983 5899999999
Q ss_pred CcHHHHHHHHHHHHhCCch
Q 030337 146 QNVKAVFDAAIKVVLQPPK 164 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~~~~~ 164 (179)
.++.++|..+++.++....
T Consensus 166 ~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 166 ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp SHHHHHHHHHHHTTCSCHH
T ss_pred ChHHHHHHHHHHHHcCCHH
Confidence 8999999999998765443
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=1.4e-21 Score=151.65 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=109.8
Q ss_pred hhhhhCCCCCc-------ccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCC--------
Q 030337 6 IICNYSLGKQD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI-------- 70 (179)
Q Consensus 6 ~~~~~~~f~~~-------~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~-------- 70 (179)
.|+....|.|. +.||+|... ..+.++ .+.++||||+||++++.+|..|+++++++|+|||++
T Consensus 127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~-~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e 203 (340)
T 4fid_A 127 KRIAMEDYVPTEEDLIHNRTKTTGIHE-YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYE 203 (340)
T ss_dssp HHHSSTTCCCCHHHHHHSCCCCCSCEE-EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC-
T ss_pred HHHhcccCCccccceeecccceeeeEE-EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccc
Confidence 45566677666 677777322 333334 489999999999999999999999999999999999
Q ss_pred --ChhhHHHHHHHHHHHHhhc-C-CCCcEEEEEeCCCcccccccc-----cCCCCCccccHHHHHHHHHHhC--------
Q 030337 71 --SKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGEELRKLIG-------- 133 (179)
Q Consensus 71 --~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-------- 133 (179)
+..++++. ..|+..+... . .++|++|+|||+|+..+.-.. ......-....+++..++....
T Consensus 204 ~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~ 282 (340)
T 4fid_A 204 DGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEE 282 (340)
T ss_dssp -CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhh
Confidence 77899888 4565555443 2 689999999999997532110 0001111124566655544322
Q ss_pred ------------------CCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 134 ------------------SPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 134 ------------------~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
...++++||+++.||..+|..+.+.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 283 MNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp SCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 1267899999999999999999999886
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=8.6e-21 Score=154.84 Aligned_cols=141 Identities=15% Similarity=0.188 Sum_probs=107.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 82 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 82 (179)
+|+.+++.+.|.. +.||+|..+. .+.+ +.+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+ ..|
T Consensus 337 sLl~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~-~~~ 411 (497)
T 3lvq_E 337 TILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQE 411 (497)
T ss_dssp HHHHHHHHSSCCC-CCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHH-HHH
T ss_pred HHHHHHhcCCCCC-cCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHH-HHH
Confidence 4788999998764 5789885443 2333 347899999999999999999999999999999999999999999 566
Q ss_pred HHHHhhcC--CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-------CeEEEeccCCCCcHHHHHH
Q 030337 83 IPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 83 ~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~i~~~f~ 153 (179)
+..+.... .++|++||+||+|+.... ..++ +.+..+. ..++++||++|.||+++|+
T Consensus 412 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~---~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 412 LHRIINDREMRDAIILIFANKQDLPDAM------------KPHE---IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp HHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHH---HHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHH---HHHHhchhhhhcCCeEEEEEECCCCCCHHHHHH
Confidence 66554332 589999999999996532 2222 2222222 2599999999999999999
Q ss_pred HHHHHHhCCc
Q 030337 154 AAIKVVLQPP 163 (179)
Q Consensus 154 ~l~~~i~~~~ 163 (179)
+|.+.+....
T Consensus 477 ~l~~~~~~~~ 486 (497)
T 3lvq_E 477 WLTSNYKSKL 486 (497)
T ss_dssp HHHHHCC---
T ss_pred HHHHHHHhcC
Confidence 9999775433
No 115
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=7e-21 Score=133.78 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=100.4
Q ss_pred eeehhhhhCCCCCcccCceee-ceeeEEEECCeEEEEEEEeCCCCcccccc------Cccccc--CccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~~~~i~v~d~~~~~ 73 (179)
+|+.++..+.|...+.|++.. .....+.+++ ..+++|||+|++++... ...+++ +++++++|+|+++.+
T Consensus 18 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 95 (165)
T 2wji_A 18 TIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE 95 (165)
T ss_dssp HHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH
T ss_pred HHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh
Confidence 467888888876666676543 3345566666 67999999999987632 355665 899999999999865
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+. ..|+..+.+. +.|+++|+||+|+..... +.. ++..+++.+++ +++++||++|.|++++|+
T Consensus 96 ~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 96 RN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CEEECBGGGTBSHHHHHH
T ss_pred Hh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CEEEEEcCCCCCHHHHHH
Confidence 43 3466666553 799999999999965332 322 36778888887 899999999999999999
Q ss_pred HHHHHH
Q 030337 154 AAIKVV 159 (179)
Q Consensus 154 ~l~~~i 159 (179)
++.+.+
T Consensus 158 ~l~~~~ 163 (165)
T 2wji_A 158 AISIAV 163 (165)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998865
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=3e-21 Score=158.90 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=107.8
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEE-------EE--CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANV-------VV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~-------~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 73 (179)
+|+.++..+.|.+.+.||+|..+.... .+ ++..+.+.+|||+|++.+..++..++++++++|+|||+++.+
T Consensus 56 SLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~ 135 (535)
T 3dpu_A 56 SLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS 135 (535)
T ss_dssp HHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG
T ss_pred HHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch
Confidence 478899999999999999997765332 12 234689999999999999999999999999999999998764
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
.+ ..|+..+....++.|+++||||+|+..... +..+.+..++...+. +++++||++|.||+++|+
T Consensus 136 ---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 136 ---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN-RFHRISCKNGDGVESIAK 200 (535)
T ss_dssp ---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-CEEECCC-----CTTHHH
T ss_pred ---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-ceEEEecCcccCHHHHHH
Confidence 34 578888888777899999999999976443 677888888888887 799999999999999999
Q ss_pred HHHHHHhCCc
Q 030337 154 AAIKVVLQPP 163 (179)
Q Consensus 154 ~l~~~i~~~~ 163 (179)
.+.+.+....
T Consensus 201 ~l~~~~~~~~ 210 (535)
T 3dpu_A 201 SLKSAVLHPD 210 (535)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHHhccc
Confidence 9999887654
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=5e-20 Score=135.93 Aligned_cols=147 Identities=8% Similarity=0.003 Sum_probs=100.4
Q ss_pred eeehhhhhCCCCCcccCce-eeceeeEEEECCeEEEEEEEeCCCC------cc----ccccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGKQDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ------ED----YNRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~-~~~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.|.....|.. ..........++ +.+.||||||+ ++ +.. +..++..++++|+|||+++
T Consensus 44 sLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 44 SFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISE 120 (228)
T ss_dssp HHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTC
T ss_pred HHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEeccc
Confidence 4677888887753322221 111222333344 78999999999 33 222 2345788999999999999
Q ss_pred hhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHH---HHHHHHHHhC--CCeEEEeccCCC
Q 030337 72 KASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA---QGEELRKLIG--SPAYIECSSKTQ 145 (179)
Q Consensus 72 ~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~e~Sa~~~ 145 (179)
+.+|+.. ...|+..+....++.|+++|+||+|+..... +..+ .+..+++..+ . .++++||++|
T Consensus 121 ~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g 189 (228)
T 2qu8_A 121 QCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDNVKNPI-KFSSFSTLTG 189 (228)
T ss_dssp TTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHHCCSCE-EEEECCTTTC
T ss_pred ccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHhcCCCc-eEEEEecccC
Confidence 9887522 1356777766556899999999999976442 4433 4566667666 5 8999999999
Q ss_pred CcHHHHHHHHHHHHhCCc
Q 030337 146 QNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~~~~ 163 (179)
.||+++|++|++.+.+.+
T Consensus 190 ~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 190 VGVEQAKITACELLKNDQ 207 (228)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999886543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.80 E-value=1.9e-20 Score=133.68 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=109.0
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCC-----------CccccccCcccccC-ccEEEEEEeCC
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSYRG-ADVFILAFSLI 70 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-~~~~i~v~d~~ 70 (179)
+|+.+++.+.|...+.|++... ...+.++ .+.+||||| ++.+...+..++++ +++++++|++.
T Consensus 16 sli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 90 (190)
T 2cxx_A 16 TLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVV 90 (190)
T ss_dssp HHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEE
T ss_pred HHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEE
Confidence 4788999999998888876422 2333344 589999999 67777777888887 89888889999
Q ss_pred ChhhHHHHHHHHHHH--------H-hhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCC-----
Q 030337 71 SKASYENVAKKWIPE--------L-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP----- 135 (179)
Q Consensus 71 ~~~s~~~~~~~~~~~--------i-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 135 (179)
|+.++..+...|... + .... .+.|+++|+||+|+... ..+.+..+++.++..
T Consensus 91 d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 91 DGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-------------VQEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp ETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-------------HHHHHHHHHHHHTCCGGGHH
T ss_pred cchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc-------------HHHHHHHHHHHhhhhhhccC
Confidence 899998775666542 1 1111 47999999999999642 145678888888873
Q ss_pred -eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 136 -AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 136 -~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.++++||++|.|++++|+++++.+.+.
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 379999999999999999999988643
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.4e-19 Score=125.88 Aligned_cols=136 Identities=20% Similarity=0.133 Sum_probs=93.1
Q ss_pred eeehhhhhCCCC--CcccCceeeceeeEEEECCeEEEEEEEeCCCCccc-------cccCcccccCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~~i~v~d~~~~~ 73 (179)
+|+.++..+.+. ..+.++..+.....+..++. .+.+|||+|++.+ ...+..++++++++++|+|++++.
T Consensus 16 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (161)
T 2dyk_A 16 SLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL 93 (161)
T ss_dssp HHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC
T ss_pred HHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc
Confidence 467788888753 33333333444566667774 6889999999873 334556789999999999999875
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+.... .+...+.. .+.|+++|+||+|+.... +++.+++ ..+...++++||++|.|++++|+
T Consensus 94 ~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~--------------~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 94 TQADY--EVAEYLRR--KGKPVILVATKVDDPKHE--------------LYLGPLY-GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp CHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGG--------------GGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred cHhHH--HHHHHHHh--cCCCEEEEEECcccccch--------------HhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence 54331 23333333 368999999999996532 2233444 56665799999999999999999
Q ss_pred HHHHHH
Q 030337 154 AAIKVV 159 (179)
Q Consensus 154 ~l~~~i 159 (179)
++++.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998864
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.6e-19 Score=129.62 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=91.9
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCC----------CccccccCcccccCc---cEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRLRPLSYRGA---DVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---~~~i~v~d 68 (179)
+|+.+++.+.|.+.+.++.|.... .....++ .+.+||||| ++.+..++..+++++ +++++|+|
T Consensus 38 sli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 114 (195)
T 1svi_A 38 SFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVD 114 (195)
T ss_dssp HHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEE
Confidence 467888988888888888875443 3333444 589999999 777777777787776 99999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccH--HHHHH-HHHHhCCCeEEEeccCCC
Q 030337 69 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT--AQGEE-LRKLIGSPAYIECSSKTQ 145 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~e~Sa~~~ 145 (179)
++++.++.+. .+...+.. .+.|+++|+||+|+..... +.. +++.+ +....+. .++++||++|
T Consensus 115 ~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 179 (195)
T 1svi_A 115 LRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQTLNIDPED-ELILFSSETK 179 (195)
T ss_dssp TTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHTCCTTS-EEEECCTTTC
T ss_pred CCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHHHcccCCC-ceEEEEccCC
Confidence 9998888765 23333333 3789999999999976432 221 22222 2222344 8999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 030337 146 QNVKAVFDAAIKVVL 160 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~ 160 (179)
.|++++|+++.+.+.
T Consensus 180 ~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 180 KGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998763
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=1.7e-19 Score=128.68 Aligned_cols=141 Identities=15% Similarity=0.115 Sum_probs=106.0
Q ss_pred eeehhhhhCCCCCcccCceee-ceeeEEEECCeEEEEEEEeCCCCccccc------cCccccc--CccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR--GADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~ 73 (179)
+|+.++..+.+...+.|++.. .....+.+++ +.+++|||+|++.+.. ++..+++ .++++++|+|.++
T Consensus 22 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-- 97 (188)
T 2wjg_A 22 TIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-- 97 (188)
T ss_dssp HHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--
T ss_pred HHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--
Confidence 467788887776666676653 3345566666 7899999999998753 3455664 5999999999886
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
++.. ..|+..+... +.|+++|+||+|+..... +. ..+..+++.+++ .++++||++|.|++++|+
T Consensus 98 -~~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 98 -LERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-KVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp -HHHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEEECBGGGTBSHHHHHH
T ss_pred -HHHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-CeEEEEecCCCCHHHHHH
Confidence 4444 4666666553 789999999999965432 22 356778888887 899999999999999999
Q ss_pred HHHHHHhCCc
Q 030337 154 AAIKVVLQPP 163 (179)
Q Consensus 154 ~l~~~i~~~~ 163 (179)
++++.+.+..
T Consensus 162 ~i~~~~~~~~ 171 (188)
T 2wjg_A 162 AISIAVKDKK 171 (188)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=7.1e-20 Score=129.61 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=97.9
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC--------cccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.++....+ ...+.+|..+.+...+.+++. .+.+|||+|++++.... ..+++++|++++|||++++
T Consensus 19 tLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 19 SLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT 96 (172)
T ss_dssp HHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC
T ss_pred HHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 46677777664 334444444555677778874 58899999997643211 1358999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHH
Q 030337 73 ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 151 (179)
.+++. ..|+..+.... .++|+++|+||+|+..+.. . +++..+. .++++||++|.|++++
T Consensus 97 ~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~------~~~~~~~-~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 97 DAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------G------MSEVNGH-ALIRLSARTGEGVDVL 156 (172)
T ss_dssp CCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------E------EEEETTE-EEEECCTTTCTTHHHH
T ss_pred CCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------h------hhhccCC-ceEEEeCCCCCCHHHH
Confidence 98874 36777776654 4799999999999954221 0 1112344 7999999999999999
Q ss_pred HHHHHHHHh
Q 030337 152 FDAAIKVVL 160 (179)
Q Consensus 152 f~~l~~~i~ 160 (179)
|+++.+.+.
T Consensus 157 ~~~l~~~~~ 165 (172)
T 2gj8_A 157 RNHLKQSMG 165 (172)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999998764
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=6.7e-19 Score=126.04 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=99.6
Q ss_pred eeehhhhhCCCCCcccCceeeceeeEE-EECCeEEEEEEEeCCC----------CccccccCcccccCc---cEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG----------QEDYNRLRPLSYRGA---DVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~~~~-~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---~~~i~v~d 68 (179)
+|+.+++.+.+ ..+.|+.|....... ..+. .+.+||||| ++.+..++..+++++ +++++|+|
T Consensus 38 sli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d 113 (195)
T 3pqc_A 38 SLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVD 113 (195)
T ss_dssp HHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEec
Confidence 46778888874 455666664443222 2233 477999999 666777777777665 99999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcH
Q 030337 69 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 148 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 148 (179)
++++.+.... .+...+... +.|+++|+||+|+..... +....+++..++...+..+++++||++|.|+
T Consensus 114 ~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 114 GRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp TTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred CCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 9887544432 222233332 689999999999975331 1244456667777656558999999999999
Q ss_pred HHHHHHHHHHHhC
Q 030337 149 KAVFDAAIKVVLQ 161 (179)
Q Consensus 149 ~~~f~~l~~~i~~ 161 (179)
+++|+++.+.+.+
T Consensus 182 ~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 182 SELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987753
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.75 E-value=1.7e-17 Score=127.84 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=108.2
Q ss_pred eeehhhhhCCCCC--cccCceeeceeeEEEECCeEEEEEEEeCCCCcccc----------ccCcccccCccEEEEEEeCC
Q 030337 3 FIYIICNYSLGKQ--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------RLRPLSYRGADVFILAFSLI 70 (179)
Q Consensus 3 ~l~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~~~~~i~v~d~~ 70 (179)
+|+.+++...+.. ....|...........+ ....+.+|||||+..+. ..+..+++++|++++|+|++
T Consensus 25 TLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~ 103 (308)
T 3iev_A 25 TLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDAT 103 (308)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCC
Confidence 4677888887742 22223222222333334 13789999999996654 45566789999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHH
Q 030337 71 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVK 149 (179)
Q Consensus 71 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~ 149 (179)
++.++++. ..|+..+... +.|+++|+||+|+..... ...+....+.+.++ ...++++||++|.|++
T Consensus 104 ~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 104 EGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHKKHPELTEIVPISALKGANLD 170 (308)
T ss_dssp TBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHHHCTTCCCEEECBTTTTBSHH
T ss_pred CCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHHhccCCCeEEEEeCCCCCCHH
Confidence 99988887 6678888774 799999999999973222 55667777888774 4489999999999999
Q ss_pred HHHHHHHHHHhC
Q 030337 150 AVFDAAIKVVLQ 161 (179)
Q Consensus 150 ~~f~~l~~~i~~ 161 (179)
++|+++.+.+..
T Consensus 171 ~L~~~l~~~l~~ 182 (308)
T 3iev_A 171 ELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHHHHSCB
T ss_pred HHHHHHHHhCcc
Confidence 999999998754
No 125
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=1.1e-17 Score=125.91 Aligned_cols=138 Identities=16% Similarity=0.114 Sum_probs=101.2
Q ss_pred eeehhhhhCCCCCcccCceeec-eeeEEEECCeEEEEEEEeCCCCccccccC------cccc--cCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY--RGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~--~~~~~~i~v~d~~~~~ 73 (179)
+|+.+++.+.+.....|.+... ....+..++ +.+.||||||+..+...+ ..++ .++|++++|+|+++.+
T Consensus 20 sL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~ 97 (258)
T 3a1s_A 20 SLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE 97 (258)
T ss_dssp HHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH
T ss_pred HHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh
Confidence 4667787777754444433221 223333344 789999999999887643 4555 5899999999999976
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
+.. .|...+... +.|+++|+||+|+..... +. ..+..+++.+++ +++++||++|.|++++|+
T Consensus 98 ~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 98 QSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-PVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-CEEECCTTTCTTHHHHHH
T ss_pred hHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-CEEEEEeeCCcCHHHHHH
Confidence 543 355555544 799999999999975432 33 236788888998 899999999999999999
Q ss_pred HHHHHHh
Q 030337 154 AAIKVVL 160 (179)
Q Consensus 154 ~l~~~i~ 160 (179)
++.+.+.
T Consensus 160 ~i~~~~~ 166 (258)
T 3a1s_A 160 KIVEYAQ 166 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999765
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=7e-18 Score=136.36 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=102.5
Q ss_pred eeehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCC----------CccccccCcc-cccCccEEEEEEeC
Q 030337 3 FIYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRPL-SYRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~-~~~~~~~~i~v~d~ 69 (179)
+|+.+++... +...+.+|..+.+...+..++. .++|||||| +|+|..++.. +++.+|++++|+|+
T Consensus 210 slin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~ 287 (456)
T 4dcu_A 210 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG 287 (456)
T ss_dssp HHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET
T ss_pred HHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 4667777554 2344555555666677778874 789999999 6777766554 78999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh----CCCeEEEeccCCC
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI----GSPAYIECSSKTQ 145 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~ 145 (179)
++..+.++. .|...+... +.|+++|+||+|+.+... ...+++.+.++.. +..+++++||++|
T Consensus 288 ~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 353 (456)
T 4dcu_A 288 EEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHFQFLDYAPILFMSALTK 353 (456)
T ss_dssp TTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred CCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHhcccCCCCCEEEEcCCCC
Confidence 987665543 566666553 699999999999976442 5556666655554 2348999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 030337 146 QNVKAVFDAAIKVVL 160 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~ 160 (179)
.|++++|+.+.+.+.
T Consensus 354 ~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 354 KRIHTLMPAIIKASE 368 (456)
T ss_dssp TTGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998764
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=7.6e-18 Score=127.60 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=98.5
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccc------cCccccc--CccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR--GADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~ 73 (179)
+|+.+++...+.....| |..+. +...++. .+.+++|||||++.+.. ++..|+. ++|++++|+|+++.+
T Consensus 18 TL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e 94 (272)
T 3b1v_A 18 SLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE 94 (272)
T ss_dssp HHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH
T ss_pred HHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH
Confidence 36677777654322223 22222 3344454 57899999999998763 4455665 699999999999876
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
++. .|...+.+. +.|+++|+||+|+..... +. ..+..+++.+++ +++++||++|.|++++|+
T Consensus 95 ~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 95 RNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEEECBTTTTBSHHHHHH
T ss_pred hHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CEEEEEccCCCCHHHHHH
Confidence 543 455555543 799999999999965432 33 346778888898 899999999999999999
Q ss_pred HHHHHHh
Q 030337 154 AAIKVVL 160 (179)
Q Consensus 154 ~l~~~i~ 160 (179)
++++.+.
T Consensus 157 ~i~~~~~ 163 (272)
T 3b1v_A 157 KAAHTTT 163 (272)
T ss_dssp HHHHSCT
T ss_pred HHHHHHh
Confidence 9988653
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.71 E-value=5.5e-17 Score=131.47 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=82.9
Q ss_pred eeehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC--------cccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++.+. +..++.+|..+.+...+.+++ +.+.||||+|++.+...+ ..+++++|++++|+|++++
T Consensus 248 SLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 325 (476)
T 3gee_A 248 TLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE 325 (476)
T ss_dssp HHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTC
T ss_pred HHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCC
Confidence 3556666654 344455555566667777888 679999999998766443 3478999999999999999
Q ss_pred hhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 73 ASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 73 ~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
.+++.+ ...|+..+. +.|+++|+||+|+..... .. ...+.+... .+++++||++|.|+++
T Consensus 326 ~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~----------~~---~~~l~~~~~-~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 326 RLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD----------AL---IRAIADGTG-TEVIGISALNGDGIDT 387 (476)
T ss_dssp SSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH----------HH---HHHHHHHHT-SCEEECBTTTTBSHHH
T ss_pred cchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc----------hh---HHHHHhcCC-CceEEEEECCCCCHHH
Confidence 888533 023444433 699999999999976432 21 233444322 4899999999999999
Q ss_pred HHHHHHHHHh
Q 030337 151 VFDAAIKVVL 160 (179)
Q Consensus 151 ~f~~l~~~i~ 160 (179)
+|+++.+.+.
T Consensus 388 L~~~i~~~~~ 397 (476)
T 3gee_A 388 LKQHMGDLVK 397 (476)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.2e-18 Score=127.42 Aligned_cols=125 Identities=9% Similarity=0.110 Sum_probs=90.7
Q ss_pred eeehhhhhCCCCC---cccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccC----ccEEEEEEeCC-Chhh
Q 030337 3 FIYIICNYSLGKQ---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----ADVFILAFSLI-SKAS 74 (179)
Q Consensus 3 ~l~~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~s 74 (179)
+|+.++..+.|.+ .+.||++..+ ..+.+.+|||||++.++..+..++++ ++++|+|||++ ++.+
T Consensus 27 sl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~ 98 (218)
T 1nrj_B 27 SLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 98 (218)
T ss_dssp HHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTC
T ss_pred HHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHH
Confidence 4678888888865 4777776544 34679999999999999988888887 89999999999 8899
Q ss_pred HHHHHHHHHHHHhhc-----CCCCcEEEEEeCCCcccccccccCCCCCcccc------HHHHHHHHHHhCCCeEEEeccC
Q 030337 75 YENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDKQFFIDHPGAVPIT------TAQGEELRKLIGSPAYIECSSK 143 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~Sa~ 143 (179)
+..+ ..|+..+... ..++|+++|+||+|+..... +. .+++..++...+. .++++||+
T Consensus 99 ~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~~~~~~~~~~-~~~~~Sa~ 166 (218)
T 1nrj_B 99 LTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEIQKVIERRKK-SLNEVERK 166 (218)
T ss_dssp CHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHHHHHHHHHHH-HHHC----
T ss_pred HHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHHHHHHHHHhc-cccccccc
Confidence 9888 5666555432 25799999999999976432 33 4556677777776 78999999
Q ss_pred CCCc
Q 030337 144 TQQN 147 (179)
Q Consensus 144 ~~~~ 147 (179)
+|.+
T Consensus 167 ~~~~ 170 (218)
T 1nrj_B 167 INEE 170 (218)
T ss_dssp ----
T ss_pred cccc
Confidence 8765
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=1e-17 Score=125.94 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=99.6
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccc----------cCcccc--cCccEEEEEEeC
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY--RGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~~~~i~v~d~ 69 (179)
+|+.++....+.....|++. +.....+.+++ ..+.||||||+..+.+ ++..++ +++|++|+|+|+
T Consensus 16 TL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDa 93 (256)
T 3iby_A 16 TLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDA 93 (256)
T ss_dssp HHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEG
T ss_pred HHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeC
Confidence 35667777766544455544 33345566677 4799999999988764 344566 899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
++++++..+ ...+... +.|+++|+||+|+..... +.. ....+++.+++ +++++||++|.|++
T Consensus 94 s~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 94 CHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------ISI-DTEKLESLLGC-SVIPIQAHKNIGIP 155 (256)
T ss_dssp GGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CEE-CHHHHHHHHCS-CEEECBGGGTBSHH
T ss_pred CCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cHH-HHHHHHHHcCC-CEEEEECCCCCCHH
Confidence 997766544 3333333 689999999999975432 211 24557788898 89999999999999
Q ss_pred HHHHHHHHH
Q 030337 150 AVFDAAIKV 158 (179)
Q Consensus 150 ~~f~~l~~~ 158 (179)
++|+++.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999886
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-17 Score=134.64 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=98.7
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCC----------ccccccCc-ccccCccEEEEEEeC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP-LSYRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~~~~~i~v~d~ 69 (179)
+|+.+++.+.+ ...+.+|..+.+...+..++. .++||||||+ |.|..++. .+++++|++++|+|+
T Consensus 190 SLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~ 267 (436)
T 2hjg_A 190 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG 267 (436)
T ss_dssp HHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET
T ss_pred HHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcC
Confidence 46788888776 344555555666677777874 4899999998 44444333 378899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHH-HHHHHHh---CCCeEEEeccCCC
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELRKLI---GSPAYIECSSKTQ 145 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~e~Sa~~~ 145 (179)
+++.++++. .|...+... +.|+++|+||+|+.+... ...++. ..+.+.+ +..+++++||++|
T Consensus 268 ~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg 333 (436)
T 2hjg_A 268 EEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHFQFLDYAPILFMSALTK 333 (436)
T ss_dssp TTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred CcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhcccCCCCCEEEEecccC
Confidence 999999886 577766654 799999999999976432 333222 2222222 2338999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 030337 146 QNVKAVFDAAIKVVL 160 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~ 160 (179)
.|++++|+.+.+.+.
T Consensus 334 ~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 334 KRIHTLMPAIIKASE 348 (436)
T ss_dssp TTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988765
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.70 E-value=2.9e-17 Score=120.28 Aligned_cols=149 Identities=11% Similarity=-0.038 Sum_probs=93.6
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEEC-CeEEEEEEEeCCCC----------ccccccCcccccC---ccEEEEEE
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQ----------EDYNRLRPLSYRG---ADVFILAF 67 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~~~~~~~---~~~~i~v~ 67 (179)
+|+.+++.+.+.....++.|.... ....+. .....+.||||||. +.+..++..+++. +|++++|+
T Consensus 44 slin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 123 (223)
T 4dhe_A 44 TAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMM 123 (223)
T ss_dssp HHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEE
Confidence 366777777643333333332211 223333 33467999999994 3445555566655 88899999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh------CCCeEEEec
Q 030337 68 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI------GSPAYIECS 141 (179)
Q Consensus 68 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~S 141 (179)
|++++.+... ..|+..+... +.|+++|+||+|+..... .....+...+..... ...+++++|
T Consensus 124 d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~S 191 (223)
T 4dhe_A 124 DARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQE--------SINALRATQKSLDAYRDAGYAGKLTVQLFS 191 (223)
T ss_dssp ETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHHHHHHHTCCSCEEEEEEB
T ss_pred eCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhh--------HHHHHHHHHHHHHhhhhcccCCCCeEEEee
Confidence 9998655443 3566666653 789999999999965331 000112222333332 334899999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCc
Q 030337 142 SKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 142 a~~~~~i~~~f~~l~~~i~~~~ 163 (179)
|++|.|++++|++|.+.+....
T Consensus 192 A~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 192 ALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TTTTBSHHHHHHHHHHHHC---
T ss_pred cCCCcCHHHHHHHHHHhcCccC
Confidence 9999999999999999876543
No 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.69 E-value=9.4e-17 Score=123.25 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=96.7
Q ss_pred eeehhhhhCCCCC-ccc-CceeeceeeEEEECCeEEEEEEEeCCCCcc--------ccccCcccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLGKQ-DYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f~~-~~~-pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++...+.. ... +|........+..++ .++.+|||||... +......+++++|++++|+|++++
T Consensus 22 TLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~ 99 (301)
T 1wf3_A 22 TLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP 99 (301)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC
T ss_pred HHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC
Confidence 4678888887742 222 333333333333344 7899999999876 344455678999999999999987
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHH-hCCCeEEEeccCCCCcHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~ 151 (179)
.+..+ ..+.+.+....++.|+++|+||+|+.... . . ....++. .+...++++||++|.|++++
T Consensus 100 ~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~-----------~--~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 100 PTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP-----------E--E-AMKAYHELLPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp CCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH-----------H--H-HHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred CChHH--HHHHHHHHhhcCCCCEEEEEECcccCCch-----------H--H-HHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence 66553 23446666655579999999999996422 1 0 2222233 34447899999999999999
Q ss_pred HHHHHHHHh
Q 030337 152 FDAAIKVVL 160 (179)
Q Consensus 152 f~~l~~~i~ 160 (179)
|+.+.+.+.
T Consensus 164 ~~~l~~~l~ 172 (301)
T 1wf3_A 164 KADLLALMP 172 (301)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhcc
Confidence 999988654
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=1.8e-16 Score=127.56 Aligned_cols=138 Identities=20% Similarity=0.152 Sum_probs=91.4
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccc---------cccCcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+ ..++..+..+.....+.+++. .+++|||||.+.. ...+..+++++|++++|+|+++
T Consensus 16 tL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~ 93 (439)
T 1mky_A 16 TLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR 93 (439)
T ss_dssp HHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred HHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 46778887764 344444444566677888884 5789999998753 3345567999999999999998
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHH-HHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 72 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
+.+..+. .+...+++. +.|+++|+||+|+... . ...+ .++. .++...++++||++|.|+.+
T Consensus 94 ~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 94 GITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGEPIPVSAEHNINLDT 155 (439)
T ss_dssp CCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHH
T ss_pred CCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHH
Confidence 7665432 222223332 6899999999998431 1 1222 3343 45665689999999999999
Q ss_pred HHHHHHHHHh
Q 030337 151 VFDAAIKVVL 160 (179)
Q Consensus 151 ~f~~l~~~i~ 160 (179)
+|+++.+.+.
T Consensus 156 L~~~i~~~l~ 165 (439)
T 1mky_A 156 MLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999999875
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=4.2e-17 Score=130.26 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=98.1
Q ss_pred eeehhhhhCCCC--CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcc-------cccCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------SYRGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~ 73 (179)
+|+.+++...+. ..+.+|.-+...+.+.+++.. .+.+|||+|++.+..+... +++++|++|+|+|++..+
T Consensus 49 TLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~ 127 (423)
T 3qq5_A 49 SFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP 127 (423)
T ss_dssp TTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH
T ss_pred HHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH
Confidence 356677776662 333333334445666666542 7899999999988766433 788999999999994333
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
.. ..|+..+.+. +.|+++|+||+|+..... . +.+.++++.+++ +++++||++|.|++++|+
T Consensus 128 ~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 128 YE----DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-KVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp HH----HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-CCCCCSSCCTTSTTTHHH
T ss_pred HH----HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-CEEEEECCCCCCHHHHHH
Confidence 32 4566666665 799999999999976542 2 556677777787 899999999999999999
Q ss_pred HHHHHHhCC
Q 030337 154 AAIKVVLQP 162 (179)
Q Consensus 154 ~l~~~i~~~ 162 (179)
++.+.+...
T Consensus 189 ~L~~~l~~~ 197 (423)
T 3qq5_A 189 TISEILPGD 197 (423)
T ss_dssp HHHHHSCCC
T ss_pred HHHHhhhhh
Confidence 999988543
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.67 E-value=8.6e-16 Score=117.97 Aligned_cols=131 Identities=15% Similarity=0.018 Sum_probs=97.2
Q ss_pred hhhCCCCCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHH
Q 030337 8 CNYSLGKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPEL 86 (179)
Q Consensus 8 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i 86 (179)
...|.|...+.|++||.+.....-++..+... .++++..+.+.+++++|++++|+|+++|. +++.+ ..|+..+
T Consensus 33 ~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I~~-----i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~ 106 (302)
T 2yv5_A 33 IPRGKVLKKTKIYAGDYVWGEVVDPNTFAIEE-----VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVY 106 (302)
T ss_dssp EECSSSTTSSCCCBTCEEEEEEEETTEEEEEE-----ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHH
T ss_pred EEcCCcccCCCCcCceEEEEEEccCCeEEEEe-----eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHH
Confidence 34556654444777776654433333333222 37788899999999999999999999996 88877 8898877
Q ss_pred hhcCCCCcEEEEEeCCCcccccccccCCCCCcccc-HHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 87 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT-TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 87 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.. .++|+++|+||+|+.++.. +. .++...+++..+. +++++||++|.|+++++..+..
T Consensus 107 ~~--~~~~~ilV~NK~DL~~~~~----------v~~~~~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 107 EY--FKVEPVIVFNKIDLLNEEE----------KKELERWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HH--TTCEEEEEECCGGGCCHHH----------HHHHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred Hh--CCCCEEEEEEcccCCCccc----------cHHHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence 65 3799999999999965321 22 3455666777787 8999999999999999987654
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=1.7e-16 Score=120.01 Aligned_cols=141 Identities=17% Similarity=0.047 Sum_probs=102.9
Q ss_pred eeehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccc------cCcccc--cCccEEEEEEeCCChh
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--RGADVFILAFSLISKA 73 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~ 73 (179)
+|+.++....+.....|+++... ...+.+++ ..+.+|||||+..+.. .+..++ .++|++++|+|+++.+
T Consensus 18 TL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~ 95 (271)
T 3k53_A 18 TIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM 95 (271)
T ss_dssp HHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH
T ss_pred HHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch
Confidence 36677777777655666665333 35566666 4599999999988776 455555 7899999999999864
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 74 SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 74 s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
... .|...+... ...|+++|+||+|+..... +.. ....+++.+++ +++++||++|.|+.++|+
T Consensus 96 ~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 96 RNL----FLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHH----HHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CEEECBGGGTBTHHHHHH
T ss_pred hhH----HHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cEEEEEeCCCCCHHHHHH
Confidence 322 333344433 1389999999999865432 222 26778888898 899999999999999999
Q ss_pred HHHHHHhCC
Q 030337 154 AAIKVVLQP 162 (179)
Q Consensus 154 ~l~~~i~~~ 162 (179)
.+.+.+...
T Consensus 159 ~i~~~~~~~ 167 (271)
T 3k53_A 159 MIALMAEGK 167 (271)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcc
Confidence 999987543
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=4.1e-16 Score=126.51 Aligned_cols=136 Identities=16% Similarity=0.155 Sum_probs=100.8
Q ss_pred eeehhhhhCC--CCCcccCceeeceeeEEEECCeEEEEEEEeCCCCc-ccccc--------CcccccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSL--GKQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++... +..++.+|..+.....+.+++ ..+.||||+|.. .+... ...+++++|++|+|+|+++
T Consensus 258 SLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 335 (482)
T 1xzp_A 258 TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS 335 (482)
T ss_dssp HHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS
T ss_pred HHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC
Confidence 4677777775 355666666666777888887 568999999998 65432 2356889999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHH
Q 030337 72 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 151 (179)
+.++++. .+++.+ .+.|+++|+||+|+... ++.++...++. .+. +++++||++|.|++++
T Consensus 336 ~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 336 PLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-HMVKISALKGEGLEKL 395 (482)
T ss_dssp CCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-TEEEEEGGGTCCHHHH
T ss_pred CCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-cEEEEECCCCCCHHHH
Confidence 9888765 333443 36899999999999642 23344444332 234 7999999999999999
Q ss_pred HHHHHHHHh
Q 030337 152 FDAAIKVVL 160 (179)
Q Consensus 152 f~~l~~~i~ 160 (179)
|++|.+.+.
T Consensus 396 ~~~l~~~~~ 404 (482)
T 1xzp_A 396 EESIYRETQ 404 (482)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHh
Confidence 999999765
No 139
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.66 E-value=2.9e-17 Score=124.55 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=98.5
Q ss_pred eeehhhhhCCCCCcccCcee-eceeeEEEECCeEEEEEEEeCCCCccccccC----------ccc--ccCccEEEEEEeC
Q 030337 3 FIYIICNYSLGKQDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PLS--YRGADVFILAFSL 69 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~~--~~~~~~~i~v~d~ 69 (179)
+|+.+++...+.....|++. +.....+..++ ..+.+|||||+..+.... ..+ .+++|++|+|+|+
T Consensus 18 TLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~ 95 (274)
T 3i8s_A 18 TLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDA 95 (274)
T ss_dssp HHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEG
T ss_pred HHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecC
Confidence 46677777776544555443 23334455555 457889999998877432 222 2799999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
++.++...+ ...+... +.|+++|+||+|+..... +. .....+++.+++ +++++||++|.|++
T Consensus 96 ~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 96 SNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLGC-PVIPLVSTRGRGIE 157 (274)
T ss_dssp GGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHTS-CEEECCCGGGHHHH
T ss_pred CChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcCC-CEEEEEcCCCCCHH
Confidence 987765444 3333333 699999999999965432 21 234677888898 89999999999999
Q ss_pred HHHHHHHHHHhCC
Q 030337 150 AVFDAAIKVVLQP 162 (179)
Q Consensus 150 ~~f~~l~~~i~~~ 162 (179)
++|+++.+.+...
T Consensus 158 el~~~i~~~~~~~ 170 (274)
T 3i8s_A 158 ALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999998876543
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=3.3e-15 Score=117.16 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=87.3
Q ss_pred EEEEEEeCCCCcccccc---------CcccccCccEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRL---------RPLSYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~---------~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
..+.+|||+|....... ...+...+|++++|+|++++. +++.. ..|+..+....++.|+++|+||+|+
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECccc
Confidence 67999999998653221 113445799999999999887 67776 6788888776557999999999999
Q ss_pred ccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 105 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.... ..+++..+++..+. +++++||++|.|++++|+++.+.+..
T Consensus 293 ~~~~------------~~~~~~~~~~~~~~-~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 293 ADEE------------NIKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CCHH------------HHHHHHHHHHHTTC-CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CChH------------HHHHHHHHHHhcCC-CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 6532 22445666667776 89999999999999999999998754
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.60 E-value=3.1e-15 Score=124.07 Aligned_cols=115 Identities=21% Similarity=0.339 Sum_probs=93.8
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
+++.+.++||||||+++|...+..+++.+|++|+|+|+++..+++.. ..|...... ++|+++|+||+|+....
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~--- 139 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD--- 139 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC---
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc---
Confidence 56679999999999999999888999999999999999998888777 667655432 68999999999996532
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
..+...++.+.++.. .++++||++|.|++++|+++++.+..+
T Consensus 140 ---------~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 140 ---------PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp ---------HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred ---------HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 223345566666652 489999999999999999999987654
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.60 E-value=2.9e-17 Score=134.52 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=99.8
Q ss_pred eeehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH
Q 030337 3 FIYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 81 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 81 (179)
+|+.++..+.|...+.|++...+. ..+..++ ...+.||||||++.|..++..+++.+|++|+|+|+++....+.. ..
T Consensus 19 SLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~ 96 (537)
T 3izy_P 19 TLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ES 96 (537)
T ss_dssp HHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HH
T ss_pred HHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HH
Confidence 467777777776666677653332 3333321 23689999999999999999999999999999999997776665 33
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH---HHHhC-CCeEEEeccCCCCcHHHHHHHHHH
Q 030337 82 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLIG-SPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 82 ~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
| ..+... ++|+++++||+|+..... ..+. .+...+ +..++ ..+++++||++|.|++++|+++..
T Consensus 97 l-~~~~~~--~vPiIVViNKiDl~~~~~--------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~ 164 (537)
T 3izy_P 97 I-QHAKDA--HVPIVLAINKCDKAEADP--------EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIA 164 (537)
T ss_dssp H-HHHHTT--TCCEEECCBSGGGTTTSC--------CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHH
T ss_pred H-HHHHHc--CCcEEEEEecccccccch--------HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHH
Confidence 3 333333 689999999999975321 0011 111111 11121 237899999999999999999998
Q ss_pred HHh
Q 030337 158 VVL 160 (179)
Q Consensus 158 ~i~ 160 (179)
.+-
T Consensus 165 l~~ 167 (537)
T 3izy_P 165 LAE 167 (537)
T ss_dssp HHT
T ss_pred hhh
Confidence 764
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.59 E-value=5.3e-15 Score=122.56 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=93.5
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
++..+.++||||||+++|...+..+++.+|++|+|+|+++..+++.. ..|..... .++|+++|+||+|+....
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~--- 141 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD--- 141 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC---
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC---
Confidence 46679999999999999998888899999999999999999888877 66765543 268999999999996532
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
......++.+.++.. .++++||++|.|++++|+++++.+..+
T Consensus 142 ---------~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 142 ---------VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp ---------HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ---------HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 223345566666652 489999999999999999999987654
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=1.3e-14 Score=115.78 Aligned_cols=114 Identities=22% Similarity=0.192 Sum_probs=78.1
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
...+.||||||+++|...+...+..+|++|+|+|+++ +.+++.+ .. +... ...|+++++||+|+.....
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~----~~~l-~~~~iivv~NK~Dl~~~~~- 152 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MA----LEIL-GIDKIIIVQNKIDLVDEKQ- 152 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HH----HHHT-TCCCEEEEEECTTSSCTTT-
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HH----HHHc-CCCeEEEEEEccCCCCHHH-
Confidence 3789999999999998877778889999999999995 4455544 22 2222 2358999999999975331
Q ss_pred ccCCCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 111 FIDHPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.....+++.++++.. ...+++++||++|.|+++++++|.+.+..+
T Consensus 153 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 153 -------AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp -------TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 112345556666542 123799999999999999999999877543
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.58 E-value=7e-15 Score=117.10 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=86.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 114 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~ 114 (179)
...+.||||||+++|...+..++..+|++++|+|+++..++... ..|+..+.... ..|+++|+||+|+.+...
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~----- 146 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEE----- 146 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHH-----
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHH-----
Confidence 37899999999999999888899999999999999998766655 45555555442 358999999999975331
Q ss_pred CCCccccHHHHHHHHHHhC--CCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 115 PGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.....++..++.+..+ ..+++++||++|.|++++++.|.+.+..+
T Consensus 147 ---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 147 ---ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 0011122222332221 23799999999999999999999877543
No 146
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.58 E-value=1.6e-15 Score=118.14 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=89.2
Q ss_pred EEEEEEeCCCCc----cccccCccccc---CccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCC
Q 030337 36 VNLGLWDTAGQE----DYNRLRPLSYR---GADVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKL 102 (179)
Q Consensus 36 ~~~~i~D~~G~~----~~~~~~~~~~~---~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~ 102 (179)
..+.||||||.. .+..+...+++ .++++|+|+|+++ +.+++++ ..|...+..+. .+.|+++|+||+
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECc
Confidence 468999999953 34445555655 4999999999999 7889888 78888888765 379999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
|+... .+....+++.++. ..++++||+++.|+++++++|.+.+....
T Consensus 285 Dl~~~--------------~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 285 DMPEA--------------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp TSTTH--------------HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred cCCCC--------------HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 99542 1345666676652 37899999999999999999999887544
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.58 E-value=3.1e-15 Score=120.82 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=90.2
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC--------cccccCccEEEEEEeCCCh
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISK 72 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~ 72 (179)
+|+.+++...+ ..++.+|..+.....+.+++ +.+.||||+|...+...+ ..+++++|++++|+|++++
T Consensus 239 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 316 (462)
T 3geh_A 239 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG 316 (462)
T ss_dssp HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTC
T ss_pred HHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC
Confidence 35666666543 44444444455567778888 567999999986654332 3468899999999999998
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.+... ..|+..+. ..|+++|+||+|+..... .. ....+. .+ .+++++||++|.|++++|
T Consensus 317 ~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~-~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 317 WTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE--NI-TQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp SCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT--TC-CCEEEEBTTTTBSHHHHH
T ss_pred CCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc--cC-CcEEEEECCCCCCHHHHH
Confidence 87766 35666654 479999999999976442 11 111111 23 379999999999999999
Q ss_pred HHHHHHHhCC
Q 030337 153 DAAIKVVLQP 162 (179)
Q Consensus 153 ~~l~~~i~~~ 162 (179)
+++.+.+...
T Consensus 376 ~~i~~~~~~~ 385 (462)
T 3geh_A 376 TAILEIVQTG 385 (462)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcc
Confidence 9999988654
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.54 E-value=3.6e-16 Score=125.73 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=85.3
Q ss_pred eehhhhhCCCCCcccCcee---eceeeEEEECCeEEEEEEEeCCCCc--------cccccCcccccCccEEEEEEeCCCh
Q 030337 4 IYIICNYSLGKQDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRGADVFILAFSLISK 72 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~---~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~~i~v~d~~~~ 72 (179)
|+.+++.+.+. ...++.| +.....+.+++ ..+.||||||++ .+...+..+++++|++|+|+|++++
T Consensus 19 L~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~ 95 (436)
T 2hjg_A 19 IFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG 95 (436)
T ss_dssp HHHHHEEEECC------------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHhCCCce-eecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 56677666553 1223333 22223333334 579999999986 5666677789999999999999998
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHH
Q 030337 73 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 73 ~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 152 (179)
.++.+. .+...+++ .+.|+++|+||+|+..... .+.++. .++...++++||++|.|+.+++
T Consensus 96 ~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 96 VTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp SCHHHH--HHHHHHTT--CCSCEEEEEECCCC-------------------CCCSSG-GGSSCCCEECBTTTTBTHHHHH
T ss_pred CCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeEEEeCcCCCChHHHH
Confidence 777653 34444544 3789999999999864321 011122 3455578999999999999999
Q ss_pred HHHHHHHhC
Q 030337 153 DAAIKVVLQ 161 (179)
Q Consensus 153 ~~l~~~i~~ 161 (179)
+++.+.+..
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999988753
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=7.5e-16 Score=121.04 Aligned_cols=143 Identities=10% Similarity=0.058 Sum_probs=75.4
Q ss_pred eehh-hhhCCCCCccc--------Cceeece-eeEEEECCeEEEEEEEeCCCC-------ccccccCc-------ccccC
Q 030337 4 IYII-CNYSLGKQDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDYNRLRP-------LSYRG 59 (179)
Q Consensus 4 l~~~-~~~~~f~~~~~--------pt~~~~~-~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~-------~~~~~ 59 (179)
|+.+ +..+.|...+. ||++..+ ...+..++..+.+++|||+|. +.+..++. .|+++
T Consensus 53 Lln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~ 132 (361)
T 2qag_A 53 LINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 132 (361)
T ss_dssp HHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 44556665554 5665333 244445677789999999999 77777765 55555
Q ss_pred ccEE-----------EEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccH--HHH
Q 030337 60 ADVF-----------ILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT--AQG 125 (179)
Q Consensus 60 ~~~~-----------i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~ 125 (179)
++++ +++|++++ ..++..+...|+..+. ..+|+++|+||+|+..... +.. +.+
T Consensus 133 ~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e----------v~~~k~~i 199 (361)
T 2qag_A 133 ESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE----------RERLKKRI 199 (361)
T ss_dssp HTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH----------HHHHHHHH
T ss_pred hhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH----------HHHHHHHH
Confidence 4433 46666665 4566655335555553 4799999999999975432 333 466
Q ss_pred HHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 126 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 126 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
..+++..++ +++++||+++.+ ++.|.++.+.+..
T Consensus 200 ~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 200 LDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 677777787 899999999999 8888888887754
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=1.5e-14 Score=117.54 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=85.7
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+++ ..+.||||||+++|...+..++..+|++|+|+|+++ +.+.+.+ ..+... ++|+++|+||+|+.
T Consensus 68 ~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~~--~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 68 FKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-----LILDHF--NIPIIVVITKSDNA 138 (482)
T ss_dssp EEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-----HHHHHT--TCCBCEEEECTTSS
T ss_pred EEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-----HHHHHc--CCCEEEEEECCCcc
Confidence 44455 689999999999998888889999999999999998 4555544 122222 68889999999997
Q ss_pred cccccccCCCCCccccHHHHHHHHHHh-C--CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 106 DDKQFFIDHPGAVPITTAQGEELRKLI-G--SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
+... .....++...+++.. + ..+++++||++|.|+++++++|.+.+-
T Consensus 139 ~~~~--------~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 139 GTEE--------IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CHHH--------HHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchh--------HHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 5321 012234455555544 2 237999999999999999999999764
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.53 E-value=3.7e-14 Score=113.15 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=81.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 110 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 110 (179)
...+.||||||+++|.......+..+|++|+|+|+++. .+.+.+ .. +... ...|+++|+||+|+.....
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~----~~~~-~~~~iivviNK~Dl~~~~~- 154 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MA----LQII-GQKNIIIAQNKIELVDKEK- 154 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HH----HHHH-TCCCEEEEEECGGGSCHHH-
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HH----HHHc-CCCcEEEEEECccCCCHHH-
Confidence 37899999999999887777778889999999999954 455544 22 2222 2358999999999975321
Q ss_pred ccCCCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 111 FIDHPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.....++...+++.. ...+++++||++|.|+++++++|.+.+..+
T Consensus 155 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 155 -------ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp -------HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 001223444454431 223799999999999999999999877543
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7e-15 Score=105.12 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=69.9
Q ss_pred eeehhhhhCCCCC---cccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccC----ccEEEEEEeCC-Chhh
Q 030337 3 FIYIICNYSLGKQ---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----ADVFILAFSLI-SKAS 74 (179)
Q Consensus 3 ~l~~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~s 74 (179)
+|+.++..+.|.. .+.|+++..+ ..+.+.+|||||++.+...+..++.+ ++++|+|||++ ++.+
T Consensus 63 sll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 134 (193)
T 2ged_A 63 SLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 134 (193)
T ss_dssp HHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHH
T ss_pred HHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchh
Confidence 4677888887755 3444444222 34679999999999998888888876 89999999999 8999
Q ss_pred HHHHHHHHHHHHhhc-----CCCCcEEEEEeCCCccccc
Q 030337 75 YENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~ 108 (179)
+..+ ..|+..+... .++.|+++|+||+|+....
T Consensus 135 ~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 135 LTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 9988 5666555432 2479999999999997643
No 153
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.51 E-value=5e-14 Score=105.65 Aligned_cols=146 Identities=15% Similarity=0.062 Sum_probs=91.5
Q ss_pred eeehhhhhCC-CCCcccCc-e-eeceeeEEEECCeEEEEEEEeCCCCccccccCc-----------ccccCccEEEEEEe
Q 030337 3 FIYIICNYSL-GKQDYVPT-V-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-----------LSYRGADVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~-f~~~~~pt-~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----------~~~~~~~~~i~v~d 68 (179)
+|+.+++... |...+.|+ + .......+.+++ ..+.||||||+..+..... .+++++|++|+|+|
T Consensus 37 tl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d 114 (260)
T 2xtp_A 37 AAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQ 114 (260)
T ss_dssp HHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 3567777776 66666665 2 233334555666 5799999999876543322 26789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe-CCCcccccccccCCCCCccccH-------HHHHHHHHHhCCCe--E-
Q 030337 69 LISKASYENVAKKWIPELRHYAPGVPIILVGT-KLDLRDDKQFFIDHPGAVPITT-------AQGEELRKLIGSPA--Y- 137 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n-K~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~- 137 (179)
+++..........|+..+.......|+++|.| |+|+.... +.. ..+..+++..+... +
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 183 (260)
T 2xtp_A 115 LGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNKALSKLVAACGGRICAFN 183 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred CCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchHHHHHHHHHhCCeEEEec
Confidence 99733322111233333211111345555555 99996421 222 33455666665411 2
Q ss_pred -EEeccCCCCcHHHHHHHHHHHHhC
Q 030337 138 -IECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 138 -~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
+++||++|.|++++|+++.+.+..
T Consensus 184 ~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 184 NRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHh
Confidence 789999999999999999998754
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.51 E-value=1.2e-13 Score=111.01 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=89.2
Q ss_pred eehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccC------------cccccCccEEEEEEeC
Q 030337 4 IYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------------PLSYRGADVFILAFSL 69 (179)
Q Consensus 4 l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------------~~~~~~~~~~i~v~d~ 69 (179)
|+.+++...+ ..++..|..+.....+.+++. .+.+|||+|..+..... ..+++.++++++|+|+
T Consensus 196 Lln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~ 273 (439)
T 1mky_A 196 LFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDA 273 (439)
T ss_dssp HHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEET
T ss_pred HHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 5666666654 334444444455567778885 57899999985443221 1356789999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH-HHHHH---hCCCeEEEeccCCC
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL---IGSPAYIECSSKTQ 145 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~e~Sa~~~ 145 (179)
++..+.++. .+...+... +.|+++|+||+|+..... ...++.. .+.+. .+..+++++||++|
T Consensus 274 ~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 339 (439)
T 1mky_A 274 TQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREKLYFIDYSPLIFTSADKG 339 (439)
T ss_dssp TTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred CCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHHhccCCCCcEEEEECCCC
Confidence 988777654 344444433 689999999999975332 3333222 22222 22347999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 030337 146 QNVKAVFDAAIKVVL 160 (179)
Q Consensus 146 ~~i~~~f~~l~~~i~ 160 (179)
.|++++|+.+.+.+.
T Consensus 340 ~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 340 WNIDRMIDAMNLAYA 354 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988653
No 155
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=5.2e-15 Score=106.69 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=69.3
Q ss_pred CCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH---HHHHhhcC--CCCcEEEEEeCC-CcccccccccCCCC
Q 030337 43 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYA--PGVPIILVGTKL-DLRDDKQFFIDHPG 116 (179)
Q Consensus 43 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~--~~~piilv~nK~-D~~~~~~~~~~~~~ 116 (179)
.+||+.++++|..||.++|++|||+|.+|.+.++ ...++ ...+.... .++|++|++||. |++..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence 4589999999999999999999999999986544 32333 33343332 579999999995 67542
Q ss_pred CccccHHHHHHHHHH---hCCCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 117 AVPITTAQGEELRKL---IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 117 ~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
.+..+..+.... ..-+.++.|||++|.|+.+.++||++.+..
T Consensus 179 ---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 179 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred ---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 343333322111 122357889999999999999999987754
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.50 E-value=8.5e-15 Score=119.11 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=72.8
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHH-----HHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
++...+.+.||||||+++|...+..+++.+|++|+|+|+++..++..+ .......+.. ....|+++|+||+|+.
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNV 184 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcc
Confidence 444557899999999999999888999999999999999997543221 0112222222 2235799999999997
Q ss_pred cccccccCCCCCccccH----HHHHHHHHHhCC----CeEEEeccCCCCcHHH
Q 030337 106 DDKQFFIDHPGAVPITT----AQGEELRKLIGS----PAYIECSSKTQQNVKA 150 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 150 (179)
+... ... ++...+.+..+. .+++++||++|.|+.+
T Consensus 185 ~~~~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 185 DWSQ----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TTCH----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cchH----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 5321 222 233344444443 3789999999999975
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.49 E-value=7.2e-16 Score=125.31 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=88.5
Q ss_pred eehhhhhCCCCCcccCceeece-eeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCCh---hhHHHHH
Q 030337 4 IYIICNYSLGKQDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK---ASYENVA 79 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~ 79 (179)
|+.++..+.+...+.+.+.... ...+..++ ..+.+|||||++.|..++...+..+|++|+|+|+++. .+.+.+
T Consensus 20 Ll~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l- 96 (501)
T 1zo1_I 20 LLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI- 96 (501)
T ss_dssp HHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-
T ss_pred HHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-
Confidence 4556666555544433332111 12222344 4689999999999999999999999999999999984 444433
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
..+.. .++|+++++||+|+...+... -..... +...+++.++ ..+++++||++|.|++++|+++...
T Consensus 97 ----~~~~~--~~vPiIVviNKiDl~~~~~~~----v~~~l~--~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 97 ----QHAKA--AQVPVVVAVNKIDKPEADPDR----VKNELS--QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ----HHHHH--TTCCEEEEEECSSSSTTCCCC----TTCCCC--CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ----HHHHh--cCceEEEEEEeccccccCHHH----HHHHHH--HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 22222 268999999999997532100 000000 0000111222 2389999999999999999998754
No 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=2.3e-13 Score=104.42 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=80.7
Q ss_pred EEEEEEeCCCCc---------cccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQE---------DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..+.+|||||.. .+......+++.+|++++|+|.++ -+-.. ..+...+.. .+.|+++++||+|+..
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCc
Confidence 679999999997 345566788999999999999987 32222 222333332 3689999999999965
Q ss_pred ccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 107 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
... ...+....+.+.++...++++||++|.|++++++.+...+.
T Consensus 131 ~~~----------~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 131 EKA----------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp CHH----------HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred cHH----------HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 211 23344555666667657999999999999999999998654
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.48 E-value=1.7e-13 Score=112.31 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
.+.++||||||+++|...+..+++.+|++|+|+|+++..+.+.. ..| ..+... ++|+++|+||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDT 148 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCC
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCcc
Confidence 37899999999999999999999999999999999998887776 444 344433 689999999999964
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.48 E-value=7.6e-13 Score=109.81 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=79.8
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.++||||||++.|..++..+++.+|++|+|+|+++ +.+++.+ . .+.. .++|+++++||+|+.........
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccC
Confidence 59999999999999999999999999999999999 6677655 2 2222 27899999999999753210000
Q ss_pred -------CCCCccccH---H---HHHHHHHHhC--------------CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 114 -------HPGAVPITT---A---QGEELRKLIG--------------SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 114 -------~~~~~~~~~---~---~~~~~~~~~~--------------~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
......+.. + +........+ ..+++.+||++|.|++++++++...+.
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 000000000 0 0111111222 126899999999999999999988663
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=3.9e-13 Score=105.57 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=92.7
Q ss_pred eehhhhhCCCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCc---------cccccCcccccCccEEEEEEeCCChh
Q 030337 4 IYIICNYSLGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLSYRGADVFILAFSLISKA 73 (179)
Q Consensus 4 l~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~ 73 (179)
|+.++....+. .++..+..+.....+.+++ ..+.+|||+|.- .|...+ ..+..+|++++|+|++++.
T Consensus 195 Lln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 195 LFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSE 271 (364)
T ss_dssp HHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCH
T ss_pred HHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCc
Confidence 55666665552 2222222234456677788 467999999962 233322 2578999999999999887
Q ss_pred --hHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHh-C-CCeEEEeccCCCCcH
Q 030337 74 --SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-G-SPAYIECSSKTQQNV 148 (179)
Q Consensus 74 --s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~e~Sa~~~~~i 148 (179)
..+.+ ..|...+.... .+.|+++|+||+|+..... ......+..++..+ . .+.++++||+++.|+
T Consensus 272 ~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 272 NLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341 (364)
T ss_dssp HHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSH
T ss_pred chHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCH
Confidence 55555 56666666544 5789999999999964210 01112333344555 2 126789999999999
Q ss_pred HHHHHHHHHHHhC
Q 030337 149 KAVFDAAIKVVLQ 161 (179)
Q Consensus 149 ~~~f~~l~~~i~~ 161 (179)
+++++++.+.+..
T Consensus 342 ~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 342 ELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.46 E-value=7.1e-14 Score=111.34 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=87.7
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~ 107 (179)
..++.....+.||||||+++|...+..+++.+|++|+|+|+++....+.. .|+..+... ++| +++++||+|+..+
T Consensus 68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCC
T ss_pred eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCc
Confidence 33444446789999999999988888889999999999999987655543 455555544 678 8999999999742
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCc------------------HHHHHHHHHHHHh
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQN------------------VKAVFDAAIKVVL 160 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~------------------i~~~f~~l~~~i~ 160 (179)
.. ......++...+++.++. .+++++||++|.| +.++++.+.+.+-
T Consensus 144 ~~-------~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 144 PE-------LLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HH-------HHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 11 000122356667777663 4799999999987 7777777776554
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.44 E-value=4.7e-13 Score=107.64 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCcccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 107 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~ 107 (179)
...+.||||||+++|...+..+++.+|++|+|+|+++... |+ .. ...+..+... ++| +++|+||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCccc
Confidence 3689999999999999988899999999999999998642 11 11 1112222222 566 9999999999531
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCcHHHHHH
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 153 (179)
.. .........++...+++..++ .+++++||++|.|+.++++
T Consensus 171 ~~----~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NW----SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ch----HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 10 000001122344555655554 3699999999999999655
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.44 E-value=1.4e-13 Score=109.32 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=86.9
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccccc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ 109 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~ 109 (179)
+......+.||||||+++|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++| +++++||+|+..+..
T Consensus 61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~ 136 (397)
T 1d2e_A 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSE 136 (397)
T ss_dssp EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHH
Confidence 333446799999999999988888889999999999999986555443 333 344333 678 789999999974211
Q ss_pred cccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCc----------HHHHHHHHHHHHhC
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQN----------VKAVFDAAIKVVLQ 161 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~----------i~~~f~~l~~~i~~ 161 (179)
......++..++++.+++ .+++++||++|.| +.++++.+.+.+-.
T Consensus 137 -------~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 137 -------MVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -------HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -------HHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 000123456677777764 3799999999764 88999988886653
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.43 E-value=3.7e-14 Score=113.98 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=80.5
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CC-CcEEEEEeCCCccc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PG-VPIILVGTKLDLRD 106 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~-~piilv~nK~D~~~ 106 (179)
...+.+.||||||+++|...+..+++.+|++|+|+|+++ .+|+.. ..|..+.++.. .+ .|+++++||+|+.+
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 334689999999999999888889999999999999999 777754 33322222211 13 46999999999975
Q ss_pred ccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHHHH
Q 030337 107 DKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f~ 153 (179)
... .........++...+++..+. .+++++||++|.|+.+++.
T Consensus 159 ~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 210 000001224556777777763 4799999999999986543
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.42 E-value=1.8e-13 Score=109.93 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=77.6
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
....+.||||||+++|...+..+++.+|++|+|+|+++....+.. .++..+... .-.|+++|+||+|+.....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~---- 174 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDE---- 174 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCH----
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccH----
Confidence 346799999999999988888889999999999999987544432 333344333 2236999999999975211
Q ss_pred CCCCccccHHHHHHHHHHhC--C--CeEEEeccCCCCcHHHH
Q 030337 114 HPGAVPITTAQGEELRKLIG--S--PAYIECSSKTQQNVKAV 151 (179)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~--~--~~~~e~Sa~~~~~i~~~ 151 (179)
.......++...+++.++ . .+++++||++|.|+.++
T Consensus 175 --~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 175 --RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp --HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred --HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 000012345566777777 1 37899999999999885
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.41 E-value=9.3e-14 Score=112.53 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCccccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENVAKKWIPELRHYA-PGVP-IILVGTKLDLRDDKQF 110 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~-~~~p-iilv~nK~D~~~~~~~ 110 (179)
..+.||||||+++|...+..+++.+|++|+|+|+++.. +|+.. ..|.+.+.... .++| +++++||+|+.....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~-~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~- 198 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG-GQTREHAVLARTQGINHLVVVINKMDEPSVQW- 198 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTT-CCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS-
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCC-CcHHHHHHHHHHcCCCEEEEEEECccCCCccc-
Confidence 67999999999999998888999999999999999863 33311 11211111111 2577 999999999954110
Q ss_pred ccCCCCCccccHHHHHHHHHHh-CC-----CeEEEeccCCCCcHHHHH
Q 030337 111 FIDHPGAVPITTAQGEELRKLI-GS-----PAYIECSSKTQQNVKAVF 152 (179)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~e~Sa~~~~~i~~~f 152 (179)
.........++...+++.. ++ .+++++||++|.|+.+++
T Consensus 199 ---~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 ---SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ---cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0000012233456666665 43 269999999999998765
No 168
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.41 E-value=5.5e-14 Score=106.40 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=74.4
Q ss_pred eehh-hhhCCCCCcc-------cCceeecee-eEEEECCeEEEEEEEeCCCCccc-------cccC-------cccc---
Q 030337 4 IYII-CNYSLGKQDY-------VPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY-------NRLR-------PLSY--- 57 (179)
Q Consensus 4 l~~~-~~~~~f~~~~-------~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~-------~~~~-------~~~~--- 57 (179)
|+.+ +..+.|..++ .||++..+. ..+..++..+.+.||||||.... ..+. ..|+
T Consensus 24 Lin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~ 103 (274)
T 3t5d_A 24 LINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAE 103 (274)
T ss_dssp HHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 4444 5566676666 677764443 44545667789999999997322 2211 1111
Q ss_pred ----------cCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHH
Q 030337 58 ----------RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 126 (179)
Q Consensus 58 ----------~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
..+|+++++++.+... .-.+ ..+++.+.. .+|+++|+||+|+..... .........
T Consensus 104 ~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~e--------~~~~~~~i~ 170 (274)
T 3t5d_A 104 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPEE--------CQQFKKQIM 170 (274)
T ss_dssp HSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHHH--------HHHHHHHHH
T ss_pred cccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHHH--------HHHHHHHHH
Confidence 2478999999877632 2222 345556655 699999999999864321 001112344
Q ss_pred HHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 127 ELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 127 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.....++ .++++||+++.|+.+++++|.+.+
T Consensus 171 ~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 171 KEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 45556677 789999999999999999998854
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.40 E-value=4.3e-13 Score=105.62 Aligned_cols=110 Identities=13% Similarity=-0.000 Sum_probs=79.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCccccccccc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDDKQFFI 112 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~n-K~D~~~~~~~~~ 112 (179)
...+.||||||+++|.......++.+|++|+|+| ++. .+... .++...+... ++|. ++++| |+|+ +...
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~--- 129 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA--- 129 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH---
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH---
Confidence 3579999999999998777778899999999999 543 33333 3444455444 5676 88999 9999 4321
Q ss_pred CCCCCcccc--HHHHHHHHHHhC--CCeEEE--eccCC---CCcHHHHHHHHHHHHh
Q 030337 113 DHPGAVPIT--TAQGEELRKLIG--SPAYIE--CSSKT---QQNVKAVFDAAIKVVL 160 (179)
Q Consensus 113 ~~~~~~~~~--~~~~~~~~~~~~--~~~~~e--~Sa~~---~~~i~~~f~~l~~~i~ 160 (179)
+. .++..++++..+ ..++++ +||++ +.|++++++.|.+.+-
T Consensus 130 -------~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 130 -------IDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp -------HHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 22 144555555443 248999 99999 9999999999988754
No 170
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.39 E-value=2.7e-14 Score=115.37 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=83.8
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCC--------CccccccCcccccCccEEEEEEeCCChhh
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSYRGADVFILAFSLISKAS 74 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 74 (179)
|+.+++.+.+. ...++.|.... ...........++|||||| ++.+...+..+++++|++|+|+|..+..+
T Consensus 39 L~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~ 117 (456)
T 4dcu_A 39 IFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT 117 (456)
T ss_dssp HHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC
T ss_pred HHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC
Confidence 45556555542 12223332221 2222333346799999999 66777778888999999999999887555
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHH
Q 030337 75 YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 154 (179)
Q Consensus 75 ~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 154 (179)
..+. .+...+++ .+.|+++|+||+|+.... ....++ ..++....+++||++|.|+.++++.
T Consensus 118 ~~d~--~l~~~l~~--~~~pvilV~NK~D~~~~~--------------~~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~ 178 (456)
T 4dcu_A 118 AADE--EVAKILYR--TKKPVVLAVNKLDNTEMR--------------ANIYDF-YSLGFGEPYPISGTHGLGLGDLLDA 178 (456)
T ss_dssp HHHH--HHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSEEECCTTTCTTHHHHHHH
T ss_pred hHHH--HHHHHHHH--cCCCEEEEEECccchhhh--------------hhHHHH-HHcCCCceEEeecccccchHHHHHH
Confidence 4432 34445544 379999999999985421 111111 1234446789999999999999999
Q ss_pred HHHHHh
Q 030337 155 AIKVVL 160 (179)
Q Consensus 155 l~~~i~ 160 (179)
+.+.+.
T Consensus 179 i~~~l~ 184 (456)
T 4dcu_A 179 VAEHFK 184 (456)
T ss_dssp HHTTGG
T ss_pred HHhhcc
Confidence 988764
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.39 E-value=4.9e-13 Score=116.76 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=88.9
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~ 107 (179)
+.++.....+.||||||+++|......+++.+|++|+|+|+++....+.. .++..+... ++| +++++||+|+.++
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCC
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccc
Confidence 34444557899999999999988888899999999999999987544433 344444443 678 8999999999752
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCC--------CcHHHHHHHHHHHHhC
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQ--------QNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~--------~~i~~~f~~l~~~i~~ 161 (179)
.. ......++...+++..+. .+++++||++| .|+.++++.+.+.+-.
T Consensus 428 ~e-------~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 428 EE-------LLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred hh-------hHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 21 000123456677777763 47999999999 4688999988876643
No 172
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=96.37 Aligned_cols=147 Identities=15% Similarity=0.034 Sum_probs=89.6
Q ss_pred eeehhhhhCCCCCcccCcee---eceeeEEEECCeEEEEEEEeCCCCc-----------cccccCcccccCccEEEEEEe
Q 030337 3 FIYIICNYSLGKQDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFS 68 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~---~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d 68 (179)
+|+.+++...+.....|+.+ ......+.+++ ..+.||||||.. .+...+..+++++|++|+|+|
T Consensus 44 tlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d 121 (239)
T 3lxx_A 44 ATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVP 121 (239)
T ss_dssp HHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEee
Confidence 46778888888666655322 22234455666 568999999943 344445556788999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCcccccccccCCCCCccc--cHHHHHHHHHHhCCCeEEEeccC
Q 030337 69 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPI--TTAQGEELRKLIGSPAYIECSSK 143 (179)
Q Consensus 69 ~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~Sa~ 143 (179)
+++..... ..|+..+.+.. ...|+++|+||+|+..... ....+ ..+....+++..+. .++.++..
T Consensus 122 ~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~i~~~~~~l~~l~~~~~~-~~~~~~~~ 191 (239)
T 3lxx_A 122 LGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTN------LHDYLREAPEDIQDLMDIFGD-RYCALNNK 191 (239)
T ss_dssp TTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHHHHHHHHSS-SEEECCTT
T ss_pred CCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCccc------HHHHHHhchHHHHHHHHHcCC-EEEEEECC
Confidence 98654422 23333333221 1469999999999965432 00001 12457778888887 67777766
Q ss_pred CC-----CcHHHHHHHHHHHHhC
Q 030337 144 TQ-----QNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 144 ~~-----~~i~~~f~~l~~~i~~ 161 (179)
.+ .++.++|..+.+.+.+
T Consensus 192 ~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 192 ATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHH
Confidence 44 6899999988776643
No 173
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=102.42 Aligned_cols=107 Identities=8% Similarity=-0.032 Sum_probs=73.9
Q ss_pred CCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH---HHHHhhc--CCCCcEEEEEeC-CCcccccccccCCCC
Q 030337 43 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTK-LDLRDDKQFFIDHPG 116 (179)
Q Consensus 43 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~--~~~~piilv~nK-~D~~~~~~~~~~~~~ 116 (179)
.+||+..+++|..||.++|++|||+|.+|.+.++ ...++ ...+.+. ..++|++|++|| .|++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 5789999999999999999999999999997544 22322 2333332 257999999997 588642
Q ss_pred CccccHHHHHHHHHH---hCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 117 AVPITTAQGEELRKL---IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 117 ~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
.+..+..+.... ..-+.++.|||++|.|+.+.++||++.+..+
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 333333222111 1223578899999999999999999987543
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.35 E-value=1.6e-12 Score=105.04 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hH----HHHHHHHHHHHhhcCCCCc-EEEEEeCCC
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY----ENVAKKWIPELRHYAPGVP-IILVGTKLD 103 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~i~~~~~~~p-iilv~nK~D 103 (179)
......+.||||||+++|...+..+++.+|++|+|+|+++.. +| +.. ..| ..+... ++| +++|+||+|
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~-~~~~~~--~v~~iivviNK~D 156 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHA-LLAFTL--GVRQLIVAVNKMD 156 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHH-HHHHHT--TCCEEEEEEECGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHH-HHHHHc--CCCeEEEEEEccc
Confidence 334478999999999999988888999999999999999763 33 332 222 233322 455 999999999
Q ss_pred cccccccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHH
Q 030337 104 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAV 151 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~ 151 (179)
+.+... .......++...+++.+++ .+++++||++|.|+.+.
T Consensus 157 l~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 973110 0001123455666777764 47999999999998743
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.34 E-value=2.7e-12 Score=108.04 Aligned_cols=71 Identities=21% Similarity=0.139 Sum_probs=57.0
Q ss_pred ECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 31 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 31 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+....+.++||||+|+++|...+..+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+.
T Consensus 69 ~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 69 LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp EEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred EeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 333348899999999999988888899999999999999887665543 444444443 69999999999986
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.32 E-value=3.4e-12 Score=92.28 Aligned_cols=143 Identities=10% Similarity=-0.060 Sum_probs=82.2
Q ss_pred eehhhhhCCCCCcccCceeecee-eEEEECCeEEEEEEEeCCCCcc----------ccccCcccc---cCccEEEEEEeC
Q 030337 4 IYIICNYSLGKQDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSY---RGADVFILAFSL 69 (179)
Q Consensus 4 l~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~---~~~~~~i~v~d~ 69 (179)
|+.++....|...+.|+.|.... ..+.+++ .+.+|||+|... +......++ +.++++++++|+
T Consensus 42 Ll~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 118 (210)
T 1pui_A 42 ALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI 118 (210)
T ss_dssp HHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred HHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC
Confidence 45566666666666778774432 3344444 478999999743 222222333 578999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCCCcH
Q 030337 70 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQQNV 148 (179)
Q Consensus 70 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 148 (179)
+++.++... .....+.. .+.|+++|+||+|+..... +......+..++...+. ..++++||+++.|+
T Consensus 119 ~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 119 RHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred CCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchh--------HHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 987665432 12222222 2689999999999864221 01123455555555542 36788999999999
Q ss_pred HHHHHHHHHHHhC
Q 030337 149 KAVFDAAIKVVLQ 161 (179)
Q Consensus 149 ~~~f~~l~~~i~~ 161 (179)
+++++++.+.+.+
T Consensus 187 ~~l~~~l~~~~~~ 199 (210)
T 1pui_A 187 DKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887644
No 177
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.5e-12 Score=106.28 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=73.4
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY---ENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
..+.+.||||||+++|...+..+++.+|++|+|+|+++.. +| ... ...+..+.. ..-.|++||+||+|+...
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~-lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASS-LGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHT-TTCCEEEEEEECTTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHH-cCCCeEEEEEecccccch
Confidence 3468999999999999999899999999999999999752 11 011 111112222 123459999999999752
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCcHHHH
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAV 151 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~ 151 (179)
.. ........+...++...+. .+++++||++|.|+.++
T Consensus 321 ~~------~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQ------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CH------HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hH------HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21 0000112334455555553 37999999999999876
No 178
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.27 E-value=1.3e-11 Score=91.95 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=84.9
Q ss_pred eeehhhhhCCCCCcccCceee---ceeeEEEECCeEEEEEEEeCCCC--------ccccccCccc----ccCccEEEEEE
Q 030337 3 FIYIICNYSLGKQDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQ--------EDYNRLRPLS----YRGADVFILAF 67 (179)
Q Consensus 3 ~l~~~~~~~~f~~~~~pt~~~---~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~----~~~~~~~i~v~ 67 (179)
+|+.+++...+.....++.+. ........++ ..+.||||||. +.+......+ .+++|++++|+
T Consensus 36 Slin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~ 113 (247)
T 3lxw_A 36 ATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVT 113 (247)
T ss_dssp HHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 356677776665443333222 1123344555 67899999996 3332222222 38999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCcccccccccCCCCCccc---cHHHHHHHHHHhCCCeEEEe
Q 030337 68 SLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPI---TTAQGEELRKLIGSPAYIEC 140 (179)
Q Consensus 68 d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~ 140 (179)
|+++....+ ..+++.+.+.. .+.|++|++||.|+..... ...+ ..+....+.+..+. .++..
T Consensus 114 d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~-------~~~l~~~~~~~l~~l~~~~g~-~~~~~ 182 (247)
T 3lxw_A 114 QLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL-------HDYVSNTENRALRELVAECGG-RVCAF 182 (247)
T ss_dssp ETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-------HHHHHHCCCHHHHHHHHHTTT-CEEEC
T ss_pred eCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH-------HHHHhhcccHHHHHHHHHcCC-eEEEE
Confidence 998633222 22333333321 2689999999999965321 0000 11345777777876 66666
Q ss_pred ccCC-----CCcHHHHHHHHHHHHhC
Q 030337 141 SSKT-----QQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 141 Sa~~-----~~~i~~~f~~l~~~i~~ 161 (179)
++.. +.|+.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 183 DNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCccccHHHHHHHHHHHHHHHHH
Confidence 5554 58999999999887753
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.25 E-value=9.4e-13 Score=100.37 Aligned_cols=110 Identities=22% Similarity=0.100 Sum_probs=74.8
Q ss_pred EEEEEEeCCCCc-------------cccccCcccccCccEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 36 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 36 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
..+.||||||.. .+..++..|+++++++| +|+|+++..+.++. ..|...+... +.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~~~~~~~~~--~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDPQ--GQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHHHHHCTT--CSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HHHHHHhCCC--CCeEEEEEEc
Confidence 579999999964 34455667888888777 79999887655544 3455555433 6899999999
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHH--hCCCeEEEeccCCCCcHHHHHHHHHHH
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEELRKL--IGSPAYIECSSKTQQNVKAVFDAAIKV 158 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 158 (179)
+|+.+... ...+........ .+...++++||++|.|++++|+++.+.
T Consensus 202 ~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 202 LDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99975331 122221110001 122357889999999999999998873
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.24 E-value=6e-13 Score=110.56 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=59.3
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCC
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----------SYENVAKKWIPELRHYAPGVP-IILVGTKLD 103 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D 103 (179)
...+.||||||+++|...+..+++.+|++|+|+|+++.. +.+.+ ..+... ++| +++|+||+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiD 326 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLD 326 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEeccc
Confidence 468999999999999999999999999999999999642 33222 122222 455 999999999
Q ss_pred cccccccccCCCCCccccHHHHHHHH-HHhCCC----eEEEeccCCCCcHH
Q 030337 104 LRDDKQFFIDHPGAVPITTAQGEELR-KLIGSP----AYIECSSKTQQNVK 149 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~e~Sa~~~~~i~ 149 (179)
+..... ........+...+. +..++. +++++||++|.|+.
T Consensus 327 l~~~~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 327 LMSWSE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGTTCH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 965211 00001122333344 334542 68999999999998
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.23 E-value=1.6e-11 Score=92.26 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=69.6
Q ss_pred eeehhhhhCCC--CCcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCccccc---------CccEEEEEEeCCC
Q 030337 3 FIYIICNYSLG--KQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---------GADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+ ...+.++........+..++ ..+.||||||++++......+++ +++++++|++++.
T Consensus 51 SLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~ 128 (262)
T 3def_A 51 STVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128 (262)
T ss_dssp HHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred HHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence 36677777774 44455544334445555666 58999999999988776655554 8899999999987
Q ss_pred hhhHHHHHHHHHHHHhhcCC---CCcEEEEEeCCCccc
Q 030337 72 KASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRD 106 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~ 106 (179)
.. +......|+..+..... ..|+++|+||+|+..
T Consensus 129 ~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 129 YA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp SC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 55 43332467777766542 249999999999964
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.20 E-value=9.3e-11 Score=96.23 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=55.3
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
..+.+.||||||+++|...+..+++.+|++|+|+|+++....+.. .+...+... ++|+++++||+|+...
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 347899999999999998888899999999999999987544332 333333332 7899999999999754
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.15 E-value=2e-10 Score=97.27 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred CeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 33 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 33 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+.. ..|. .+... ++|+++|+||+|+...
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEeCCCcccc
Confidence 3458999999999999998888999999999999999988776655 4443 33332 7999999999999753
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.12 E-value=3.3e-10 Score=95.75 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=58.1
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.. ..|.. +... ++|+++|+||+|+...
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 7899999999999998888999999999999999998888776 55543 3333 7999999999999753
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=8.3e-11 Score=92.50 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHH
Q 030337 45 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 124 (179)
Q Consensus 45 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 124 (179)
..++|..++..+++.++++++|+|++|+. ..|...+.+...+.|+++|+||+|+.+.. ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 46789999999999999999999999863 35666666666689999999999997532 22333
Q ss_pred H----HHHHHHhCCC--eEEEeccCCCCcHHHHHHHHHHHH
Q 030337 125 G----EELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 125 ~----~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
. ..+++..|.. .++++||++|.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3 3345666662 689999999999999999997653
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.11 E-value=8.1e-12 Score=95.77 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCeEEEEEEEeCCCC-------ccccccCc-------ccccC-------------ccEEEEEEeCCChhhHHHHHHHHHH
Q 030337 32 DGSTVNLGLWDTAGQ-------EDYNRLRP-------LSYRG-------------ADVFILAFSLISKASYENVAKKWIP 84 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~-------~~~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~ 84 (179)
++....+++|||+|. +.+..+.. .+++. +++++++.+.+. .+++.....+
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~-- 148 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF-- 148 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH--
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH--
Confidence 455678999999998 55555544 44333 233444444321 1344432233
Q ss_pred HHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCC
Q 030337 85 ELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 85 ~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~ 162 (179)
++......|+++|+||.|+..... .....+++.++++..++ .++++||+++ |++++|.++.+.+...
T Consensus 149 -l~~l~~~~~iilV~~K~Dl~~~~e--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 149 -MKAIHNKVNIVPVIAKADTLTLKE--------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp -HHHHTTTSCEEEEECCGGGSCHHH--------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred -HHHHHhcCCEEEEEEeCCCCCHHH--------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 333334689999999999965331 01234677888899998 8999999999 9999999999988654
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.08 E-value=5.9e-10 Score=83.95 Aligned_cols=102 Identities=13% Similarity=0.011 Sum_probs=64.6
Q ss_pred eeehhhhhCCCC--CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcc---------cccCccEEEEEEeCCC
Q 030337 3 FIYIICNYSLGK--QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------SYRGADVFILAFSLIS 71 (179)
Q Consensus 3 ~l~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------~~~~~~~~i~v~d~~~ 71 (179)
+|+.+++.+.+. ..+.++........+..++ +.+.||||||.+++...... ..+.+|++++|+|++.
T Consensus 54 SLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 54 STVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA 131 (270)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred HHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCC
Confidence 456777777653 2233332222222333344 78999999999877544331 2357999999999976
Q ss_pred hhhHHHHHHHHHHHHhhcCC-C--CcEEEEEeCCCcccc
Q 030337 72 KASYENVAKKWIPELRHYAP-G--VPIILVGTKLDLRDD 107 (179)
Q Consensus 72 ~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~D~~~~ 107 (179)
. ++......|+..+....+ + .|+++|+||+|+...
T Consensus 132 ~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 132 Y-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp C-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred C-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 4 344332467777765532 2 699999999999653
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.07 E-value=1.1e-09 Score=92.56 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=60.0
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+++ +.++||||||+.+|...+..+++.+|++|+|+|+++..+++.. ..|. .+... +.|+++|+||+|+...
T Consensus 70 ~~~~~--~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 70 AAWEG--HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEETT--EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred EEECC--eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence 44455 7899999999999988888899999999999999998888776 4454 34443 7899999999999753
No 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.07 E-value=1.8e-10 Score=97.42 Aligned_cols=118 Identities=10% Similarity=0.107 Sum_probs=80.0
Q ss_pred EEEEEeCCCCcc---ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccC
Q 030337 37 NLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 113 (179)
Q Consensus 37 ~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 113 (179)
.+.||||||... ....+..+++++|++|+|+|++++.+..+. ..|...+... +.|+++|+||+|+.....
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~---- 247 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYIKGR--GLTVFFLVNAWDQVRESL---- 247 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHTTTS--CCCEEEEEECGGGGGGGC----
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHHHhh--CCCEEEEEECcccccccc----
Confidence 589999999654 334556788999999999999999888876 5565555443 678999999999965321
Q ss_pred CCCCccc-cHH----HHHH-----HHHHhC-------CCeEEEeccC--------------CCCcHHHHHHHHHHHHhCC
Q 030337 114 HPGAVPI-TTA----QGEE-----LRKLIG-------SPAYIECSSK--------------TQQNVKAVFDAAIKVVLQP 162 (179)
Q Consensus 114 ~~~~~~~-~~~----~~~~-----~~~~~~-------~~~~~e~Sa~--------------~~~~i~~~f~~l~~~i~~~ 162 (179)
...... ..+ .... +....+ ...++++||+ ++.|+++++..+.+.+...
T Consensus 248 -~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 248 -IDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp -SSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred -cChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 000000 000 1111 111111 1258999999 9999999999998877543
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.9e-10 Score=90.66 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeCCCCccccc-------------------------cCcccccCccEEEEEEeCCCh-hhHHHHHHHHHHH
Q 030337 32 DGSTVNLGLWDTAGQEDYNR-------------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPE 85 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~-------------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~ 85 (179)
++....+++|||+|...+.. +...+++++++.+++|+.+.. .++......|+..
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~ 163 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 163 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH
Confidence 44456899999999865421 234567777776666666543 3555542357766
Q ss_pred HhhcCCCCcEEEEEeCCCcccccccccCCCCCccccH--HHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 86 LRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT--AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 86 i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
+.. .+|+|+|+||+|+..... +.. ..+...+...++ .++++|++++.++.++|..+...+
T Consensus 164 L~~---~v~iIlVinK~Dll~~~e----------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 164 LHE---KVNIIPLIAKADTLTPEE----------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HTT---TSEEEEEEESTTSSCHHH----------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred Hhc---cCcEEEEEEcccCccHHH----------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 653 699999999999965432 443 567778888888 899999999999999988887754
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=3e-09 Score=84.80 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=80.9
Q ss_pred EEEEEEeCCCCcc----ccccCccc---ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQED----YNRLRPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~----~~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~ 105 (179)
..+.+||++|... +..+...+ ...++.++.++|++ ..++.++ ..|..++.... .+.|.++|+||+|+.
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 4688999999743 22232223 35699999999998 5567666 56666665543 268999999999985
Q ss_pred cccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHhCCc
Q 030337 106 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 163 (179)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~~~~ 163 (179)
.. ...+.....++..+. .++.+||+++.|++++++++.+.+....
T Consensus 283 ~~------------~~~~~l~~~l~~~g~-~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 283 EE------------EAVKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CH------------HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred hH------------HHHHHHHHHHHhcCC-eEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 42 122333444455566 7999999999999999999999887544
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=2.8e-10 Score=89.58 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHH
Q 030337 44 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA 123 (179)
Q Consensus 44 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~ 123 (179)
..+++|++++..+++.++++++|+|++++.+ .|.+.+.+...+.|+++|+||+|+.+.. ...+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~ 118 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYP 118 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHH
Confidence 4588999998889999999999999999873 3444455555578999999999997532 2223
Q ss_pred HHH----HHHHHhCC--CeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 124 QGE----ELRKLIGS--PAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 124 ~~~----~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
... .+++..|. ..++.+||++|.|++++++.+.+..
T Consensus 119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 333 33555665 3689999999999999999987654
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.99 E-value=5.7e-11 Score=93.12 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=73.6
Q ss_pred EEEEEEeCCCCccc-------------cccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 030337 36 VNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 101 (179)
Q Consensus 36 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK 101 (179)
..+.+|||||..++ ..+...|+++++++|+|+|.++..... ..|+..++... .+.|+++|+||
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HHHHHHHHHhcccCCCEEEEEeC
Confidence 46899999998876 445667899999999999986544332 12333344333 36899999999
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHH
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
+|+..... ...+.+..+...++. +|+++|+.++.++++.+...
T Consensus 213 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 213 IDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred CccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 99975432 333334444445665 79999999998888765543
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.96 E-value=1.3e-12 Score=95.70 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
..|.++|+||+|+..... ...++...+++.++ ..+++++||++|.|++++|+++.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG----------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHT----------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhH----------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999999965331 45566666666553 238999999999999999999988764
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.95 E-value=2.2e-09 Score=80.10 Aligned_cols=114 Identities=13% Similarity=0.011 Sum_probs=68.7
Q ss_pred EEEEEEeCCCCccccccCc------ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D~~~~~ 108 (179)
+.+.||||+|+........ ..+.+ +++++++|.....+..+....+...... ...+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999976543322 14466 8888898876443332221111111111 11268999999999986432
Q ss_pred ccccCCCCCcccc--HH---HHH----H-----------------HHHHhCC-CeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 109 QFFIDHPGAVPIT--TA---QGE----E-----------------LRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 109 ~~~~~~~~~~~~~--~~---~~~----~-----------------~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
. +. .+ +.. . +++.++. .+++++||+++.|++++++++.+.+.
T Consensus 188 ~----------~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 E----------KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H----------HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c----------HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 10 00 000 1 1234443 27899999999999999999988653
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.92 E-value=3.8e-09 Score=76.81 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=70.4
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
..+.+|||+|+..... .+...++.+++|+|+++..... ..+.... +.|+++|+||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence 5688999999621111 1112578899999988764321 1122221 478999999999965321
Q ss_pred CCccccHHHHHHHHHHhC-CCeEEEeccCCCCcHHHHHHHHHHHHhC
Q 030337 116 GAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~~i~~ 161 (179)
...+.....++..+ ..+++++||++|.|++++|+++.+.+..
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 34455556555543 2389999999999999999999988754
No 197
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.90 E-value=9.3e-10 Score=84.38 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCcc-------------ccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 36 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 36 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
..+.+|||||... +...+..+++++|++++|+|.++.. +.... ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 5699999999754 3445566789999999999985432 11111 133334433 26899999999
Q ss_pred CCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC------CCcHHHHHHHHHHHHhC
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT------QQNVKAVFDAAIKVVLQ 161 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~------~~~i~~~f~~l~~~i~~ 161 (179)
+|+..... ...+.+......++. .++++|+.+ +.|+.++++.+...+-.
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99975331 111222110011113 566665554 68889999988877654
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.89 E-value=1.1e-09 Score=94.42 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 32 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 32 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.. ..|..... .++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 44578999999999999999999999999999999999999888876 55654332 2689999999999963
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.83 E-value=4.2e-09 Score=82.39 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=69.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+.+.||||+|.... ....+..+|++++|+|.+..+.++.+ . ......|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 67899999995331 12345889999999998776555433 1 1112469999999999964321
Q ss_pred CCccccHHHHHHHHHH---hC------CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 116 GAVPITTAQGEELRKL---IG------SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~---~~------~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
.. ....++... .+ ..+++.+||++|.|++++++++.+.+.
T Consensus 235 ----~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 235 ----AR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ----HH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 11 111222222 21 137999999999999999999988764
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.77 E-value=5.6e-08 Score=80.10 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=59.6
Q ss_pred EEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 29 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 29 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+++ +.++|.||||+.+|.......++-+|++|+|+|+.+...-+-. ..|. ...++ ++|++++.||+|+...
T Consensus 95 ~~~~~--~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~-~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 95 FPYRD--RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMD-VCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp EEETT--EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSCCC
T ss_pred EEECC--EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHH-HHHHh--CCceEEEEecccchhc
Confidence 44555 7899999999999999888899999999999999988766654 4553 44444 7999999999999653
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=1.4e-08 Score=80.62 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=24.9
Q ss_pred EEEEEEEeCCCCcc----ccccCc---ccccCccEEEEEEeCCCh
Q 030337 35 TVNLGLWDTAGQED----YNRLRP---LSYRGADVFILAFSLISK 72 (179)
Q Consensus 35 ~~~~~i~D~~G~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 72 (179)
.+.+++|||||... ...+.. .+++++|++++|+|+++.
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57899999999854 222333 457999999999999875
No 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=1.7e-08 Score=76.59 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=67.3
Q ss_pred EEeCCCCc-cccccCcccccCccEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCC
Q 030337 40 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN--VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPG 116 (179)
Q Consensus 40 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 116 (179)
|...||+. .........++++|+++.|+|+.+|.+..+ + ..|+ .+.|+++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-------~~kp~ilVlNK~DL~~~~-------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-------KNKPRIMLLNKADKADAA-------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-------SSSCEEEEEECGGGSCHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-------CCCCEEEEEECcccCCHH--------
Confidence 44578875 333344567899999999999999987652 3 3332 478999999999995421
Q ss_pred CccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 117 AVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
..+....+.+..+. +++.+||+++.|+.++++.+.+.+.
T Consensus 67 ----~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ----VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ----HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 11222334444566 7899999999999999998877654
No 203
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.68 E-value=4.9e-10 Score=87.63 Aligned_cols=109 Identities=25% Similarity=0.155 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCc-------------cccccCcccccCccEEEEE-EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 030337 36 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFILA-FSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 101 (179)
Q Consensus 36 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 101 (179)
..+.||||||.. .+..+...|+++++.+|++ .|.+....-.+. ..+...+.. .+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~i~~~~~~--~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKVAKEVDP--QGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HHHHHHHCT--TCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HHHHHHhCc--CCCceEEEecc
Confidence 579999999963 3344556677777655554 555442222222 234444433 37899999999
Q ss_pred CCcccccccccCCCCCccccHHHHHH--HHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 102 LDLRDDKQFFIDHPGAVPITTAQGEE--LRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 102 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
+|+.+... ...+.... +....+...++.+||+++.|++++++.+.+
T Consensus 207 ~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99975321 11111110 000123235678999999999999998876
No 204
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=6.7e-07 Score=69.96 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCcccc----ccCcc---cccCccEEEEEEeCCC
Q 030337 36 VNLGLWDTAGQEDYN----RLRPL---SYRGADVFILAFSLIS 71 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~----~~~~~---~~~~~~~~i~v~d~~~ 71 (179)
..+++|||||..++. .+... +++++|++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999998753 34333 4789999999999986
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.62 E-value=2.2e-08 Score=77.85 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=65.4
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+.+.||||+|...... .....+|++++|+|.++...++.+ .. .. .+.|+++|+||+|+.....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCChHH------
Confidence 5799999999654332 246899999999999765443222 10 11 1468899999999964211
Q ss_pred CCccccH--HHHHHHHHHhC------CCeEEEeccCCCCcHHHHHHHHHHHHh
Q 030337 116 GAVPITT--AQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 116 ~~~~~~~--~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~l~~~i~ 160 (179)
... .+........+ ...++.+||++|.|++++++++.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 12222222222 347899999999999999999988653
No 206
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=7.6e-08 Score=73.72 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=77.7
Q ss_pred hhCCCC-CcccCceeeceeeEEEECCeEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHH
Q 030337 9 NYSLGK-QDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPEL 86 (179)
Q Consensus 9 ~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i 86 (179)
..|.|. ....|.+||.+.....-++..+...+.+ +-..+.+..+.++|.+++|+|+.+|. +...+ +.++...
T Consensus 40 ~rg~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~~-----R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i-~r~L~~~ 113 (307)
T 1t9h_A 40 GRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKE-----RTNELIRPPICNVDQAVLVFSAVQPSFSTALL-DRFLVLV 113 (307)
T ss_dssp SCSSCCSCCCCCCBTCEEEEECCTTSCEEEEEECC-----CSCEETTTTEECCCEEEEEEESTTTTCCHHHH-HHHHHHH
T ss_pred EcccccccCCCCCCCeEEEEEEcCCCceEEEEEcc-----hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHH-HHHHHHH
Confidence 344453 2344667766553321112333333333 44445667899999999999999876 44433 6666554
Q ss_pred hhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHH
Q 030337 87 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 153 (179)
Q Consensus 87 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 153 (179)
... +.|++||.||+|+.++.. .....+......+..|. +.+.+||.++.|+++++.
T Consensus 114 ~~~--~~~~vivlnK~DL~~~~~--------~~~~~~~~~~~y~~~g~-~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 114 EAN--DIQPIICITKMDLIEDQD--------TEDTIQAYAEDYRNIGY-DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HTT--TCEEEEEEECGGGCCCHH--------HHHHHHHHHHHHHHHTC-CEEECCHHHHTTCTTTGG
T ss_pred HHC--CCCEEEEEECCccCchhh--------hHHHHHHHHHHHHhCCC-eEEEEecCCCCCHHHHHh
Confidence 433 789999999999965320 00001223334445676 789999999888876654
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.53 E-value=3.4e-07 Score=71.38 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+.+.++||+|.... .......+|.+++|+|++++...+.+ .. .+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 56889999995321 12346789999999999876544333 11 11 1468899999999954210
Q ss_pred CCccccHHHHHHHHHHh---------CCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLI---------GSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
. ......+...+ ..++++.+||++|.|+++++++|.+.+
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 01122222211 124789999999999999999998865
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.48 E-value=6.7e-08 Score=79.69 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEEEeCCCCcc-----------ccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 37 NLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 37 ~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
.+.||||||... |...+..++..+|++++|+|+++....... ..|+..+... ..|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCCEEEEEECCCcc
Confidence 589999999865 334455678899999999999886544444 4666666543 58999999999996
Q ss_pred c
Q 030337 106 D 106 (179)
Q Consensus 106 ~ 106 (179)
.
T Consensus 232 ~ 232 (550)
T 2qpt_A 232 E 232 (550)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.44 E-value=1.1e-06 Score=74.66 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=56.9
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..+.++|.||||+-+|.......++-+|++|+|+|+.+....+-. ..|....+ . ++|.+++.||+|+..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~-~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK-Y--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-H--TCCEEEEEECSSSTT
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH-c--CCCeEEEEccccccC
Confidence 358999999999999999888899999999999999987766554 34544433 3 699999999999864
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.41 E-value=1.3e-07 Score=79.30 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=56.2
Q ss_pred eEEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 34 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 34 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+.++|.||||+.+|.......++-+|++|+|+|+.+.-.-+-. ..|. ...+. ++|.+++.||+|....
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~-~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFH-ALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHH-HHHHH--TCSCEECCEECCSSSC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCeEEEEeccccccC
Confidence 347899999999999999888899999999999999987655543 3443 33343 6899999999998653
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.18 E-value=2.9e-05 Score=60.91 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHH
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV 151 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 151 (179)
..|+++++||.|..-.. .. .....+....+++..+. .++.+||+...++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~------~~-~n~~~~~v~~~a~~~g~-~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPD------GR-GNPQVEAVRRKALEEGA-EVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTT------CT-TCHHHHHHHHHHHHHTC-EEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcc------cc-hhhHHHHHHHHHHHcCC-eEEEeechhHHHHHHh
Confidence 47999999999853100 00 01445677788888887 8999999875554443
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.12 E-value=3.6e-07 Score=77.63 Aligned_cols=106 Identities=24% Similarity=0.140 Sum_probs=68.2
Q ss_pred EEEEEeCCCCccc-------------cccCcccc-cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 37 NLGLWDTAGQEDY-------------NRLRPLSY-RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 37 ~~~i~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
.+.++||||--.. ..+...|+ +.+|++++|+|+++..+-++. ..+...+... +.|+++|.||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ll~~L~~~--g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDPQ--GQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HHHHHHHCTT--CSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HHHHHHHHhc--CCCEEEEEeCc
Confidence 5789999995431 11223344 578999999999876444332 2344455443 68999999999
Q ss_pred CcccccccccCCCCCccccHHHHHHHHHH----hCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 103 DLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 103 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
|+..... .... ... .+. .+...++.+||++|.|++++++.+.+
T Consensus 228 Dlv~~~~----------~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGT----------DARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TSSCTTC----------CSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCcch----------hhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9975432 1111 111 001 13234567999999999999998886
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.06 E-value=2.4e-06 Score=63.97 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=60.5
Q ss_pred CCCCccc-cccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCcccc
Q 030337 43 TAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 121 (179)
Q Consensus 43 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 121 (179)
.||+... .......++++|+++.|+|+.+|.+.... . +. .. +.|.++|.||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence 4676532 22334578899999999999999876532 1 11 11 68999999999996421 1
Q ss_pred HHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHH
Q 030337 122 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 157 (179)
Q Consensus 122 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 157 (179)
.+....+.+..+. ++ .+||+++.|++++++.+..
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHH
Confidence 1222334445576 56 9999999999998877654
No 214
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.02 E-value=5.6e-05 Score=59.00 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=56.3
Q ss_pred cccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHH---HHH
Q 030337 56 SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKL 131 (179)
Q Consensus 56 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 131 (179)
...++|.+++|... +|. +...+ +.++...... +.|++||.||+|+.+.. ..+....+ ...
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i-~r~L~~a~~~--~~~~iivlNK~DL~~~~------------~~~~~~~~~~~y~~ 190 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNII-DRYLVGCETL--QVEPLIVLNKIDLLDDE------------GMDFVNEQMDIYRN 190 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHH-HHHHHHHHHH--TCEEEEEEECGGGCCHH------------HHHHHHHHHHHHHT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCch------------hHHHHHHHHHHHHh
Confidence 47899999988665 565 44444 6665544443 68889999999996522 11112333 345
Q ss_pred hCCCeEEEeccCCCCcHHHHHHHH
Q 030337 132 IGSPAYIECSSKTQQNVKAVFDAA 155 (179)
Q Consensus 132 ~~~~~~~e~Sa~~~~~i~~~f~~l 155 (179)
.|. +.+.+||.++.|++++...+
T Consensus 191 ~G~-~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 191 IGY-RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TTC-CEEECBTTTTBTHHHHHHHH
T ss_pred CCC-cEEEEecCCCcCHHHHHHhc
Confidence 677 78999999999999877643
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.98 E-value=2.3e-05 Score=60.72 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=62.8
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 115 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 115 (179)
+.+.|+||+|...-. ......+|.+++++|.......+.+ .... . ..|.+++.||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~i---~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKGI---F----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTTH---H----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHHH---h----ccccEEEEEchhccCchh------
Confidence 578999999974321 1235789999999998754432222 1111 1 245677779999743211
Q ss_pred CCccccHHHHHHHHHHh---C------CCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 116 GAVPITTAQGEELRKLI---G------SPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 116 ~~~~~~~~~~~~~~~~~---~------~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
.+......+.... . .++++.+||+++.|++++++.+.+..
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222333333321 1 24688999999999999999988754
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0058 Score=47.96 Aligned_cols=104 Identities=8% Similarity=0.002 Sum_probs=59.0
Q ss_pred eEEEECCeEEEEEEEeCCCCcccccc-------CcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 030337 27 ANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 99 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 99 (179)
-.+.+++ .++++.||||.-...+. ....++.||++++|+|.++|..-......-+..+.......|.+++.
T Consensus 112 g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 112 GVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILI 189 (376)
T ss_dssp EEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEE
T ss_pred EEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhh
Confidence 3455666 57899999996432221 11246789999999999998543322122222222222467888999
Q ss_pred eCCCcccccccccCCCCCccccHHHHHHHHHHhCC
Q 030337 100 TKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 100 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (179)
||.|...-... ........+.++...+...+.+
T Consensus 190 nK~d~~gi~i~--~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 190 KKKEKGGISIT--NTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp EECSSSCEEEE--ESSCCSSCCHHHHHHHHHHTTC
T ss_pred hHhhhhhhhhh--cchhhhhccHHHHHHHHHHhcc
Confidence 99997532210 0111122455566666665554
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.80 E-value=0.00023 Score=56.21 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCccccc-------cCcccccCccEEEEEEeCCChhh
Q 030337 36 VNLGLWDTAGQEDYNR-------LRPLSYRGADVFILAFSLISKAS 74 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~s 74 (179)
..+++|||||...+.+ .+..+++++|++++|+|+++..+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3699999999877554 33456889999999999986544
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.64 E-value=0.0083 Score=48.88 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCccccc-cCcc---c--ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~ 108 (179)
+.+.|+||+|...... ++.. . +-.++.+++|+|.+...... .....+.+ ..|+ .+|.||.|.....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~----~~a~~~~~---~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE----AQAKAFKD---KVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH----HHHHHHHH---HHCCCCEEEECTTSCCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH----HHHHHHHh---hcCceEEEEeCCccccch
Confidence 5788999999754221 1110 1 22789999999998754321 11222322 2575 8899999986422
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCC-----------------eEEEeccCCCCc-HHHHHHHHHHH
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSP-----------------AYIECSSKTQQN-VKAVFDAAIKV 158 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~e~Sa~~~~~-i~~~f~~l~~~ 158 (179)
. .+.......+.+ +...+|+..|.| +.++++++...
T Consensus 257 g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 G--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp T--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred H--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 122233344431 122379999998 99998888765
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.69 E-value=0.28 Score=34.18 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~ 105 (179)
+.+.|.|+++.. .......+..+|.++++...+... ..+ ..+++.++... ++.++.+|.|+.|..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 567899999875 223345567799999999876554 555 45666665442 367889999999853
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.56 E-value=0.61 Score=37.31 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCccccccCc------ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccc
Q 030337 36 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 109 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 109 (179)
+.+.|.||+|........- .....++.+++|.|.+....-.+. ...+.+. -.+..+|.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCccc--
Confidence 5678999999643221000 112357899999998864332222 2233322 2345688999998542
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 110 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
...+.......+. ++..++. |++++
T Consensus 255 ------------gG~~ls~~~~~g~-PI~fig~--Ge~vd 279 (443)
T 3dm5_A 255 ------------GGGALSAVAATGA-PIKFIGT--GEKID 279 (443)
T ss_dssp ------------HHHHHHHHHTTCC-CEEEEEC--SSSTT
T ss_pred ------------ccHHHHHHHHHCC-CEEEEEc--CCChH
Confidence 2345556666777 5666654 55443
No 221
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.07 E-value=1.5 Score=31.90 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
+.+.|.|+++.-. ......+..+|.+|++...+ ..+...+ ..+.+.++....+.++.+|.|+.+.
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESL-DLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHH-HHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHH-HHHHHHHHHHhccCCEEEEEecccC
Confidence 5678999988542 22334566799999999874 5566666 5666777666556788899999943
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=84.46 E-value=0.068 Score=41.67 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=39.3
Q ss_pred EEEEeCCCCcccccc----Ccc---cc---cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 38 LGLWDTAGQEDYNRL----RPL---SY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~----~~~---~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+.||||-.....+ ... .+ +..+.++++.+....--+..+ . .+..+.. .+.|++++.||.|..+.
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCccccc
Confidence 789999996432211 111 12 678899999987433222222 1 1111111 36899999999999764
Q ss_pred c
Q 030337 108 K 108 (179)
Q Consensus 108 ~ 108 (179)
.
T Consensus 290 ~ 290 (369)
T 3ec1_A 290 T 290 (369)
T ss_dssp E
T ss_pred c
Confidence 4
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.26 E-value=5.4 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=44.7
Q ss_pred EEEEEEeCCCC-ccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|.|+++. ... .....+..+|.+|++...+ +.+...+ ..+++.++... +.++.+|.|+.|..
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~-~~~~~~l~~~~-~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDAL-MLTIETLQKLG-NNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHH-HHHHHHHHHTC-SSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHH-HHHHHHHHhcc-CCCEEEEEEecCCc
Confidence 55779999886 332 2234567899999998865 5566665 55666666532 46788999999864
No 224
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=83.78 E-value=9.4 Score=26.97 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~ 105 (179)
.+.+.|.|+++... ......+..+|.+|++...+ ..+...+ ..+++.++... +...+-+|.|+.+..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRA-GQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHH-HHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHH-HHHHHHHHHhCCCccceEEEEecCCCC
Confidence 35678999988542 23334577899999998865 6677777 67777776654 245678999999864
No 225
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=82.52 E-value=0.95 Score=35.58 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCcccc-------ccCcccccCccEEEEEEeCCC
Q 030337 36 VNLGLWDTAGQEDYN-------RLRPLSYRGADVFILAFSLIS 71 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 71 (179)
..+.+||++|..... ..+...++.+|+++.|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 368999999954322 223345689999999999874
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.26 E-value=4.9 Score=30.14 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=53.8
Q ss_pred EEEEEEeCCCCcc--ccc-cCc-----ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccc
Q 030337 36 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 106 (179)
Q Consensus 36 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~ 106 (179)
+.+.|.||||... ... +.. .....++.+++|.|.+... +. ......+.+ ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~-~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KA-YDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GH-HHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HH-HHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 5688999999866 211 110 1234689999999987432 22 112223322 356 678899999743
Q ss_pred ccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHH
Q 030337 107 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVK 149 (179)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 149 (179)
....+..+....+. ++..++ .|++++
T Consensus 254 --------------~~g~~~~~~~~~~~-pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 --------------KGGGALSAVAATGA-TIKFIG--TGEKID 279 (297)
T ss_dssp --------------THHHHHHHHHTTTC-CEEEEE--CSSSTT
T ss_pred --------------chHHHHHHHHHHCc-CEEEEe--CCCChh
Confidence 22345567777787 666665 566664
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.06 E-value=11 Score=27.87 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEE-EEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPII-LVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pii-lv~nK~D~ 104 (179)
+.+.|.|+++.-... .....+..+|.+|+|...+ ..+...+ ..+++.++... .+.+++ +|.|+.+.
T Consensus 157 yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAM-NRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHH-HHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHH-HHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 567899998753321 1234567899999998754 5666666 56666666543 356665 89999984
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=79.51 E-value=13 Score=29.38 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCccccc-cC-----cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iilv~nK~D~~ 105 (179)
+.+.|.||+|...... +. -..+..++.+++|.|.+.... . ......+. ... | ..+|.||.|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCc
Confidence 5678999999754211 00 112336899999999875432 2 12222222 235 6 88999999984
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=77.63 E-value=0.37 Score=37.46 Aligned_cols=67 Identities=6% Similarity=0.005 Sum_probs=38.7
Q ss_pred EEEEeCCCCccccccC----cc------cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 38 LGLWDTAGQEDYNRLR----PL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~----~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.++||||-.....+. .. ..+..+.++++++.....-+..+ ..+..+.. ...|++++.||.|..+.
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence 7899999964322111 11 13567888888886432222222 11111211 36899999999999764
Q ss_pred c
Q 030337 108 K 108 (179)
Q Consensus 108 ~ 108 (179)
.
T Consensus 289 ~ 289 (368)
T 3h2y_A 289 T 289 (368)
T ss_dssp E
T ss_pred c
Confidence 3
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=76.18 E-value=11 Score=30.06 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCcc--ccc-cC---cc--cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccc
Q 030337 36 VNLGLWDTAGQED--YNR-LR---PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 107 (179)
Q Consensus 36 ~~~~i~D~~G~~~--~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 107 (179)
+.+.|.||+|... ... +. .. ..-+.+.+++|.|.+........ ...+.+. -.+..+|.||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccc-
Confidence 4567999999644 111 00 00 11246899999998864332222 2233322 245778999999853
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcH
Q 030337 108 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 148 (179)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 148 (179)
....+.......+. ++..++. |+++
T Consensus 253 -------------~~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 -------------KGGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp -------------CHHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred -------------cchHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 22345666667787 7777664 6554
No 231
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=76.02 E-value=9.6 Score=27.42 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHH---HHHHhhc-CCCCcEE-EEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHY-APGVPII-LVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~-~~~~pii-lv~nK~D~~ 105 (179)
.+.+.|.|+++.... .....+..+|.+|++...+. .+...+ ..+ +..+.+. .++.+++ +|.|+.|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGV-AGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHH-HHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHH-HHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 366889999986432 12234567999999998763 444444 333 3333332 2467775 899999863
No 232
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.01 E-value=4 Score=29.66 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=41.1
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~ 104 (179)
.+.+.|.|+|+...........+..+|.+|++...+ ..+...+ ...++.+++. +.+++ +|.|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIV-EKAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHH-HHHHHHHHTT--TCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHH-HHHHHHHHhC--CCCEEEEEECCCcc
Confidence 366889999986421111111122589999998766 3445555 4555566554 56777 89999885
No 233
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=75.72 E-value=8.2 Score=27.27 Aligned_cols=65 Identities=11% Similarity=-0.061 Sum_probs=44.0
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+.+.|.|+++.-.. .....+..+|.+|++...+ ..++..+ ..+.+.+.... -..+.+|.|+.+.
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~~~~~~-~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTG-LNIEKLAGDLG-IKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHH-HHHHHHHHHHT-CSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHH-HHHHHHHHHcC-CccEEEEEeCCCC
Confidence 466889999885432 3445678899999999864 5666666 45555444442 2457889999873
No 234
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=74.13 E-value=5.8 Score=28.42 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCcc
Q 030337 35 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------PGVPIILVGTKLDLR 105 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------~~~piilv~nK~D~~ 105 (179)
.+.+.|.|+++.-. ......+..+|.+|++.+.+ ..+...+ ..+++.+.... +..++-+|.|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHH-HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHH-HHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 46788999998533 23445667899999999854 6667666 56666665443 125678999998853
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=72.00 E-value=23 Score=27.86 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=59.8
Q ss_pred EEEEEeCCCCccccccCcc-----cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 37 NLGLWDTAGQEDYNRLRPL-----SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
.+.+||++|-..-...... -+.+.+..++ ++.... .-+.+ .+...+... +.|+++|.||.|+.--+.+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~-~kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF-KKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC-CHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHT
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc-cHHHH--HHHHHHHhc--CCCeEEEEecCcccccCccc
Confidence 4788999985321111111 1333455554 776521 11222 223333333 58999999999985211110
Q ss_pred -cCCCCCccccHHHHHHHH----HHhC--CCeEEEecc--CCCCcHHHHHHHHHHHHh
Q 030337 112 -IDHPGAVPITTAQGEELR----KLIG--SPAYIECSS--KTQQNVKAVFDAAIKVVL 160 (179)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~----~~~~--~~~~~e~Sa--~~~~~i~~~f~~l~~~i~ 160 (179)
...+..+..-.+...++. ...+ ....+-+|+ .++.|++++.+.+.+.+-
T Consensus 195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 000111111122233333 1222 235688899 667789999999988663
No 236
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.99 E-value=9 Score=30.43 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=24.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 62 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 62 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
+++++.|....-+..++ .++..+. ..+|+|+|.||+|...
T Consensus 151 ~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSC
T ss_pred EEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccc
Confidence 35556666544444443 4444444 4789999999999864
No 237
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=69.39 E-value=14 Score=27.16 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=28.7
Q ss_pred cCccEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 58 RGADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 58 ~~~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
..+++++++.|.. .+-+-.+. .++..+.+ ..++++|.+|+|...
T Consensus 110 aRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSC
T ss_pred heeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCC
Confidence 4478888888854 22233332 44445544 389999999999864
No 238
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=66.26 E-value=17 Score=28.30 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
..|.+++.||+|. .+.++...+ .....++.+|+..+.|++++...+.+.+
T Consensus 249 ~~p~i~v~nKid~---------------~~~eele~l---~~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDS---------------LSIEELELL---YRIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGG---------------SCHHHHHHH---TTSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEecccc---------------cCHHHHHHH---hcccchhhhhhhhcccchhHHHHHHHHc
Confidence 5799999999997 333333332 2334688999999999999998888765
No 239
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=63.52 E-value=13 Score=26.06 Aligned_cols=65 Identities=9% Similarity=-0.101 Sum_probs=43.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|.|+++... ......+..+|.+|++...+ ..+...+ ..+++.+++. +-.++-+|.|+.+..
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~-~~~~~~l~~~-~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDT-MKVGIVLKKA-GLAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHH-HHHHHHHHHT-TCEEEEEEEEEETSC
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHH-HHHHHHHHhC-CCceEEEEEecCCcc
Confidence 5678999987543 22334567899999998864 5566666 5566666654 223456889998863
No 240
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=56.24 E-value=12 Score=26.80 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=42.4
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|.|+++... ......+..+|.+|++...+ ..+...+ ..+++.+... +-.++-+|.|+.+..
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~-~~~~~~l~~~-~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDG-LKTKIVAERL-GTKVLGVVVNRITTL 175 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHH-HHHHHHHHHH-TCEEEEEEEEEECTT
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHH-HHHHHHHHhc-CCCeeEEEEccCCcc
Confidence 5678999997533 22234567789999988754 5566666 5566666554 223455889998863
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=54.69 E-value=13 Score=27.23 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=40.8
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~ 104 (179)
+.+.|.|+|+..... ........+|++|+|..... .+...+ ....+.++.. +.+++ +|.|+.|.
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~-~~~~~~l~~~--~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEV-KKGKELIEAT--GAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHH-HHHHHHHHTT--TCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHH-HHHHHHHHhC--CCCEEEEEEeCCcC
Confidence 557899999864321 11224467899999988653 344444 4455555543 56666 88999986
No 242
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=53.97 E-value=4.7 Score=33.50 Aligned_cols=68 Identities=21% Similarity=0.124 Sum_probs=36.0
Q ss_pred EEEEEeCCCCcc-------------ccccCcccccCccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 37 NLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 37 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
.+.+.|.||--. ...+...|+.+..++++++-..+.+ .-+.+ ..+...+... ..+.++|.||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~-l~la~~v~~~--g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEA-LSMAQEVDPE--GDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHH-HHHHHHHCSS--CCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHH-HHHHHHHhhc--CCceEEEecch
Confidence 478999996322 1223334455554444444433322 21122 3444444332 57899999999
Q ss_pred Ccccc
Q 030337 103 DLRDD 107 (179)
Q Consensus 103 D~~~~ 107 (179)
|+...
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 99754
No 243
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=50.13 E-value=41 Score=21.51 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.2
Q ss_pred eEEEECCeEEEEEEEeCCCCcc-------------ccccCcc--cccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q 030337 27 ANVVVDGSTVNLGLWDTAGQED-------------YNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 91 (179)
Q Consensus 27 ~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~ 91 (179)
.+..++|..+.+.|...|.|-+ |.-.... --.++.+..++|.-+|.+.|+....+.+.+.++...
T Consensus 34 vtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfag 113 (170)
T 4hhu_A 34 VTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAG 113 (170)
T ss_dssp EEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcc
Confidence 4455677777777777776421 1111111 124567889999999999999887788888877764
No 244
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=50.06 E-value=3.4 Score=33.05 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=38.3
Q ss_pred EEEEEeCCCCc--cccccC--------cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 030337 37 NLGLWDTAGQE--DYNRLR--------PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 99 (179)
Q Consensus 37 ~~~i~D~~G~~--~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 99 (179)
...+||..|.+ +.+..+ ..++...++.++|+|.++. +.+.. ..|...+++. ..+++.+-
T Consensus 88 ~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 88 SFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp CGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 34689999973 333333 4566678899999999988 44444 5777766654 33444444
No 245
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=46.39 E-value=32 Score=25.38 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 105 (179)
+.+.|.|+|..-... ........+|++|+|..... .+...+ ...++.+.... -..+=+|.|+.|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~-~~~~~~l~~~g-~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEV-ETSLSRFEQNG-IPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHH-HHHHHHHHHTT-CCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHH-HHHHHHHHhCC-CCEEEEEEcCcccc
Confidence 457899999864321 11234567999999998663 333444 34455555442 12344788999864
No 246
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=45.33 E-value=6.1 Score=29.09 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=41.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHH---H-------------H---HHHhhc--CCC-C
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK---W-------------I---PELRHY--APG-V 93 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~-------------~---~~i~~~--~~~-~ 93 (179)
+.+.|.|+++.. .......+..+|.+|++...+. .+...+ .. + + +.++.. .+. .
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDML-GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM 179 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTT-EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHH-HHHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence 567899999874 3334456788999999998653 233222 11 1 2 223222 345 6
Q ss_pred cEEEEEeCCCcc
Q 030337 94 PIILVGTKLDLR 105 (179)
Q Consensus 94 piilv~nK~D~~ 105 (179)
++.+|.|+.|..
T Consensus 180 ~~~vV~N~~~~~ 191 (286)
T 2xj4_A 180 DWVVLRNRLATT 191 (286)
T ss_dssp EEEEEEECCTTC
T ss_pred cEEEEEeeecCC
Confidence 788999999864
No 247
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=38.25 E-value=76 Score=20.26 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCC
Q 030337 62 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 134 (179)
Q Consensus 62 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (179)
+..++|.-+|.+.|+....+.+.+.++....+---+-||...+.-..- -...+..-..+++.+++++++
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgv----peqvrkelakeaerl~~efni 71 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGV----PEQVRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESC----CHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCC----cHHHHHHHHHHHHHHHHhcce
Confidence 567889999999999887788888877765333333333322211000 000011223456778888887
No 248
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=36.84 E-value=42 Score=25.14 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=37.0
Q ss_pred EEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 37 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 37 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+.|-|+.|.... + .+..+|++|+.=|+++..+..++ ..+++.+.+.. ..++++|.---|.
T Consensus 62 i~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~-~~~~~~L~~l~-~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 62 FVCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEV-KKFNDWLGNLP-YEYKIVIAGNHEL 122 (296)
T ss_dssp EEEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHH-HHHHHHHHTSC-CSEEEECCCTTCG
T ss_pred EEEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHH-HHHHHHHHhCC-CCeEEEEcCCccc
Confidence 4666798886532 1 34689999999999987655554 44455555432 2345444333343
No 249
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.62 E-value=45 Score=24.70 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~ 105 (179)
+.+.|.|+|+...... .......+|++|+|...... +...+ ...++.++.. +.+++ +|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~-~~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEV-SLSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHH-HHHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHH-HHHHHHHHhC--CCCeEEEEEeCCccC
Confidence 4578999998643211 11234678999999876533 33333 3444455443 34433 777999864
No 250
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=31.65 E-value=1.4e+02 Score=24.35 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEec--cCCCCcHHHHHH
Q 030337 76 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS--SKTQQNVKAVFD 153 (179)
Q Consensus 76 ~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~ 153 (179)
.++ ..-++.++++ .+|+|+..|+..-.. ....+..+++|+..|. ....+. ++-|.|-.++=+
T Consensus 347 ~NL-~kHIen~~~f--GvpvVVaiN~F~tDT------------~aEi~~v~~~~~~~G~-~~~~s~~wa~GG~G~~~LA~ 410 (543)
T 3do6_A 347 KNL-RVHVENLRKF--NLPVVVALNRFSTDT------------EKEIAYVVKECEKLGV-RVAVSEVFKKGSEGGVELAK 410 (543)
T ss_dssp HHH-HHHHHHHHHT--TCCEEEEEECCTTCC------------HHHHHHHHHHHHTTTC-EEEEECHHHHGGGGSHHHHH
T ss_pred HHH-HHHHHHHHHc--CCCeEEEEeCCCCCC------------HHHHHHHHHHHHHcCC-CEEEechhhccchhHHHHHH
Confidence 344 3445666665 799999999986532 2455677889999998 554432 233567777766
Q ss_pred HHHHHH
Q 030337 154 AAIKVV 159 (179)
Q Consensus 154 ~l~~~i 159 (179)
.+++.+
T Consensus 411 ~Vv~~~ 416 (543)
T 3do6_A 411 AVAEAA 416 (543)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 666654
No 251
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=31.41 E-value=55 Score=25.50 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC--CCeEEEeccCC---------------------CCcH
Q 030337 92 GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKT---------------------QQNV 148 (179)
Q Consensus 92 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~---------------------~~~i 148 (179)
..|++.+.|+.|..-... ...-.....++++..+ . .++.+||+. +.|+
T Consensus 224 ~kp~~y~~Nv~e~~~~~~--------~~~~~~~~~~~~~~~~p~~-~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl 294 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQ--------KNKYLPKIKKWIDENSPGD-TLIPMSVAFEERLTNFTEEEAIEECKKLNTKSML 294 (392)
T ss_dssp GSCEEEEEECCHHHHTTT--------CCSSHHHHHHHHHTTSTTC-CEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSH
T ss_pred cCceEEEEEecchhhccc--------chHHHHHHHHHHHhcCCCC-eEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccH
Confidence 589999999998531100 0023455667776655 4 688888875 5677
Q ss_pred HHHHHHHHHHH
Q 030337 149 KAVFDAAIKVV 159 (179)
Q Consensus 149 ~~~f~~l~~~i 159 (179)
+.+.....+.+
T Consensus 295 ~~~i~~~~~~L 305 (392)
T 1ni3_A 295 PKIIVTGYNAL 305 (392)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 77777765443
No 252
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.29 E-value=64 Score=25.48 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=36.3
Q ss_pred EEEEEEeCCCCccccc-cCc-----ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~ 105 (179)
+.+.|.||||...... ... ..+..++.+++|.|.......- .....+.. ..++ -+|.||.|..
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~----~~~~~f~~---~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA----NTAKAFNE---ALPLTGVVLTKVDGD 253 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH----HHHHHHHH---HSCCCCEEEECTTSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH----HHHHHHhc---cCCCeEEEEecCCCC
Confidence 5688999999654321 111 1234688999999987543221 11222222 2443 3688999974
No 253
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=30.24 E-value=1.5e+02 Score=21.26 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=39.4
Q ss_pred EEEEEEEeCCCCccccccC-cccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcE-EEEEeCCCc
Q 030337 35 TVNLGLWDTAGQEDYNRLR-PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDL 104 (179)
Q Consensus 35 ~~~~~i~D~~G~~~~~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pi-ilv~nK~D~ 104 (179)
.+.+.|.|++|......+. ......+|.+|++...+ ..+...+ ..+++.+.... .+.++ -+|.|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHH-HHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 3668899998853211111 11125689999888754 5566655 44555554321 24554 478898763
No 254
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=29.23 E-value=55 Score=22.33 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=35.2
Q ss_pred EEEEeCCCCcc-ccccCccccc--CccEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEE-EeC
Q 030337 38 LGLWDTAGQED-YNRLRPLSYR--GADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILV-GTK 101 (179)
Q Consensus 38 ~~i~D~~G~~~-~~~~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv-~nK 101 (179)
+.+-|+.+... +..+. ..++ ++|.+|+.=|+.+.. ..+.+ ..+++.+.+. ..|+++| ||.
T Consensus 9 ~~iSD~H~~~~~~~~~~-~~~~~~~~D~vi~~GDl~~~~~~~~~~-~~~~~~l~~~--~~pv~~v~GNH 73 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFV-KLAPDTGADAIALIGNLMPKAAKSRDY-AAFFRILSEA--HLPTAYVPGPQ 73 (228)
T ss_dssp EEEECCTTCHHHHHHHH-THHHHHTCSEEEEESCSSCTTCCHHHH-HHHHHHHGGG--CSCEEEECCTT
T ss_pred EEEeeccCCHHHHHHHH-HHHhhcCCCEEEECCCCCCCCCCHHHH-HHHHHHHHhc--CCcEEEECCCC
Confidence 45668777532 11111 1223 799999999998765 44444 4555666553 4676644 554
No 255
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=28.88 E-value=1e+02 Score=22.29 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCcEE-EEEeCCCcc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH----YAPGVPII-LVGTKLDLR 105 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~pii-lv~nK~D~~ 105 (179)
+.+.|.|+|+..... ....+..+|.+|++...+ ..+...+ ..+++.+.. ..++.+++ +|.|+.|..
T Consensus 155 yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 155 YDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNI-QNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp CSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHH-HHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCEEEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHH-HHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 567899999864321 122344699999998865 3344444 333333332 23467755 889999864
No 256
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.09 E-value=2.2e+02 Score=22.39 Aligned_cols=84 Identities=23% Similarity=0.182 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCccccc-cCc-----ccccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCccccc
Q 030337 36 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDK 108 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~ 108 (179)
+.+.|.||+|...... ... ...-.++.+++|.|.... ++. ......+... .+ .-+|.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~a-v~~a~~f~~~---l~i~GVIlTKlD~~~~- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEA-LSVARAFDEK---VGVTGLVLTKLDGDAR- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THH-HHHHHHHHHH---TCCCEEEEESGGGCSS-
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHH-HHHHHHHHhc---CCceEEEEeCcCCccc-
Confidence 4577899999754321 110 012257888999998643 222 1222222222 33 4467899987431
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 030337 109 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 141 (179)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 141 (179)
...+.......+. ++..+.
T Consensus 253 -------------~g~alsi~~~~g~-PI~flg 271 (425)
T 2ffh_A 253 -------------GGAALSARHVTGK-PIYFAG 271 (425)
T ss_dssp -------------CHHHHHHHHHHCC-CEEEEE
T ss_pred -------------HHHHHHHHHHHCC-CEEEEe
Confidence 1244556667777 555544
No 257
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=25.00 E-value=1.1e+02 Score=23.44 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=36.3
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCc---EEEEEeCCCc
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY---ENVAKKWIPELRHYAPGVP---IILVGTKLDL 104 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~i~~~~~~~p---iilv~nK~D~ 104 (179)
+.+.|.|+|..-. ......+..+|.+|++...+... +. +.+ ...++.+++...+.+ ++.+.|+.+-
T Consensus 248 yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 248 YDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRL-PEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp CSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTH-HHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred CCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHH-HHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 5678999987543 22334566899999999865332 11 222 233444444432333 4567788773
No 258
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=24.47 E-value=1.3e+02 Score=18.54 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=25.5
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
...|++|+-+++.+...++- +..++...+.+|+|++....|
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~-----~~~l~~~~~~~~ii~lt~~~~ 106 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAA-----IEKLSRLHPGLTCLLVTTDAS 106 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHH-----HHHHHHHCTTCEEEEEESCCC
T ss_pred CCCCEEEEeCCCCCccHHHH-----HHHHHHhCCCCcEEEEeCCCC
Confidence 45677777666665555443 345555556789888866544
No 259
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=23.87 E-value=1.2e+02 Score=18.13 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=19.4
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 030337 65 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 102 (179)
Q Consensus 65 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 102 (179)
+||++++++.+........ .+.+..++..+.++.+-.
T Consensus 3 vv~~v~d~~~~~~al~~~~-n~~~~~~~~~v~vv~~g~ 39 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVI-NLYNDIKDAEIEVVLHQS 39 (108)
T ss_dssp EEEEECCGGGHHHHHHHHH-HHHHHSTTCEEEEEECGG
T ss_pred EEEEeCChHHHHHHHHHHH-HHHhhCCCCeEEEEEcCh
Confidence 4566667877765533333 333323456666665543
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=23.83 E-value=1.3e+02 Score=22.71 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=49.4
Q ss_pred EEEEeCCCCccccccCccc------ccCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccc
Q 030337 38 LGLWDTAGQEDYNRLRPLS------YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 111 (179)
Q Consensus 38 ~~i~D~~G~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 111 (179)
+.+.||+|........... .-..|-.+++.|.+... ++ ......+.+.. + .-.++.||.|....
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~-~~~~~~~~~~~-~-it~iilTKlD~~a~---- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AI-VEQARQFNEAV-K-IDGIILTKLDADAR---- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HH-HHHHHHHHHHS-C-CCEEEEECGGGCSC----
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HH-HHHHHHHHHhc-C-CCEEEEeCcCCccc----
Confidence 4568999975432211010 11367888999966543 22 22233333221 1 23677799997432
Q ss_pred cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHH
Q 030337 112 IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 150 (179)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 150 (179)
.-.+.......+. ++..++ +|+++++
T Consensus 284 ----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 ----------GGAALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp ----------CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred ----------hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 2345667777787 666666 6666643
No 261
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.50 E-value=1.1e+02 Score=19.20 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=23.8
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
..+++|+-+++.+...++- +..++...+.+|++++....|
T Consensus 47 ~~dliild~~l~~~~g~~~-----~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 47 FAGIVISDIRMPGMDGLAL-----FRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp CCSEEEEESCCSSSCHHHH-----HHHHHHHCTTSCEEEEECGGG
T ss_pred CCCEEEEeCCCCCCCHHHH-----HHHHHhhCCCCCEEEEECCCC
Confidence 4576666666555444433 344444456799998865443
No 262
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=23.32 E-value=89 Score=21.91 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=22.7
Q ss_pred EEEEeCCCCcc-ccccCccc-ccCccEEEEEEeCCChhh
Q 030337 38 LGLWDTAGQED-YNRLRPLS-YRGADVFILAFSLISKAS 74 (179)
Q Consensus 38 ~~i~D~~G~~~-~~~~~~~~-~~~~~~~i~v~d~~~~~s 74 (179)
+.+-|+.+... +....... -.++|.+|++=|+.+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 55678877532 22111111 147999999999998654
No 263
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.20 E-value=1e+02 Score=18.60 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=23.8
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
..|.+++-++..+...++- +..+++..++.|++++....|.
T Consensus 46 ~~dlii~d~~l~~~~g~~~-----~~~l~~~~~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQV-----LETLRKRQYSGIIIIVSAKNDH 86 (134)
T ss_dssp CCSEEEEETTCSSSCHHHH-----HHHHHHTTCCSEEEEEECC---
T ss_pred CCCEEEEecCCCCCChHHH-----HHHHHhcCCCCeEEEEeCCCCh
Confidence 4676666666555444443 3455555568898888766553
No 264
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.30 E-value=1.2e+02 Score=21.25 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=32.6
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeC
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTK 101 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK 101 (179)
.++|++.+.++.....+...+ ..+++.+++... ++|+++.|.=
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~-~~~i~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQ-KDLMDRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHH-HHHHHHHHHTTCGGGSEEEEESSS
T ss_pred cCCCEEEEEchhcccCcHHHH-HHHHHHHHHcCCCCCCEEEEECCC
Confidence 468888887788888887777 788888887753 6888776643
No 265
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=21.63 E-value=1.7e+02 Score=19.52 Aligned_cols=60 Identities=8% Similarity=-0.071 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCccccccCcccccCccEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCC
Q 030337 36 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH----YAPGVPIILVGTKL 102 (179)
Q Consensus 36 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~piilv~nK~ 102 (179)
+.+.+.|..... ...+..+|++|+..-.-.-.-...+ ..|++.+.. ...+.|+.++++--
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~l-k~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKM-KRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHH-HHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHH-HHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 566777765432 2345679999999877654433334 566666654 23578888888854
No 266
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=21.52 E-value=1.8e+02 Score=20.20 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCccc
Q 030337 62 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 106 (179)
Q Consensus 62 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 106 (179)
++++-+-.-...+|+.+...+..++.+-.++..|++++..-=++.
T Consensus 57 AivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpk 101 (190)
T 3u5c_H 57 ALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPK 101 (190)
T ss_dssp EEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCC
T ss_pred EEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCC
Confidence 555555556678999987778889998888889999988765543
No 267
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.29 E-value=89 Score=20.01 Aligned_cols=40 Identities=15% Similarity=0.001 Sum_probs=25.7
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
.+..+|+.=|.+.+.....+ ..+.. .+ ++|++.+.+|.+|
T Consensus 40 ka~LViiA~D~~p~~~~~~i-~~lc~---~~--~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYVKLV-KALCA---KN--EIKYVSVPKRASL 79 (126)
T ss_dssp CCSEEEEESSCCSTTHHHHH-HHHHH---HT--TCCEEEESCSHHH
T ss_pred CceEEEEeCCCChHHHHHHH-HHHHH---Hh--CCCEEEECCHHHH
Confidence 56777777777655555444 33222 22 7999999887776
No 268
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=21.21 E-value=95 Score=19.13 Aligned_cols=40 Identities=8% Similarity=0.257 Sum_probs=22.9
Q ss_pred CccEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
..|++|+-+++.+ ...++-+ ..+++. +++|+|++....|.
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~-----~~l~~~-~~~~ii~ls~~~~~ 90 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQTA-----LAIQQI-SELPVVFLTAHTEP 90 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHHH-----HHHHHH-CCCCEEEEESSSSC
T ss_pred CCCEEEEeccCCCCCCHHHHH-----HHHHhC-CCCCEEEEECCCCH
Confidence 4566666555533 3444433 233333 57899988877664
No 269
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.95 E-value=97 Score=18.88 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=22.3
Q ss_pred CccEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 59 GADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 59 ~~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
..|++|+-++.. +...++-+ ..++.. +.+|++++....+
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~-----~~l~~~-~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETA-----ARLAAG-CNLPIIFITSSQD 93 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHH-----HHHHHH-SCCCEEEEECCCC
T ss_pred CCCEEEEecCCCCCCCHHHHH-----HHHHhC-CCCCEEEEecCCC
Confidence 457666666554 34444433 333333 5799998876544
No 270
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.38 E-value=1.6e+02 Score=17.99 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=25.0
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
..|++++-+++.+...++-+ ..+++..+++|++++....|
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~-----~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDIL-----REIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHH-----HHHHHHCTTCEEEEEECTTC
T ss_pred CCCEEEEeCCCCCCcHHHHH-----HHHHHhCCCCeEEEEECCCC
Confidence 56777776666655555433 34455556789988866554
No 271
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.36 E-value=1.4e+02 Score=18.16 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=26.5
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 58 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 58 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
...|++|+-++..+...++ ++..+++..+++|++++....+
T Consensus 58 ~~~dlvi~D~~l~~~~g~~-----~~~~l~~~~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLGKP-----GIVEARALWATVPLIAVSDELT 98 (135)
T ss_dssp CCCSEEEEEEETTGGGGST-----THHHHHGGGTTCCEEEEESCCC
T ss_pred cCCCEEEEeCCCCCchHHH-----HHHHHHhhCCCCcEEEEeCCCC
Confidence 3478888877776655544 3345555556899998865443
No 272
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.32 E-value=1.2e+02 Score=18.97 Aligned_cols=40 Identities=8% Similarity=0.142 Sum_probs=23.3
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 030337 59 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 103 (179)
Q Consensus 59 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 103 (179)
..|++|+-++..+...++- +..++...+.+|++++....+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~-----~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEVF-----LEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp CCSEEEEESSCSSSCHHHH-----HHHHHHHCTTSEEEEEECGGG
T ss_pred CCCEEEEecCCCCCCHHHH-----HHHHHHhCCCCcEEEEecCCC
Confidence 3566666665555444433 344555556789988865443
No 273
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=20.16 E-value=88 Score=25.60 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCcHHHHHHHHHHHH
Q 030337 80 KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 159 (179)
Q Consensus 80 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~i 159 (179)
..-++.++++ .+|+|+..|+..-.. ....+..+++|+..|. ....+=++-|.|-.++=+.+++.+
T Consensus 364 ~kHien~~~f--GvpvVVaiN~F~tDT------------~aEi~~v~~~~~~~G~-~~~~~wa~GG~G~~~LA~~Vv~~~ 428 (557)
T 3pzx_A 364 EKHIENIGKF--GVPAVVAINAFPTDT------------EAELNLLYELCAKAGA-EVALSWAKGGEGGLELARKVLQTL 428 (557)
T ss_dssp HHHHHHHHTT--TCCEEEEEECCTTCC------------HHHHHHHHHHCCSSEE-EEECHHHHGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCeEEEEeCCCCCC------------HHHHHHHHHHHHHcCC-CEEEEecccchhHHHHHHHHHHHH
Confidence 3445566665 799999999986532 2344556677777776 443332333567777666666655
Q ss_pred h
Q 030337 160 L 160 (179)
Q Consensus 160 ~ 160 (179)
-
T Consensus 429 ~ 429 (557)
T 3pzx_A 429 E 429 (557)
T ss_dssp H
T ss_pred h
Confidence 3
No 274
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.13 E-value=1.5e+02 Score=17.67 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=24.3
Q ss_pred CccEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCc
Q 030337 59 GADVFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDL 104 (179)
Q Consensus 59 ~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 104 (179)
..|++|+-++..+ ...++- +..++...+++|++++....+.
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~-----~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQV-----ARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHH-----HHHHHHHCTTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCHHHH-----HHHHHhcCCCCCEEEEeCCccH
Confidence 4677666555554 444433 3344444567999988766653
No 275
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=20.08 E-value=95 Score=19.23 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=39.1
Q ss_pred cccCccEEEEEEeCCChhh-HH-HHHHHHHHHHhhcCCCCcEEEEEeCCCcccccccccCCCCCccccHHHHHHHHHHhC
Q 030337 56 SYRGADVFILAFSLISKAS-YE-NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 133 (179)
Q Consensus 56 ~~~~~~~~i~v~d~~~~~s-~~-~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (179)
.+..+|++|++.-.....- -. .+ ..|++.+.....+.|+.++++--... ..........+..+|
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~-~~fl~~l~~~l~~k~~~~~~t~g~~~-------------~~~~~~l~~~l~~~g 108 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVV-EPFFTDLAPKLKGKKVGLFGSYGWGS-------------GEWMDAWKQRTEDTG 108 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHH-HHHHHHHGGGCSSCEEEEEEEESSCC-------------SHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEccccCCCCCCHHHH-HHHHHHhhhhcCCCEEEEEEecCCCC-------------chHHHHHHHHHHHCC
Confidence 3578899999876643221 11 13 44555554444578899888743210 123455666777777
Q ss_pred CCeEE
Q 030337 134 SPAYI 138 (179)
Q Consensus 134 ~~~~~ 138 (179)
. ..+
T Consensus 109 ~-~~~ 112 (137)
T 2fz5_A 109 A-TVI 112 (137)
T ss_dssp C-EEE
T ss_pred C-EEc
Confidence 7 443
Done!