Query 030339
Match_columns 179
No_of_seqs 130 out of 1085
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02600 enoyl-CoA hydratase 100.0 3.1E-46 6.7E-51 291.4 17.9 179 1-179 23-202 (251)
2 PRK06143 enoyl-CoA hydratase; 100.0 3.7E-46 8E-51 291.7 18.1 178 1-179 35-213 (256)
3 PRK09076 enoyl-CoA hydratase; 100.0 4E-46 8.7E-51 291.9 18.3 179 1-179 30-209 (258)
4 PRK05869 enoyl-CoA hydratase; 100.0 4.7E-46 1E-50 285.4 18.0 178 1-179 35-213 (222)
5 PRK05980 enoyl-CoA hydratase; 100.0 7.5E-46 1.6E-50 290.7 17.7 179 1-179 31-214 (260)
6 TIGR03210 badI 2-ketocyclohexa 100.0 6.3E-46 1.4E-50 290.4 17.3 179 1-179 30-208 (256)
7 PRK07657 enoyl-CoA hydratase; 100.0 9.3E-46 2E-50 290.1 17.8 179 1-179 32-211 (260)
8 PRK07327 enoyl-CoA hydratase; 100.0 1.1E-45 2.5E-50 290.7 17.6 178 1-179 40-220 (268)
9 PRK06144 enoyl-CoA hydratase; 100.0 1.7E-45 3.6E-50 288.9 17.5 179 1-179 36-217 (262)
10 PRK06023 enoyl-CoA hydratase; 100.0 1.4E-45 3E-50 287.8 16.6 178 1-179 34-211 (251)
11 PRK08150 enoyl-CoA hydratase; 100.0 2.5E-45 5.3E-50 286.9 17.8 176 1-179 30-206 (255)
12 PRK09120 p-hydroxycinnamoyl Co 100.0 2.1E-45 4.5E-50 290.1 17.5 178 1-179 36-218 (275)
13 PRK05809 3-hydroxybutyryl-CoA 100.0 3.3E-45 7.2E-50 287.0 18.2 179 1-179 32-211 (260)
14 TIGR01929 menB naphthoate synt 100.0 2.8E-45 6.2E-50 287.2 17.3 179 1-179 31-211 (259)
15 PRK06190 enoyl-CoA hydratase; 100.0 3.3E-45 7.2E-50 286.4 17.5 177 1-179 32-208 (258)
16 PRK06127 enoyl-CoA hydratase; 100.0 3.8E-45 8.2E-50 287.9 17.7 179 1-179 39-220 (269)
17 PRK05862 enoyl-CoA hydratase; 100.0 4.8E-45 1E-49 285.7 17.6 177 1-179 32-208 (257)
18 PRK07658 enoyl-CoA hydratase; 100.0 4.7E-45 1E-49 285.8 17.4 178 1-179 29-208 (257)
19 PRK09245 enoyl-CoA hydratase; 100.0 4.3E-45 9.4E-50 287.2 17.2 178 1-179 32-217 (266)
20 PRK03580 carnitinyl-CoA dehydr 100.0 5E-45 1.1E-49 286.1 17.3 178 1-179 30-208 (261)
21 PRK06142 enoyl-CoA hydratase; 100.0 4.2E-45 9.2E-50 288.1 16.9 178 1-179 34-224 (272)
22 PRK07511 enoyl-CoA hydratase; 100.0 7.1E-45 1.5E-49 285.2 17.9 178 1-179 31-212 (260)
23 PRK06563 enoyl-CoA hydratase; 100.0 4.3E-45 9.3E-50 285.7 16.5 178 1-179 27-206 (255)
24 KOG1680 Enoyl-CoA hydratase [L 100.0 9.2E-46 2E-50 282.5 12.3 176 1-179 65-241 (290)
25 PRK09674 enoyl-CoA hydratase-i 100.0 6.3E-45 1.4E-49 284.7 17.2 177 1-179 30-206 (255)
26 PRK08138 enoyl-CoA hydratase; 100.0 8.6E-45 1.9E-49 284.8 17.6 177 1-179 36-212 (261)
27 PRK08139 enoyl-CoA hydratase; 100.0 1E-44 2.2E-49 285.0 17.9 177 1-179 39-217 (266)
28 TIGR02280 PaaB1 phenylacetate 100.0 1.1E-44 2.4E-49 283.5 17.6 177 1-179 27-207 (256)
29 PRK07260 enoyl-CoA hydratase; 100.0 9.3E-45 2E-49 283.7 17.1 178 1-179 30-212 (255)
30 PLN02664 enoyl-CoA hydratase/d 100.0 1.1E-44 2.4E-49 286.1 17.4 178 1-179 36-226 (275)
31 PRK05995 enoyl-CoA hydratase; 100.0 1.2E-44 2.7E-49 284.1 17.5 177 1-179 32-212 (262)
32 PRK05674 gamma-carboxygeranoyl 100.0 9.3E-45 2E-49 285.1 16.2 177 1-179 34-214 (265)
33 PRK05870 enoyl-CoA hydratase; 100.0 1.3E-44 2.8E-49 282.0 16.6 176 1-179 31-207 (249)
34 PRK11423 methylmalonyl-CoA dec 100.0 1.3E-44 2.8E-49 283.7 16.7 178 1-179 32-210 (261)
35 PRK08140 enoyl-CoA hydratase; 100.0 2.1E-44 4.5E-49 282.8 17.8 177 1-179 32-213 (262)
36 PRK05864 enoyl-CoA hydratase; 100.0 1.7E-44 3.7E-49 285.1 17.4 178 1-179 38-224 (276)
37 PRK08258 enoyl-CoA hydratase; 100.0 2.3E-44 4.9E-49 284.6 18.0 178 1-179 45-228 (277)
38 PF00378 ECH: Enoyl-CoA hydrat 100.0 7.1E-45 1.5E-49 282.9 14.8 178 1-179 26-204 (245)
39 PRK06688 enoyl-CoA hydratase; 100.0 2.3E-44 5E-49 282.1 17.0 177 1-179 33-210 (259)
40 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-44 5.6E-49 283.6 17.3 178 1-179 41-221 (273)
41 PRK07110 polyketide biosynthes 100.0 2.4E-44 5.3E-49 280.4 16.8 176 1-179 33-208 (249)
42 PRK06494 enoyl-CoA hydratase; 100.0 3E-44 6.5E-49 281.4 17.3 176 1-179 32-208 (259)
43 PRK07468 enoyl-CoA hydratase; 100.0 3.7E-44 8.1E-49 281.3 17.5 177 1-179 33-213 (262)
44 PRK08260 enoyl-CoA hydratase; 100.0 3.9E-44 8.4E-49 285.6 17.3 178 1-179 32-228 (296)
45 PLN02888 enoyl-CoA hydratase 100.0 3.8E-44 8.1E-49 281.6 16.7 175 1-179 38-213 (265)
46 PRK07659 enoyl-CoA hydratase; 100.0 4.7E-44 1E-48 280.5 17.1 176 1-179 34-211 (260)
47 PRK07799 enoyl-CoA hydratase; 100.0 5.6E-44 1.2E-48 280.5 17.0 177 1-179 33-214 (263)
48 PRK05981 enoyl-CoA hydratase; 100.0 6.2E-44 1.3E-48 280.7 17.2 178 1-179 32-217 (266)
49 PRK08252 enoyl-CoA hydratase; 100.0 7.7E-44 1.7E-48 278.4 17.0 175 1-179 31-205 (254)
50 PRK07938 enoyl-CoA hydratase; 100.0 8.4E-44 1.8E-48 277.4 16.9 175 1-179 29-205 (249)
51 PRK08259 enoyl-CoA hydratase; 100.0 6.9E-44 1.5E-48 278.6 16.2 176 1-179 31-207 (254)
52 PLN03214 probable enoyl-CoA hy 100.0 1E-43 2.2E-48 280.7 16.9 179 1-179 39-222 (278)
53 PLN02921 naphthoate synthase 100.0 1.6E-43 3.6E-48 284.3 17.8 179 1-179 95-275 (327)
54 PRK06495 enoyl-CoA hydratase; 100.0 1.8E-43 3.9E-48 276.8 17.1 175 1-179 31-208 (257)
55 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.3E-43 5E-48 276.2 16.8 177 1-179 33-212 (257)
56 PRK06210 enoyl-CoA hydratase; 100.0 2.4E-43 5.2E-48 278.1 16.4 178 1-179 34-223 (272)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.5E-43 9.8E-48 273.5 17.7 173 1-179 28-201 (251)
58 PRK07509 enoyl-CoA hydratase; 100.0 9.4E-43 2E-47 273.5 17.0 176 1-179 31-214 (262)
59 PRK06213 enoyl-CoA hydratase; 100.0 8.4E-43 1.8E-47 268.8 16.4 176 1-179 30-206 (229)
60 PRK08788 enoyl-CoA hydratase; 100.0 1.4E-42 2.9E-47 274.6 16.8 170 1-170 44-226 (287)
61 PRK08321 naphthoate synthase; 100.0 4.3E-42 9.3E-47 274.3 18.0 179 1-179 53-250 (302)
62 PRK07854 enoyl-CoA hydratase; 100.0 5.9E-42 1.3E-46 266.1 18.0 169 1-179 28-196 (243)
63 PRK05617 3-hydroxyisobutyryl-C 100.0 2.3E-42 5E-47 279.8 16.0 178 1-179 31-275 (342)
64 PRK08290 enoyl-CoA hydratase; 100.0 5.4E-42 1.2E-46 272.1 17.7 176 1-179 32-230 (288)
65 PRK06072 enoyl-CoA hydratase; 100.0 6.6E-42 1.4E-46 266.6 17.1 172 1-179 28-199 (248)
66 PRK07827 enoyl-CoA hydratase; 100.0 5.3E-42 1.1E-46 268.9 16.2 175 1-179 34-212 (260)
67 PRK08272 enoyl-CoA hydratase; 100.0 1.1E-41 2.4E-46 272.2 16.5 175 1-179 38-238 (302)
68 TIGR03200 dearomat_oah 6-oxocy 100.0 1.8E-41 3.8E-46 271.6 16.7 178 1-178 56-251 (360)
69 PLN02157 3-hydroxyisobutyryl-C 100.0 1.7E-41 3.7E-46 278.1 16.6 176 1-179 65-245 (401)
70 PLN02874 3-hydroxyisobutyryl-C 100.0 5.2E-41 1.1E-45 275.0 16.4 156 1-158 39-197 (379)
71 PLN02267 enoyl-CoA hydratase/i 100.0 7.4E-41 1.6E-45 259.2 16.4 177 1-178 27-212 (239)
72 PRK07112 polyketide biosynthes 100.0 7E-41 1.5E-45 261.8 16.2 173 1-179 32-207 (255)
73 PRK12478 enoyl-CoA hydratase; 100.0 7.5E-41 1.6E-45 266.6 16.6 174 1-179 33-223 (298)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 6.1E-41 1.3E-45 247.4 11.1 179 1-179 59-242 (291)
75 PLN02988 3-hydroxyisobutyryl-C 100.0 4.2E-40 9.1E-45 269.0 16.0 175 1-178 37-216 (381)
76 PRK08184 benzoyl-CoA-dihydrodi 100.0 7.6E-40 1.7E-44 277.6 16.8 178 1-179 303-495 (550)
77 TIGR03222 benzo_boxC benzoyl-C 100.0 1.4E-39 3E-44 275.3 17.9 178 1-179 299-491 (546)
78 PRK11730 fadB multifunctional 100.0 2.4E-39 5.2E-44 283.3 17.0 169 1-170 35-207 (715)
79 PLN02851 3-hydroxyisobutyryl-C 100.0 9.8E-39 2.1E-43 261.9 17.4 172 1-175 70-246 (407)
80 KOG1681 Enoyl-CoA isomerase [L 100.0 1.5E-40 3.2E-45 247.2 5.7 178 1-179 50-242 (292)
81 cd06558 crotonase-like Crotona 100.0 1.1E-38 2.3E-43 240.0 15.9 165 1-166 27-194 (195)
82 PRK11154 fadJ multifunctional 100.0 1.2E-38 2.6E-43 278.9 17.6 166 1-166 35-204 (708)
83 TIGR02440 FadJ fatty oxidation 100.0 4.7E-38 1E-42 274.6 17.9 176 1-176 30-222 (699)
84 TIGR02437 FadB fatty oxidation 100.0 6.7E-38 1.5E-42 273.9 16.8 168 1-169 35-206 (714)
85 TIGR03222 benzo_boxC benzoyl-C 100.0 1.4E-37 3.1E-42 263.1 16.6 173 1-173 49-232 (546)
86 KOG0016 Enoyl-CoA hydratase/is 100.0 4.8E-37 1E-41 232.6 15.1 178 1-179 36-221 (266)
87 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.5E-37 9.8E-42 260.7 16.7 173 1-173 53-236 (550)
88 TIGR02441 fa_ox_alpha_mit fatt 100.0 7.3E-37 1.6E-41 267.9 17.0 168 1-169 42-227 (737)
89 COG0447 MenB Dihydroxynaphthoi 100.0 2.5E-36 5.5E-41 223.2 9.4 176 2-179 48-230 (282)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 2.6E-32 5.6E-37 200.4 11.9 176 1-178 60-237 (287)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 4.9E-30 1.1E-34 202.1 12.1 174 1-175 66-244 (401)
92 cd07014 S49_SppA Signal peptid 99.9 5.3E-24 1.1E-28 158.1 12.0 142 2-159 24-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.9 2.2E-22 4.7E-27 150.6 12.3 137 3-159 16-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.8 3.8E-19 8.3E-24 135.5 12.1 85 1-101 22-106 (211)
95 TIGR00705 SppA_67K signal pept 99.8 3.7E-18 8.1E-23 146.9 11.4 150 3-174 332-529 (584)
96 cd00394 Clp_protease_like Case 99.8 2E-17 4.4E-22 120.9 12.4 131 1-150 12-161 (161)
97 cd07023 S49_Sppa_N_C Signal pe 99.7 8.4E-17 1.8E-21 122.4 12.7 85 1-101 18-102 (208)
98 cd07022 S49_Sppa_36K_type Sign 99.7 7.1E-17 1.5E-21 123.3 12.3 138 1-157 26-210 (214)
99 cd07016 S14_ClpP_1 Caseinolyti 99.7 1.7E-16 3.6E-21 116.0 12.9 127 2-150 17-160 (160)
100 TIGR00706 SppA_dom signal pept 99.7 3.8E-16 8.1E-21 118.7 13.1 139 2-160 15-202 (207)
101 cd07018 S49_SppA_67K_type Sign 99.7 1.2E-15 2.7E-20 117.0 11.9 141 1-159 30-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.5 1.8E-13 3.9E-18 101.5 11.8 131 3-153 16-171 (178)
103 PRK10949 protease 4; Provision 99.4 5.6E-12 1.2E-16 109.2 12.6 147 3-170 350-542 (618)
104 cd07015 Clp_protease_NfeD Nodu 99.3 3.7E-11 8.1E-16 88.4 11.7 131 3-153 16-165 (172)
105 cd07013 S14_ClpP Caseinolytic 99.3 5.3E-11 1.2E-15 87.1 11.1 130 2-150 14-162 (162)
106 COG0616 SppA Periplasmic serin 99.2 9.1E-11 2E-15 94.5 11.0 134 3-157 83-266 (317)
107 PRK11778 putative inner membra 99.1 8.9E-10 1.9E-14 88.6 10.4 104 58-161 147-294 (330)
108 cd07017 S14_ClpP_2 Caseinolyti 99.1 1.3E-09 2.8E-14 80.4 9.9 130 2-150 23-171 (171)
109 PRK12553 ATP-dependent Clp pro 99.0 3.9E-09 8.5E-14 80.2 11.3 133 2-153 49-202 (207)
110 PRK00277 clpP ATP-dependent Cl 99.0 9.8E-09 2.1E-13 77.6 11.8 99 55-153 79-196 (200)
111 PRK14512 ATP-dependent Clp pro 99.0 1.1E-08 2.4E-13 77.0 11.1 104 54-157 70-193 (197)
112 PF00574 CLP_protease: Clp pro 99.0 2E-09 4.3E-14 80.2 6.9 100 54-153 63-181 (182)
113 TIGR00705 SppA_67K signal pept 98.9 3.7E-08 7.9E-13 85.5 14.5 84 2-101 78-161 (584)
114 CHL00028 clpP ATP-dependent Cl 98.9 3.9E-08 8.5E-13 74.2 11.0 100 55-154 78-197 (200)
115 TIGR00493 clpP ATP-dependent C 98.9 5.5E-08 1.2E-12 73.0 11.8 131 3-152 41-190 (191)
116 CHL00198 accA acetyl-CoA carbo 98.9 1.8E-07 3.9E-12 74.9 15.1 116 51-176 178-306 (322)
117 PF01343 Peptidase_S49: Peptid 98.8 4.4E-09 9.6E-14 76.3 4.9 43 61-103 2-44 (154)
118 PRK12319 acetyl-CoA carboxylas 98.8 2.9E-07 6.2E-12 71.9 15.2 116 51-176 122-246 (256)
119 PRK10949 protease 4; Provision 98.8 1.3E-07 2.9E-12 82.3 13.9 84 2-101 97-180 (618)
120 PRK12551 ATP-dependent Clp pro 98.8 2E-07 4.4E-12 70.1 11.6 100 55-154 73-191 (196)
121 PRK05724 acetyl-CoA carboxylas 98.7 8.3E-07 1.8E-11 71.1 15.4 116 51-176 175-303 (319)
122 PRK14514 ATP-dependent Clp pro 98.7 2.5E-07 5.3E-12 70.7 11.6 99 55-153 102-219 (221)
123 TIGR00513 accA acetyl-CoA carb 98.7 8.4E-07 1.8E-11 71.0 14.9 116 51-176 175-303 (316)
124 KOG1683 Hydroxyacyl-CoA dehydr 98.7 2E-09 4.4E-14 86.5 -0.6 158 2-160 84-249 (380)
125 PLN03230 acetyl-coenzyme A car 98.7 1E-06 2.2E-11 72.5 14.8 116 51-176 245-373 (431)
126 PLN03229 acetyl-coenzyme A car 98.7 1.3E-06 2.9E-11 76.0 15.5 117 50-176 265-394 (762)
127 PRK14513 ATP-dependent Clp pro 98.7 5.3E-07 1.1E-11 68.0 11.5 98 55-154 75-193 (201)
128 PF01972 SDH_sah: Serine dehyd 98.5 1E-06 2.3E-11 68.6 9.2 93 3-117 78-170 (285)
129 COG0740 ClpP Protease subunit 98.5 2.3E-06 5E-11 64.1 10.6 99 56-154 76-193 (200)
130 TIGR03134 malonate_gamma malon 98.4 2.1E-05 4.5E-10 60.9 13.6 98 49-155 88-191 (238)
131 COG1030 NfeD Membrane-bound se 98.3 6.8E-06 1.5E-10 68.0 10.9 131 2-152 42-187 (436)
132 TIGR03133 malonate_beta malona 98.3 1.6E-05 3.4E-10 62.7 12.4 81 61-153 133-217 (274)
133 PRK12552 ATP-dependent Clp pro 98.3 1.5E-05 3.2E-10 60.9 11.3 97 55-153 97-214 (222)
134 PRK05654 acetyl-CoA carboxylas 98.3 4.6E-05 1E-09 60.7 14.4 140 3-172 143-285 (292)
135 TIGR00515 accD acetyl-CoA carb 98.2 6.5E-05 1.4E-09 59.7 13.3 140 3-170 142-282 (285)
136 PRK07189 malonate decarboxylas 98.2 3.7E-05 7.9E-10 61.4 11.2 41 61-102 142-184 (301)
137 CHL00174 accD acetyl-CoA carbo 98.1 0.00026 5.6E-09 56.3 14.3 136 3-166 155-292 (296)
138 COG0825 AccA Acetyl-CoA carbox 98.0 2E-05 4.4E-10 61.8 7.3 91 52-152 175-265 (317)
139 TIGR01117 mmdA methylmalonyl-C 98.0 0.00036 7.8E-09 59.9 14.3 149 4-170 338-498 (512)
140 COG0777 AccD Acetyl-CoA carbox 98.0 0.00024 5.1E-09 55.5 11.7 140 3-172 144-286 (294)
141 PF01039 Carboxyl_trans: Carbo 97.8 0.00073 1.6E-08 57.9 13.1 85 58-168 125-217 (493)
142 PLN02820 3-methylcrotonyl-CoA 97.5 0.0015 3.2E-08 56.8 10.7 116 48-170 422-557 (569)
143 TIGR01117 mmdA methylmalonyl-C 97.4 0.0031 6.6E-08 54.3 11.6 84 64-169 153-245 (512)
144 PLN02820 3-methylcrotonyl-CoA 97.3 0.013 2.9E-07 51.0 14.5 85 61-167 201-294 (569)
145 PF01039 Carboxyl_trans: Carbo 97.2 0.0024 5.3E-08 54.7 8.7 149 6-171 319-482 (493)
146 COG4799 Acetyl-CoA carboxylase 96.9 0.0073 1.6E-07 51.7 8.6 35 61-96 160-194 (526)
147 KOG0840 ATP-dependent Clp prot 96.2 0.049 1.1E-06 42.4 8.8 91 57-152 142-256 (275)
148 COG4799 Acetyl-CoA carboxylase 95.6 0.037 8E-07 47.5 6.3 121 45-171 377-512 (526)
149 KOG0540 3-Methylcrotonyl-CoA c 94.1 0.31 6.8E-06 41.0 7.7 111 47-170 404-524 (536)
150 COG0074 SucD Succinyl-CoA synt 91.4 0.95 2.1E-05 36.0 6.7 54 4-77 187-240 (293)
151 PF06833 MdcE: Malonate decarb 87.9 5.5 0.00012 30.9 8.4 93 52-153 92-187 (234)
152 PTZ00187 succinyl-CoA syntheta 87.9 1.7 3.7E-05 35.3 5.9 54 4-77 211-264 (317)
153 PF13607 Succ_CoA_lig: Succiny 87.2 2.3 5E-05 30.2 5.6 52 4-76 41-92 (138)
154 TIGR00237 xseA exodeoxyribonuc 86.1 2 4.4E-05 36.4 5.7 82 3-102 173-256 (432)
155 PF00549 Ligase_CoA: CoA-ligas 85.1 2.3 4.9E-05 30.8 4.8 62 4-78 60-121 (153)
156 PLN02522 ATP citrate (pro-S)-l 84.8 3.2 6.9E-05 36.7 6.4 53 4-77 209-262 (608)
157 PF02601 Exonuc_VII_L: Exonucl 84.1 2.9 6.3E-05 33.7 5.6 76 3-97 58-137 (319)
158 COG1570 XseA Exonuclease VII, 83.3 2.7 5.9E-05 35.5 5.2 81 3-101 179-261 (440)
159 smart00250 PLEC Plectin repeat 79.4 1.6 3.6E-05 23.5 1.8 18 132-149 18-35 (38)
160 PLN00125 Succinyl-CoA ligase [ 77.9 8.1 0.00018 31.2 6.0 54 4-77 192-245 (300)
161 TIGR01019 sucCoAalpha succinyl 76.0 9 0.0002 30.7 5.8 52 4-77 185-237 (286)
162 PF00681 Plectin: Plectin repe 75.5 1.2 2.6E-05 25.1 0.5 19 132-150 18-36 (45)
163 PRK00286 xseA exodeoxyribonucl 74.4 7.5 0.00016 32.9 5.3 79 3-101 179-260 (438)
164 PRK05678 succinyl-CoA syntheta 72.2 12 0.00027 30.0 5.7 23 4-26 187-209 (291)
165 PRK06091 membrane protein FdrA 70.4 14 0.00031 32.3 6.0 52 5-77 240-291 (555)
166 PRK05665 amidotransferase; Pro 65.8 10 0.00022 29.4 4.0 27 49-75 75-101 (240)
167 TIGR02717 AcCoA-syn-alpha acet 64.7 9.8 0.00021 32.4 4.0 53 4-77 190-242 (447)
168 KOG1255 Succinyl-CoA synthetas 63.9 29 0.00062 27.3 5.9 56 4-76 218-273 (329)
169 KOG3179 Predicted glutamine sy 58.2 27 0.00058 26.7 4.8 46 16-75 58-103 (245)
170 PRK13505 formate--tetrahydrofo 57.5 22 0.00047 31.2 4.8 73 15-88 322-395 (557)
171 PF12268 DUF3612: Protein of u 55.2 10 0.00023 27.2 2.1 24 16-40 78-101 (178)
172 KOG4230 C1-tetrahydrofolate sy 50.7 31 0.00068 30.7 4.6 62 6-82 353-425 (935)
173 PF01990 ATP-synt_F: ATP synth 50.4 50 0.0011 21.4 4.8 51 3-76 28-79 (95)
174 PRK06490 glutamine amidotransf 50.0 32 0.00068 26.7 4.3 26 50-75 71-96 (239)
175 cd01741 GATase1_1 Subgroup of 47.3 32 0.00069 25.2 3.8 26 51-76 67-92 (188)
176 PRK09065 glutamine amidotransf 45.3 33 0.00072 26.4 3.8 26 50-75 73-98 (237)
177 PRK11148 cyclic 3',5'-adenosin 43.9 89 0.0019 24.4 6.1 57 3-77 40-97 (275)
178 KOG3040 Predicted sugar phosph 41.3 1.1E+02 0.0024 23.6 5.8 30 52-81 125-163 (262)
179 PF04439 Adenyl_transf: Strept 40.8 27 0.00058 27.9 2.6 22 5-26 8-29 (282)
180 PRK02228 V-type ATP synthase s 40.1 1.1E+02 0.0024 20.2 6.7 49 3-74 30-79 (100)
181 COG3581 Uncharacterized protei 39.9 1.2E+02 0.0025 25.7 6.2 57 1-72 55-111 (420)
182 PRK11866 2-oxoacid ferredoxin 38.2 77 0.0017 25.3 4.9 22 13-35 73-94 (279)
183 PF00763 THF_DHG_CYH: Tetrahyd 37.4 39 0.00084 23.0 2.7 24 3-26 73-96 (117)
184 cd07402 MPP_GpdQ Enterobacter 37.4 1.4E+02 0.0031 22.3 6.2 58 3-78 25-83 (240)
185 COG0252 AnsB L-asparaginase/ar 37.4 1.4E+02 0.0029 24.8 6.3 25 2-26 85-109 (351)
186 COG0793 Prc Periplasmic protea 37.1 34 0.00073 28.9 2.8 81 3-85 219-307 (406)
187 PF01268 FTHFS: Formate--tetra 36.9 43 0.00094 29.4 3.5 77 13-90 319-396 (557)
188 smart00870 Asparaginase Aspara 36.6 1.4E+02 0.0031 24.2 6.4 23 3-25 63-85 (323)
189 PLN03037 lipase class 3 family 36.1 41 0.00089 29.3 3.2 40 52-91 302-341 (525)
190 PRK05368 homoserine O-succinyl 36.0 83 0.0018 25.5 4.8 66 4-86 87-152 (302)
191 TIGR00520 asnASE_II L-asparagi 35.8 1.5E+02 0.0031 24.6 6.3 24 3-26 91-114 (349)
192 KOG0333 U5 snRNP-like RNA heli 34.6 80 0.0017 27.9 4.6 34 64-97 349-383 (673)
193 PF06258 Mito_fiss_Elm1: Mitoc 34.0 2.5E+02 0.0055 22.7 7.8 37 67-103 209-245 (311)
194 PRK02261 methylaspartate mutas 33.8 53 0.0012 23.1 3.0 30 139-169 106-135 (137)
195 PRK14046 malate--CoA ligase su 33.4 2.9E+02 0.0063 23.2 8.2 67 3-85 296-362 (392)
196 PRK07053 glutamine amidotransf 32.6 60 0.0013 25.0 3.4 25 51-75 69-93 (234)
197 COG4032 Predicted thiamine-pyr 32.5 56 0.0012 23.5 2.9 38 2-39 27-65 (172)
198 COG1618 Predicted nucleotide k 32.5 63 0.0014 23.9 3.2 25 51-75 116-140 (179)
199 PRK05778 2-oxoglutarate ferred 32.2 1.4E+02 0.0029 24.2 5.4 27 8-35 79-105 (301)
200 PF00195 Chal_sti_synt_N: Chal 32.2 78 0.0017 24.5 3.9 76 4-98 107-184 (226)
201 COG1509 KamA Lysine 2,3-aminom 31.7 1.1E+02 0.0023 25.5 4.8 24 3-26 144-167 (369)
202 PF05677 DUF818: Chlamydia CHL 30.9 1.6E+02 0.0036 24.4 5.7 70 9-88 163-235 (365)
203 PRK13317 pantothenate kinase; 30.6 2.8E+02 0.006 22.1 8.0 21 12-32 42-62 (277)
204 PRK11867 2-oxoglutarate ferred 30.4 1.4E+02 0.003 23.9 5.2 26 9-35 79-104 (286)
205 PTZ00386 formyl tetrahydrofola 29.5 1.1E+02 0.0024 27.3 4.7 74 16-90 388-462 (625)
206 PRK13525 glutamine amidotransf 29.4 67 0.0015 23.8 3.1 22 54-75 61-82 (189)
207 PRK04183 glutamyl-tRNA(Gln) am 29.0 1.7E+02 0.0037 24.9 5.7 24 3-26 139-162 (419)
208 PF01738 DLH: Dienelactone hyd 28.5 1.2E+02 0.0026 22.4 4.5 39 51-89 79-119 (218)
209 PF02358 Trehalose_PPase: Treh 28.1 92 0.002 23.7 3.8 25 55-79 25-49 (235)
210 PF02590 SPOUT_MTase: Predicte 27.9 2.3E+02 0.0051 20.4 6.3 44 52-95 83-126 (155)
211 COG0107 HisF Imidazoleglycerol 27.9 87 0.0019 24.5 3.4 35 19-71 170-205 (256)
212 PRK13143 hisH imidazole glycer 27.9 1.2E+02 0.0026 22.5 4.3 28 49-76 55-82 (200)
213 COG0412 Dienelactone hydrolase 27.8 1.2E+02 0.0026 23.3 4.3 39 51-89 93-133 (236)
214 PRK11096 ansB L-asparaginase I 27.5 1.9E+02 0.0041 23.9 5.6 21 3-25 88-108 (347)
215 PTZ00293 thymidine kinase; Pro 27.3 1.8E+02 0.0039 22.2 5.1 42 50-91 88-134 (211)
216 KOG0595 Serine/threonine-prote 27.2 59 0.0013 27.5 2.6 32 31-62 90-126 (429)
217 COG2759 MIS1 Formyltetrahydrof 26.5 1.4E+02 0.003 25.9 4.6 68 6-88 40-118 (554)
218 TIGR02129 hisA_euk phosphoribo 26.0 2.1E+02 0.0046 22.5 5.4 46 7-71 162-207 (253)
219 PRK13507 formate--tetrahydrofo 25.8 1.7E+02 0.0037 26.0 5.2 76 14-90 342-426 (587)
220 PRK07567 glutamine amidotransf 25.8 2E+02 0.0044 22.2 5.3 22 54-75 82-103 (242)
221 cd01745 GATase1_2 Subgroup of 25.6 1.6E+02 0.0034 21.7 4.5 21 55-75 90-110 (189)
222 cd07393 MPP_DR1119 Deinococcus 25.5 3E+02 0.0065 20.8 6.5 22 3-26 29-50 (232)
223 TIGR01016 sucCoAbeta succinyl- 25.5 3.3E+02 0.0072 22.5 6.8 21 3-23 296-316 (386)
224 PLN02408 phospholipase A1 25.0 90 0.002 26.0 3.3 21 71-91 203-223 (365)
225 PRK00103 rRNA large subunit me 25.0 2.7E+02 0.0059 20.1 6.2 40 54-93 85-124 (157)
226 PF04208 MtrA: Tetrahydrometha 24.9 1.2E+02 0.0025 22.5 3.5 23 5-27 55-77 (176)
227 PF08338 DUF1731: Domain of un 24.8 19 0.00041 20.5 -0.5 30 119-150 8-37 (48)
228 PRK04342 DNA topoisomerase VI 24.6 2.6E+02 0.0056 23.3 5.9 48 64-111 240-289 (367)
229 TIGR00519 asnASE_I L-asparagin 24.5 2.3E+02 0.0051 23.1 5.7 9 3-11 65-73 (336)
230 TIGR02153 gatD_arch glutamyl-t 24.1 2.7E+02 0.0058 23.6 6.0 24 3-26 126-149 (404)
231 cd03376 TPP_PFOR_porB_like Thi 24.1 2.6E+02 0.0056 21.5 5.6 22 5-26 68-89 (235)
232 PRK15098 beta-D-glucoside gluc 23.6 2.5E+02 0.0054 25.9 6.2 66 5-80 492-558 (765)
233 COG0761 lytB 4-Hydroxy-3-methy 23.5 1.1E+02 0.0024 24.6 3.4 14 23-37 5-18 (294)
234 COG1105 FruK Fructose-1-phosph 23.4 3E+02 0.0064 22.5 5.9 54 4-77 118-171 (310)
235 PRK14053 methyltransferase; Pr 23.4 1.3E+02 0.0029 22.5 3.6 33 5-37 52-84 (194)
236 smart00463 SMR Small MutS-rela 23.2 1.8E+02 0.0039 17.9 3.9 26 2-27 15-41 (80)
237 PRK08250 glutamine amidotransf 22.9 1.3E+02 0.0028 23.2 3.7 21 55-75 74-94 (235)
238 KOG1151 Tousled-like protein k 22.6 1.5E+02 0.0032 25.9 4.2 52 28-79 540-611 (775)
239 PF08436 DXP_redisom_C: 1-deox 22.1 1.1E+02 0.0025 19.7 2.6 16 16-31 21-36 (84)
240 cd07378 MPP_ACP5 Homo sapiens 22.0 2.2E+02 0.0047 22.0 4.9 67 4-80 19-85 (277)
241 TIGR01111 mtrA N5-methyltetrah 21.8 1.4E+02 0.0031 23.1 3.6 33 5-37 59-91 (238)
242 COG0329 DapA Dihydrodipicolina 21.7 4.3E+02 0.0092 21.2 7.5 71 3-87 25-95 (299)
243 PRK11366 puuD gamma-glutamyl-g 21.4 1.5E+02 0.0033 23.1 3.9 21 55-75 97-117 (254)
244 TIGR01501 MthylAspMutase methy 21.4 1.1E+02 0.0024 21.6 2.8 27 139-166 104-130 (134)
245 PLN02310 triacylglycerol lipas 21.4 1.3E+02 0.0029 25.4 3.7 21 70-90 211-231 (405)
246 COG2101 SPT15 TATA-box binding 21.3 2.4E+02 0.0052 21.0 4.5 20 14-35 50-69 (185)
247 COG0106 HisA Phosphoribosylfor 21.3 3.6E+02 0.0078 21.1 5.8 49 5-71 149-197 (241)
248 PRK00696 sucC succinyl-CoA syn 21.0 4.8E+02 0.01 21.6 7.5 22 3-24 296-317 (388)
249 PRK00964 tetrahydromethanopter 20.9 1.5E+02 0.0032 22.9 3.5 31 5-35 59-89 (225)
250 KOG4569 Predicted lipase [Lipi 20.9 1E+02 0.0023 25.1 3.0 41 53-93 156-196 (336)
251 PRK03957 V-type ATP synthase s 20.7 1.4E+02 0.0031 19.7 3.1 23 3-25 30-52 (100)
252 PRK01175 phosphoribosylformylg 20.7 2E+02 0.0044 22.6 4.4 22 54-75 78-99 (261)
253 COG4555 NatA ABC-type Na+ tran 20.3 3.1E+02 0.0067 21.3 5.1 61 14-97 150-210 (245)
No 1
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=3.1e-46 Score=291.41 Aligned_cols=179 Identities=71% Similarity=1.100 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.+++++++.|+++|+|||||.++++||+|.|++++ .........+...++.++.++.++|||+||+|||+|+|+
T Consensus 23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG 102 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence 6789999999999999999999999866899999999987 322333444556667788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~ 182 (251)
T PLN02600 103 GLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEK 182 (251)
T ss_pred hHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 183 a~~~a~~la~~~p~a~~~~K 202 (251)
T PLN02600 183 ALELAQEINQKGPLAIKMAK 202 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 2
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-46 Score=291.67 Aligned_cols=178 Identities=30% Similarity=0.527 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++|+|||||.++++||+|.|++++ ..+......+...++.++..+.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 5789999999999999999999999954799999999987 323333444556677888999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|+ |++++++++++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (256)
T PRK06143 115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAA 193 (256)
T ss_pred hHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHH
Confidence 9999999999999999999999999998 778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (256)
T PRK06143 194 VERLAASLAGCGPQALRQQK 213 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
No 3
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-46 Score=291.87 Aligned_cols=179 Identities=36% Similarity=0.557 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++ ..+......+...+..++.++.++||||||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 6789999999999999999999999955799999999987 222222333445566788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (258)
T PRK09076 110 GLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREA 189 (258)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 190 a~~~a~~l~~~~~~a~~~~K 209 (258)
T PRK09076 190 ALALAQKVANQSPSAVAACK 209 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999877
No 4
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.7e-46 Score=285.38 Aligned_cols=178 Identities=28% Similarity=0.444 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++ ...........+.+++++.++.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA 113 (222)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence 57899999999999999999999998 7899999999987 222222233345567788999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (222)
T PRK05869 114 GLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA 193 (222)
T ss_pred HHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 194 a~~~a~~ia~~~~~a~~~~K 213 (222)
T PRK05869 194 AAAWARRFLDGPPHALAAAK 213 (222)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
No 5
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-46 Score=290.72 Aligned_cols=179 Identities=33% Similarity=0.517 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++.|+++|+|||||.++++||+|.|++++ .. . ......+.+...+++.++.++|||+||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 6789999999999999999999999844799999999987 21 1 11234455556678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+++++
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 191 LLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
No 6
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=6.3e-46 Score=290.41 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++++.++.|+++|+|||||.+++.||+|.|++++....+........+..++..+.++|||+||+|||+|+|||
T Consensus 30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 109 (256)
T TIGR03210 30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGG 109 (256)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhh
Confidence 67899999999999999999999999558999999999872211111112234566888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.+++
T Consensus 110 ~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (256)
T TIGR03210 110 NVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV 189 (256)
T ss_pred HHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 190 ~~~a~~ia~~~~~a~~~~K 208 (256)
T TIGR03210 190 QKWCDEIVEKSPTAIAIAK 208 (256)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
No 7
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-46 Score=290.14 Aligned_cols=179 Identities=48% Similarity=0.784 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||.+++.||+|.|+.++ .........+...+..++..+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG 111 (260)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence 6789999999999999999999999944699999999987 323333444555667788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK07657 112 GLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++.+||.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07657 192 AIEIAEKIASNGPIAVRQAK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 8
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-45 Score=290.72 Aligned_cols=178 Identities=29% Similarity=0.365 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||. +++||+|.|+.++. . ...........+..++..+.++||||||+|||+|+
T Consensus 40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 57899999999999999999999998 68999999998872 1 11223334455567888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++|+||+++||||++++++++.
T Consensus 119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (268)
T PRK07327 119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELL 198 (268)
T ss_pred ehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 199 ~~a~~~a~~la~~~~~a~~~~K 220 (268)
T PRK07327 199 PKALEVAERLAAGSQTAIRWTK 220 (268)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
No 9
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=288.92 Aligned_cols=179 Identities=32% Similarity=0.498 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||||.++++||+|.|++++ .. ..+....+...+.+++..+.++|||+||+|||+|+|
T Consensus 36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 115 (262)
T PRK06144 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG 115 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence 5789999999999999999999999855799999999987 22 122233344556778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeeccccc-ccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~-~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
||++|+++||+||++++++|++||.+ +|++|++++++++++++|..++++++++|++++++||+++||||+|++++++.
T Consensus 116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 195 (262)
T PRK06144 116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALD 195 (262)
T ss_pred hHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~i~~~~~~a~~~~K 217 (262)
T PRK06144 196 ARADALAELLAAHAPLTLRATK 217 (262)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
No 10
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-45 Score=287.81 Aligned_cols=178 Identities=23% Similarity=0.352 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.++++.++.|+++|+|||+|. +++||+|.|++++.........+...+.+++..+.++||||||+|||+|+|||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 112 (251)
T PRK06023 34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIG 112 (251)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHH
Confidence 68899999999999999999999998 78999999998872111111123345567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++++++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.+++
T Consensus 113 ~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 192 (251)
T PRK06023 113 TTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAET 192 (251)
T ss_pred HHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 193 ~~~a~~l~~~~~~a~~~~K 211 (251)
T PRK06023 193 LKAAEELAAKPPQALQIAR 211 (251)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999877
No 11
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-45 Score=286.89 Aligned_cols=176 Identities=34% Similarity=0.575 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++ +++|+|||||. |+.||+|.|++++. ............++.++.++.++|||+||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T PRK08150 30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG 106 (255)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence 6789999999987 79999999998 78999999999872 22222233345567788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (255)
T PRK08150 107 GLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDK 186 (255)
T ss_pred HHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK08150 187 AMELARRIAQNAPLTNFAVL 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 12
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2.1e-45 Score=290.08 Aligned_cols=178 Identities=29% Similarity=0.433 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-C-c-h-hHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-S-P-S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~-~-~-~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ .. . . . ........+..++..+.++||||||+|||+
T Consensus 36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998 7899999999886 21 1 1 1 122233345567888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++|||++|+|+++
T Consensus 115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred EechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 195 l~~~a~~~a~~la~~~p~a~~~~K 218 (275)
T PRK09120 195 LRARTRELAAKLLEKNPVVLRAAK 218 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999887
No 13
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=3.3e-45 Score=287.03 Aligned_cols=179 Identities=36% Similarity=0.595 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||.+++.||+|.|++++ .........+.....+++..+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 5789999999999999999999999844899999999987 322222333444556788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++++||+++||||+|++++++.++
T Consensus 112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK05809 112 GCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEE 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 192 a~~~a~~la~~~~~a~~~~K 211 (260)
T PRK05809 192 AKALANKIAANAPIAVKLCK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
No 14
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.8e-45 Score=287.18 Aligned_cols=179 Identities=28% Similarity=0.462 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.++++.++.|+++|+|||||.++++||+|.|++++.. ...........+..++..+.++|||+||+|||+|+|
T Consensus 31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (259)
T TIGR01929 31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG 110 (259)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence 678999999999999999999999994489999999987621 111111111123467788999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+|+|++++.+
T Consensus 111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 190 (259)
T TIGR01929 111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEK 190 (259)
T ss_pred HHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 191 ~a~~~a~~la~~~~~a~~~~K 211 (259)
T TIGR01929 191 ETVRWCREILQKSPMAIRMLK 211 (259)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
No 15
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-45 Score=286.36 Aligned_cols=177 Identities=33% Similarity=0.475 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. ++.||+|.|+.++......... ...++.++..+.++|||+||+|||+|+|+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG 109 (258)
T PRK06190 32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA-QDALPNPSPAWPAMRKPVIGAINGAAVTGG 109 (258)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH-HHHHHHHHHHHHhCCCCEEEEECCEeecHH
Confidence 67899999999999999999999998 7999999999987221111111 234567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+++|++++.+++
T Consensus 110 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 189 (258)
T PRK06190 110 LELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRA 189 (258)
T ss_pred HHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 190 ~~~a~~la~~~~~a~~~~K 208 (258)
T PRK06190 190 RRLAASIAGNNPAAVRALK 208 (258)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999887
No 16
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-45 Score=287.90 Aligned_cols=179 Identities=30% Similarity=0.507 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.+++++++.|+++++|||+|.+++.||+|.|++++ .. ..+....+......++..+.++||||||+|||+|+
T Consensus 39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 6789999999999999999999999855899999999987 21 12223344455667888899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|+|++|+++||+||++++++|++||.++|++|++++++++++++|.+++++++++|++++++||+++||||+|+|++++.
T Consensus 119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (269)
T PRK06127 119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198 (269)
T ss_pred cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 199 ~~a~~~a~~l~~~~~~a~~~~K 220 (269)
T PRK06127 199 TALADYAATIAGNAPLTLRAAK 220 (269)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
No 17
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-45 Score=285.67 Aligned_cols=177 Identities=33% Similarity=0.528 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||+|. ++.||+|.|++++.... ....+...+..++.++.++||||||+|||+|+|||
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG 109 (257)
T PRK05862 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLS-FMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGG 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccc-hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHH
Confidence 67899999999999999999999998 78999999999872111 11122233455778899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||++++++++.+++
T Consensus 110 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (257)
T PRK05862 110 CELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEA 189 (257)
T ss_pred HHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.+|.+++.+|
T Consensus 190 ~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK05862 190 LAAATTIASFSLPAVMMAK 208 (257)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
No 18
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-45 Score=285.78 Aligned_cols=178 Identities=38% Similarity=0.621 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||+|. |+.||+|.|++++ .... .....+....+.++.++.++|||+||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G 107 (257)
T PRK07658 29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG 107 (257)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence 67899999999999999999999998 7899999999987 2221 2333344556778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.+
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 187 (257)
T PRK07658 108 GGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLD 187 (257)
T ss_pred HHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 188 ~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK07658 188 DAKKLAKKIAGKSPATTRAVL 208 (257)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
No 19
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-45 Score=287.25 Aligned_cols=178 Identities=30% Similarity=0.499 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC------chh-HHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS------PSE-IHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~------~~~-~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.+++++++.|+++|+|||+|. |++||+|.|++++ ... ... ...+...+..++.++.++|||+||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999999999999998 7999999999887 211 111 12233345667888999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|++
T Consensus 111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK09245 111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190 (266)
T ss_pred CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++.+++.+++++++++||.+++.+|
T Consensus 191 ~~~l~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK09245 191 ADQLLPAARALAERIAANPPHALRLTK 217 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999887
No 20
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=5e-45 Score=286.13 Aligned_cols=178 Identities=30% Similarity=0.497 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||.++++||+|.|++++. ..... ..+.......+.++.++|||+||+|||+|+||
T Consensus 30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (261)
T PRK03580 30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG 108 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence 67899999999999999999999999558999999999872 21111 11212223456788999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (261)
T PRK03580 109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188 (261)
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (261)
T PRK03580 189 ARELAQQLVNSAPLAIAALK 208 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 21
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-45 Score=288.12 Aligned_cols=178 Identities=26% Similarity=0.426 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C-----------chhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S-----------PSEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++.. . ..........+.+++..+.++||||
T Consensus 34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 112 (272)
T PRK06142 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV 112 (272)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67899999999999999999999998 789999999988721 0 1122233445667888899999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~ 148 (179)
||+|||+|+|||++|+++||+||++++++|++||.++|++|+.|+++++++++|..++++++++|++++++||+++||||
T Consensus 113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~ 192 (272)
T PRK06142 113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVN 192 (272)
T ss_pred EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 149 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 149 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+|+++ +++++++.++++++++.||.+++.+|
T Consensus 193 ~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 193 RVYDDADALLAAAHATAREIAAKSPLAVRGTK 224 (272)
T ss_pred EecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99985 88999999999999999999999887
No 22
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-45 Score=285.17 Aligned_cols=178 Identities=28% Similarity=0.480 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+++|.+++++++.|+++|+|||+|. ++.||+|.|++++ .. .......+...+++++..+.++|||+||+|||+|
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999998 7999999999987 21 2233344556677889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|+|++|+++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|++++++||+++||||+|++++++
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.++..+|
T Consensus 190 ~~~a~~~a~~l~~~~~~~~~~~K 212 (260)
T PRK07511 190 LAEALALADQLAAGSPNALARIK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
No 23
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-45 Score=285.67 Aligned_cols=178 Identities=25% Similarity=0.331 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHH-HHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRS-TFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++|+|||+|. |+.||+|.|++++.. .......+.....+ +...+.++||||||+|||+|+|
T Consensus 27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK06563 27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence 67899999999999999999999998 789999999998721 11111112111222 2335789999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|++++++.+
T Consensus 106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (255)
T PRK06563 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLE 185 (255)
T ss_pred HHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK06563 186 RAIELAERIARAAPLGVQATL 206 (255)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
No 24
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=9.2e-46 Score=282.46 Aligned_cols=176 Identities=41% Similarity=0.682 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++..+++|++++++||||. ++.||+|.|+.++.. ...+.. ...+.+.+..+.+.+||+|+++||+|+||
T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG 141 (290)
T KOG1680|consen 65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG 141 (290)
T ss_pred HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence 57899999999999999999999999 799999999998721 111111 01122334444589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+|||.++++|++|+.++|++|.+|++.+|++.+|.++|++++++|++++++||+++||||+|+|.++++++
T Consensus 142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~e 221 (290)
T KOG1680|consen 142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGE 221 (290)
T ss_pred chhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
|.+++++|+++||.++++.|
T Consensus 222 Av~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 222 AVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 25
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=6.3e-45 Score=284.68 Aligned_cols=177 Identities=37% Similarity=0.570 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++.... ....+.+....+++.+.++||||||+|||+|+|+|
T Consensus 30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 107 (255)
T PRK09674 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKD-LAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAG 107 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccc-hhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHH
Confidence 67899999999999999999999998 79999999998872111 11122234456788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||+|++++++.+++
T Consensus 108 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a 187 (255)
T PRK09674 108 CELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERA 187 (255)
T ss_pred HHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 188 ~~~a~~l~~~~~~a~~~~K 206 (255)
T PRK09674 188 LQLASKIARHSPLALRAAK 206 (255)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999877
No 26
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-45 Score=284.80 Aligned_cols=177 Identities=36% Similarity=0.577 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++++.+++|+++|+|||+|. +++||+|.|++++.... ....+...+.+++..+.++|||+||+|||+|+|+|
T Consensus 36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 113 (261)
T PRK08138 36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAG-AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGG 113 (261)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccc-hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHH
Confidence 67899999999999999999999998 78999999998872111 12223345567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.+++
T Consensus 114 ~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 193 (261)
T PRK08138 114 CELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRA 193 (261)
T ss_pred HHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 194 ~~~a~~l~~~~~~a~~~~K 212 (261)
T PRK08138 194 LELAREIARMPPLALAQIK 212 (261)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
No 27
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-44 Score=285.03 Aligned_cols=177 Identities=28% Similarity=0.443 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||||. |+.||+|.|++++. . ..+....+.+.+.+++.++.++|||+||+|||+|+|
T Consensus 39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (266)
T PRK08139 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA 117 (266)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 67899999999999999999999999 78999999999872 2 122233444556678889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||.++|++|+++ ++++++++|..++++++++|++++++||+++||||+|+|++++.+
T Consensus 118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 196 (266)
T PRK08139 118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDA 196 (266)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHH
Confidence 9999999999999999999999999999999765 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 197 ~a~~~a~~la~~~~~a~~~~K 217 (266)
T PRK08139 197 AVARLAAVIAAKSPAAVRIGK 217 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
No 28
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.1e-44 Score=283.49 Aligned_cols=177 Identities=28% Similarity=0.462 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C--chhH-HHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S--PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+ +++|||||. ++.||+|.|++++.. . .... ......+..+++++.++||||||+|||+|
T Consensus 27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 6789999999999998 999999998 789999999998721 1 1111 12222335577889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.||.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~~~~~~K 207 (256)
T TIGR02280 185 MDEAQALAVHLAAQPTRGLALTK 207 (256)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998887
No 29
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-45 Score=283.75 Aligned_cols=178 Identities=22% Similarity=0.362 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.|+++++|||+|. +++||+|.|++++.. .. .....+.+.+++++.++.++||||||+|||+
T Consensus 30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 67899999999999999999999998 789999999998721 11 1222334456678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||.++|++|+.++++++++.+|+.++++++++|++++|+||+++||||+++++++
T Consensus 109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.+|.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 189 LEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999887
No 30
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.1e-44 Score=286.12 Aligned_cols=178 Identities=30% Similarity=0.527 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-----------hhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+++|.++++.++.|+++|+|||||. |+.||+|.|++++ .... +....+...+++++..+.++||||
T Consensus 36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 114 (275)
T PLN02664 36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67899999999999999999999998 7899999999987 2110 112223344567788899999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~ 148 (179)
||+|||+|+|||++|+++||++|++++++|++||+++|++|+.|.++++++++|.+++++++++|++++++||+++||||
T Consensus 115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~ 194 (275)
T PLN02664 115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194 (275)
T ss_pred EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 149 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 149 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++|+ +++.+++.+++++++++||.+++.+|
T Consensus 195 ~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K 226 (275)
T PLN02664 195 RVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226 (275)
T ss_pred eeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99985 88999999999999999999999887
No 31
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-44 Score=284.08 Aligned_cols=177 Identities=28% Similarity=0.461 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++ .. ...........+.+++..+.++|||+||+|||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999999 6899999999876 21 1112222234566788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++.+ ++++++|..++++++++|++++|+||+++||||+|+|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEAL 189 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHH
Confidence 99999999999999999999999999999999988765 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (262)
T PRK05995 190 DAKVDELLAALVANSPQAVRAGK 212 (262)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999876
No 32
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.3e-45 Score=285.08 Aligned_cols=177 Identities=26% Similarity=0.395 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++.. .. .........+.+++..+.++||||||+|||+|
T Consensus 34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 67899999999999999999999999 799999999998721 11 11112233456788889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++.+ .+++++|.+++++++++|++++++||+++||||+|+|++++
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAEL 191 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999987665 58889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 192 ~~~a~~~a~~la~~~p~a~~~~K 214 (265)
T PRK05674 192 EAQVEAWIANLLLNSPQALRASK 214 (265)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999887
No 33
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-44 Score=282.04 Aligned_cols=176 Identities=30% Similarity=0.448 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++++.++.|+++|+|||||. |+.||+|.|++++ .............+.+++..+.++||||||+|||+|+||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA 109 (249)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence 57899999999999999999999998 7899999999987 221111223344555677789999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|++++++++++|++++++||+++||||+++ +++.++
T Consensus 110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~ 187 (249)
T PRK05870 110 GLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAA 187 (249)
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (249)
T PRK05870 188 ALELAAGPAAAPRELVLATK 207 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 34
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.3e-44 Score=283.67 Aligned_cols=178 Identities=22% Similarity=0.463 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+ +++|||||.+ +++||+|.|++++.....+...+...++++++.+.++|||+||+|||+|+||
T Consensus 32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~Gg 110 (261)
T PRK11423 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGG 110 (261)
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEech
Confidence 5789999999999987 9999999963 5899999999887221112223445567788999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|+.++++++++++|++++++++++|++++++||+++||||+|+|+++++++
T Consensus 111 G~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 190 (261)
T PRK11423 111 AFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDF 190 (261)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++++|.+++.+|
T Consensus 191 a~~~a~~l~~~~~~a~~~~K 210 (261)
T PRK11423 191 TLQMAHHISEKAPLAIAVIK 210 (261)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999887
No 35
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-44 Score=282.82 Aligned_cols=177 Identities=28% Similarity=0.458 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cC---chhH-HHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MS---PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++ |+++++|||+|. |+.||+|.|++++. .. .... ..+...+..++..+.++|||+||+|||+
T Consensus 32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 5789999999999 999999999998 78999999999872 11 1111 1222234457888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+|+++
T Consensus 110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred eehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 190 l~~~a~~~a~~ia~~~~~a~~~~K 213 (262)
T PRK08140 190 LADEAQQLAAHLATQPTRGLALIK 213 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999887
No 36
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-44 Score=285.13 Aligned_cols=178 Identities=30% Similarity=0.421 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cC-------chhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.+++++++.|+++|+|||+|. +++||+|.|+.++. .. ..........+++++..+.++||||||+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 116 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999998761 11 11111233455677888999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccC-CcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
||+|+|||++|+++||+||++++++|++||+++|++| +.|.++++++++|..++++++++|++++|+||+++||||+++
T Consensus 117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv 196 (276)
T PRK05864 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQV 196 (276)
T ss_pred CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceee
Confidence 9999999999999999999999999999999999997 788899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 152 PAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++++.+++.+++++++++||.+++.+|
T Consensus 197 ~~~~l~~~a~~~a~~la~~~p~a~~~~K 224 (276)
T PRK05864 197 PDEQLLDTCYAIAARMAGFSRPGIELTK 224 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999877
No 37
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-44 Score=284.58 Aligned_cols=178 Identities=22% Similarity=0.376 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++++|||||. ++.||+|.|+.++ .. +......+.+...+++..+.++||||||+|||+
T Consensus 45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999999999999998 7899999999987 21 122233444555678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccC-CcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
|+|||++|+++||+||++++++|++||.++|++| ++|+++++++++|..++++++++|++++++||+++||||+|++++
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 9999999999999999999999999999999995 778899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (277)
T PRK08258 204 ELLAEAQALARRLAAGPTFAHGMTK 228 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999887
No 38
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=7.1e-45 Score=282.92 Aligned_cols=178 Identities=43% Similarity=0.724 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++|+.++.|+++++||++|. ++.||+|.|++++ ..+.+....+.+.++.++.++.++||||||+|||+|+|+
T Consensus 26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg 104 (245)
T PF00378_consen 26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG 104 (245)
T ss_dssp HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence 57899999999999999999999998 8999999999988 445566778888999999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++++++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|++++|+||+++||||+|++++++.++
T Consensus 105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 184 (245)
T PF00378_consen 105 GFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEE 184 (245)
T ss_dssp HHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHH
T ss_pred ccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++..|+.+++.+|
T Consensus 185 a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 185 ALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999876
No 39
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-44 Score=282.14 Aligned_cols=177 Identities=32% Similarity=0.557 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.+++++++.|+++++|||+|. ++.||+|.|++++ ...... ..+...+++++.++.++|||+||+|||+|+||
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV 110 (259)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence 57899999999999999999999998 6899999999987 222211 34456667888999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|...+++++++|++++++||+++||||++++++++.++
T Consensus 111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 190 (259)
T PRK06688 111 GVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAE 190 (259)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 191 a~~~a~~i~~~~~~a~~~~K 210 (259)
T PRK06688 191 ADAQAAKLAAGPASALRYTK 210 (259)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 40
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-44 Score=283.64 Aligned_cols=178 Identities=27% Similarity=0.483 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C--chhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.++++.++.|+++|+|||||.+++.||+|.|++++.. . ........ ....++..+.++||||||+|||+|+
T Consensus 41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence 678999999999999999999999984479999999987621 1 11111111 2335677889999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (273)
T PRK07396 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLE 199 (273)
T ss_pred hHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T PRK07396 200 KETVRWCREMLQNSPMALRCLK 221 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
No 41
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.4e-44 Score=280.43 Aligned_cols=176 Identities=26% Similarity=0.432 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|+.++.........+. . ++++..+.++|||+||+|||+|+|+|
T Consensus 33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG 109 (249)
T PRK07110 33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGKGTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGG 109 (249)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchhhhHh-h-HHHHHHHHcCCCCEEEEecCceechH
Confidence 57899999999999999999999998 789999999988721111111222 2 56788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|++++++++++|++++++||+++||||+|++++++.+++
T Consensus 110 ~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (249)
T PRK07110 110 LVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKA 189 (249)
T ss_pred HHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++|+.+++.+|
T Consensus 190 ~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 190 LELARSLAEKPRHSLVLLK 208 (249)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
No 42
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-44 Score=281.44 Aligned_cols=176 Identities=33% Similarity=0.471 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++++|||||.+++.||+|.|++++. ...... ....+..+. .+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~-~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGGLT-SRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence 67899999999999999999999998557999999998872 111111 011222333 34589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++++++++++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (259)
T PRK06494 109 GFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAA 188 (259)
T ss_pred HHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (259)
T PRK06494 189 AERWADDILACSPLSIRASK 208 (259)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999877
No 43
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-44 Score=281.33 Aligned_cols=177 Identities=26% Similarity=0.400 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++++|||||. ++.||+|.|+.++.. ...........+..+++.+.++||||||+|||+|
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999998 789999999998621 1111222334556788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||.++|++|++++++++ +++|..++++|+++|++++++||+++||||+|+|++++
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERL 190 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 99999999999999999999999999999999999888755 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~l~~~~~~a~~~~K 213 (262)
T PRK07468 191 DAAVEAEVTPYLSCAPGAVAAAK 213 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999998877
No 44
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-44 Score=285.60 Aligned_cols=178 Identities=28% Similarity=0.380 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--C-c--------------h-hHHHHHHHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--S-P--------------S-EIHFYVNTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~-~--------------~-~~~~~~~~~~~~~~~~~ 62 (179)
|+.+|.++|++++.|+++++|||||. ++.||+|.|++++.. . . . ....+.+.+..++..+.
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (296)
T PRK08260 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110 (296)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 799999999987621 0 0 0 11223334456788899
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+
T Consensus 111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~ 190 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCChHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030339 143 SLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 143 ~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 179 (179)
++||||+|++++++.+++.+++++++++ +|.+++.+|
T Consensus 191 ~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K 228 (296)
T PRK08260 191 DGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR 228 (296)
T ss_pred HCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999995 999998876
No 45
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.8e-44 Score=281.57 Aligned_cols=175 Identities=28% Similarity=0.447 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|+.++.. ..... .....+++..+.++|||+||+|||+|+|+
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 67899999999999999999999998 689999999987621 11111 11234567788999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||++++++++.++
T Consensus 114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (265)
T PLN02888 114 GFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKK 193 (265)
T ss_pred HHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.+|.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 194 AREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 46
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-44 Score=280.47 Aligned_cols=176 Identities=33% Similarity=0.479 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++++ .|+++++|||+|. ++.||+|.|++++ .. .......+...+++++..+.++||||||+|||+|+|
T Consensus 34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G 111 (260)
T PRK07659 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG 111 (260)
T ss_pred HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence 578999999999 5889999999998 7899999999987 22 223334555667788889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+++ ++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~ 190 (260)
T PRK07659 112 LGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190 (260)
T ss_pred HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 191 ~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07659 191 AAKQKISEWLQKPLKAMIETK 211 (260)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998877
No 47
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-44 Score=280.49 Aligned_cols=177 Identities=32% Similarity=0.539 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCch-hHH-H-H-HHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPS-EIH-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~-~~~-~-~-~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++.|+++|+|||||. |+.||+|.|++++ ..... ... . + ...+..+ .++.++||||||+|||+
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDAL-LKGRRLTKPLIAAVEGP 110 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHHH-HHHhcCCCCEEEEECCe
Confidence 68899999999999999999999998 7899999999987 22111 111 1 1 1222223 34789999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|+|+++
T Consensus 111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred EeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~~~~~~~~a~~~~K 214 (263)
T PRK07799 191 ALDKALELAELINANGPLAVQAIL 214 (263)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999998876
No 48
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-44 Score=280.71 Aligned_cols=178 Identities=26% Similarity=0.462 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHhhcCC-CceEEEEEeCCCCccccccCcccccc-C--c----hhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKVLQM-S--P----SEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.+|.++++.++.|+ ++++|||||. ++.||+|.|++++.. . . .....+...+..++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK05981 32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6889999999999876 4999999998 689999999998721 1 1 1123344456778889999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|+..+++++++|++++++||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK05981 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190 (266)
T ss_pred CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK05981 191 DAELMAEAMKLAHELANGPTVALGLIR 217 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999998876
No 49
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-44 Score=278.41 Aligned_cols=175 Identities=31% Similarity=0.482 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++++|||||. |+.||+|.|++++...... ......+..++ ...+||||||+|||+|+|||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERP-SIPGRGFGGLT--ERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccch-hhhHHHHHHHH--HhcCCCCEEEEECCEEehHH
Confidence 68899999999999999999999998 7899999999987211110 11111222222 14799999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||++|++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|++++++.+++
T Consensus 107 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 186 (254)
T PRK08252 107 FELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAA 186 (254)
T ss_pred HHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 187 ~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 187 LELAERIAANGPLAVAASK 205 (254)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999876
No 50
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-44 Score=277.36 Aligned_cols=175 Identities=27% Similarity=0.409 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |++||+|.|+.++.. . ..........+.+++..+.++|||+||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 107 (249)
T PRK07938 29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG 107 (249)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence 67899999999999999999999998 799999999988721 1 12222233445667888999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++ ++++++++++|+.++++++++|++++++||+++||||+++|++++++
T Consensus 108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 184 (249)
T PRK07938 108 GGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDE 184 (249)
T ss_pred hHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHH
Confidence 999999999999999999999999999986 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 185 ~a~~~a~~la~~~~~a~~~~K 205 (249)
T PRK07938 185 AALEVARKIAAKDTRVIRAAK 205 (249)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998877
No 51
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-44 Score=278.58 Aligned_cols=176 Identities=38% Similarity=0.534 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++. ........ .........+.++|||+||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg 107 (254)
T PRK08259 31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG 107 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence 67899999999999999999999998 78999999999872 11111111 0111122234589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|..+++++|++++|+.++++++++|++++++||+++||||+|+|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 187 (254)
T PRK08259 108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAA 187 (254)
T ss_pred HHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (254)
T PRK08259 188 AEELAAELAAFPQTCLRADR 207 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 52
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1e-43 Score=280.73 Aligned_cols=179 Identities=25% Similarity=0.355 Sum_probs=160.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCccccccCccccc-cC--chhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKVLQ-MS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||.+ +++||+|.|+.++. .. .+....+......++.++.++||||||+|||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 678999999999999999999999984 27999999998862 11 111223333345577889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccc-cCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
+|+|++|+++||+||++++++|++||+++|+ +|+.++++++++++|..++++++++|++++++||+++||||+|+++++
T Consensus 119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 9999999999999999999999999999999 598889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 199 l~~~a~~~a~~l~~~~~~a~~~~K 222 (278)
T PLN03214 199 LMEAAASAMERALKLPSAARAATK 222 (278)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999887
No 53
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.6e-43 Score=284.35 Aligned_cols=179 Identities=27% Similarity=0.452 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHH-HHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++.++.|+++++|||+|.++++||+|.|+.++.. .......... ...+++..+.++||||||+|||+|+|
T Consensus 95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G 174 (327)
T PLN02921 95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG 174 (327)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence 688999999999999999999999994489999999987621 1110111111 12346778899999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||.++|++|.+++++++++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~ 254 (327)
T PLN02921 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEG 254 (327)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 255 ~a~~~a~~la~~~p~al~~~K 275 (327)
T PLN02921 255 ETVKWCREILRNSPTAIRVLK 275 (327)
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999887
No 54
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-43 Score=276.77 Aligned_cols=175 Identities=32% Similarity=0.565 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||+|. |+.||+|.|++++. . .......+...+.+++.++.++|||+||+|||+|+
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 67899999999999999999999998 79999999999872 1 12223334455667888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++ ++++++++++|+.++++++++|++++++||+++||||++++++++.
T Consensus 110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~ 186 (257)
T PRK06495 110 GAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELM 186 (257)
T ss_pred hhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999997 3567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 187 ~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 187 PEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
No 55
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.3e-43 Score=276.21 Aligned_cols=177 Identities=41% Similarity=0.666 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|+..+.. .......+....+.++..+.++||||||+|||+|+|
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (257)
T COG1024 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG 111 (257)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence 67899999999999999999999999 599999999998732 222222566667779999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC-ChHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-~~~~ 157 (179)
||++|+++||+||++++++|++||+++|++|++|+++++++.+|...+++++++|++++++||+++|||++++++ +++.
T Consensus 112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~ 191 (257)
T COG1024 112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191 (257)
T ss_pred chhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHH
Confidence 999999999999999999999999999999987999999999999999999999999999999999999999985 7999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+.+++++++. +|.++..+|
T Consensus 192 ~~a~~~a~~~a~-~~~a~~~~k 212 (257)
T COG1024 192 ERALELARRLAA-PPLALAATK 212 (257)
T ss_pred HHHHHHHHHHcc-CHHHHHHHH
Confidence 999999999998 888887765
No 56
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-43 Score=278.15 Aligned_cols=178 Identities=30% Similarity=0.505 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhH------HHH----HHHHHHHHHHHhcCCCcEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEI------HFY----VNTLRSTFSFLEALPIPTI 69 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~i 69 (179)
|+++|.++++.++.|+++++|||+|. |+.||+|.|++++ ....... ..+ ...+++++..+.++|||||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (272)
T PRK06210 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI 112 (272)
T ss_pred HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence 57899999999999999999999998 7899999999987 2111100 011 1123456778999999999
Q ss_pred EEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 70 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 70 a~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
|+|||+|+|||++|+++||++|++++++|++||+++|++|++++++++++++|++++++++++|++++|+||+++||||+
T Consensus 113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~ 192 (272)
T PRK06210 113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNR 192 (272)
T ss_pred EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030339 150 YVPAGQAQLKALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 179 (179)
+++++++.+++.++++++++. +|.++..+|
T Consensus 193 vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 193 VVPPDELMERTLAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999985 999998876
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.5e-43 Score=273.48 Aligned_cols=173 Identities=26% Similarity=0.409 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.||++|+|||||. |++||+|.|+.++.. .........+.+++..+.++||||||+|||+|+|+|
T Consensus 28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~--~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 104 (251)
T TIGR03189 28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP--DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGG 104 (251)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc--hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHH
Confidence 67899999999999999999999998 789999999987521 122233445567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++ +++++++++|+..+++++++|++++++||+++||||+|+++.+ +++
T Consensus 105 ~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a 181 (251)
T TIGR03189 105 LEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAA 181 (251)
T ss_pred HHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHH
Confidence 9999999999999999999999999999874 5779999999999999999999999999999999999997543 466
Q ss_pred HHH-HHHHhccCHHHHHhhC
Q 030339 161 LEI-AQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~-a~~~~~~~~~a~~~~K 179 (179)
.++ +++++++||.+++.+|
T Consensus 182 ~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 182 LAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 666 7999999999998876
No 58
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-43 Score=273.46 Aligned_cols=176 Identities=29% Similarity=0.476 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCch---hHHH----HHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPS---EIHF----YVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~---~~~~----~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.++++.++.|+++++|||+|. |+.||+|.|++++. .... .... ....+..++..+.++||||||+|
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav 109 (262)
T PRK07509 31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109 (262)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999999872 1111 1111 11233456677889999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|.+++++++++|++++++||+++||||++++
T Consensus 110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.++..+|
T Consensus 190 --~~~~~a~~~a~~l~~~~~~~~~~~K 214 (262)
T PRK07509 190 --DPLAAALALAREIAQRSPDAIAAAK 214 (262)
T ss_pred --hHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4678999999999999999998876
No 59
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-43 Score=268.78 Aligned_cols=176 Identities=20% Similarity=0.269 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++ +++++||++|. +++||+|.|++++.........+...+.+++.++.++|||+||+|||+|+|+|
T Consensus 30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG 106 (229)
T PRK06213 30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKG 106 (229)
T ss_pred HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHH
Confidence 5789999999988 56799999998 79999999999873223334455566778889999999999999999999999
Q ss_pred HHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 LEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
++|+++||+||++++ ++|++||+++|++|+.++..++++++|...+++++++|++++++||+++||||+|++++++.++
T Consensus 107 ~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (229)
T PRK06213 107 AFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLAR 186 (229)
T ss_pred HHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHH
Confidence 999999999999999 9999999999998887788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.|+.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (229)
T PRK06213 187 AQAAARELAGLNMGAHAATK 206 (229)
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999887
No 60
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-42 Score=274.55 Aligned_cols=170 Identities=26% Similarity=0.444 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCccccccCcccccc---Cch--hHHHHHHHHHHHHHHHh---cCCCc
Q 030339 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKVLQM---SPS--EIHFYVNTLRSTFSFLE---ALPIP 67 (179)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~~~---~~~--~~~~~~~~~~~~~~~~~---~~~kp 67 (179)
|+.+|.+++++++. |+++++|||||.+++.||+|.|+.++.. ..+ ....+...+...+.++. .+|||
T Consensus 44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP 123 (287)
T PRK08788 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI 123 (287)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 67899999999998 8999999999986789999999988621 111 11122222233333333 79999
Q ss_pred EEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 68 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 68 ~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
|||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++|||
T Consensus 124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV 203 (287)
T PRK08788 124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLV 203 (287)
T ss_pred EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHhcc
Q 030339 148 NYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 148 ~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
|+++|++++.+++.+++++++++
T Consensus 204 ~~vv~~~el~~~a~~~a~~ia~~ 226 (287)
T PRK08788 204 DVLVEDGQGEAAVRTFIRKSKRK 226 (287)
T ss_pred cEecCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976
No 61
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=4.3e-42 Score=274.33 Aligned_cols=179 Identities=28% Similarity=0.450 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCC------CccccccCcccccc--------Cc-h--hHHHHH-HHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKVLQM--------SP-S--EIHFYV-NTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~D~~~~~~--------~~-~--~~~~~~-~~~~~~~~~~~ 62 (179)
|+.+|.+++++++.|+++++|||||.|+ +.||+|.|+.++.. .. . ...... ....++.+.+.
T Consensus 53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (302)
T PRK08321 53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR 132 (302)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999842 69999999986510 00 0 000110 11234667788
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEc-CCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~-~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|..++++++++|++++|+||
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA 212 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEA 212 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 142 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 142 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++||||++++++++.+++.++++++++.+|.+++++|
T Consensus 213 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 213 HDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred HHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999886
No 62
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-42 Score=266.09 Aligned_cols=169 Identities=28% Similarity=0.451 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.+ ++|+|||||. |+.||+|.|+++.. ....+...+.++++++.++|||+||+|||+|+|+|
T Consensus 28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~----~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDV----YADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAG 101 (243)
T ss_pred HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccch----hHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccH
Confidence 578999999999865 9999999998 78999999997531 12233445567888899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||++|++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+|++ +. ++
T Consensus 102 ~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~~-~a 177 (243)
T PRK07854 102 LQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---LA-DA 177 (243)
T ss_pred HHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---HH-HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 33 89
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 178 ~~~a~~l~~~~~~a~~~~K 196 (243)
T PRK07854 178 QAWAAEIAGLAPLALQHAK 196 (243)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
No 63
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.3e-42 Score=279.78 Aligned_cols=178 Identities=26% Similarity=0.515 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC--c-hh-HHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS--P-SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~--~-~~-~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.||++|+|||||.+++.||+|.|+.++ ... . .. ...+.....+++.++.++|||+||+|||+
T Consensus 31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 6789999999999999999999999955899999999887 211 1 11 11333444567888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++++++.| ..+++++++|++++|+||+++||||+++++++
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999866 78999999999999999999999999999888
Q ss_pred HHHH--------------------------------------------------------------HHHHHHHHhccCHH
Q 030339 156 AQLK--------------------------------------------------------------ALEIAQEINQKVQS 173 (179)
Q Consensus 156 ~~~~--------------------------------------------------------------a~~~a~~~~~~~~~ 173 (179)
+.++ +.+++++++++||.
T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~ 269 (342)
T PRK05617 190 LPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPT 269 (342)
T ss_pred HHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcH
Confidence 8776 88999999999999
Q ss_pred HHHhhC
Q 030339 174 VFRILL 179 (179)
Q Consensus 174 a~~~~K 179 (179)
+++.+|
T Consensus 270 a~~~~k 275 (342)
T PRK05617 270 SLKVTL 275 (342)
T ss_pred HHHHHH
Confidence 999876
No 64
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-42 Score=272.09 Aligned_cols=176 Identities=30% Similarity=0.443 Sum_probs=155.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc--cC------------------ch---hHHHHHHHHHHH
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MS------------------PS---EIHFYVNTLRST 57 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~--~~------------------~~---~~~~~~~~~~~~ 57 (179)
|+++|.+++++++.|+++++|||||. +++||+|.|+.++. .. .. ........+.++
T Consensus 32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (288)
T PRK08290 32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM 110 (288)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 67899999999999999999999998 78999999998761 11 00 011112344567
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcC
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 137 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 137 (179)
+..+.++|||+||+|||+|+|+|++|+++||+||++++++|++||.++|++ + ..++++++++|+.++++++++|++++
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~-~~~~~l~~~iG~~~A~~llltG~~i~ 188 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-G-VEYFAHPWELGPRKAKELLFTGDRLT 188 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-c-chHHHHHHHhhHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999999999999999999999999984 3 34667888999999999999999999
Q ss_pred HHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 138 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 138 a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|+||+++||||++++++++.+++.++++++++.|+.+++.+|
T Consensus 189 A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 230 (288)
T PRK08290 189 ADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230 (288)
T ss_pred HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876
No 65
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-42 Score=266.59 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||+|. ++.||+|.|++++... ....+.+.+..++..+.++||||||+|||+|+|+|
T Consensus 28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~--~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 104 (248)
T PRK06072 28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPD--FAIDLRETFYPIIREIRFSDKIYISAINGVTAGAC 104 (248)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhh--hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHH
Confidence 67899999999999999999999998 7899999999876211 11223344567788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|+.++++++++++|. ++++++++|++++|+||+++||||++ +++.+++
T Consensus 105 ~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a 180 (248)
T PRK06072 105 IGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDA 180 (248)
T ss_pred HHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHH
Confidence 9999999999999999999999999999999999999999996 89999999999999999999999964 4678899
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 181 ~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 181 EEMANRISNGPFQSYIAAK 199 (248)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
No 66
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-42 Score=268.90 Aligned_cols=175 Identities=23% Similarity=0.381 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc--Cch-hHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM--SPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++++|||||. |+.||+|.|++++ .. ++. ....+...+.++++++.++||||||+|||+|
T Consensus 34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 67899999999999999999999998 7899999999987 21 221 1223455667788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++++++||+||++++++|++||.++|++|+++++++++++. ..++++++++|++++++||+++||||++++ ++
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l 189 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DV 189 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HH
Confidence 999999999999999999999999999999999999999999864 568999999999999999999999999974 58
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.|+.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (260)
T PRK07827 190 DAAVAALLADLRRGSPQGLAESK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999999999887
No 67
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-41 Score=272.18 Aligned_cols=175 Identities=25% Similarity=0.369 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-----h------------------h--HHHHHHHH
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-----S------------------E--IHFYVNTL 54 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-----~------------------~--~~~~~~~~ 54 (179)
|+.+|.+++++++.|+++++|||+|. |++||+|.|+.++ .... . . .......+
T Consensus 38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08272 38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116 (302)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence 67899999999999999999999998 7999999999887 1110 0 0 01224455
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCC
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 134 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 134 (179)
.+++..+.++|||+||+|||+|+|||++|+++||++|++++++|++||+++|.+|+. ..+++++|.+++++++++|+
T Consensus 117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~ 193 (302)
T PRK08272 117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGD 193 (302)
T ss_pred HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCC
Confidence 677888999999999999999999999999999999999999999999997555543 35677899999999999999
Q ss_pred CcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 135 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 135 ~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++|+||+++||||+++|++++.+++.+++++++++||.++..+|
T Consensus 194 ~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 194 CITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred ccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999887
No 68
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.8e-41 Score=271.63 Aligned_cols=178 Identities=24% Similarity=0.328 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++.. .+.....+.+.+++++..+..+||||||+|||+|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 688999999999999999999999994479999999998721 2233344555567788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|+.++
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ------------HHHHHHHHHHHhccCHH--HHHhh
Q 030339 157 ------------QLKALEIAQEINQKVQS--VFRIL 178 (179)
Q Consensus 157 ------------~~~a~~~a~~~~~~~~~--a~~~~ 178 (179)
.+.+.++++.+..+++. ++++.
T Consensus 216 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T TIGR03200 216 DGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG 251 (360)
T ss_pred CcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence 67778888888877766 55543
No 69
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.7e-41 Score=278.09 Aligned_cols=176 Identities=26% Similarity=0.476 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC----chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.|+++++|||+|. |++||+|.|+.++ ... ......+....+.+...|.++|||+||+|||+
T Consensus 65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence 68899999999999999999999999 6899999999987 211 11123344444456778999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .+++|++||++++|+||+++||||+++|+++
T Consensus 144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 999999999999999999999999999999999999999999999995 8999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+ +++.+++++++..+|.++..+|
T Consensus 223 l-~~~~~~~~~i~~~~p~av~~~k 245 (401)
T PLN02157 223 I-PVMEEQLKKLLTDDPSVVESCL 245 (401)
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHH
Confidence 8 6788999999999998887765
No 70
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5.2e-41 Score=274.96 Aligned_cols=156 Identities=22% Similarity=0.408 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC--chhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.++++.++.|++||+|||+|. |++||+|.|++++ ... .............++..+.++|||+||+|||+|+
T Consensus 39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 68899999999999999999999998 6899999999987 211 1222233344445677899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||+.|+++||+||++++++|++||.++|++|++|++++++++.|. .+++|+++|++++++||+++||||++++++++.
T Consensus 118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (379)
T PLN02874 118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLP 196 (379)
T ss_pred ecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHH
Confidence 9999999999999999999999999999999999999999998885 899999999999999999999999999987775
Q ss_pred H
Q 030339 158 L 158 (179)
Q Consensus 158 ~ 158 (179)
+
T Consensus 197 ~ 197 (379)
T PLN02874 197 E 197 (379)
T ss_pred H
Confidence 5
No 71
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=7.4e-41 Score=259.22 Aligned_cols=177 Identities=23% Similarity=0.408 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHhhcCCCce-EEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|++++ +||++|. ++.||+|.|++++. . .......+...+.+++.++.++||||||+|||+|
T Consensus 27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 5789999999999999975 6667777 78999999998762 1 1222233445567788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcC-CceeecccccccccCCcchhhhhhcccCHHHH-HHHHhcCCCcCHHHHHhcCccccccCC-
Q 030339 77 LGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVA-KDIIFTGRKVSGKDAMSLGLVNYYVPA- 153 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~-~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~~a~~~Glv~~v~~~- 153 (179)
+|||++|+++||+||+++ +++|++||.++|+++++++++++++++|..++ ++++++|++++++||+++||||+++++
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 999999999999999984 57999999999997444457799999999999 699999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHhccC--HHHHHhh
Q 030339 154 GQAQLKALEIAQEINQKV--QSVFRIL 178 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~--~~a~~~~ 178 (179)
+++.+++.++|+++++++ +.++..+
T Consensus 186 ~~l~~~a~~~A~~ia~~~~~~~~~~~~ 212 (239)
T PLN02267 186 EETVEAAVRLGEELAARKWNGEVYASI 212 (239)
T ss_pred HHHHHHHHHHHHHHhhccCcccHHHHH
Confidence 689999999999999874 3454444
No 72
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7e-41 Score=261.82 Aligned_cols=173 Identities=22% Similarity=0.316 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-Cchh-HHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++ +++++|||+|. |++||+|.|++++ .. .... .......+..++.++.++||||||+|||+|+
T Consensus 32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 108 (255)
T PRK07112 32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN 108 (255)
T ss_pred HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence 5789999999998 46999999998 7899999999987 21 1111 1112334456888899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|+++ +.++++++|..++++++++|++++++||+++||||+++++++.
T Consensus 109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~- 186 (255)
T PRK07112 109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT- 186 (255)
T ss_pred cchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH-
Confidence 99999999999999999999999999999999865 4678999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+.++++++++.+|.+++.+|
T Consensus 187 -~~~~~a~~l~~~~p~a~~~~K 207 (255)
T PRK07112 187 -LLRKHLLRLRCLNKAAVARYK 207 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHH
Confidence 578899999999999999877
No 73
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-41 Score=266.63 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccc-ccc-------Cc--hhHHHH---H-H--HHHHHHHHHhcC
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQM-------SP--SEIHFY---V-N--TLRSTFSFLEAL 64 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~-~~~-------~~--~~~~~~---~-~--~~~~~~~~~~~~ 64 (179)
|+.+|.++|++++.|+++|+|||||. |++||+|.|+++ +.. .. .....+ . . .....+..+.++
T Consensus 33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (298)
T PRK12478 33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA 111 (298)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence 67899999999999999999999998 799999999985 210 00 011111 0 1 112356678899
Q ss_pred CCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccc-cccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHh
Q 030339 65 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 65 ~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~-G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
|||+||+|||+|+|||++|+++||+||++++++|++||+++ |+++. .++ .+++|..++++++++|++++|+||++
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~ 187 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAE 187 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999996 88863 233 24599999999999999999999999
Q ss_pred cCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 144 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 144 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+||||+|++++++.+++.+++++++..||.+++.+|
T Consensus 188 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (298)
T PRK12478 188 AELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223 (298)
T ss_pred cCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999887
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6.1e-41 Score=247.42 Aligned_cols=179 Identities=53% Similarity=0.825 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++++++..|+.+|+|+|++..++.||+|.|+++- .+++.+...++..++.++..+.++|.|+||+++|.+.||
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 6789999999999999999999999989999999999998 788999999999999999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC----h
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG----Q 155 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~----~ 155 (179)
|++++++||+|+++++++++++|.+++++|+.|++++|+|.+|.+.++++++|++.+++.||..+||||+|++.. .
T Consensus 139 GLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegda 218 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDA 218 (291)
T ss_pred chhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999754 5
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
..+.++++|+++.-+-|.++++.|
T Consensus 219 a~~kal~lA~eilp~gPiavr~aK 242 (291)
T KOG1679|consen 219 AYQKALELAREILPQGPIAVRLAK 242 (291)
T ss_pred HHHHHHHHHHHhccCCchhhhHHH
Confidence 667799999999999999999876
No 75
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=4.2e-40 Score=268.96 Aligned_cols=175 Identities=21% Similarity=0.421 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c-Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++|++++.|+++++|||+|. |++||+|.|+.++. . .. .....+......+...+.++|||+||++||+
T Consensus 37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence 68899999999999999999999999 68999999999872 1 11 1122223333345678899999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|+.|++++|+++.|. .+++|+++|+++++.||+++||+|+++++++
T Consensus 116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 999999999999999999999999999999999999999999998886 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhh
Q 030339 156 AQLKALEIAQEINQKVQSVFRIL 178 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~ 178 (179)
+.+.+.+++ +++..+|.++...
T Consensus 195 l~~~~~~la-~~~~~~p~~~~~~ 216 (381)
T PLN02988 195 LTALEADLC-RIGSNDPTFASTI 216 (381)
T ss_pred HHHHHHHHH-HhhccCHHHHHHH
Confidence 998888888 7777777766544
No 76
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=7.6e-40 Score=277.55 Aligned_cols=178 Identities=20% Similarity=0.189 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhc-CCCceEEEEEeCCC-CccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEc-ccc
Q 030339 1 MLRGLKHAFETISE-DSSANVVMIRSSVP-KVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~-~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~-G~a 76 (179)
|+.+|.+++++++. |+++|+|||||. | +.||+|.|++.... +..........++.++.++.++|||+||+|| |+|
T Consensus 303 ~~~eL~~al~~~~~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a 381 (550)
T PRK08184 303 MARELDDAILHLRTNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSC 381 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCce
Confidence 67899999999986 799999999998 5 59999999864321 1111122334455678899999999999997 999
Q ss_pred cchh-HHHHhhcCEEEEc-------CCceeecccccccccCCcchhhhhhcc-cCHHHHHHH--HhcCCCcCHHHHHhcC
Q 030339 77 LGGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDI--IFTGRKVSGKDAMSLG 145 (179)
Q Consensus 77 ~g~G-~~l~~~~D~~va~-------~~a~~~~p~~~~G~~p~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~~a~~~G 145 (179)
+||| ++|+++||++|++ ++++|++||+++|++|+++++++|+++ +|..+++++ +++|++++|+||+++|
T Consensus 382 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~G 461 (550)
T PRK08184 382 FAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELG 461 (550)
T ss_pred ehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcC
Confidence 9999 9999999999999 999999999999999999999999988 699999987 5899999999999999
Q ss_pred ccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 146 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 146 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|||+++|++++++++.+++++++++||.+++.+|
T Consensus 462 Lv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 462 LVTAAPDDIDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred CcccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999887
No 77
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.4e-39 Score=275.27 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCc-cccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEE-cccc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v-~G~a 76 (179)
|+.+|.+++.+++ +|+++|+|||||. |+. ||+|.|+..... +...........++++.++.++|||+||+| ||+|
T Consensus 299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 6789999999998 4599999999998 666 999999974321 111122333344567889999999999999 8999
Q ss_pred cchh-HHHHhhcCEEEE-------cCCceeecccccccccCCcchhhhhhccc-CHHHH--HHHHhcCCCcCHHHHHhcC
Q 030339 77 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGAGGTQRLPRLV-GKSVA--KDIIFTGRKVSGKDAMSLG 145 (179)
Q Consensus 77 ~g~G-~~l~~~~D~~va-------~~~a~~~~p~~~~G~~p~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~~a~~~G 145 (179)
+||| ++|+++||++|+ +++++|++||+++|++|+++++++|++++ |..++ ++++++|++++|+||+++|
T Consensus 378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~G 457 (546)
T TIGR03222 378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLG 457 (546)
T ss_pred eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcC
Confidence 9999 999999999999 89999999999999999999999999998 99888 5599999999999999999
Q ss_pred ccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 146 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 146 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
||++|++++++.+++.+++++++++||.+++.+|
T Consensus 458 lv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 458 LVTAAPDDIDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred CcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999887
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.4e-39 Score=283.30 Aligned_cols=169 Identities=37% Similarity=0.589 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|++++.. .......+...++.++.++.++|||+||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 67899999999999999999999998 689999999988721 1222334555667788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||++++++++
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l 193 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKL 193 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030339 157 QLKALEIAQEINQK 170 (179)
Q Consensus 157 ~~~a~~~a~~~~~~ 170 (179)
.+++.+++++++.+
T Consensus 194 ~~~a~~~a~~la~~ 207 (715)
T PRK11730 194 QEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999975
No 79
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.8e-39 Score=261.85 Aligned_cols=172 Identities=23% Similarity=0.443 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++.+ .. ..+....+....+.+.+.+.++|||+||++||+
T Consensus 70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 78999999999999999999999998 6999999999987 21 113344556667778888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||+.|+++||+||++++++|++||.++|++|++|++++++++.|. .++++++||++++++||+++||+|+++++++
T Consensus 149 amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 999999999999999999999999999999999999999999999887 5899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030339 156 AQLKALEIAQEINQKVQSVF 175 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~ 175 (179)
+ +++.+.+.++...++.++
T Consensus 228 l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 228 L-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred H-HHHHHHHHhhccCCHHHH
Confidence 7 667777777766555443
No 80
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=247.22 Aligned_cols=178 Identities=29% Similarity=0.565 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc------cC-------chhHHHHHHHHHHHHHHHhcCCCc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ------MS-------PSEIHFYVNTLRSTFSFLEALPIP 67 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~kp 67 (179)
|+.|+.++++.++.||++|+|||+|+ |+.||+|+|++.+. .. .....+.+..+++.+..|.+||||
T Consensus 50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP 128 (292)
T KOG1681|consen 50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP 128 (292)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence 57899999999999999999999999 89999999988761 11 134667788889999999999999
Q ss_pred EEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccC-HHHHHHHHhcCCCcCHHHHHhcCc
Q 030339 68 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGL 146 (179)
Q Consensus 68 ~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~~a~~~Gl 146 (179)
+|++|+|+|+|+|..|..+||+|++++|+.|+.-|+.+|+..+.|-..+||+.+| ++.++++.+|++.++|.||++.||
T Consensus 129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GL 208 (292)
T KOG1681|consen 129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGL 208 (292)
T ss_pred HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cccccC-CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 147 VNYYVP-AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 147 v~~v~~-~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|++|+| .+++...+..+|+.|+.++|.+...+|
T Consensus 209 vSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 209 VSRVFPDKEELLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred chhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence 999998 578999999999999999998877665
No 81
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.1e-38 Score=239.99 Aligned_cols=165 Identities=47% Similarity=0.813 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCch--hHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPS--EIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.++++.++.|+++++|||||. ++.||+|.|+.++ ....+ ....+.+.+++++.++..+|||+|+++||+|.
T Consensus 27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 57899999999999999999999998 8999999999988 22222 25678888899999999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|+|+.++++||+||++++++|++||.++|++|+.+.++++++++|.+.+++++++|++++++||+++|||+++++.+++.
T Consensus 106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred cHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHH
Q 030339 158 LKALEIAQE 166 (179)
Q Consensus 158 ~~a~~~a~~ 166 (179)
+++.+++++
T Consensus 186 ~~a~~~a~~ 194 (195)
T cd06558 186 AAALELARR 194 (195)
T ss_pred HHHHHHHhh
Confidence 999988876
No 82
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.2e-38 Score=278.88 Aligned_cols=166 Identities=42% Similarity=0.727 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++ .. ..+....+....++++.++.++|||+||+|||+|+|
T Consensus 35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 114 (708)
T PRK11154 35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG 114 (708)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 5789999999999999999999999766899999999987 22 122233444556678899999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCc--eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 79 GGLEMALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a--~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
||++|+++||+||+++++ +|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||++++++++
T Consensus 115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 999999999999999974 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030339 157 QLKALEIAQE 166 (179)
Q Consensus 157 ~~~a~~~a~~ 166 (179)
.+++.++|++
T Consensus 195 ~~~a~~~A~~ 204 (708)
T PRK11154 195 LEVAVELAKK 204 (708)
T ss_pred HHHHHHHHHh
Confidence 9999999988
No 83
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=4.7e-38 Score=274.63 Aligned_cols=176 Identities=40% Similarity=0.657 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++|++++.|+++|+|||++..+++||+|.|++++.. .......+...++.++..+.++||||||+|||+|+|
T Consensus 30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G 109 (699)
T TIGR02440 30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG 109 (699)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 678999999999999999999975433789999999998721 223333445566778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCC--ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 79 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~--a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
||++|+++||+||++++ ++|++||+++|++|++|+++++++++|...+++++++|+++++++|+++||||++++++++
T Consensus 110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 99999999999999986 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------------HHhccCHHHHH
Q 030339 157 QLKALEIAQ-------------EINQKVQSVFR 176 (179)
Q Consensus 157 ~~~a~~~a~-------------~~~~~~~~a~~ 176 (179)
.+++.++|+ ++++.+|.+.+
T Consensus 190 ~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 190 LDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred HHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 999999998 56666666533
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=6.7e-38 Score=273.87 Aligned_cols=168 Identities=38% Similarity=0.604 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++++|||+|. ++.||+|.|++++.. +......+....++++.++.++|||+||+|||+|
T Consensus 35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 789999999998721 2223334555667889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|+++++++++|...+++++++|+++++++|+++||||++++++++
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l 193 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKL 193 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030339 157 QLKALEIAQEINQ 169 (179)
Q Consensus 157 ~~~a~~~a~~~~~ 169 (179)
.+++.++++++..
T Consensus 194 ~~~a~~~a~~~~~ 206 (714)
T TIGR02437 194 GAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988554
No 85
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.4e-37 Score=263.05 Aligned_cols=173 Identities=27% Similarity=0.403 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCccccccCcccccc-Cch-h--HHHHH-HHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVLQM-SPS-E--IHFYV-NTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~-~--~~~~~-~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.++|++++ .|+++|+|||||.++++||+|.|++++.. ... . ..... +....+.+.+.++||||||+|||
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG 128 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG 128 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 79999999999975789999999998721 111 1 11111 11233455678999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCC--ceeeccccc-ccccCCcchhhhhh--cccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 75 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~--a~~~~p~~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++.++. +.+|..++++++++|++++++||+++||||+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~ 208 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDE 208 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceE
Confidence 999999999999999999987 799999997 99999999998887 6899999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCHH
Q 030339 150 YVPAGQAQLKALEIAQEINQKVQS 173 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~~~~ 173 (179)
++|++++.+++.++++++++.||.
T Consensus 209 vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 209 VVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998763
No 86
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-37 Score=232.55 Aligned_cols=178 Identities=20% Similarity=0.376 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc----ccCc-h---hHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSP-S---EIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~----~~~~-~---~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.++..+|+++..|+++..++++|. |+.||+|.|+..+ +.+. + ....+...+...+..+.++|||+||.|
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 56789999999999999988888888 8999999999988 1111 1 222333444457889999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|.|..+.-.||+++++|+++|..|+.++|+.|+++.++++|+++|...|.++++.|++++|+||.+.|||+++++
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++...++++++.+|.+++..|
T Consensus 195 ~~tf~~~v~~~ikq~s~l~p~sl~~~K 221 (266)
T KOG0016|consen 195 AETFNEEVLKKIKQYSKLSPESLLGMK 221 (266)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999998776
No 87
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.5e-37 Score=260.66 Aligned_cols=173 Identities=28% Similarity=0.405 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCccccccCcccccc-CchhH---HHHHHH-HHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEI---HFYVNT-LRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++ .|+++++|||||.+++.||+|.|+..+.. ..... ...... ...+...+.++|||+||+|||
T Consensus 53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG 132 (550)
T PRK08184 53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG 132 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999999999 78999999999986689999999998721 11111 111111 122455678899999999999
Q ss_pred cccchhHHHHhhcCEEEEcCC--ceeeccccc-ccccCCcchhhhhh--cccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 75 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~--a~~~~p~~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
+|+|||++|+++||+||++++ ++|++||++ +|++|++++++++. +++|+.++++++++|++++++||+++||||+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~ 212 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDE 212 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccE
Confidence 999999999999999999987 899999997 99999999998888 6799999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCHH
Q 030339 150 YVPAGQAQLKALEIAQEINQKVQS 173 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~~~~ 173 (179)
+++++++.+++.+++++++.+||.
T Consensus 213 vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 213 VVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred eeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998874
No 88
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=7.3e-37 Score=267.95 Aligned_cols=168 Identities=35% Similarity=0.619 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHhhcCCCceEE-EEEeCCCCccccccCccccc--cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+| |++|. +++||+|.|++++. ........+....++++.++.++||||||+|||+|+
T Consensus 42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~ 120 (737)
T TIGR02441 42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL 120 (737)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 578999999999999999975 56887 78999999999883 223334455566778899999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCC--ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC--
Q 030339 78 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 153 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~--a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-- 153 (179)
|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+|+++
T Consensus 121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~ 200 (737)
T TIGR02441 121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLG 200 (737)
T ss_pred cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcc
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999999999986
Q ss_pred -----------ChHHHHHHHHHHHHhc
Q 030339 154 -----------GQAQLKALEIAQEINQ 169 (179)
Q Consensus 154 -----------~~~~~~a~~~a~~~~~ 169 (179)
+++.+.+..++++++.
T Consensus 201 ~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 201 PGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhhc
Confidence 4467777777777654
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-36 Score=223.20 Aligned_cols=176 Identities=28% Similarity=0.522 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC--CCCccccccCcccc-c----cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKVL-Q----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~D~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
+.|+.++|..+..|++|.+|+|||. |++.||+|.|-+.- . .+.+.... -...++-+.|+++|||+||.|+|
T Consensus 48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G 125 (282)
T COG0447 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG 125 (282)
T ss_pred HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence 5789999999999999999999975 78999999998654 1 01111111 11234455778999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+++|||-.|-+.||+.||+++++|+...++.|-+-++.++..|.+.+|+..|++..+.|+.++|+||+++|+||.|+|.+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++++..+|++++.+++|.++++.|
T Consensus 206 ~LE~e~v~W~~E~l~kSP~AlR~LK 230 (282)
T COG0447 206 DLEKETVQWAREMLAKSPTALRMLK 230 (282)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999987
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-32 Score=200.40 Aligned_cols=176 Identities=26% Similarity=0.424 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc--cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+.|..-..+.++|+|||+.. |+.||+|.|++++. ...+--.+.+....+++..|+++|.|+|+.|||++..
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA 138 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA 138 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence 78899999999889999999999998 89999999999993 2234445566677788999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
.|+.|...||++|++++++|..|..+.|++...-+. -+.|.+++..+.+|++||+|++++||+-.|||+++||.+|+..
T Consensus 139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~ 217 (287)
T KOG1682|consen 139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDK 217 (287)
T ss_pred ccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHH
Confidence 999999999999999999999999999998655443 5778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhh
Q 030339 159 KALEIAQEINQKVQSVFRIL 178 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~ 178 (179)
|+++++.+|...++..+..-
T Consensus 218 e~~~i~~~i~~~srav~slg 237 (287)
T KOG1682|consen 218 EIEEITNAIKAKSRAVISLG 237 (287)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 99999999999888877643
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=4.9e-30 Score=202.08 Aligned_cols=174 Identities=26% Similarity=0.495 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-----ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-----QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+..+.-.|..++.++.+++||+.|+++++||+|+|+... +........++.+.+.+...+.++.||.||.++|.
T Consensus 66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 6778888999999999999999999999999999998765 33445678888888899999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
.+|||..|++..-||||++++.|.+||..+|++|+.|++|++++.-| ....++.+||+++++.||+..||.++.|++++
T Consensus 146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~ 224 (401)
T KOG1684|consen 146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEK 224 (401)
T ss_pred eecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999777 78999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030339 156 AQLKALEIAQEINQKVQSVF 175 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~ 175 (179)
+-.-=.++.+.+...|...+
T Consensus 225 l~~Lee~L~~~l~~dp~~~I 244 (401)
T KOG1684|consen 225 LPSLEERLLKNLNDDPQSVI 244 (401)
T ss_pred hhHHHHHHhhhcCCCcHHHH
Confidence 64333344445555443443
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.91 E-value=5.3e-24 Score=158.14 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.+|.++++++++|+++++|||++ +|.|.|+.. ...+.+++..+.+++||+||+++|.|.|+|+
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~-----------~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~ 87 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTA-----------SEVIRAELAAARAAGKPVVASGGGNAASGGY 87 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHH-----------HHHHHHHHHHHHhCCCCEEEEECCchhHHHH
Confidence 578999999999999999999987 477877642 1345567778889999999999999999999
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcchhh--------hhhccc--CHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQ--------RLPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~--------~l~~~~--g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
.++++||++++++++.|+.+....+..+...... .+++.. .....++++..|.++++++|++.||||++.
T Consensus 88 ~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~ 167 (177)
T cd07014 88 WISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLG 167 (177)
T ss_pred HHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCC
Confidence 9999999999999999999987666433222222 333333 478889999999999999999999999999
Q ss_pred CCChHHHH
Q 030339 152 PAGQAQLK 159 (179)
Q Consensus 152 ~~~~~~~~ 159 (179)
+.+++.++
T Consensus 168 ~~~e~~~~ 175 (177)
T cd07014 168 SFDDAVAK 175 (177)
T ss_pred CHHHHHHH
Confidence 87666543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.89 E-value=2.2e-22 Score=150.64 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccch
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALGG 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g~ 79 (179)
..+.+.|+.+++++ ++.|+|.=+ |.|.++ .....++..+..+|||+|++++ |+|.|+
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v--------------~~~~~i~~~l~~~~kPvia~v~~~~G~Aasg 75 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLL--------------DSTREIVQAILASPVPVVVYVYPSGARAASA 75 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCH--------------HHHHHHHHHHHhCCCCEEEEEecCCCCchhH
Confidence 56788899998765 677887743 223443 2233556677889999999999 999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCc--------------chhhhhhcccCH--HHHHHHHhcCCCcCHHHHHh
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGA--------------GGTQRLPRLVGK--SVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~~a~~a~~ 143 (179)
|+.++++||+++++++++|+.+++..+..+.. .....+++..|. ..+++++++|+.++++||++
T Consensus 76 G~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~ 155 (187)
T cd07020 76 GTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALK 155 (187)
T ss_pred HHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHH
Confidence 99999999999999999999999985544432 234467777786 68999999999999999999
Q ss_pred cCccccccCCC-hHHHH
Q 030339 144 LGLVNYYVPAG-QAQLK 159 (179)
Q Consensus 144 ~Glv~~v~~~~-~~~~~ 159 (179)
+||||++++++ ++...
T Consensus 156 ~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 156 LGVIDLIAADLNELLKK 172 (187)
T ss_pred cCCcccccCCHHHHHHH
Confidence 99999999875 55544
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.81 E-value=3.8e-19 Score=135.48 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
++.+|.++|+.+.+||++++|||+ .||.|.|+..+ ..+.+.++.+..++||+||.++|.|.|+|
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~-----------~~~~~~l~~~~~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS-----------EVIRAELAAARAAGKPVVVSAGGAAASGG 85 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH-----------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence 367899999999999999999997 58999998542 23455677788899999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecc
Q 030339 81 LEMALACDLRICGEAALLGLP 101 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p 101 (179)
+.|+++||++++++++.++..
T Consensus 86 y~la~~aD~i~a~~~a~~gsi 106 (211)
T cd07019 86 YWISTPANYIVANPSTLTGSI 106 (211)
T ss_pred HHHHHhCCEEEEcCCCEEEEe
Confidence 999999999999999988743
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.76 E-value=3.7e-18 Score=146.89 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCC--CccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVP--KVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~--~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
+.+.+.|+.+..|+++++|||+-+++ ..|+ .+.+++.+.++...+||+|+.++|.|.+||
T Consensus 332 ~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~a------------------se~i~~~i~~~~~~gKPVva~~~g~aaSgg 393 (584)
T TIGR00705 332 DTVAALLRVARSDPDIKAVVLRINSPGGSVFA------------------SEIIRRELARAQARGKPVIVSMGAMAASGG 393 (584)
T ss_pred HHHHHHHHHHhhCCCceEEEEEecCCCCCHHH------------------HHHHHHHHHHHHhCCCcEEEEECCccccHH
Confidence 56788999999999999999997632 2233 144556667777889999999999999999
Q ss_pred HHHHhhcCEEEEcCCcee------eccc------ccccccCCcchhhhhhc----------------------------c
Q 030339 81 LEMALACDLRICGEAALL------GLPE------TGLAIIPGAGGTQRLPR----------------------------L 120 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~------~~p~------~~~G~~p~~~~~~~l~~----------------------------~ 120 (179)
+.++++||.++++|.+.+ +.+. .++|+.++...+..++. .
T Consensus 394 Y~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~ 473 (584)
T TIGR00705 394 YWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSV 473 (584)
T ss_pred HHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 4442 57888887666655543 3
Q ss_pred cCHHH-----HHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc-CHHH
Q 030339 121 VGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSV 174 (179)
Q Consensus 121 ~g~~~-----a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a 174 (179)
++..+ ..+.+..|+.++++||+++||||++. .+ +++.+.|++++.. ++..
T Consensus 474 Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~~ 529 (584)
T TIGR00705 474 VSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQWS 529 (584)
T ss_pred HHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCce
Confidence 44444 66778899999999999999999993 34 7888889999887 4433
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.75 E-value=2e-17 Score=120.88 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+.|+.++.|++++.|+|+.. |.|.|+. ....+...+..++||+|+.++|.|.++|
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~--------------~~~~i~~~l~~~~kpvva~~~g~~~s~g 72 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVD--------------AGMNIVDALQASRKPVIAYVGGQAASAG 72 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHH--------------HHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence 46889999999999999999999874 5566552 2344566777888999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCc--ch-----------hhhhh------cccCHHHHHHHHhcCCCcCHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGA--GG-----------TQRLP------RLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~--~~-----------~~~l~------~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
+.|+++||.+++.|++.|+++.+..+..... .. ...+. +.+......+++..+..++++||
T Consensus 73 ~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA 152 (161)
T cd00394 73 YYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEA 152 (161)
T ss_pred HHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHH
Confidence 9999999999999999999988865543221 00 01111 11234456778888999999999
Q ss_pred HhcCccccc
Q 030339 142 MSLGLVNYY 150 (179)
Q Consensus 142 ~~~Glv~~v 150 (179)
+++||||++
T Consensus 153 ~~~GLvD~i 161 (161)
T cd00394 153 LEYGLVDAL 161 (161)
T ss_pred HHcCCcCcC
Confidence 999999985
No 97
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.73 E-value=8.4e-17 Score=122.37 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+.|+.++.|+++++|+|++. |.|.|+.. ...+.+.++.+..++||+||+++|.|.|+|
T Consensus 18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~-----------~~~i~~~i~~~~~~~kpvia~v~g~~~s~g 81 (208)
T cd07023 18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVA-----------SEEIYREIRRLRKAKKPVVASMGDVAASGG 81 (208)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHH-----------HHHHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence 57889999999999999999999884 66777743 123455677788899999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecc
Q 030339 81 LEMALACDLRICGEAALLGLP 101 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p 101 (179)
+.++++||.+++++++.|+..
T Consensus 82 ~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 82 YYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHhhCCEEEECCCCeEEeC
Confidence 999999999999999988653
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.73 E-value=7.1e-17 Score=123.28 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++|+.+++|+++++|||+.. |.|.++.. .+.+.+.+..+.. +||+||+++|.|.|+|
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~-----------~~~l~~~l~~~~~-~KpViA~v~g~a~s~g 88 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG-----------VFELADAIRAARA-GKPIVAFVNGLAASAA 88 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH-----------HHHHHHHHHHHhc-CCCEEEEECCchhhHH
Confidence 47899999999999999999999864 44554421 1233444444555 6999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccc------------cccccCCcchhh------------------hhh------------
Q 030339 81 LEMALACDLRICGEAALLGLPET------------GLAIIPGAGGTQ------------------RLP------------ 118 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~~~~------------------~l~------------ 118 (179)
+.++++||++++++++.|+.... ++|+-+...-+- .+.
T Consensus 89 y~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~ 168 (214)
T cd07022 89 YWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVA 168 (214)
T ss_pred HHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865422 222211100000 000
Q ss_pred -----cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 119 -----RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 119 -----~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|.+.....+++. |..+++++|++.||||++...+++.
T Consensus 169 ~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 169 AVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 011133334444 8999999999999999997554443
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.72 E-value=1.7e-16 Score=116.01 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++.+.|+.++.++.+ .+.|.+.||. + .....+.+.+..++||+++.++|.|.|+|+
T Consensus 17 ~~~~~~~l~~~~~~~~i-~l~inspGG~-------~--------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~ 74 (160)
T cd07016 17 AKEFKDALDALGDDSDI-TVRINSPGGD-------V--------------FAGLAIYNALKRHKGKVTVKIDGLAASAAS 74 (160)
T ss_pred HHHHHHHHHhccCCCCE-EEEEECCCCC-------H--------------HHHHHHHHHHHhcCCCEEEEEcchHHhHHH
Confidence 46788889998887443 4555555332 2 123456777888999999999999999999
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcc---------------hhhhhhcccC--HHHHHHHHhcCCCcCHHHHHhc
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDAMSL 144 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~ 144 (179)
.++++||+|+++++++|.++....+..+... ....+.+..| .....+++..+..++++||+++
T Consensus 75 ~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~ 154 (160)
T cd07016 75 VIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVEL 154 (160)
T ss_pred HHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHc
Confidence 9999999999999999999887766555432 2233666677 6777888888889999999999
Q ss_pred Cccccc
Q 030339 145 GLVNYY 150 (179)
Q Consensus 145 Glv~~v 150 (179)
||||+|
T Consensus 155 GliD~v 160 (160)
T cd07016 155 GFADEI 160 (160)
T ss_pred CCCCcC
Confidence 999986
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.70 E-value=3.8e-16 Score=118.72 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCC--CcEEEEEcccccch
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALGG 79 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~ia~v~G~a~g~ 79 (179)
..+|.+.|+.+++|+++++|||+.. |.|.++. ...++...+.+++ ||+|+.++|.|.|+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~--------------~~~~l~~~i~~~~~~kpvia~v~g~a~s~ 75 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVV--------------ASEEIYEKLKKLKAKKPVVASMGGVAASG 75 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHH--------------HHHHHHHHHHHhcCCCCEEEEECCccchH
Confidence 4688999999999999999999986 4566552 2244555566666 99999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccc------------cccccCCcc--------------hh----hhh------------
Q 030339 80 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAG--------------GT----QRL------------ 117 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~--------------~~----~~l------------ 117 (179)
|+.++++||.++++|++.++...+ ++|+-+... .+ ..+
T Consensus 76 g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 155 (207)
T TIGR00706 76 GYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFV 155 (207)
T ss_pred HHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766333 223321000 00 000
Q ss_pred -----hcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 118 -----PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 118 -----~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
.|.+......++ ..++.+++++|++.||||++...+++.+.+
T Consensus 156 ~~va~~R~~~~~~~~~~-~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~ 202 (207)
T TIGR00706 156 QVVAKGRNLPVEDVKKF-ADGRVFTGRQALKLRLVDKLGTEDDALKWL 202 (207)
T ss_pred HHHHhcCCCCHHHHHHH-hcCCcccHHHHHHcCCCcccCCHHHHHHHH
Confidence 011223333343 578899999999999999997555544433
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.66 E-value=1.2e-15 Score=117.04 Aligned_cols=141 Identities=21% Similarity=0.170 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
++.+|.+.|+.+..||++++|||+.+ +..| ++.+. +++.+.++.+...+||+||.++| +.++|
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~--------------~el~~~i~~~~~~~kpVia~~~~-~~sgg 92 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKL--------------EELRQALERFRASGKPVIAYADG-YSQGQ 92 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHH--------------HHHHHHHHHHHHhCCeEEEEeCC-CCchh
Confidence 36789999999999999999999998 4445 44433 34466677777789999999998 88999
Q ss_pred HHHHhhcCEEEEcCCceeeccccc------------ccccCCc---------chhhh-----------hh----------
Q 030339 81 LEMALACDLRICGEAALLGLPETG------------LAIIPGA---------GGTQR-----------LP---------- 118 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~------------~G~~p~~---------~~~~~-----------l~---------- 118 (179)
+.++++||.+++.+.+.|+...+. +|+-+.. +..+. +.
T Consensus 93 y~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f 172 (222)
T cd07018 93 YYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQY 172 (222)
T ss_pred hhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875331 2322210 00000 00
Q ss_pred -------cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 119 -------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 119 -------~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|.+......+ +..|+.+++++|++.||||++...+++.+.
T Consensus 173 ~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 173 LADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 0011222233 335899999999999999999765555443
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.53 E-value=1.8e-13 Score=101.49 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
..|.+.|+++++++ .+.|++.=++ .|+++ .....+...+..+++|+|+.|+|.|.|+|+.
T Consensus 16 ~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v--------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ 75 (178)
T cd07021 16 AFVERALKEAKEEG-ADAVVLDIDT-----PGGRV--------------DSALEIVDLILNSPIPTIAYVNDRAASAGAL 75 (178)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCH--------------HHHHHHHHHHHhCCCCEEEEECCchHHHHHH
Confidence 45788899999886 6777776652 23333 3456677888899999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCC----c---chhhh---hhcc--cCHHHHHHHHhcC-------------CCcC
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPG----A---GGTQR---LPRL--VGKSVAKDIIFTG-------------RKVS 137 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~----~---~~~~~---l~~~--~g~~~a~~l~l~g-------------~~~~ 137 (179)
++++||+++++|++.|+.+++-.+-..+ - ..... +.+. -+...+..|+... ..++
T Consensus 76 ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lt 155 (178)
T cd07021 76 IALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLT 155 (178)
T ss_pred HHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeC
Confidence 9999999999999999988553221100 0 00001 1112 1356667777665 3799
Q ss_pred HHHHHhcCccccccCC
Q 030339 138 GKDAMSLGLVNYYVPA 153 (179)
Q Consensus 138 a~~a~~~Glv~~v~~~ 153 (179)
++||++.|++|.+.++
T Consensus 156 a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 156 ADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhCCeEEEECC
Confidence 9999999999999863
No 103
>PRK10949 protease 4; Provisional
Probab=99.39 E-value=5.6e-12 Score=109.17 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.|+.+..|+++|+|||+-++++ ... ...+.+++.+.+++...||+|+.+.+.|.+||+.
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~-----------~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~ 413 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSV-----------TASEVIRAELAAARAAGKPVVVSMGGMAASGGYW 413 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcH-----------HHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHH
Confidence 467889999999999999999987432 211 1234556666667778899999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccc------------cccccCCcchhhhhh--------------------------------
Q 030339 83 MALACDLRICGEAALLGLPET------------GLAIIPGAGGTQRLP-------------------------------- 118 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~~~~~l~-------------------------------- 118 (179)
++++||.+++.|.+..+.-.+ ++|+-.+...+..+.
T Consensus 414 iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va 493 (618)
T PRK10949 414 ISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVA 493 (618)
T ss_pred HHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877555322 233322211111110
Q ss_pred --cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 119 --RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 119 --~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
|.+......+ +..|+.+++++|++.||||++-. .+++.+.+++++..
T Consensus 494 ~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~----~~~ai~~a~~~a~~ 542 (618)
T PRK10949 494 DSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGD----FDDAVAKAAELAKL 542 (618)
T ss_pred hhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCC----HHHHHHHHHHHcCC
Confidence 1112333333 45899999999999999999954 33455555555554
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.32 E-value=3.7e-11 Score=88.41 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccch
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALGG 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g~ 79 (179)
.-|.+.++.++++ ..+.|+|.=+ |.|+++ .....+...+...++||++.++ |.|.++
T Consensus 16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v--------------~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSa 75 (172)
T cd07015 16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRA--------------DAAGNIVQRIQQSKIPVIIYVYPPGASAASA 75 (172)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCcCEEEEEecCCCeehhH
Confidence 3567888888776 4577777665 224433 2234556677788999999999 999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCC----c-------chhhh---hhcccC--HHHHHHHHhcCCCcCHHHHHh
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPG----A-------GGTQR---LPRLVG--KSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~----~-------~~~~~---l~~~~g--~~~a~~l~l~g~~~~a~~a~~ 143 (179)
|+.++++||.+++.|++.++...+..+..+. . ....+ +.+.-| ...+.+++.....++++||++
T Consensus 76 g~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~ 155 (172)
T cd07015 76 GTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALK 155 (172)
T ss_pred HHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHH
Confidence 9999999999999999999998875432120 0 00011 112222 567778888889999999999
Q ss_pred cCccccccCC
Q 030339 144 LGLVNYYVPA 153 (179)
Q Consensus 144 ~Glv~~v~~~ 153 (179)
+|+||.+.+.
T Consensus 156 ~G~iD~ia~~ 165 (172)
T cd07015 156 YGVIEVVARD 165 (172)
T ss_pred cCCceeeeCC
Confidence 9999999864
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.29 E-value=5.3e-11 Score=87.11 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++.+.|..++.++..+.|+|.=+ |.|.++ .....++..+...++|+++.+.|.|.++|.
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v--------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~ 74 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV--------------FAGMAIYDTIKFIKADVVTIIDGLAASMGS 74 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH--------------HHHHHHHHHHHhcCCCceEEEEeehhhHHH
Confidence 4577888889998877677766555 223333 223456677778899999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhhhcc--cCHHHHHHHHhcCCCcCHHHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRL--VGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~--~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
.+++++| .|++.|++.+.++.+.-+......-. ..+.+. .......+++..+..++++||+
T Consensus 75 ~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~ 154 (162)
T cd07013 75 VIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAV 154 (162)
T ss_pred HHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHH
Confidence 9999999 68888999988765432221110000 112222 2356666777777788999999
Q ss_pred hcCccccc
Q 030339 143 SLGLVNYY 150 (179)
Q Consensus 143 ~~Glv~~v 150 (179)
++||||++
T Consensus 155 ~~GliD~i 162 (162)
T cd07013 155 EYGFADTI 162 (162)
T ss_pred HcCCCCcC
Confidence 99999985
No 106
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.24 E-value=9.1e-11 Score=94.51 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.|+.+..||+++.|+|+=++|+ +... ....+.+.++++..-+ |+++.|+++|.+||+.
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPG-----G~v~-----------as~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~ 145 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPG-----GSVV-----------ASELIARALKRLRAKK-PVVVSVGGYAASGGYY 145 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcC-----Cchh-----------HHHHHHHHHHHHhhcC-CEEEEECCeecchhhh
Confidence 567888999999999999999887433 2221 1234455556665555 9999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccC----------------------------------------
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG---------------------------------------- 122 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g---------------------------------------- 122 (179)
++++||.+||+|++..+.-.+..+. |+ ...+-+..|
T Consensus 146 IA~aAd~I~a~p~si~GSIGVi~~~-~~---~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F 221 (317)
T COG0616 146 IALAADKIVADPSSITGSIGVISGA-PN---FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEF 221 (317)
T ss_pred hhccCCEEEecCCceeeeceeEEec-CC---HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865554442 11 112222233
Q ss_pred ----------HHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 123 ----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 123 ----------~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
......-+.+|+-+++++|++.||||++...++..
T Consensus 222 ~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 222 VDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAV 266 (317)
T ss_pred HHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHH
Confidence 11223456689999999999999999997544333
No 107
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.10 E-value=8.9e-10 Score=88.59 Aligned_cols=104 Identities=23% Similarity=0.253 Sum_probs=69.7
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeeccccc------------ccccCCcchhhh---------
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG------------LAIIPGAGGTQR--------- 116 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~------------~G~~p~~~~~~~--------- 116 (179)
+.++...+||+++.+++.|.+||+.++++||.+++.|.+.++...+. +|+-+...-+-.
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 45567789999999999999999999999999999999987764331 122110000000
Q ss_pred ---------hhcccC-----------HH---HHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHH
Q 030339 117 ---------LPRLVG-----------KS---VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161 (179)
Q Consensus 117 ---------l~~~~g-----------~~---~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~ 161 (179)
+...+. .. ...+-+.+|+.+++++|++.||||++...+++..++.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 000000 01 1123455799999999999999999987666654433
No 108
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.08 E-value=1.3e-09 Score=80.45 Aligned_cols=130 Identities=11% Similarity=0.048 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++...+..++.++..+.|+|.=+ |.|+|+ .....++..+...+.|+++.+.|.|.+.|.
T Consensus 23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v--------------~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~ 83 (171)
T cd07017 23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSV--------------TAGLAIYDTMQYIKPPVSTICLGLAASMGA 83 (171)
T ss_pred HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEEeEehhHHH
Confidence 3567778888887755455555443 223333 223345566667799999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccccccCCcc---------------hhhhhhcc--cCHHHHHHHHhcCCCcCHHHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
.+++++| .|++.+++.|.++++..+..-... ....+.+. .......+++.....++++||+
T Consensus 84 ~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~ 163 (171)
T cd07017 84 LLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAK 163 (171)
T ss_pred HHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHH
Confidence 9999999 799999999999887654432210 01112222 2345666777788899999999
Q ss_pred hcCccccc
Q 030339 143 SLGLVNYY 150 (179)
Q Consensus 143 ~~Glv~~v 150 (179)
++||||+|
T Consensus 164 e~GiiD~V 171 (171)
T cd07017 164 EYGLIDKI 171 (171)
T ss_pred HcCCCccC
Confidence 99999986
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.04 E-value=3.9e-09 Score=80.18 Aligned_cols=133 Identities=12% Similarity=0.111 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++...|..++.++..+.|.+.=+ |.|+++ .....++..+...+.|+++.+.|.|.+.|.
T Consensus 49 ~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v--------------~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~ 109 (207)
T PRK12553 49 ANDVMAQLLVLESIDPDRDITLYIN-----SPGGSV--------------TAGDAIYDTIQFIRPDVQTVCTGQAASAGA 109 (207)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcH--------------HHHHHHHHHHHhcCCCcEEEEEeehhhHHH
Confidence 3567788888876543333333332 223333 223456677778888999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccc-c-ccCCc---------------chhhhhhccc--CHHHHHHHHhcCCCcCHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGL-A-IIPGA---------------GGTQRLPRLV--GKSVAKDIIFTGRKVSGKD 140 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~-G-~~p~~---------------~~~~~l~~~~--g~~~a~~l~l~g~~~~a~~ 140 (179)
.++++|| .|++.+++.|.++.+.. | ..... .....+.+.. ......+++-.+..++|+|
T Consensus 110 lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~E 189 (207)
T PRK12553 110 VLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEE 189 (207)
T ss_pred HHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHH
Confidence 9999999 59999999999987753 2 11000 0011223332 3566667777889999999
Q ss_pred HHhcCccccccCC
Q 030339 141 AMSLGLVNYYVPA 153 (179)
Q Consensus 141 a~~~Glv~~v~~~ 153 (179)
|+++||||+|++.
T Consensus 190 A~e~GliD~I~~~ 202 (207)
T PRK12553 190 AKDYGLVDQIITS 202 (207)
T ss_pred HHHcCCccEEcCc
Confidence 9999999999864
No 110
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.99 E-value=9.8e-09 Score=77.61 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcch---------------hhhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGG---------------TQRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~---------------~~~l 117 (179)
..++..+...+.|+++.+.|.|.|.|..++++++ .|++.|++++.+..+.-+......- ...+
T Consensus 79 ~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~ 158 (200)
T PRK00277 79 LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEIL 158 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777889999999999999999999764 6899999988887664222111000 0123
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+..| .....+++.....++|+||+++||||+|++.
T Consensus 159 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 159 AEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 33333 4566677777889999999999999999864
No 111
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.96 E-value=1.1e-08 Score=77.03 Aligned_cols=104 Identities=13% Similarity=-0.010 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcch---------------hhh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQR 116 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~---------------~~~ 116 (179)
...++..+...+.||++.+.|.|.+.|..++++||. |++.|++++-...+.-+......- ...
T Consensus 70 g~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~ 149 (197)
T PRK14512 70 GFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDI 149 (197)
T ss_pred HHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999999999986 999999998776654332211110 011
Q ss_pred hhccc--CHHHHHHHHhcCCCcCHHHHHhcCccccccCC-ChHH
Q 030339 117 LPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 157 (179)
Q Consensus 117 l~~~~--g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-~~~~ 157 (179)
+.+.. ......+++.....++++||+++||||+|++. +++.
T Consensus 150 ~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 150 IAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 22222 24556677777789999999999999999964 4443
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.96 E-value=2e-09 Score=80.21 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh---------------hh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QR 116 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~---------------~~ 116 (179)
...++..+..++.|+++.+.|.|.+.|..++++||. |++.+++.|.++++..+........ ..
T Consensus 63 g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~ 142 (182)
T PF00574_consen 63 GLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANI 142 (182)
T ss_dssp HHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999999 8999999999998865544311111 11
Q ss_pred hhcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 117 LPRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 117 l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
+.+. .......+++-....++++||+++||||+|+..
T Consensus 143 ~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 143 YAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1222 224555566666678899999999999999753
No 113
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.93 E-value=3.7e-08 Score=85.46 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.++.+.|+.+.+||.|++|+|.-.+ +.|..+. ..+++++.+..+....||++|..++++ .+|+
T Consensus 78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~-----------~~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Y 141 (584)
T TIGR00705 78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSP-----------HLVEIGSALSEFKDSGKPVYAYGTNYS-QGQY 141 (584)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHH-----------HHHHHHHHHHHHHhcCCeEEEEEcccc-chhh
Confidence 56899999999999999999999762 1133221 134566677778788999999988765 6789
Q ss_pred HHHhhcCEEEEcCCceeecc
Q 030339 82 EMALACDLRICGEAALLGLP 101 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p 101 (179)
.|+++||.+++.|.+.+++.
T Consensus 142 ylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 142 YLASFADEIILNPMGSVDLH 161 (584)
T ss_pred hhhhhCCEEEECCCceEEee
Confidence 99999999999999887653
No 114
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.87 E-value=3.9e-08 Score=74.20 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccc-cCCcch---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGAGG---------------TQR 116 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~-~p~~~~---------------~~~ 116 (179)
..++..+...+-|+.+.+.|.|.+.|..|++++| .|++.++++|-++.+..|. .....- ...
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV 157 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999999 6999999999998875552 211100 112
Q ss_pred hhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 117 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 117 l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+.+..| .....+++.....++|+||+++||||+|+++.
T Consensus 158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 222222 44556677777899999999999999998653
No 115
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.87 E-value=5.5e-08 Score=73.01 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+++...|..++.++..+-|.+.=+ |.|+|+ .....++..+...+.|+.+.+.|.|.+.|..
T Consensus 41 ~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v--------------~~g~~I~d~l~~~~~~v~t~~~G~AaSaasl 101 (191)
T TIGR00493 41 NLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSI--------------TAGLAIYDTMQFIKPDVSTICIGQAASMGAF 101 (191)
T ss_pred HHHHHHHHHhhccCCCCCEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEEEeeccHHHH
Confidence 455666666775543333444333 123333 2233455566677778888888999999999
Q ss_pred HHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhhhccc--CHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRLV--GKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~~--g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
+++++| .|++.|++.|.++.+.-|......-. ..+.+.. +.....+++.....++|+||++
T Consensus 102 I~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~ 181 (191)
T TIGR00493 102 LLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKE 181 (191)
T ss_pred HHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHH
Confidence 998766 69999999999987753322111111 1133333 3466667777888999999999
Q ss_pred cCccccccC
Q 030339 144 LGLVNYYVP 152 (179)
Q Consensus 144 ~Glv~~v~~ 152 (179)
+||||+|+.
T Consensus 182 ~GliD~ii~ 190 (191)
T TIGR00493 182 YGLIDSVLT 190 (191)
T ss_pred cCCccEEec
Confidence 999999874
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.86 E-value=1.8e-07 Score=74.88 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||......||++++.+++.++. +.|.+..+.++.. ..++.+..
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~aA 248 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLDAA 248 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHHHH
Confidence 45556666677889999999999999888877666799999999998873 2234444433332 23333322
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..-++++++++++|+||+|++ + .+ +.....+..+++.+.++..+.
T Consensus 249 -~~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~ 306 (322)
T CHL00198 249 -EALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKILSPSELK 306 (322)
T ss_pred -HHcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445999999999999999996 3 11 223334455666666666554
No 117
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.84 E-value=4.4e-09 Score=76.34 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=33.1
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccc
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET 103 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~ 103 (179)
+.+..||++|.++|.+.++++.++++||.+++.|.+.++...+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence 4578999999999999999999999999999999998887533
No 118
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.84 E-value=2.9e-07 Score=71.93 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+...+.|+|++|-|.|.|||......||++++.+++.++. +.|.+.....+...--...+.+.
T Consensus 122 ~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~- 194 (256)
T PRK12319 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAEL- 194 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHH-
Confidence 45566677778899999999999999999988888999999999998773 22333333233221111222223
Q ss_pred hcCCCcCHHHHHhcCccccccCCC--h-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVPAG--Q-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~~~--~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..+++.++.+.|+||+|++.. + +.+...+..+++...++..+.
T Consensus 195 ---~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (256)
T PRK12319 195 ---MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLL 246 (256)
T ss_pred ---cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 378999999999999999632 1 223345556666677776554
No 119
>PRK10949 protease 4; Provisional
Probab=98.81 E-value=1.3e-07 Score=82.28 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.++.++|+.+.+||.|++|||.-.+.. |... .-.+++++.+..+....||++|.-+ .+..+++
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~-----------a~~~eI~~ai~~fk~sGKpVvA~~~-~~~s~~Y 160 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ-----------PSMQYIGKALREFRDSGKPVYAVGD-SYSQGQY 160 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH-----------HHHHHHHHHHHHHHHhCCeEEEEec-Cccchhh
Confidence 4578999999999999999999987321 1111 1135567777788888999999644 4456789
Q ss_pred HHHhhcCEEEEcCCceeecc
Q 030339 82 EMALACDLRICGEAALLGLP 101 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p 101 (179)
.|+++||.+++.|.+.+++.
T Consensus 161 yLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 161 YLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhCCEEEECCCceEEEe
Confidence 99999999999999887654
No 120
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.75 E-value=2e-07 Score=70.09 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcc---------------hhhhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l 117 (179)
..++..+...+-|+.+.+.|.|.+.|..|++++|. |++.+++++..+.+.-|..-... ....+
T Consensus 73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~y 152 (196)
T PRK12551 73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTEL 152 (196)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 35666777888899999999999999999999985 89999999988877533221110 00112
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
.++.| .....+++..-..++|+||+++||||+|++..
T Consensus 153 a~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 153 SERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 22223 34556667677799999999999999998753
No 121
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.74 E-value=8.3e-07 Score=71.13 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||..-...||++++.+++.++ +.++.+....+-+. ...+.+..
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aa 245 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAA 245 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHH
Confidence 4556677788889999999999999988887666679999999999877 44444444344322 12333333
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
- ...+++.++++.|+||+|++ + .+ +.+...+..+++.+.++..+.
T Consensus 246 e-~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~ 303 (319)
T PRK05724 246 E-AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELL 303 (319)
T ss_pred H-HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 55799999999999999996 3 12 223334455666666666554
No 122
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.73 E-value=2.5e-07 Score=70.73 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l 117 (179)
..++..+...+-||.+.+-|.|.+.|..|++++|. |++.|++++-.+.+.-|......-. ..+
T Consensus 102 laIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iy 181 (221)
T PRK14514 102 LGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTII 181 (221)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999996 9999999999888754432211100 112
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+..| .....+.+.....++|+||+++||||+|++.
T Consensus 182 a~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 182 ADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 22223 4555666777889999999999999999853
No 123
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.73 E-value=8.4e-07 Score=71.03 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.|.|||..-...||++++.+++.++ +.++.+....+-+- ...+.+..
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd--~~~a~~aa 245 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKD--ASKAPKAA 245 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccc--hhhHHHHH
Confidence 4556667777889999999999999988887666679999999999877 44333333333221 12222222
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
.-..+++.++.+.|+||.|++ + .+ +.+...+..+++.+.++..+.
T Consensus 246 -e~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 303 (316)
T TIGR00513 246 -EAMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELK 303 (316)
T ss_pred -HHccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 235789999999999999996 3 11 223344556666667766554
No 124
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.70 E-value=2e-09 Score=86.46 Aligned_cols=158 Identities=18% Similarity=0.101 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
..+|..-|+.+..+..+++.++|+...+.|++|.|..+. .....-......++++++...++++.|+.+++||++.-++
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 356777788888998999999999878899999999887 4445556666778889999999999999999999998888
Q ss_pred --HHHHhhcCEEEEcCC--ceeecccccccc-cCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC--
Q 030339 81 --LEMALACDLRICGEA--ALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 153 (179)
Q Consensus 81 --~~l~~~~D~~va~~~--a~~~~p~~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-- 153 (179)
+.++-+|+|++...- -..+..+...++ .|+. ....+...+|...+..-+.-+.-++-.|+.+-|+++++.+.
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~-~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~ 242 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPW-LIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIE 242 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHH-HHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhH
Confidence 889999999999844 334667776663 3332 23333344555555566667789999999999999999884
Q ss_pred ChHHHHH
Q 030339 154 GQAQLKA 160 (179)
Q Consensus 154 ~~~~~~a 160 (179)
+++.+..
T Consensus 243 eel~~~~ 249 (380)
T KOG1683|consen 243 EELLEKG 249 (380)
T ss_pred HHHHHHH
Confidence 4444333
No 125
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.70 E-value=1e-06 Score=72.50 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||..-...||+++|.+++.++. +-|.+..+.++....-...+.+
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe-- 316 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE-- 316 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH--
Confidence 45566677778899999999999999777766666899999999987763 2234444433333222222223
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
...+++++++++|+||+|++ + .+ +.....+..+++.+.++..+.
T Consensus 317 --alkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~ 373 (431)
T PLN03230 317 --ALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELL 373 (431)
T ss_pred --HcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34999999999999999996 3 12 223334455666677766554
No 126
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.67 E-value=1.3e-06 Score=76.02 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHH
Q 030339 50 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 129 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l 129 (179)
....+.+.+..+.....|+|++|-|.|.|||......||+++|.+++.++. +-|.++.+.++...--...|.
T Consensus 265 q~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAA-- 336 (762)
T PLN03229 265 QGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAA-- 336 (762)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHH--
Confidence 345566677778899999999999999999988888899999999987662 224444443333322222222
Q ss_pred HhcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 130 IFTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 130 ~l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..-.+++++.+++|+||+|+| + .+ +.........++...++..+.
T Consensus 337 --e~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~ 394 (762)
T PLN03229 337 --EKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELL 394 (762)
T ss_pred --HHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445999999999999999996 3 11 222334445556666666554
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.67 E-value=5.3e-07 Score=68.03 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh-----------------h
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------Q 115 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~-----------------~ 115 (179)
..++..+...+-||.+.+.|.|.+.+..|++++|- |++.|++++-.+.+.-|.. +... .
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~ 152 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVD 152 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999999999996 9999999998887754432 1111 1
Q ss_pred hhhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 116 RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 116 ~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
.+.+..| .....+++-....++|+||+++||||+|+++.
T Consensus 153 iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 153 IYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 1222333 45556677677799999999999999998653
No 128
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.49 E-value=1e-06 Score=68.61 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+++.++++....+..+ .++|...|| ++ +...++.+.+.+++.|+.+.|+.+|+++|..
T Consensus 78 e~v~raI~~~~~~~~I-dLii~TpGG-------~v--------------~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTl 135 (285)
T PF01972_consen 78 EFVLRAIREAPKDKPI-DLIIHTPGG-------LV--------------DAAEQIARALREHPAKVTVIVPHYAMSAGTL 135 (285)
T ss_pred HHHHHHHHhcCCCCce-EEEEECCCC-------cH--------------HHHHHHHHHHHhCCCCEEEEECcccccHHHH
Confidence 4566677776666554 344444422 22 3345566778889999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhh
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l 117 (179)
++++||.++|.+++.+|.-++.+|..|.......+
T Consensus 136 IALaADeIvM~p~a~LGpiDPqi~~~pA~sil~~~ 170 (285)
T PF01972_consen 136 IALAADEIVMGPGAVLGPIDPQIGQYPAASILKAV 170 (285)
T ss_pred HHHhCCeEEECCCCccCCCCccccCCChHHHHHHH
Confidence 99999999999999999999999988865444333
No 129
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.49 E-value=2.3e-06 Score=64.06 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEE--EEcCCceeecccccccccCCcchh---------------hhhh
Q 030339 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGAGGT---------------QRLP 118 (179)
Q Consensus 56 ~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~--va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~ 118 (179)
..+..+...+.||...+-|.+.+.|..|++++|.. ++.|++++-.+.+.-|+.-...=. ..+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999995 999999988877763332111000 0111
Q ss_pred cccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 119 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 119 ~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+.-| .....+..-....++|+||+++||||+|.+..
T Consensus 156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 1122 22233344456688999999999999998654
No 130
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.37 E-value=2.1e-05 Score=60.94 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHh---cCCCcEEEEEcccccchhHH-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHH
Q 030339 49 FYVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKS 124 (179)
Q Consensus 49 ~~~~~~~~~~~~~~---~~~kp~ia~v~G~a~g~G~~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~ 124 (179)
.....+.++...+. ..+.|+|+.|-|.++|||+. +.+.+|.++|.|++.++ +.++.+....+.+-. .
T Consensus 88 G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~ 158 (238)
T TIGR03134 88 GINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--E 158 (238)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--h
Confidence 33444555555554 55699999999999998855 44458999998888766 444444444443322 3
Q ss_pred HHHHHHhcC--CCcCHHHHHhcCccccccCCCh
Q 030339 125 VAKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 125 ~a~~l~l~g--~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
...++.-+- ...+...+.++|+||+|+++.+
T Consensus 159 ~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 159 ELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 333443322 2456778999999999997544
No 131
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.8e-06 Score=67.96 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 78 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g 78 (179)
.+.+.+.++.++++.. .+||+.=+.++.+ .+.+++.++.|.+.+.|++..|. ++|.+
T Consensus 42 ~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl-------------------~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaS 101 (436)
T COG1030 42 ADYLQRALQSAEEENA-AAVVLELDTPGGL-------------------LDSMRQIVRAILNSPVPVIGYVVPDGARAAS 101 (436)
T ss_pred HHHHHHHHHHHHhCCC-cEEEEEecCCCch-------------------HHHHHHHHHHHHcCCCCEEEEEcCCCcchhc
Confidence 3567888888888763 2444433324322 46788899999999999999884 57999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccc---cCCcchhhh-------hhcc--cCHHHHHHHHhcCCCcCHHHHHhcCc
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAI---IPGAGGTQR-------LPRL--VGKSVAKDIIFTGRKVSGKDAMSLGL 146 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~---~p~~~~~~~-------l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Gl 146 (179)
.|..++++||+.+|.|.+.++...+-.+- .+....+.. +.+. -+...+.+++.....++++||.+.|+
T Consensus 102 AGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~v 181 (436)
T COG1030 102 AGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGV 181 (436)
T ss_pred hhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCc
Confidence 99999999999999999999987664332 111110111 1111 13677889999999999999999999
Q ss_pred cccccC
Q 030339 147 VNYYVP 152 (179)
Q Consensus 147 v~~v~~ 152 (179)
+|-+..
T Consensus 182 id~iA~ 187 (436)
T COG1030 182 IDLIAR 187 (436)
T ss_pred cccccC
Confidence 998864
No 132
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.33 E-value=1.6e-05 Score=62.73 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=55.0
Q ss_pred HhcCCCcEEEEEccc--ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCH--HHHHHHHhcCCCc
Q 030339 61 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK--SVAKDIIFTGRKV 136 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~--a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~--~~a~~l~l~g~~~ 136 (179)
+... .|+|+.+.|+ |+||+..++.+||++|+++++++++..+. ......|. -...+--+..+.+
T Consensus 133 ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~l~~~~l 200 (274)
T TIGR03133 133 ARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWRTT 200 (274)
T ss_pred HhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhccccccc
Confidence 3344 9999999999 89999999999999999999887764331 11111110 0111222233445
Q ss_pred CHHHHHhcCccccccCC
Q 030339 137 SGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 137 ~a~~a~~~Glv~~v~~~ 153 (179)
.+......|++|.++++
T Consensus 201 GG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 201 GGKHRFLSGDADVLVED 217 (274)
T ss_pred chHhHhhcccceEEeCC
Confidence 56677889999999976
No 133
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=98.30 E-value=1.5e-05 Score=60.94 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh-----------------h
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------Q 115 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~-----------------~ 115 (179)
..++..+...+-|+.+.+-|.|.+.+..|++++|- |++.+++++-++.+.-|.. +... .
T Consensus 97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~ 174 (222)
T PRK12552 97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLE 174 (222)
T ss_pred HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778889999999999999999999996 8999999998887754432 1111 1
Q ss_pred hhhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 116 RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 116 ~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+.+..| .....+.+-.-..++|+||+++||||+|+++
T Consensus 175 iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 175 ILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 1122222 3444455556678999999999999999864
No 134
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.30 E-value=4.6e-05 Score=60.74 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHH--HHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYV--NTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
+.+.++++.+.+. .+-+|.+..+ + |.... +....+. ......+.++.....|.|+++.|+|+||+
T Consensus 143 eKi~r~~e~A~~~-~lPlV~l~ds-g-----Garmq------Egi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 143 EKIVRAVERAIEE-KCPLVIFSAS-G-----GARMQ------EGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-C-----Ccchh------hhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 3456666666665 4556666654 3 22221 1111111 12222344456678999999999999996
Q ss_pred H-HHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 L-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~-~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
. ..++.+|++++.+++.+++...+ .+.+.++.. + .-+.-+++-+.+.|+||.|+++.++...
T Consensus 210 aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~----l--pe~~~~ae~~~~~G~vD~Vv~~~e~r~~ 272 (292)
T PRK05654 210 SASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK----L--PEGFQRAEFLLEHGAIDMIVHRRELRDT 272 (292)
T ss_pred HHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh----h--hhhhcCHHHHHhCCCCcEEECHHHHHHH
Confidence 4 46778999999999887764432 111111111 1 1112256667789999999999999988
Q ss_pred HHHHHHHHhccCH
Q 030339 160 ALEIAQEINQKVQ 172 (179)
Q Consensus 160 a~~~a~~~~~~~~ 172 (179)
..++.+.+..+++
T Consensus 273 l~~~L~~~~~~~~ 285 (292)
T PRK05654 273 LASLLALHTKQPA 285 (292)
T ss_pred HHHHHHHHhcCCC
Confidence 8888877765543
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.20 E-value=6.5e-05 Score=59.70 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh-H
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG-L 81 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G-~ 81 (179)
+.+.++++.+.+. .+-+|.+..+ ++. -+.+ ........ ......+.++.....|.|+++.|+|+||+ +
T Consensus 142 eKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE---g~~sL~~~-ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aa 210 (285)
T TIGR00515 142 EKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE---ALLSLMQM-AKTSAALAKMSERGLPYISVLTDPTTGGVSA 210 (285)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc---chhHHHhH-HHHHHHHHHHHcCCCCEEEEEeCCcchHHHH
Confidence 3456666666655 4456666555 222 1111 01111111 11222344566678999999999999996 4
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHH
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~ 161 (179)
.+++.+|++++.+++.+++...+. +.+.++.. + .-+.-+++-+.+.|+||.|+++.++.....
T Consensus 211 s~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~-----l-pe~~q~ae~~~~~G~vD~iv~~~~~r~~l~ 273 (285)
T TIGR00515 211 SFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK-----L-PEGFQTSEFLLEHGAIDMIVHRPEMKKTLA 273 (285)
T ss_pred HHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc-----c-chhcCCHHHHHhCCCCcEEECcHHHHHHHH
Confidence 467899999999999888754431 11111110 1 111235566778999999999999988887
Q ss_pred HHHHHHhcc
Q 030339 162 EIAQEINQK 170 (179)
Q Consensus 162 ~~a~~~~~~ 170 (179)
++.+.+.++
T Consensus 274 ~~L~~~~~~ 282 (285)
T TIGR00515 274 SLLAKLQNL 282 (285)
T ss_pred HHHHHHhhC
Confidence 777765443
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.16 E-value=3.7e-05 Score=61.36 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=35.8
Q ss_pred HhcCCCcEEEEEccc--ccchhHHHHhhcCEEEEcCCceeeccc
Q 030339 61 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPE 102 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~--a~g~G~~l~~~~D~~va~~~a~~~~p~ 102 (179)
+... .|+|+.+.|. |+||+...+.+||++|+++++.+++..
T Consensus 142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG 184 (301)
T PRK07189 142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG 184 (301)
T ss_pred HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC
Confidence 3444 9999999999 999999999999999999998877643
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=98.08 E-value=0.00026 Score=56.35 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHH-HhcCCCcEEEEEcccccchhH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.+.++++.+.+.. +-+|++..++ |..+.+- ......+.+. ...+.+ ...-..|.|+++.|+|.||+.
T Consensus 155 eKi~ra~e~A~~~r-lPlV~l~~SG------GARmQEg---~~sL~qmak~-saa~~~~~~~~~vP~Isvl~gPt~GG~a 223 (296)
T CHL00174 155 EKITRLIEYATNES-LPLIIVCASG------GARMQEG---SLSLMQMAKI-SSALYDYQSNKKLFYISILTSPTTGGVT 223 (296)
T ss_pred HHHHHHHHHHHHcC-CCEEEEECCC------Ccccccc---chhhhhhHHH-HHHHHHHHHcCCCCEEEEEcCCCchHHH
Confidence 35666777776653 4566666552 2222211 1111111111 111223 225678999999999999986
Q ss_pred H-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 82 E-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 82 ~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
. +++.||++++.+++.+++..++. +- ....+.++ -.--+++-.++.|+||.+++..++.+..
T Consensus 224 as~a~l~Diiiae~~A~IgfAGPrV--Ie-----~t~ge~lp----------e~fq~ae~l~~~G~vD~iV~r~~lr~~l 286 (296)
T CHL00174 224 ASFGMLGDIIIAEPNAYIAFAGKRV--IE-----QTLNKTVP----------EGSQAAEYLFDKGLFDLIVPRNLLKGVL 286 (296)
T ss_pred HHHHHcccEEEEeCCeEEEeeCHHH--HH-----HhcCCcCC----------cccccHHHHHhCcCceEEEcHHHHHHHH
Confidence 5 57779999998888877654321 00 00001111 0112466678899999999988888776
Q ss_pred HHHHHH
Q 030339 161 LEIAQE 166 (179)
Q Consensus 161 ~~~a~~ 166 (179)
..+.+-
T Consensus 287 ~~ll~~ 292 (296)
T CHL00174 287 SELFQL 292 (296)
T ss_pred HHHHHh
Confidence 665543
No 138
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=98.04 E-value=2e-05 Score=61.80 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHh
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 131 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l 131 (179)
+.+.+-+..+.+++.|+||.|-|---+||.-=...+|.++|-++++++. +.|.+..+.++.. .+++.+..
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA- 244 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA- 244 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence 3445556667899999999999999888888788899999999999983 4455555544443 23333333
Q ss_pred cCCCcCHHHHHhcCccccccC
Q 030339 132 TGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 132 ~g~~~~a~~a~~~Glv~~v~~ 152 (179)
..-.+++++.+++|+||.|++
T Consensus 245 e~mkita~dLk~lgiID~II~ 265 (317)
T COG0825 245 EAMKITAHDLKELGIIDGIIP 265 (317)
T ss_pred HHcCCCHHHHHhCCCcceecc
Confidence 445899999999999999996
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.97 E-value=0.00036 Score=59.94 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM 83 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l 83 (179)
...+.++.+++. .+-+|.|.-. + .|..|.+ .+.........+++..+.....|.|+.|-|.++|+|+.-
T Consensus 338 K~~r~i~~a~~~-~lPlV~lvDs-~-G~~~g~~--------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~a 406 (512)
T TIGR01117 338 KIARFIRFCDAF-NIPIVTFVDV-P-GFLPGVN--------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLA 406 (512)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeC-c-CccccHH--------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHH
Confidence 345556666554 4455555544 2 2554432 223334556667778888899999999999998886444
Q ss_pred Hh----hcCEEEEcCCceeecccccccccCCcchhhhh-hcccC----HHHHHH-HH--hcCCCcCHHHHHhcCcccccc
Q 030339 84 AL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRLVG----KSVAKD-II--FTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 84 ~~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l-~~~~g----~~~a~~-l~--l~g~~~~a~~a~~~Glv~~v~ 151 (179)
.. .+|+++++|++.+++ .++.+....+ .+.+. ...+++ .+ ..-+..++..+.+.|+||.|+
T Consensus 407 m~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI 479 (512)
T TIGR01117 407 MCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI 479 (512)
T ss_pred hccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE
Confidence 33 289999999988774 3222222222 21111 111111 11 112245788999999999999
Q ss_pred CCChHHHHHHHHHHHHhcc
Q 030339 152 PAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~ 170 (179)
++.+.........+.+.+.
T Consensus 480 ~P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 480 EPKQTRPKIVNALAMLESK 498 (512)
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 9998887766666555443
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.96 E-value=0.00024 Score=55.46 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHH--HHHHHHHHHHHhcCCCcEEEEEcccccch-
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFY--VNTLRSTFSFLEALPIPTIAVIDGAALGG- 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kp~ia~v~G~a~g~- 79 (179)
+.+.++++.+-++ .+.+|+++.+|| .-. ++....+ +......+.++.....|.|+.+..+..||
T Consensus 144 eki~ra~E~A~e~-k~P~v~f~aSGG------ARM------QEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 144 EKITRAIERAIED-KLPLVLFSASGG------ARM------QEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecCcc------hhH------hHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 3567788888776 467888887732 211 1222211 22344567778889999999999999888
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
...+++..|+.++-|.+.++|...+. .-+...+.++.. --+++-.++.|+||.|++..|+...
T Consensus 211 sASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPeg----------fQ~aEfLlehG~iD~iv~R~elr~t 273 (294)
T COG0777 211 SASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPEG----------FQTAEFLLEHGMIDMIVHRDELRTT 273 (294)
T ss_pred hHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCcc----------hhhHHHHHHcCCceeeecHHHHHHH
Confidence 47899999999999999998875531 112222223222 2246777899999999999888888
Q ss_pred HHHHHHHHhccCH
Q 030339 160 ALEIAQEINQKVQ 172 (179)
Q Consensus 160 a~~~a~~~~~~~~ 172 (179)
...+.+.+...++
T Consensus 274 la~ll~~~~~~~~ 286 (294)
T COG0777 274 LASLLAKLTPQPA 286 (294)
T ss_pred HHHHHHHhCCCCC
Confidence 7777776665444
No 141
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.78 E-value=0.00073 Score=57.90 Aligned_cols=85 Identities=29% Similarity=0.419 Sum_probs=59.2
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCc
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV 136 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~ 136 (179)
..++.. ..|+|+++.|+|.|+|..++..||++|+.++ +.+++... +... ..+|+.+
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~--~~~Ge~~ 181 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE--SATGEEV 181 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH--HHHSSCT
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc--cccCccc
Confidence 444556 9999999999999999999999999999998 77775422 1111 1245677
Q ss_pred CHHH-------HHhcCccccccCCChHHHHHHHHHHHHh
Q 030339 137 SGKD-------AMSLGLVNYYVPAGQAQLKALEIAQEIN 168 (179)
Q Consensus 137 ~a~~-------a~~~Glv~~v~~~~~~~~~a~~~a~~~~ 168 (179)
+.++ +...|.+|.++++++ ++.+.++++.
T Consensus 182 ~~~~lgG~~~h~~~sG~~d~v~~de~---~a~~~ir~~l 217 (493)
T PF01039_consen 182 DSEELGGADVHAAKSGVVDYVVDDEE---DALAQIRRLL 217 (493)
T ss_dssp SHHHHHBHHHHHHTSSSSSEEESSHH---HHHHHHHHHH
T ss_pred cchhhhhhhhhcccCCCceEEEechH---HHHHHHHHhh
Confidence 7654 347899999997652 4444444443
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.48 E-value=0.0015 Score=56.79 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh----hcCEEEEcCCceeecccccccccCCcchhhhhhcc-c-
Q 030339 48 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V- 121 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~-~- 121 (179)
....+...+++..+.....|.|+++-|.++|+|..-.. ..|+++++|++.++ +.++.+....+.+. +
T Consensus 422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~-------vmg~e~aa~il~~~e~~ 494 (569)
T PLN02820 422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG-------VMGGAQAAGVLAQIERE 494 (569)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE-------ecCHHHHHHHHHHHHhh
Confidence 44567778889999999999999999999998865554 56888888777666 44444344333221 1
Q ss_pred -----------CHHHH-HHHH--hcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 122 -----------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 122 -----------g~~~a-~~l~--l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
....+ ++.+ ..-+..++..+.+.|+||.|+++.+.........+...+.
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 495 NKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR 557 (569)
T ss_pred hhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence 11101 1111 1122457778899999999999988876665555544443
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.39 E-value=0.0031 Score=54.30 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCCc-eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH-
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 141 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a-~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a- 141 (179)
-..|.|+++.|.|.||+......||++|+.+++ .+++... ..... .+|+.+++++.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP-----------~vv~~-----------~~Ge~v~~e~lG 210 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP-----------QVIKT-----------VTGEEVTAEQLG 210 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecCh-----------HHHHh-----------hcCcccchhhcc
Confidence 458999999999999998888899999999974 4543211 11111 23444444443
Q ss_pred ----H--hcCccccccCC-ChHHHHHHHHHHHHhc
Q 030339 142 ----M--SLGLVNYYVPA-GQAQLKALEIAQEINQ 169 (179)
Q Consensus 142 ----~--~~Glv~~v~~~-~~~~~~a~~~a~~~~~ 169 (179)
+ .-|.+|.++++ ++..+.++++..-+-+
T Consensus 211 Ga~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 211 GAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred hHHHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 3 57999999864 4555556666555443
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.30 E-value=0.013 Score=50.95 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=55.5
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 139 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ 139 (179)
+.....|.|+++.|.|.|||.....+||++|+.++ +.+.+. |+...+. .+|+.++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~~e 258 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVSAE 258 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccCHH
Confidence 45567999999999999999999999999999876 555542 1111111 234445544
Q ss_pred HH-----H--hcCccccccCCC-hHHHHHHHHHHHH
Q 030339 140 DA-----M--SLGLVNYYVPAG-QAQLKALEIAQEI 167 (179)
Q Consensus 140 ~a-----~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 167 (179)
+. + ..|.+|.+++++ +....++++..-+
T Consensus 259 eLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 259 DLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 43 3 478888888654 3334455555444
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.18 E-value=0.0024 Score=54.72 Aligned_cols=149 Identities=16% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
.+.+..++.. ++-+|.|.-. ..|..|- ..+.........+++..+..++.|+|+.+-|.++|+|+.-..
T Consensus 319 arfi~lcd~~-~iPlv~l~dt--pGf~~g~--------~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~ 387 (493)
T PF01039_consen 319 ARFIRLCDAF-NIPLVTLVDT--PGFMPGP--------EAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMC 387 (493)
T ss_dssp HHHHHHHHHT-T--EEEEEEE--CEB--SH--------HHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHhh-CCceEEEeec--ccccccc--------hhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhc
Confidence 3445555543 4455555543 3455444 233344566777889999999999999999999999876555
Q ss_pred hc----CEEEEcCCceeecccccccccCCcchhhhhhcccC--------H-HHHHHHHh-c-CCCcCHHHHHhcCccccc
Q 030339 86 AC----DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG--------K-SVAKDIIF-T-GRKVSGKDAMSLGLVNYY 150 (179)
Q Consensus 86 ~~----D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g--------~-~~a~~l~l-~-g~~~~a~~a~~~Glv~~v 150 (179)
.. |+++++|+++++.-. |++.....+.+..- . ....+.+- . -+..++..+.+.+++|.+
T Consensus 388 ~~~~~~~~~~Awp~a~~~vm~------~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~i 461 (493)
T PF01039_consen 388 GRGYGPDFVFAWPTAEIGVMG------PEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDI 461 (493)
T ss_dssp GGGGTTSEEEEETT-EEESS-------HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEE
T ss_pred ccccchhhhhhhhcceeeecC------hhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCc
Confidence 55 899999998887422 22222222221111 0 00111111 1 112578999999999999
Q ss_pred cCCChHHHHHHHHHHHHhccC
Q 030339 151 VPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 151 ~~~~~~~~~a~~~a~~~~~~~ 171 (179)
+++.+..........-..+++
T Consensus 462 i~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 462 IDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp SSGGGHHHHHHHHHHHHTTSH
T ss_pred cCHHHHHHHHHHHHHHHHhCc
Confidence 999988877666555544443
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.86 E-value=0.0073 Score=51.65 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCc
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA 96 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a 96 (179)
+... .|.|++|-|.|.|||..+...||++|+.++.
T Consensus 160 ~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 160 ASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred hccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 4445 9999999999999999999999999999984
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.049 Score=42.36 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=52.9
Q ss_pred HHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeeccccccccc-CCcc----hhhh---------------
Q 030339 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII-PGAG----GTQR--------------- 116 (179)
Q Consensus 57 ~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~-p~~~----~~~~--------------- 116 (179)
.+..+..++-||-...-|.|.+-|..|..+ .++.-++.+|..++=+. |.++ ..-.
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~ 216 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLN 216 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 445566777777777789999988777766 34445555555544332 2221 1111
Q ss_pred --hhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 117 --LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 117 --l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
+.+..| .....+-+-.-+.++|+||+++||||+|.+
T Consensus 217 ~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 217 EIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 111111 122222233455679999999999999985
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.60 E-value=0.037 Score=47.50 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH----HhhcCEEEEcCCceeecccccccccCCcchhhhhhcc
Q 030339 45 SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM----ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120 (179)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l----~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~ 120 (179)
.+....++....++.++.+...|.|..+-|-++|+|+.. ++..|+.+|++++.++.-+ |.+-....+.+.
T Consensus 377 ~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG------~egAv~i~~~k~ 450 (526)
T COG4799 377 QEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMG------PEGAVSILYRKE 450 (526)
T ss_pred HHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeecC------HHHHHHHHHHHH
Confidence 344566677788999999999999999999999998653 3347777777777766321 222222222222
Q ss_pred cC---HHHHH-----H-HH--hcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccC
Q 030339 121 VG---KSVAK-----D-II--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 121 ~g---~~~a~-----~-l~--l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 171 (179)
+. ....+ + +. ..-+-.++--+.+.|+||.|+++.+...........+.+++
T Consensus 451 l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~ 512 (526)
T COG4799 451 LAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKP 512 (526)
T ss_pred hhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCc
Confidence 21 00000 0 11 11222466678889999999999887777666666655553
No 149
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=94.08 E-value=0.31 Score=41.01 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH---HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcc---
Q 030339 47 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE---MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL--- 120 (179)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~---l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~--- 120 (179)
.....+.-..++..+...+.|-|..+.|.++||-+. ..+.-|+.+++|++++++-..+ +....+.+.
T Consensus 404 ~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e 476 (536)
T KOG0540|consen 404 AGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLE 476 (536)
T ss_pred hhchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhh
Confidence 334445556788888889999999999999997544 6778899999999998854331 111112111
Q ss_pred ----cCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 121 ----VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 121 ----~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
.+...+. .+ |.|+. +...||+|.++++.+.....-..-+..+++
T Consensus 477 ~a~~~~~~~~E-~f--~npy~---a~~Rg~~D~II~p~~tR~vl~~~l~~~~~~ 524 (536)
T KOG0540|consen 477 KAVALKAPYIE-KF--GNPYY---AAARGWDDGIIDPSDTRKVLGLDLQAAANK 524 (536)
T ss_pred hhhhhcchHHH-Hh--cCccH---HHHhhccccccChhHhhHHHHHHHHHHhcC
Confidence 1222222 22 55543 467899999999877665443333433333
No 150
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=91.37 E-value=0.95 Score=35.96 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
.+.++|+.+++||+.++||+-|.-|+ +- +++. .+++.. ...+||+|+.+-|.+.
T Consensus 187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~a------Ee~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEADPETEAIVMIGEIGG------PA------EEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhcCccccEEEEEecCCC------cH------HHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 46789999999999999999998321 11 1112 223333 3445999999999876
No 151
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=87.95 E-value=5.5 Score=30.90 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHH-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
....+.+...+.-.-|+|+.+-|.+++|||- ..+.+|.+++-+++.+. -+++. ...+..+ .+...-.++.
T Consensus 92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~----vM~~~----s~ARVTk-~~ve~Le~la 162 (234)
T PF06833_consen 92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIH----VMGKP----SAARVTK-RPVEELEELA 162 (234)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeee----cCChH----HhHHHhh-cCHHHHHHHh
Confidence 3344455566778899999999999999854 88999999987754443 12222 1223332 2333444444
Q ss_pred hcCCC--cCHHHHHhcCccccccCC
Q 030339 131 FTGRK--VSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 131 l~g~~--~~a~~a~~~Glv~~v~~~ 153 (179)
-+--+ ++.+--.++|.++++.+.
T Consensus 163 ~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 163 KSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred hcCCCcCCCHHHHHHhccHHHHhcc
Confidence 44332 456677789999999873
No 152
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=87.86 E-value=1.7 Score=35.31 Aligned_cols=54 Identities=9% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+++||+.++|++-++.++ . ..++..++++. ...+||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~-------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGG-----T-------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCC-----c-------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 35688999999999999999998321 0 11222233222 2468999999998864
No 153
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=87.17 E-value=2.3 Score=30.18 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
.+.+.++.+.+||++++|++--++-+ +. +.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~----------------d~----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG----------------DG----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----------------H----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC----------------CH----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 35788899999999999999887311 11 2344455556556 99999999874
No 154
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=86.11 E-value=2 Score=36.39 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
.++..+++.++..+++.+|||.=. |+++. ||..| -+ ..+.+.+.++|.|||++| ||-.-- .-
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RG-GGs~e---DL~~F----------n~--e~~~rai~~~~~Pvis~i-GHe~D~-ti 234 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRG-GGSLE---DLWSF----------ND--EKVARAIFLSKIPIISAV-GHETDF-TI 234 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecC-CCCHH---Hhhhc----------Cc--HHHHHHHHcCCCCEEEec-CcCCCc-cH
Confidence 578888988887666666666322 33221 33322 12 357889999999999988 332221 34
Q ss_pred HHhhcCEEEEcCCc--eeeccc
Q 030339 83 MALACDLRICGEAA--LLGLPE 102 (179)
Q Consensus 83 l~~~~D~~va~~~a--~~~~p~ 102 (179)
.=+.+|.+..||.+ .+-.|.
T Consensus 235 ~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 235 SDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred HHHhhhccCCCcHHHHHHhCcc
Confidence 55788999999884 455443
No 155
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=85.14 E-value=2.3 Score=30.79 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
...++|....+||++++|++-+..|-.=| .+....+...+...-. ...++|+|+.+.|...-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~-----------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC-----------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH-----------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch-----------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 46788999999999999999987432222 1112222222111111 24689999999997754
No 156
>PLN02522 ATP citrate (pro-S)-lyase
Probab=84.77 E-value=3.2 Score=36.74 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeC-CCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+++||+.++|++-++ |++ +..++ .+.+++.. .+||+|+..-|.+-
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~----------------~e~~f----~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR----------------DEYSL----VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch----------------hHHHH----HHHHHHhc-CCCCEEEEeccCCC
Confidence 36788999999999999999998 432 11122 22233322 78999999998876
No 157
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=84.06 E-value=2.9 Score=33.73 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCC---CceEEEE-EeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 3 RGLKHAFETISEDS---SANVVMI-RSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 3 ~~l~~~l~~~~~d~---~v~~vvl-~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
.++..+|+.+...+ .+.+||| +|. +++. ||..| -+ ..+.+.+..+|.|||++| ||-.-
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGG--Gs~e---DL~~F----------N~--e~varai~~~~~PvisaI-GHe~D 119 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGG--GSIE---DLWAF----------ND--EEVARAIAASPIPVISAI-GHETD 119 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCC--CChH---Hhccc----------Ch--HHHHHHHHhCCCCEEEec-CCCCC
Confidence 57888999998764 4555555 543 2221 33332 11 357899999999999988 44433
Q ss_pred hhHHHHhhcCEEEEcCCce
Q 030339 79 GGLEMALACDLRICGEAAL 97 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~ 97 (179)
- .-.=+.||.+..||.+-
T Consensus 120 ~-ti~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 120 F-TIADFVADLRAPTPTAA 137 (319)
T ss_pred c-hHHHHHHHhhCCCHHHH
Confidence 2 44567889999998843
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=83.34 E-value=2.7 Score=35.54 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
.++.++++.++..+++.++|+- -||++ -++.+.|.++ .+.+.+.+++.|+|++| ||-.-. .-
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVa-RGGGS-------------iEDLW~FNdE--~vaRAi~~s~iPvISAV-GHEtD~-tL 240 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVA-RGGGS-------------IEDLWAFNDE--IVARAIAASRIPVISAV-GHETDF-TL 240 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEe-cCcch-------------HHHHhccChH--HHHHHHHhCCCCeEeec-ccCCCc-cH
Confidence 5788999999998888888873 22221 1333333333 57899999999999998 332211 22
Q ss_pred HHhhcCEEEEcCCc--eeecc
Q 030339 83 MALACDLRICGEAA--LLGLP 101 (179)
Q Consensus 83 l~~~~D~~va~~~a--~~~~p 101 (179)
.=..+|+|-.||.+ .+..|
T Consensus 241 ~DfVAD~RApTPTaAAE~~vP 261 (440)
T COG1570 241 ADFVADLRAPTPTAAAELVVP 261 (440)
T ss_pred HHhhhhccCCCchHHHHHhCC
Confidence 34568888888874 34444
No 159
>smart00250 PLEC Plectin repeat.
Probab=79.41 E-value=1.6 Score=23.48 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.9
Q ss_pred cCCCcCHHHHHhcCcccc
Q 030339 132 TGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 132 ~g~~~~a~~a~~~Glv~~ 149 (179)
+++++|-.||.+.||||.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 889999999999999986
No 160
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=77.92 E-value=8.1 Score=31.17 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+.+||+.++|++-.+++ |.++ .+..+ ++.... ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~-------~d~~~-------f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAE-------EDAAA-------FIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchH-------HHHHH-------HHHHhc-CCCCEEEEEecCCC
Confidence 3567888888999999999888731 1111 11222 222222 28999999988864
No 161
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=76.01 E-value=9 Score=30.66 Aligned_cols=52 Identities=15% Similarity=0.397 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhc-CCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEA-LPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+.+||+.++|++-.++.+ .+ .. +..+.+.. ..||+|+..-|..-
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~~---~~----------~~---------~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIGG---SA----------EE---------EAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCC---ch----------HH---------HHHHHHHhcCCCCEEEEEecCCC
Confidence 46788999999999999999887311 00 00 11111222 68999999988853
No 162
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=75.51 E-value=1.2 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=16.5
Q ss_pred cCCCcCHHHHHhcCccccc
Q 030339 132 TGRKVSGKDAMSLGLVNYY 150 (179)
Q Consensus 132 ~g~~~~a~~a~~~Glv~~v 150 (179)
+|++++-++|.+.||||.-
T Consensus 18 tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HH
T ss_pred CCeEEcHHHHHHCCCcCHH
Confidence 7899999999999999964
No 163
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=74.35 E-value=7.5 Score=32.89 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCceEEEE-EeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 3 RGLKHAFETISEDSSANVVMI-RSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl-~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.++.++|+.++..+ +.+||| +|. +++ -||..| -+ ..+.+++.++|.|||++| ||-.-- .
T Consensus 179 ~~i~~al~~~~~~~-~Dviii~RGG--GS~---eDL~~F----------n~--e~v~~ai~~~~~Pvis~I-GHE~D~-t 238 (438)
T PRK00286 179 ASIVAAIERANARG-EDVLIVARGG--GSL---EDLWAF----------ND--EAVARAIAASRIPVISAV-GHETDF-T 238 (438)
T ss_pred HHHHHHHHHhcCCC-CCEEEEecCC--CCH---HHhhcc----------Cc--HHHHHHHHcCCCCEEEec-cCCCCc-c
Confidence 57888898887743 344444 553 222 144333 11 357889999999999988 333221 3
Q ss_pred HHHhhcCEEEEcCCc--eeecc
Q 030339 82 EMALACDLRICGEAA--LLGLP 101 (179)
Q Consensus 82 ~l~~~~D~~va~~~a--~~~~p 101 (179)
-.=+.||.|..||.+ .+-.|
T Consensus 239 l~D~vAd~ra~TPtaaae~~~~ 260 (438)
T PRK00286 239 IADFVADLRAPTPTAAAELAVP 260 (438)
T ss_pred HHHHhhhccCCChHHHHHHhCc
Confidence 456788999999884 34444
No 164
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=72.23 E-value=12 Score=29.96 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEeC
Q 030339 4 GLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
++.+.|+.+.+||+.++|++-.+
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 46788999999999999999887
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=70.40 E-value=14 Score=32.34 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
+.+.|+.+.+||+.++|++-+. +. .+... + +++..+.++.||+|+..-|..-
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~k-pp--------------aE~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSK-PP--------------AEAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEe-cC--------------chHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 5678888889999999998885 21 01111 1 3444455569999999988654
No 166
>PRK05665 amidotransferase; Provisional
Probab=65.78 E-value=10 Score=29.44 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 49 FYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 49 ~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
.++....++++.+...++|+++..-|+
T Consensus 75 pwi~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 75 PWIQTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 466777788888888899999776665
No 167
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=64.72 E-value=9.8 Score=32.40 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.++.+.+||+.++|++-.++ + .+.. .+.+..++... .||+|+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~---~-------------~~~~----~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEG---I-------------KDGR----KFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecC---C-------------CCHH----HHHHHHHHHcC-CCCEEEEecCCCh
Confidence 456888999999999999998872 1 1111 23334455545 8999999988864
No 168
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=63.86 E-value=29 Score=27.30 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
.+.++|+.+-+||..+.||+-|+-++ ..+++..+++.+. .-..-+||+++.+-|..
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG------------~AEe~AA~flk~~-----nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG------------SAEEEAAEFLKEY-----NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC------------hhhHHHHHHHHHh-----ccCCCCCceeEEeeccc
Confidence 46789999999999999999998322 1123333333332 13357899999987753
No 169
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=58.17 E-value=27 Score=26.71 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 16 SSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+...++||||+.-++|+ |. .|+..+..++..+..++|+++...-||
T Consensus 58 ~ky~gfvIsGS~~dAf~---d~-----------dWI~KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 58 EKYDGFVISGSKHDAFS---DA-----------DWIKKLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred hhhceEEEeCCcccccc---cc-----------hHHHHHHHHHHHHHhhccceEEEeccH
Confidence 34678899988555565 33 556778888999999999998887776
No 170
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=57.52 E-value=22 Score=31.20 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC
Q 030339 15 DSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD 88 (179)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D 88 (179)
.|+.-|+|-|-. .-=+-.|.+...+ ..+.+....-+..+.+-++.+.+|..|+|.++|-+..---.++...-+
T Consensus 322 ~P~~~VlVaTvr-aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~ 395 (557)
T PRK13505 322 KPDAVVIVATVR-ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKE 395 (557)
T ss_pred CCCEEEEEeehH-HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 466655555443 2225556666665 334455555566677778888899999999999887766555544433
No 171
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=55.25 E-value=10 Score=27.21 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=18.6
Q ss_pred CCceEEEEEeCCCCccccccCcccc
Q 030339 16 SSANVVMIRSSVPKVFCAGADLKVL 40 (179)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~D~~~~ 40 (179)
+++++.=+.|. ++..|+|+||+--
T Consensus 78 ESi~v~D~Agn-~hVLCaGIDLNPA 101 (178)
T PF12268_consen 78 ESIKVKDLAGN-NHVLCAGIDLNPA 101 (178)
T ss_pred cccccccCCCC-ceeEEecccCCHh
Confidence 35666667776 8999999999854
No 172
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=50.72 E-value=31 Score=30.68 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEE-----------cc
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-----------DG 74 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v-----------~G 74 (179)
...+++++..++-+-|+++|-.+.-|.-|--. ...-+++.+.++.||.||+| .|
T Consensus 353 l~v~erl~hr~dg~yvvvsgitptp~gegkst---------------~t~glvqal~~l~k~~iacvrqpsqgptfgvkg 417 (935)
T KOG4230|consen 353 LAVLERLKHRKDGKYVVVSGITPTPLGEGKST---------------TTAGLVQALGALGKLAIACVRQPSQGPTFGVKG 417 (935)
T ss_pred HHHHHHHhccCCCcEEEEeccCCCCCCCCcch---------------hHHHHHHHHHhhCCcceeeecCCCcCCcccccc
Confidence 35678888888889999999755445433211 12346777888999999997 35
Q ss_pred cccchhHH
Q 030339 75 AALGGGLE 82 (179)
Q Consensus 75 ~a~g~G~~ 82 (179)
.+.|||+.
T Consensus 418 gaagggys 425 (935)
T KOG4230|consen 418 GAAGGGYS 425 (935)
T ss_pred ccCCCccc
Confidence 55666653
No 173
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=50.44 E-value=50 Score=21.42 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHH-hcCCCcEEEEEcccc
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAA 76 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~ia~v~G~a 76 (179)
+++.++|.++-+++++.+|+++-. ..+.+...+..+ .....|+|..+-+.-
T Consensus 28 ee~~~~l~~l~~~~~~gIIii~e~-----------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 28 EEAEEALKELLKDEDVGIIIITED-----------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEHH-----------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHhcCCCccEEEeeHH-----------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 578889999998999988888754 122334444444 467999999996654
No 174
>PRK06490 glutamine amidotransferase; Provisional
Probab=49.97 E-value=32 Score=26.68 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 50 YVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+.....++++......+|++++.-|+
T Consensus 71 wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 71 FIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 44455667777778899999876554
No 175
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=47.28 E-value=32 Score=25.18 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
.....++++......+|+++...|+-
T Consensus 67 ~~~~~~~i~~~~~~~~pilgiC~G~q 92 (188)
T cd01741 67 LKKLKELIRQALAAGKPVLGICLGHQ 92 (188)
T ss_pred HHHHHHHHHHHHHCCCCEEEECccHH
Confidence 34556677777777899998877763
No 176
>PRK09065 glutamine amidotransferase; Provisional
Probab=45.32 E-value=33 Score=26.44 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 50 YVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+.....++++.+....+|+++..-|+
T Consensus 73 w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 73 WSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 44555667777777899999776664
No 177
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=43.95 E-value=89 Score=24.43 Aligned_cols=57 Identities=7% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcC-CCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 3 RGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 3 ~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
+.+..+++.+.+. +.+..||++|. ++...+. +.+..+.+.+..+++|+..+...+-.
T Consensus 40 ~~l~~~i~~i~~~~~~~D~vvitGD----l~~~~~~--------------~~~~~~~~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 40 ESYQAVLEAIRAQQHEFDLIVATGD----LAQDHSS--------------EAYQHFAEGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCC----CCCCCCH--------------HHHHHHHHHHhhcCCcEEEeCCCCCC
Confidence 4567777777543 56779999886 2221111 22334445566778898777766655
No 178
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=41.30 E-value=1.1e+02 Score=23.62 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEE---------cccccchhH
Q 030339 52 NTLRSTFSFLEALPIPTIAVI---------DGAALGGGL 81 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v---------~G~a~g~G~ 81 (179)
+.+.+.++.+...+||..-++ .|.|+|-|.
T Consensus 125 ~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~ 163 (262)
T KOG3040|consen 125 QRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGP 163 (262)
T ss_pred HHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchH
Confidence 566778888889998876665 578888764
No 179
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=40.85 E-value=27 Score=27.92 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeC
Q 030339 5 LKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
+...+..+..|+.||+|+++|+
T Consensus 8 ~~~Il~~A~~d~rIraV~l~GS 29 (282)
T PF04439_consen 8 MDLILEFAKQDERIRAVILNGS 29 (282)
T ss_dssp HHHHHHHHHH-TTEEEEEE---
T ss_pred HHHHHHHHhcCCcEEEEEEecC
Confidence 3455667779999999999997
No 180
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=40.10 E-value=1.1e+02 Score=20.22 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHH-HhcCCCcEEEEEcc
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDG 74 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~ia~v~G 74 (179)
+++.++|+++-.++++.+|++|-. ....+...++. +.+..+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~-----------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD-----------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh-----------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 467888998877888888888643 12233344444 66889999999975
No 181
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.93 E-value=1.2e+02 Score=25.69 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
++.++.+++++=+.|.+...+++|+++|+ .+...+...++..+....--..|+|+.=
T Consensus 55 tiG~lid~~~~g~~d~~n~~vlmt~TgGp---------------CRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 55 TIGQLIDAIESGEYDIENDAVLMTQTGGP---------------CRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred hHHHHHHHHHhCCccccccEEEEecCCCC---------------cchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 35678888888888988899999997554 3444555666666666666777887764
No 182
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=38.19 E-value=77 Score=25.29 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=16.7
Q ss_pred hcCCCceEEEEEeCCCCcccccc
Q 030339 13 SEDSSANVVMIRSSVPKVFCAGA 35 (179)
Q Consensus 13 ~~d~~v~~vvl~g~~~~~F~~G~ 35 (179)
-.+|+.++|++.|. |..|..|+
T Consensus 73 lA~Pd~~VV~i~GD-G~~f~ig~ 94 (279)
T PRK11866 73 WANPKLTVIGYGGD-GDGYGIGL 94 (279)
T ss_pred HHCCCCcEEEEECC-hHHHHccH
Confidence 34678899999998 55677665
No 183
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=37.42 E-value=39 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
+++.+.++.+.+|++|.+|++---
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCC
Confidence 578899999999999999999764
No 184
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=37.37 E-value=1.4e+02 Score=22.33 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcC-CCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 3 RGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 3 ~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
..+...++.+.+. +.+..||++|. .+.+.+. +.+..+.+.+...++|++.+.-.+=..
T Consensus 25 ~~l~~~~~~i~~~~~~~d~vi~~GD----l~~~~~~--------------~~~~~~~~~l~~~~~p~~~v~GNHD~~ 83 (240)
T cd07402 25 ASLEAVLAHINALHPRPDLVLVTGD----LTDDGSP--------------ESYERLRELLAALPIPVYLLPGNHDDR 83 (240)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECcc----CCCCCCH--------------HHHHHHHHHHhhcCCCEEEeCCCCCCH
Confidence 3566777777664 46678998876 2222111 112233344455688987766545443
No 185
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=37.36 E-value=1.4e+02 Score=24.81 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
+.+|.+.+.+.-.++++.+||||..
T Consensus 85 w~~la~~I~~~~~~~~~dGvVItHG 109 (351)
T COG0252 85 WLRLAEAINEALDDGDVDGVVITHG 109 (351)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCC
Confidence 3456666776666665556666543
No 186
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=37.08 E-value=34 Score=28.85 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCceEEEE--EeCCCCccccccCcccc--ccCc----hhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 3 RGLKHAFETISEDSSANVVMI--RSSVPKVFCAGADLKVL--QMSP----SEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl--~g~~~~~F~~G~D~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
+++..++.+++++. ++++|| ++++|+..+...++..+ +... ............ ...-...++|++..+|+
T Consensus 219 ~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~-~~~~~~~~~PlvvLvn~ 296 (406)
T COG0793 219 EDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFS-ASGEALYDGPLVVLVNE 296 (406)
T ss_pred HHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccc-cccccCCCCCEEEEECC
Confidence 46788999999887 788887 66656666666666543 1100 000000000000 00000468999999999
Q ss_pred cccchhHHHHh
Q 030339 75 AALGGGLEMAL 85 (179)
Q Consensus 75 ~a~g~G~~l~~ 85 (179)
...+++=.++-
T Consensus 297 ~SASAsEI~ag 307 (406)
T COG0793 297 GSASASEIFAG 307 (406)
T ss_pred CCccHHHHHHH
Confidence 88877633333
No 187
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.93 E-value=43 Score=29.42 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred hcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEE
Q 030339 13 SEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR 90 (179)
Q Consensus 13 ~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~ 90 (179)
.-.|++-|||-|-. .-=+-.|.+...+ ..+.+...+-+..+.+=++.+..+..|+|.++|-...----++.+..++.
T Consensus 319 gl~P~~~VlVaTvR-ALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~ 396 (557)
T PF01268_consen 319 GLKPDAVVLVATVR-ALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELC 396 (557)
T ss_dssp T---SEEEEEEEHH-HHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHC
T ss_pred ccCcceEEEeeech-HHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 34577666666553 1124556666555 33344455555555556777889999999999987776667777766554
No 188
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=36.59 E-value=1.4e+02 Score=24.15 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEe
Q 030339 3 RGLKHAFETISEDSSANVVMIRS 25 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g 25 (179)
.+|.+.+++.-++++..++|++.
T Consensus 63 ~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 63 LKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred HHHHHHHHHHhccCCCCEEEEec
Confidence 45556665543445555555554
No 189
>PLN03037 lipase class 3 family protein; Provisional
Probab=36.14 E-value=41 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEE
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRI 91 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~v 91 (179)
.++++++......+...=-.+.||.+||++....+.|+..
T Consensus 302 ~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 302 EEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred HHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHH
Confidence 3444444433333334444588999999999999988754
No 190
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=35.98 E-value=83 Score=25.48 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM 83 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l 83 (179)
.+...++++. +....++||||+ +-.. .++++ ..+.+++.+++..+.+..+|++ |.|.|.-+.+
T Consensus 87 ~~y~~~~~i~-~~~~DG~IITGA-p~e~---~~fed--------v~YW~El~~i~~w~~~~~~s~L----gICwGaQa~a 149 (302)
T PRK05368 87 NFYCTFEDIK-DEKFDGLIITGA-PVEQ---LPFED--------VDYWDELKEILDWAKTHVTSTL----FICWAAQAAL 149 (302)
T ss_pred HhccCHHHhc-cCCCCEEEEcCC-CCCC---ccCCC--------CchHHHHHHHHHHHHHcCCCEE----EEcHHHHHHH
Confidence 3444455554 457789999998 3211 11111 1223456666666667778887 4566555444
Q ss_pred Hhh
Q 030339 84 ALA 86 (179)
Q Consensus 84 ~~~ 86 (179)
-..
T Consensus 150 ~al 152 (302)
T PRK05368 150 YHL 152 (302)
T ss_pred HHc
Confidence 333
No 191
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=35.76 E-value=1.5e+02 Score=24.57 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
.+|.+.+++.-.+++...+|++..
T Consensus 91 ~~la~~I~~~~~~~~~~GiVVtHG 114 (349)
T TIGR00520 91 LKLAKGINELLASDDYDGIVITHG 114 (349)
T ss_pred HHHHHHHHHHhccCCCCEEEEeCC
Confidence 455566655555555566666543
No 192
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=34.64 E-value=80 Score=27.89 Aligned_cols=34 Identities=29% Similarity=0.646 Sum_probs=28.5
Q ss_pred CCCcEEEEEcccccch-hHHHHhhcCEEEEcCCce
Q 030339 64 LPIPTIAVIDGAALGG-GLEMALACDLRICGEAAL 97 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~-G~~l~~~~D~~va~~~a~ 97 (179)
+..-+|+.|+|+.+-- ||.+.+.|+++||+|.-.
T Consensus 349 lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL 383 (673)
T KOG0333|consen 349 LGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL 383 (673)
T ss_pred ccceEEEEecccchhhhhhhhhccceeeecCchHH
Confidence 3466899999999765 899999999999988644
No 193
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=33.97 E-value=2.5e+02 Score=22.67 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=25.9
Q ss_pred cEEEEEcccccchhHHHHhhcCEEEEcCCceeecccc
Q 030339 67 PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET 103 (179)
Q Consensus 67 p~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~ 103 (179)
|-+-..++.--+-=..+...||.+|.|+|+.=-..|.
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA 245 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEA 245 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHH
Confidence 4444446665666678999999999999976444444
No 194
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.82 E-value=53 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHhcCccccccCCChHHHHHHHHHHHHhc
Q 030339 139 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 139 ~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 169 (179)
+++.++| ++.|+++..-.++...++++..+
T Consensus 106 ~~l~~~G-~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 106 KKFKEMG-FDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHcC-CCEEECcCCCHHHHHHHHHHHhc
Confidence 5789999 89999877777777777666544
No 195
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=33.39 E-value=2.9e+02 Score=23.16 Aligned_cols=67 Identities=12% Similarity=0.296 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.++++.+.+||++++|++.-. .|.. ......+.+.+..+.. ..+||+++...|...-.+..
T Consensus 296 e~~~~aL~~ll~Dp~VdaVlv~i~------ggi~---------~~~~vA~~Ii~a~~~~-~~~kPvvv~l~G~~~e~~~~ 359 (392)
T PRK14046 296 ERVAKAFRLVLSDRNVKAILVNIF------AGIN---------RCDWVAEGVVQAAREV-GIDVPLVVRLAGTNVEEGRK 359 (392)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEcC------CCCC---------CHHHHHHHHHHHHHhc-CCCCcEEEEcCCCCHHHHHH
Confidence 456788999999999999997322 2211 0112222222222211 27899988887755545555
Q ss_pred HHh
Q 030339 83 MAL 85 (179)
Q Consensus 83 l~~ 85 (179)
+.-
T Consensus 360 iL~ 362 (392)
T PRK14046 360 ILA 362 (392)
T ss_pred HHH
Confidence 433
No 196
>PRK07053 glutamine amidotransferase; Provisional
Probab=32.59 E-value=60 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+....++++.+....+|++++.-|+
T Consensus 69 ~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 69 LAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred HHHHHHHHHHHHHCCCCEEEECccH
Confidence 4455667777778899999776654
No 197
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=32.54 E-value=56 Score=23.51 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC-CCCccccccCccc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKV 39 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~ 39 (179)
+..|...|..+++||++.-|-+|-. .+-.-|+|.-+..
T Consensus 27 C~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAG 65 (172)
T COG4032 27 CDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAG 65 (172)
T ss_pred HHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcC
Confidence 3567788999999999998888765 2445799987754
No 198
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.51 E-value=63 Score=23.91 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
...+.+.+..+..++||+||.++-.
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3567788889999999999999854
No 199
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=32.16 E-value=1.4e+02 Score=24.18 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=17.5
Q ss_pred HHHHhhcCCCceEEEEEeCCCCcccccc
Q 030339 8 AFETISEDSSANVVMIRSSVPKVFCAGA 35 (179)
Q Consensus 8 ~l~~~~~d~~v~~vvl~g~~~~~F~~G~ 35 (179)
++--.-.+|+.++|+++|. |..|..|.
T Consensus 79 AiGaklA~pd~~VV~i~GD-G~~~~mg~ 105 (301)
T PRK05778 79 ATGAKLANPDLEVIVVGGD-GDLASIGG 105 (301)
T ss_pred HHHHHHHCCCCcEEEEeCc-cHHHhccH
Confidence 3333345678899999998 55455543
No 200
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=32.15 E-value=78 Score=24.46 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcC-CCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc-ccchhH
Q 030339 4 GLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA-ALGGGL 81 (179)
Q Consensus 4 ~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~-a~g~G~ 81 (179)
...++|+++..+ .+|--||..+. -+.+.-|+|. .+++++.--|..-=..++|. |.||..
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~-TG~~~PglD~------------------~l~~~LgL~~~v~R~~i~~~GC~gg~~ 167 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSC-TGIAAPGLDA------------------RLINRLGLRPDVQRTPIFGMGCAGGAA 167 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEES-SSSECS-HHH------------------HHHHHHT--TTSEEEEEES-GGGHHHH
T ss_pred HHHHHHHHcCCCCcccceEEEEec-CCcCCCchhH------------------HHHhcCCCCCCcEEEEEeccchhhHHH
Confidence 455678877755 56666666665 3577888876 24455544444444455554 677778
Q ss_pred HHHhhcCEEEEcCCcee
Q 030339 82 EMALACDLRICGEAALL 98 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~ 98 (179)
.|..+.|+.-+.++++.
T Consensus 168 ~L~~A~~~~~~~p~a~V 184 (226)
T PF00195_consen 168 GLRRAKDIARANPGARV 184 (226)
T ss_dssp HHHHHHHHHHHSTT-EE
T ss_pred HHHHHHHHHhCCccceE
Confidence 89999998777677653
No 201
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=31.75 E-value=1.1e+02 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
+++..+|+.+.++|+++=|++||.
T Consensus 144 ~~~~~al~YIa~hPeI~eVllSGG 167 (369)
T COG1509 144 EEWDKALDYIAAHPEIREVLLSGG 167 (369)
T ss_pred HHHHHHHHHHHcCchhheEEecCC
Confidence 578899999999999999999986
No 202
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=30.87 E-value=1.6e+02 Score=24.43 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhc---CCCcEEEEEcccccchhHHHHh
Q 030339 9 FETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 9 l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
+.++.......++++.-. |=.+|.|. ..........+..++.+.. -+||.=-...|+.+|||..=..
T Consensus 163 ~~~~ak~~~aNvl~fNYp-GVg~S~G~---------~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~A 232 (365)
T PF05677_consen 163 IQRFAKELGANVLVFNYP-GVGSSTGP---------PSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEA 232 (365)
T ss_pred HHHHHHHcCCcEEEECCC-ccccCCCC---------CCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHH
Confidence 333444445566666554 34455544 2346667777778888864 4577777889999999986544
Q ss_pred hcC
Q 030339 86 ACD 88 (179)
Q Consensus 86 ~~D 88 (179)
..+
T Consensus 233 L~~ 235 (365)
T PF05677_consen 233 LKK 235 (365)
T ss_pred HHh
Confidence 444
No 203
>PRK13317 pantothenate kinase; Provisional
Probab=30.59 E-value=2.8e+02 Score=22.06 Aligned_cols=21 Identities=0% Similarity=-0.020 Sum_probs=13.9
Q ss_pred hhcCCCceEEEEEeCCCCccc
Q 030339 12 ISEDSSANVVMIRSSVPKVFC 32 (179)
Q Consensus 12 ~~~d~~v~~vvl~g~~~~~F~ 32 (179)
+....++.-+.+||.+...++
T Consensus 42 l~~~~~~~~i~~TG~g~~~~~ 62 (277)
T PRK13317 42 LINLQDIEKICLTGGKAGYLQ 62 (277)
T ss_pred hhccCCceEEEEECcchhhhh
Confidence 334456788999998555454
No 204
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=30.42 E-value=1.4e+02 Score=23.91 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=17.6
Q ss_pred HHHhhcCCCceEEEEEeCCCCcccccc
Q 030339 9 FETISEDSSANVVMIRSSVPKVFCAGA 35 (179)
Q Consensus 9 l~~~~~d~~v~~vvl~g~~~~~F~~G~ 35 (179)
+--.-..|+.++|+++|. |..|..|.
T Consensus 79 iGaklA~Pd~~VV~i~GD-G~~f~mg~ 104 (286)
T PRK11867 79 TGLKLANPDLTVIVVTGD-GDALAIGG 104 (286)
T ss_pred HHHHHhCCCCcEEEEeCc-cHHHhCCH
Confidence 333335678899999998 55576554
No 205
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=29.48 E-value=1.1e+02 Score=27.26 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEE
Q 030339 16 SSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR 90 (179)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~ 90 (179)
|+.-|+|-|-. --=+-.|.+...+ ..+-+...+-...+..=++.+..+..|+|.++|-...---.++....++.
T Consensus 388 P~a~VlVaTvR-ALK~hGG~~~~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~ 462 (625)
T PTZ00386 388 PDAAVLVATVR-ALKFHGGVEPVVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELA 462 (625)
T ss_pred cCEEEEEeehH-HHHHhCCCCccccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 55444444432 1113344444443 22222333333444445566778999999999988766666665554444
No 206
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=29.38 E-value=67 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEEccc
Q 030339 54 LRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+.++++.+....||+++...|+
T Consensus 61 ~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 61 LLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred HHHHHHHHHHCCCeEEEECHHH
Confidence 3456777778899999777665
No 207
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=29.04 E-value=1.7e+02 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
.+|.+.+.+.-.+..-.+||+.|+
T Consensus 139 ~~La~~I~~~~~~~~dGvVVtHGT 162 (419)
T PRK04183 139 VEIAEAVYEEIKNGADGVVVAHGT 162 (419)
T ss_pred HHHHHHHHHHhhccCCeEEEecCC
Confidence 455566655444322244444444
No 208
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=28.53 E-value=1.2e+02 Score=22.42 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEEcccccchhHHHHhhcCE
Q 030339 51 VNTLRSTFSFLEALP--IPTIAVIDGAALGGGLEMALACDL 89 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~--kp~ia~v~G~a~g~G~~l~~~~D~ 89 (179)
...+...+..+...+ .+-=..+-|+|.||.+.+.++++.
T Consensus 79 ~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 79 AADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 344455677777777 233445669999999999888764
No 209
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=28.15 E-value=92 Score=23.66 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCCcEEEEEcccccch
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
..+++.+...+.-+|+++.|.....
T Consensus 25 ~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 25 RELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp HHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred HHHHHHHhccCCCEEEEEEeCCHHH
Confidence 3344444444444444444444443
No 210
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=27.93 E-value=2.3e+02 Score=20.37 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA 95 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~ 95 (179)
..+.+.+.......+--|+.+=|.+.|..=.+.-.||.+++-..
T Consensus 83 ~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~ 126 (155)
T PF02590_consen 83 EEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSK 126 (155)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-S
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEec
Confidence 34455666667778888999999999999899999999886533
No 211
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=27.92 E-value=87 Score=24.51 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHh-cCCCcEEEE
Q 030339 19 NVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLE-ALPIPTIAV 71 (179)
Q Consensus 19 ~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kp~ia~ 71 (179)
.=|+||+.+.+.--.|+|+. +++.+. .++.|+||.
T Consensus 170 GEIlLtsmD~DGtk~GyDl~------------------l~~~v~~~v~iPvIAS 205 (256)
T COG0107 170 GEILLTSMDRDGTKAGYDLE------------------LTRAVREAVNIPVIAS 205 (256)
T ss_pred ceEEEeeecccccccCcCHH------------------HHHHHHHhCCCCEEec
Confidence 34566666555566666662 233333 588999985
No 212
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.87 E-value=1.2e+02 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 49 FYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 49 ~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
.+.....+.++.+....+|+.+...|+-
T Consensus 55 ~~~~~~~~~i~~~~~~~~PilgIC~G~q 82 (200)
T PRK13143 55 ENLSPLRDVILEAARSGKPFLGICLGMQ 82 (200)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 3444556667777788899998877663
No 213
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.81 E-value=1.2e+02 Score=23.35 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEEcccccchhHHHHhhcCE
Q 030339 51 VNTLRSTFSFLEALP--IPTIAVIDGAALGGGLEMALACDL 89 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~--kp~ia~v~G~a~g~G~~l~~~~D~ 89 (179)
...+...+..+...+ .+.=..+-|.|+||++.+.+++..
T Consensus 93 ~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 93 LADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 334444555555544 333345669999999999999987
No 214
>PRK11096 ansB L-asparaginase II; Provisional
Probab=27.50 E-value=1.9e+02 Score=23.88 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEe
Q 030339 3 RGLKHAFETISEDSSANVVMIRS 25 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g 25 (179)
.+|.+.+++ .+++...+|++.
T Consensus 88 ~~l~~~i~~--~~~~~dGiVVtH 108 (347)
T PRK11096 88 LTLAKKINT--DCDKTDGFVITH 108 (347)
T ss_pred HHHHHHHHH--hcCCCCEEEEeC
Confidence 345555555 234455555554
No 215
>PTZ00293 thymidine kinase; Provisional
Probab=27.30 E-value=1.8e+02 Score=22.22 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEE-----EcccccchhHHHHhhcCEEE
Q 030339 50 YVNTLRSTFSFLEALPIPTIAV-----IDGAALGGGLEMALACDLRI 91 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~-----v~G~a~g~G~~l~~~~D~~v 91 (179)
++..+..++..+....+|||++ ..|.-+++-..|...||.+.
T Consensus 88 Ff~~i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~ 134 (211)
T PTZ00293 88 FFPDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVT 134 (211)
T ss_pred hhHhHHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEEE
Confidence 3455777888888999999988 36888888899999999875
No 216
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=27.19 E-value=59 Score=27.50 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=23.0
Q ss_pred cccccCcccc-----ccCchhHHHHHHHHHHHHHHHh
Q 030339 31 FCAGADLKVL-----QMSPSEIHFYVNTLRSTFSFLE 62 (179)
Q Consensus 31 F~~G~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 62 (179)
||.|+|+..+ ..++.....++.++...++.++
T Consensus 90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~ 126 (429)
T KOG0595|consen 90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLH 126 (429)
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999988 2345667777777776666554
No 217
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=26.52 E-value=1.4e+02 Score=25.94 Aligned_cols=68 Identities=16% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEE-----------cc
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-----------DG 74 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v-----------~G 74 (179)
.+.++.++..++-|.|++|+-++.-+.-|=-.... -|.+.+.+..|++|+++ .|
T Consensus 40 ~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTtti---------------GL~~al~~lgK~~i~alRePSlGP~fGiKG 104 (554)
T COG2759 40 LEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTI---------------GLVDALNKLGKKAIIALREPSLGPVFGIKG 104 (554)
T ss_pred HHHHHhhccCCCceEEEEEecCCCCCCCCcceeee---------------hHHHHHHhcCchheEEeccCCcCCcccccc
Q ss_pred cccchhHHHHhhcC
Q 030339 75 AALGGGLEMALACD 88 (179)
Q Consensus 75 ~a~g~G~~l~~~~D 88 (179)
.+.|||+....-.|
T Consensus 105 GAaGGGyaqv~Pme 118 (554)
T COG2759 105 GAAGGGYAQVLPME 118 (554)
T ss_pred ccCCCceeeeeehh
No 218
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.02 E-value=2.1e+02 Score=22.53 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEE
Q 030339 7 HAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAV 71 (179)
Q Consensus 7 ~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~ 71 (179)
+.+++++.- +.-+++|.-+.+.-..|.|++ .++++.+ ..+.|+||.
T Consensus 162 e~~~~~~~~--~~~il~TdI~rDGtl~G~dle--------------l~~~l~~---~~~ipVIAS 207 (253)
T TIGR02129 162 ETLEELSKY--CDEFLIHAADVEGLCKGIDEE--------------LVSKLGE---WSPIPITYA 207 (253)
T ss_pred HHHHHHHhh--CCEEEEeeecccCccccCCHH--------------HHHHHHh---hCCCCEEEE
Confidence 455555554 788899887677788899883 2233333 367888875
No 219
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=25.81 E-value=1.7e+02 Score=25.97 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=42.9
Q ss_pred cCCCceEEEEEeCCCCccccccCcc--------cc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHH
Q 030339 14 EDSSANVVMIRSSVPKVFCAGADLK--------VL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 84 (179)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~D~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~ 84 (179)
-.|+.-|+|-|-. .-=+-.|.+.. ++ ..+-+...+-...+.+=++.+..+..|+|.++|-...---.++.
T Consensus 342 l~P~a~VlVaTvR-ALK~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~ 420 (587)
T PRK13507 342 LKPDCAVIVATIR-ALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIA 420 (587)
T ss_pred CCCCEEEEEeEhH-HHHHcCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHH
Confidence 3477656665543 11134455443 22 11222233333344444566778999999999988766666776
Q ss_pred hhcCEE
Q 030339 85 LACDLR 90 (179)
Q Consensus 85 ~~~D~~ 90 (179)
+..++.
T Consensus 421 ~l~~~~ 426 (587)
T PRK13507 421 IVRRLA 426 (587)
T ss_pred HHHHHH
Confidence 665554
No 220
>PRK07567 glutamine amidotransferase; Provisional
Probab=25.78 E-value=2e+02 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCcEEEEEccc
Q 030339 54 LRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+.++++......+|+++..-|+
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhH
Confidence 4455666668899998777664
No 221
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.56 E-value=1.6e+02 Score=21.69 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCcEEEEEccc
Q 030339 55 RSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~ 75 (179)
..+++.+....+|+++...|.
T Consensus 90 ~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 90 LALLRAALERGKPILGICRGM 110 (189)
T ss_pred HHHHHHHHHCCCCEEEEcchH
Confidence 345666667789999877775
No 222
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=25.52 E-value=3e+02 Score=20.84 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
+++.+.++.+.. ++.+||++|.
T Consensus 29 ~~i~~~~~~~~~--~~D~viiaGD 50 (232)
T cd07393 29 EKIKENWDNVVA--PEDIVLIPGD 50 (232)
T ss_pred HHHHHHHHhcCC--CCCEEEEcCC
Confidence 445555555553 4568999876
No 223
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=25.50 E-value=3.3e+02 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCceEEEE
Q 030339 3 RGLKHAFETISEDSSANVVMI 23 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl 23 (179)
+.+.++++.+.+||++++|++
T Consensus 296 ~~~~~al~~l~~dp~vd~ilv 316 (386)
T TIGR01016 296 ERVREALKLVLSDKSVKVVFI 316 (386)
T ss_pred HHHHHHHHHHHcCCCCCEEEE
Confidence 456788999999999999996
No 224
>PLN02408 phospholipase A1
Probab=25.01 E-value=90 Score=26.01 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEcccccchhHHHHhhcCEEE
Q 030339 71 VIDGAALGGGLEMALACDLRI 91 (179)
Q Consensus 71 ~v~G~a~g~G~~l~~~~D~~v 91 (179)
.+.||.+||.+....+.|+.-
T Consensus 203 ~vTGHSLGGALAtLaA~dl~~ 223 (365)
T PLN02408 203 TITGHSLGAALATLTAYDIKT 223 (365)
T ss_pred EEeccchHHHHHHHHHHHHHH
Confidence 488999999999999998864
No 225
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=24.97 E-value=2.7e+02 Score=20.10 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEc
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG 93 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~ 93 (179)
+.+.+.......+.-|+.+=|.+.|..-.+---||.+++-
T Consensus 85 fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSL 124 (157)
T PRK00103 85 FAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSL 124 (157)
T ss_pred HHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEe
Confidence 3444555556666678888899999998888889988863
No 226
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=24.93 E-value=1.2e+02 Score=22.54 Aligned_cols=23 Identities=4% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCCCceEEEEEeCC
Q 030339 5 LKHAFETISEDSSANVVMIRSSV 27 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~ 27 (179)
+...+..+-.+|++|.+|+.|.-
T Consensus 55 IEKvI~NvisNpnIRflilcG~E 77 (176)
T PF04208_consen 55 IEKVIANVISNPNIRFLILCGSE 77 (176)
T ss_pred HHHHHHHHhcCCCceEEEEecCc
Confidence 55677788899999999999983
No 227
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=24.84 E-value=19 Score=20.52 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=15.6
Q ss_pred cccCHHHHHHHHhcCCCcCHHHHHhcCccccc
Q 030339 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 150 (179)
Q Consensus 119 ~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v 150 (179)
-.+| ..+ ++++.|+++.++...+.|+.=+.
T Consensus 8 l~lG-e~a-~lll~~q~v~P~kL~~~GF~F~~ 37 (48)
T PF08338_consen 8 LLLG-EMA-ELLLASQRVSPKKLLEAGFQFRY 37 (48)
T ss_dssp -------G-GGGG-EEEE--HHHHHTT---S-
T ss_pred HHHH-HHH-HHHhCCCeecChHHHHCCCcccC
Confidence 3456 455 89999999999999999987665
No 228
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=24.57 E-value=2.6e+02 Score=23.31 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCCcEEEEEcccccchhHHHHhhc-CEEEEcCCceeeccccc-ccccCCc
Q 030339 64 LPIPTIAVIDGAALGGGLEMALAC-DLRICGEAALLGLPETG-LAIIPGA 111 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~-D~~va~~~a~~~~p~~~-~G~~p~~ 111 (179)
.+.|+.+.+.+...|.-.....-. ...-+-++..+..|..+ +|+.|..
T Consensus 240 ~~lpv~~l~D~DP~G~~I~~tyk~GS~~~a~~s~~l~~P~~kwlGl~~sD 289 (367)
T PRK04342 240 LGLPVYVFTDGDPWGYYIYSVVKYGSIKLAHLSERLATPDAKFIGVTPSD 289 (367)
T ss_pred cCCCEEEEECCCccHHHHHHHHHhCchhhhhhhhhccCCCCEEecCcHHH
Confidence 479999999999987642222111 11112233345666665 4776643
No 229
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=24.53 E-value=2.3e+02 Score=23.14 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 030339 3 RGLKHAFET 11 (179)
Q Consensus 3 ~~l~~~l~~ 11 (179)
.+|.+.+++
T Consensus 65 ~~la~~I~~ 73 (336)
T TIGR00519 65 VEIAEAVKK 73 (336)
T ss_pred HHHHHHHHH
Confidence 344455544
No 230
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.10 E-value=2.7e+02 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030339 3 RGLKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
.+|.+.+.+.-.++.-.+||+.|+
T Consensus 126 ~~La~~I~~~~~~~~dGvVVtHGT 149 (404)
T TIGR02153 126 IKIAEAVAKALKEGADGVVVAHGT 149 (404)
T ss_pred HHHHHHHHHHhhcCCCcEEEecCC
Confidence 455555655443323245555554
No 231
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=24.09 E-value=2.6e+02 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCceEEEEEeC
Q 030339 5 LKHAFETISEDSSANVVMIRSS 26 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~ 26 (179)
|-.++...-.+|+-++|.+.|.
T Consensus 68 lpaAiGa~~a~p~r~VV~i~GD 89 (235)
T cd03376 68 IEAALKALGRGKDITVVAFAGD 89 (235)
T ss_pred HHHHHHHhccCCCCeEEEEEcC
Confidence 3445554455677789999997
No 232
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=23.64 E-value=2.5e+02 Score=25.89 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc-ccccchh
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAALGGG 80 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~-G~a~g~G 80 (179)
+.++.+.++. .+ .+||..|.....-+-|.|...+.... .-.++++.+....||+|.+++ |..+-..
T Consensus 492 ~~~a~~~A~~-aD-~vIv~vg~~~~~~~E~~Dr~~l~Lp~--------~Q~~Li~~v~~~~~~vVvVl~~g~P~~l~ 558 (765)
T PRK15098 492 IDEAVQAAKQ-AD-VVVAVVGEAQGMAHEASSRTDITIPQ--------SQRDLIAALKATGKPLVLVLMNGRPLALV 558 (765)
T ss_pred HHHHHHHHhc-CC-EEEEEEcCCCCccccCCCcccccCCH--------HHHHHHHHHHHhCcCEEEEEeCCceeecc
Confidence 4455554443 34 35555554222234456665542111 223466667677889998877 7665543
No 233
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=23.45 E-value=1.1e+02 Score=24.58 Aligned_cols=14 Identities=43% Similarity=0.926 Sum_probs=10.4
Q ss_pred EEeCCCCccccccCc
Q 030339 23 IRSSVPKVFCAGADL 37 (179)
Q Consensus 23 l~g~~~~~F~~G~D~ 37 (179)
+... +++||.|.|-
T Consensus 5 ~lA~-prGFCaGV~R 18 (294)
T COG0761 5 LLAK-PRGFCAGVDR 18 (294)
T ss_pred EEec-CCccchhHHH
Confidence 3344 7999999965
No 234
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.43 E-value=3e+02 Score=22.46 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.++..-.+. ..||+.|+-++.+.. +.+.++++.+....+.+|.-..|.++
T Consensus 118 ~~l~~~~~~l~~~--d~VvlsGSlP~g~~~------------------d~y~~li~~~~~~g~~vilD~Sg~~L 171 (310)
T COG1105 118 QFLEQLKALLESD--DIVVLSGSLPPGVPP------------------DAYAELIRILRQQGAKVILDTSGEAL 171 (310)
T ss_pred HHHHHHHHhcccC--CEEEEeCCCCCCCCH------------------HHHHHHHHHHHhcCCeEEEECChHHH
Confidence 4444444433333 369999975554432 33455666666777777777777665
No 235
>PRK14053 methyltransferase; Provisional
Probab=23.37 E-value=1.3e+02 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADL 37 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~ 37 (179)
+...+..+-.+|++|.+|+.|.-.+..-+|--+
T Consensus 52 IEKvI~NvisNpNIRflilcG~Ev~GHltGqsL 84 (194)
T PRK14053 52 VEKIIVNVISNSNIRYVLLCGGESRGHLAGHSL 84 (194)
T ss_pred HHHHHHHhhcCCCceEEEEecCccCCccccHHH
Confidence 456677788999999999999843344444433
No 236
>smart00463 SMR Small MutS-related domain.
Probab=23.22 E-value=1.8e+02 Score=17.87 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCC-ceEEEEEeCC
Q 030339 2 LRGLKHAFETISEDSS-ANVVMIRSSV 27 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~-v~~vvl~g~~ 27 (179)
+..|.+.|+.+..... -.+.||+|.|
T Consensus 15 ~~~l~~~l~~~~~~~~~~~~~II~G~G 41 (80)
T smart00463 15 LTALDKFLNNARLKGLEQKLVIITGKG 41 (80)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3567777887777765 5789999983
No 237
>PRK08250 glutamine amidotransferase; Provisional
Probab=22.88 E-value=1.3e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCcEEEEEccc
Q 030339 55 RSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~ 75 (179)
.++++.+....||++++..|+
T Consensus 74 ~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 74 QRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred HHHHHHHHHcCCCEEEEChhH
Confidence 455666667899999887765
No 238
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=22.62 E-value=1.5e+02 Score=25.88 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=35.1
Q ss_pred CCcccc------ccCcccc-----ccCchhHHHHHHHHHHHHHHHhcCCCcEEE---------EEcccccch
Q 030339 28 PKVFCA------GADLKVL-----QMSPSEIHFYVNTLRSTFSFLEALPIPTIA---------VIDGAALGG 79 (179)
Q Consensus 28 ~~~F~~------G~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia---------~v~G~a~g~ 79 (179)
.+.||+ |.|+.-+ .+...+....+..+.+.+..+...+-|+|- .++|.+.|.
T Consensus 540 tdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGe 611 (775)
T KOG1151|consen 540 TDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGE 611 (775)
T ss_pred cccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccce
Confidence 455664 7777644 234556666666777777777777778765 478988875
No 239
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=22.11 E-value=1.1e+02 Score=19.68 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=10.6
Q ss_pred CCceEEEEEeCCCCcc
Q 030339 16 SSANVVMIRSSVPKVF 31 (179)
Q Consensus 16 ~~v~~vvl~g~~~~~F 31 (179)
.+++-|+||++||.++
T Consensus 21 ~~v~~i~lTASGGpFr 36 (84)
T PF08436_consen 21 EEVEKIILTASGGPFR 36 (84)
T ss_dssp CTEEEEEEEE--STTT
T ss_pred cccCEEEEECcchhhC
Confidence 4699999999955543
No 240
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=21.98 E-value=2.2e+02 Score=21.98 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
++...+..+.+..++..||++|. -..-.|.+.. ....+.+.+.+++..+. .+.|++++...|-.+++
T Consensus 19 ~~~~~~~~~~~~~~~dfvv~~GD--~~y~~g~~~~-------~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~ 85 (277)
T cd07378 19 AVAKAMAKVAAELGPDFILSLGD--NFYDDGVGSV-------DDPRFETTFEDVYSAPS-LQVPWYLVLGNHDYSGN 85 (277)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCC--ccccCCCCCC-------cchHHHHHHHHHccchh-hcCCeEEecCCcccCCC
Confidence 56666666666567788998875 2223333221 11122223333333332 68899999988877654
No 241
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=21.79 E-value=1.4e+02 Score=23.10 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADL 37 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~ 37 (179)
+...+..+-.||++|.+|+.|.-.+..-+|--+
T Consensus 59 IEKvIaNvisNpNIRflilcG~Ev~GHltGqsL 91 (238)
T TIGR01111 59 IEKVVANIISNPNIRFLILCGSEVQGHITGQSF 91 (238)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccCccccHHH
Confidence 456677788999999999999843344444433
No 242
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.69 E-value=4.3e+02 Score=21.19 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.++++.+. .+.+|++-|+.|.+++- +.++..+ +.+.+.....-+.|+|+-+.+....-..+
T Consensus 25 ~a~~~lv~~li~~-Gv~gi~~~GttGE~~~L---------s~eEr~~----v~~~~v~~~~grvpviaG~g~~~t~eai~ 90 (299)
T COG0329 25 EALRRLVEFLIAA-GVDGLVVLGTTGESPTL---------TLEERKE----VLEAVVEAVGGRVPVIAGVGSNSTAEAIE 90 (299)
T ss_pred HHHHHHHHHHHHc-CCCEEEECCCCccchhc---------CHHHHHH----HHHHHHHHHCCCCcEEEecCCCcHHHHHH
Confidence 4566667766666 47899998886654442 1222222 23344455567889999999888777777
Q ss_pred HHhhc
Q 030339 83 MALAC 87 (179)
Q Consensus 83 l~~~~ 87 (179)
++-.+
T Consensus 91 lak~a 95 (299)
T COG0329 91 LAKHA 95 (299)
T ss_pred HHHHH
Confidence 66543
No 243
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=21.44 E-value=1.5e+02 Score=23.06 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCcEEEEEccc
Q 030339 55 RSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~ 75 (179)
..+++.....++|+.+...|.
T Consensus 97 ~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 97 MALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHCCCCEEEECHhH
Confidence 356777777899999888775
No 244
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.43 E-value=1.1e+02 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=20.6
Q ss_pred HHHHhcCccccccCCChHHHHHHHHHHH
Q 030339 139 KDAMSLGLVNYYVPAGQAQLKALEIAQE 166 (179)
Q Consensus 139 ~~a~~~Glv~~v~~~~~~~~~a~~~a~~ 166 (179)
+++.++| +++++++..-.++..++.++
T Consensus 104 ~~l~~~G-v~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 104 KRFKEMG-FDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHcC-CCEEECcCCCHHHHHHHHHH
Confidence 3578899 89999877777777776665
No 245
>PLN02310 triacylglycerol lipase
Probab=21.37 E-value=1.3e+02 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.6
Q ss_pred EEEcccccchhHHHHhhcCEE
Q 030339 70 AVIDGAALGGGLEMALACDLR 90 (179)
Q Consensus 70 a~v~G~a~g~G~~l~~~~D~~ 90 (179)
-.+.||.+||++....+.|+.
T Consensus 211 I~vTGHSLGGALAtLaA~dl~ 231 (405)
T PLN02310 211 LTVTGHSLGGALALLNAYEAA 231 (405)
T ss_pred EEEEcccHHHHHHHHHHHHHH
Confidence 457899999999988888864
No 246
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.35 E-value=2.4e+02 Score=21.03 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=15.8
Q ss_pred cCCCceEEEEEeCCCCcccccc
Q 030339 14 EDSSANVVMIRSSVPKVFCAGA 35 (179)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~ 35 (179)
++|..-++|+++ |+.-|+|.
T Consensus 50 ~ePk~a~LIF~S--GK~VcTGa 69 (185)
T COG2101 50 EEPKTAALIFRS--GKVVCTGA 69 (185)
T ss_pred cCCcceEEEEec--CcEEEecc
Confidence 456777888876 69999998
No 247
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.34 E-value=3.6e+02 Score=21.13 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEE
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAV 71 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~ 71 (179)
+.+..+++++. .+..+++|--.-..-++|.|+. .+.++... ...|+|++
T Consensus 149 ~~~l~~~~~~~-g~~~ii~TdI~~DGtl~G~n~~--------------l~~~l~~~---~~ipviaS 197 (241)
T COG0106 149 LEELAKRLEEV-GLAHILYTDISRDGTLSGPNVD--------------LVKELAEA---VDIPVIAS 197 (241)
T ss_pred HHHHHHHHHhc-CCCeEEEEecccccccCCCCHH--------------HHHHHHHH---hCcCEEEe
Confidence 34445555444 5678888887677889999883 33444443 38888764
No 248
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=21.02 E-value=4.8e+02 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEE
Q 030339 3 RGLKHAFETISEDSSANVVMIR 24 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~ 24 (179)
+.+.++++.+.+||++.+|++.
T Consensus 296 e~~~~aL~~l~~d~~vd~vlv~ 317 (388)
T PRK00696 296 ERVAEAFKIILSDPNVKAILVN 317 (388)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE
Confidence 3567888999999999999864
No 249
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=20.95 E-value=1.5e+02 Score=22.92 Aligned_cols=31 Identities=6% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCcccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGA 35 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~ 35 (179)
+...+..+-.+|++|.+|+.|.-.+..-+|-
T Consensus 59 IEKvI~NvisNpNIRflilcG~Ev~GH~tGq 89 (225)
T PRK00964 59 IEKVIANVISNPNIRFLILCGSEVQGHITGQ 89 (225)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCccccH
Confidence 5567777889999999999998334333343
No 250
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=20.89 E-value=1e+02 Score=25.13 Aligned_cols=41 Identities=29% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEc
Q 030339 53 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG 93 (179)
Q Consensus 53 ~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~ 93 (179)
.+.+.++++...-+-.--.+.||..||.+....+.|++.--
T Consensus 156 ~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~i~~~~ 196 (336)
T KOG4569|consen 156 GLDAELRRLIELYPNYSIWVTGHSLGGALASLAALDLVKNG 196 (336)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHHHHHcC
Confidence 34444444444333666678999999999999999987654
No 251
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=20.71 E-value=1.4e+02 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEe
Q 030339 3 RGLKHAFETISEDSSANVVMIRS 25 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g 25 (179)
+++.++|+++-+++++.+|++|-
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite 52 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITE 52 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcH
Confidence 47788899888888988888764
No 252
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.67 E-value=2e+02 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEEccc
Q 030339 54 LRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
+.+.++.+..-.||++++.+|.
T Consensus 78 l~~~Ik~f~~~gkpVLGICnG~ 99 (261)
T PRK01175 78 LRKDIEEFIDEGYPIIGICNGF 99 (261)
T ss_pred HHHHHHHHHHCCCeEEEECHHH
Confidence 3345666777899999998776
No 253
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.33 E-value=3.1e+02 Score=21.33 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=40.8
Q ss_pred cCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEc
Q 030339 14 EDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG 93 (179)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~ 93 (179)
.||+ .+|+-= =|+|+|+.. ...+++.+.++.+-.+.+|-.-+=. -++...||.+|.-
T Consensus 150 h~P~--i~vlDE-----P~sGLDi~~-----------~r~~~dfi~q~k~egr~viFSSH~m-----~EvealCDrvivl 206 (245)
T COG4555 150 HDPS--ILVLDE-----PTSGLDIRT-----------RRKFHDFIKQLKNEGRAVIFSSHIM-----QEVEALCDRVIVL 206 (245)
T ss_pred cCCC--eEEEcC-----CCCCccHHH-----------HHHHHHHHHHhhcCCcEEEEecccH-----HHHHHhhheEEEE
Confidence 4554 566532 288999843 3566777888888788776554322 5788899999876
Q ss_pred CCce
Q 030339 94 EAAL 97 (179)
Q Consensus 94 ~~a~ 97 (179)
....
T Consensus 207 h~Ge 210 (245)
T COG4555 207 HKGE 210 (245)
T ss_pred ecCc
Confidence 5544
Done!