Query 030340
Match_columns 179
No_of_seqs 142 out of 1049
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 1.2E-74 2.7E-79 475.5 21.7 177 2-178 11-187 (188)
2 PRK01250 inorganic pyrophospha 100.0 4E-72 8.6E-77 456.7 20.4 171 1-171 1-175 (176)
3 PRK00642 inorganic pyrophospha 100.0 2.6E-71 5.7E-76 461.1 21.0 172 2-173 11-204 (205)
4 PRK02230 inorganic pyrophospha 100.0 5.5E-67 1.2E-71 428.7 19.7 159 14-172 3-162 (184)
5 cd00412 pyrophosphatase Inorga 100.0 7E-67 1.5E-71 418.5 17.7 154 14-167 1-155 (155)
6 PLN02707 Soluble inorganic pyr 100.0 7.8E-66 1.7E-70 441.9 19.7 174 2-176 59-258 (267)
7 PF00719 Pyrophosphatase: Inor 100.0 2.5E-66 5.4E-71 415.6 15.4 155 17-171 1-156 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 6.6E-65 1.4E-69 412.5 17.8 170 1-171 1-171 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 7.7E-56 1.7E-60 375.8 14.3 176 2-177 30-235 (279)
10 KOG1626 Inorganic pyrophosphat 76.7 2.3 4.9E-05 37.4 2.8 30 2-31 40-70 (279)
11 cd05694 S1_Rrp5_repeat_hs2_sc2 55.4 8.8 0.00019 26.7 1.8 28 55-92 30-57 (74)
12 COG1094 Predicted RNA-binding 53.6 28 0.00061 29.3 4.8 110 26-167 37-163 (194)
13 PF07177 Neuralized: Neuralize 43.4 23 0.0005 24.6 2.4 22 70-91 30-51 (69)
14 PF13333 rve_2: Integrase core 42.0 19 0.00042 23.2 1.7 34 134-170 2-35 (52)
15 smart00588 NEUZ domain in neur 35.2 48 0.001 25.4 3.2 45 66-114 27-71 (123)
16 PTZ00162 DNA-directed RNA poly 33.9 92 0.002 25.3 4.9 61 52-118 103-171 (176)
17 cd01460 vWA_midasin VWA_Midasi 32.8 19 0.00042 31.3 0.8 26 114-139 238-263 (266)
18 cd05695 S1_Rrp5_repeat_hs3 S1_ 32.8 36 0.00077 22.8 2.0 32 56-93 26-57 (66)
19 PF07469 DUF1518: Domain of un 30.9 26 0.00057 24.1 1.0 15 48-62 18-32 (58)
20 PF14259 RRM_6: RNA recognitio 30.2 51 0.0011 21.3 2.4 39 128-166 11-60 (70)
21 KOG1110 Putative steroid membr 29.7 29 0.00064 28.9 1.3 38 103-141 108-145 (183)
22 PF15232 DUF4585: Domain of un 29.6 57 0.0012 23.5 2.6 24 17-40 19-42 (75)
23 TIGR01659 sex-lethal sex-letha 29.5 2.3E+02 0.005 25.4 7.1 87 81-167 131-257 (346)
24 PF09476 Pilus_CpaD: Pilus bio 29.4 1.6E+02 0.0035 24.4 5.7 33 122-154 52-84 (203)
25 COG4050 Uncharacterized protei 29.0 87 0.0019 24.9 3.8 20 13-32 58-77 (152)
26 KOG2407 GPI transamidase compl 27.8 62 0.0014 31.2 3.2 41 10-57 416-458 (575)
27 cd05706 S1_Rrp5_repeat_sc10 S1 27.6 58 0.0013 21.6 2.3 16 77-92 46-61 (73)
28 PF00575 S1: S1 RNA binding do 27.3 48 0.001 21.9 1.9 34 55-92 29-62 (74)
29 PF00076 RRM_1: RNA recognitio 27.3 1E+02 0.0022 19.3 3.4 39 128-166 11-60 (70)
30 smart00362 RRM_2 RNA recogniti 27.1 1.3E+02 0.0029 18.1 3.9 38 128-165 12-59 (72)
31 PF04113 Gpi16: Gpi16 subunit, 26.5 1E+02 0.0023 29.7 4.6 41 10-57 432-474 (564)
32 PF10309 DUF2414: Protein of u 24.8 1.3E+02 0.0029 20.6 3.7 44 117-163 9-60 (62)
33 PF14829 GPAT_N: Glycerol-3-ph 23.2 65 0.0014 23.3 1.9 20 123-142 26-45 (77)
34 COG1430 Uncharacterized conser 22.8 76 0.0016 24.8 2.4 29 2-32 83-111 (126)
35 PF09608 Alph_Pro_TM: Putative 22.6 1.4E+02 0.003 25.6 4.2 43 54-97 25-69 (236)
36 PF05182 Fip1: Fip1 motif; In 22.5 23 0.00051 23.0 -0.4 10 53-62 24-33 (45)
37 smart00360 RRM RNA recognition 22.4 1.9E+02 0.004 17.3 4.3 39 128-166 9-59 (71)
38 PF07065 D123: D123; InterPro 22.0 1.4E+02 0.003 26.5 4.2 55 71-138 151-206 (299)
39 PF10447 EXOSC1: Exosome compo 20.6 69 0.0015 23.1 1.7 21 70-91 61-81 (82)
40 COG4447 Uncharacterized protei 20.6 2.2E+02 0.0049 25.8 5.1 63 40-107 82-164 (339)
41 PF07765 KIP1: KIP1-like prote 20.1 65 0.0014 23.1 1.4 18 125-142 52-69 (74)
42 COG0612 PqqL Predicted Zn-depe 20.1 1E+02 0.0022 27.7 3.0 52 120-171 174-225 (438)
43 PF08006 DUF1700: Protein of u 20.1 1.1E+02 0.0024 24.3 3.0 44 121-164 14-62 (181)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=1.2e-74 Score=475.47 Aligned_cols=177 Identities=86% Similarity=1.368 Sum_probs=174.1
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCC
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLP 81 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~ 81 (179)
|||+||+|++.|+.||||||||+||++|||+|+++|.|++||++++++.||||||||||||++||||||||||++.|+.|
T Consensus 11 ~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~~~ 90 (188)
T PLN02373 11 PWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLP 90 (188)
T ss_pred ccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEEEEecCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCCCceeEeccccCHHHHHHH
Q 030340 82 GSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEA 161 (179)
Q Consensus 82 G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~legK~~~~~~~~~~~~A~~~ 161 (179)
|++++|||||+|+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.+|||++.++||.|+++|+++
T Consensus 91 G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g~~~~~~A~~~ 170 (188)
T PLN02373 91 GCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPAEAAIEA 170 (188)
T ss_pred ceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 030340 162 IKYSMDLYASYIVESLR 178 (179)
Q Consensus 162 I~~~~~~~~~~~~~~~~ 178 (179)
|++|+++|++++.+.++
T Consensus 171 I~~~~~~y~~~~~~~~~ 187 (188)
T PLN02373 171 IQYSMDLYAEYIVESLR 187 (188)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999887664
No 2
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4e-72 Score=456.70 Aligned_cols=171 Identities=44% Similarity=0.724 Sum_probs=167.9
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEeccccc
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 79 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~-~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~ 79 (179)
|.||++|+|++.|+.|||||||||||+ +|||+|+++|.+++||++++++.||||||||||||++||||||||||++.++
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 789999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 030340 80 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 156 (179)
Q Consensus 80 ~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~ 156 (179)
.|||+++|||||+|+|+|+||.|||||||+.+ ||+|++|++++|||++++++|+|||++||.++ ||++++.+|.|++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 79999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 030340 157 AAIEAIKYSMDLYAS 171 (179)
Q Consensus 157 ~A~~~I~~~~~~~~~ 171 (179)
+|+++|++||++|++
T Consensus 161 ~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 161 EAKAEIVEAIERAKK 175 (176)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=2.6e-71 Score=461.14 Aligned_cols=172 Identities=41% Similarity=0.637 Sum_probs=166.9
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccC------------------
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC------------------ 63 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~------------------ 63 (179)
|||+||++++.|+.|||||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 11 pwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~~~~~~~ 90 (205)
T PRK00642 11 PWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQSGREDIK 90 (205)
T ss_pred ccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCcccccccccccccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCceeEEEecccccCCeeE-EEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccC
Q 030340 64 EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKN 142 (179)
Q Consensus 64 ~DgDPLDvlvl~~~~~~~G~v-~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~l 142 (179)
|||||||||||++.|++||++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++++++|+|||++||.+
T Consensus 91 gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~l 170 (205)
T PRK00642 91 GDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYFLTYKAT 170 (205)
T ss_pred CCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHHHHHcCc
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---ceeEeccccCHHHHHHHHHHHHHHHHHHH
Q 030340 143 EN---KKVDVEDFLPAEAAIEAIKYSMDLYASYI 173 (179)
Q Consensus 143 eg---K~~~~~~~~~~~~A~~~I~~~~~~~~~~~ 173 (179)
+| |++.++||.++++|+++|++||++|++++
T Consensus 171 egk~~k~~~~~g~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 171 PGELIKGVEIVGIYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred ccCCCCeEEECCCcCHHHHHHHHHHHHHHHHHhh
Confidence 95 45899999999999999999999999875
No 4
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=5.5e-67 Score=428.71 Aligned_cols=159 Identities=42% Similarity=0.699 Sum_probs=155.4
Q ss_pred CeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCeeEEEEEEeeeE
Q 030340 14 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 93 (179)
Q Consensus 14 ~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l 93 (179)
+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++|||||||+|||+.|+.||++++||+||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCCCcee-EeccccCHHHHHHHHHHHHHHHHHH
Q 030340 94 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKV-DVEDFLPAEAAIEAIKYSMDLYASY 172 (179)
Q Consensus 94 ~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~legK~~-~~~~~~~~~~A~~~I~~~~~~~~~~ 172 (179)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+++|+++
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998776 6999999999999999999999876
No 5
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=7e-67 Score=418.52 Aligned_cols=154 Identities=53% Similarity=0.920 Sum_probs=150.9
Q ss_pred CeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCeeEEEEEEeeeE
Q 030340 14 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 93 (179)
Q Consensus 14 ~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l 93 (179)
+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++|||||||||||+.|++|||+++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCCC-ceeEeccccCHHHHHHHHHHHHH
Q 030340 94 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNEN-KKVDVEDFLPAEAAIEAIKYSMD 167 (179)
Q Consensus 94 ~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~leg-K~~~~~~~~~~~~A~~~I~~~~~ 167 (179)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++| |++++.+|.|+++|+++|++||+
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~~ 155 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999996 88999999999999999999984
No 6
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=7.8e-66 Score=441.94 Aligned_cols=174 Identities=30% Similarity=0.458 Sum_probs=164.5
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCCceEEEecC--CCCeEeeeecccCCcCcc----ccccccccc-------------
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKA--SGLIKVDRVLYSSVVYPH----NYGFIPRTI------------- 62 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~--~g~i~~Dr~l~~~~~yP~----NYGfIP~T~------------- 62 (179)
|||+||++ +.+++|||||||||||++|||+|++ .+.|+|||.++..+.||+ |||||||||
T Consensus 59 pwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~~l 137 (267)
T PLN02707 59 PWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGA 137 (267)
T ss_pred chhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECCCcCccccccccccccCccccccccccc
Confidence 89999999 6799999999999999999999976 578999999988888887 999999997
Q ss_pred CCCCCceeEEEecccccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhH---HHHHHHHHHHh
Q 030340 63 CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHR---LAEIRRFFEDY 139 (179)
Q Consensus 63 ~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~---l~~i~~fF~~Y 139 (179)
+|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++. +++|+|||++|
T Consensus 138 ~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~Y 217 (267)
T PLN02707 138 FGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDY 217 (267)
T ss_pred CCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred ccCCCceeEe----ccccCHHHHHHHHHHHHHHHHHHHHHH
Q 030340 140 KKNENKKVDV----EDFLPAEAAIEAIKYSMDLYASYIVES 176 (179)
Q Consensus 140 K~legK~~~~----~~~~~~~~A~~~I~~~~~~~~~~~~~~ 176 (179)
|.++||++++ ++|.|+++|+++|++||++|++++...
T Consensus 218 K~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~ 258 (267)
T PLN02707 218 KIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRS 258 (267)
T ss_pred cCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999876 579999999999999999999998744
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=2.5e-66 Score=415.58 Aligned_cols=155 Identities=54% Similarity=0.904 Sum_probs=147.3
Q ss_pred EEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCeeEEEEEEeeeEEee
Q 030340 17 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMI 96 (179)
Q Consensus 17 ~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l~m~ 96 (179)
|||||||+||++|||+|+++|.+++||++++++.||+|||||||||++|||||||+|||+.|+.||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccC-CCceeEeccccCHHHHHHHHHHHHHHHHH
Q 030340 97 DQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKN-ENKKVDVEDFLPAEAAIEAIKYSMDLYAS 171 (179)
Q Consensus 97 D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~l-egK~~~~~~~~~~~~A~~~I~~~~~~~~~ 171 (179)
|+||+|||||||+.+||+|++|++++|++++.+++|+|||++||.+ +||++.+++|.++++|+++|++||++|++
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERYKK 156 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999999999986
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=6.6e-65 Score=412.52 Aligned_cols=170 Identities=49% Similarity=0.796 Sum_probs=167.0
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccC
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 80 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~ 80 (179)
|+||++|.+++. ..+||+||||+||++|||+|+++|.+.+||++++++.||+|||||||||++|||||||+|++++|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 799999999987 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHH
Q 030340 81 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 159 (179)
Q Consensus 81 ~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~A~ 159 (179)
|||+++||+||+|+|+|+||.|||||||+..||+|++|++++|++.+++++|+|||++||.+| ||++++.||+|+++|.
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHH
Q 030340 160 EAIKYSMDLYAS 171 (179)
Q Consensus 160 ~~I~~~~~~~~~ 171 (179)
++|++|+++|++
T Consensus 160 ~~i~~~~~~~k~ 171 (171)
T COG0221 160 KEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHHHhhC
Confidence 999999999974
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=7.7e-56 Score=375.80 Aligned_cols=176 Identities=39% Similarity=0.567 Sum_probs=160.2
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCCceEEEecC-----------CCCeEeeeecccCCcCcccccccccccC-------
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKA-----------SGLIKVDRVLYSSVVYPHNYGFIPRTIC------- 63 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~-----------~g~i~~Dr~l~~~~~yP~NYGfIP~T~~------- 63 (179)
||||+|+..+.-..+|||+||||++++|+|+.++ +|.++++|.+|++..||+|||||||||+
T Consensus 30 ~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~fp~~gYiwNYGalPqTwedP~~~~~ 109 (279)
T KOG1626|consen 30 PFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGYIWNYGALPQTWEDPNHVDP 109 (279)
T ss_pred ccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEecccccccccccccCcccccCCCcccc
Confidence 8999999988789999999999999999999854 4778888999999999999999999997
Q ss_pred -----CCCCceeEEEecccccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCC---CCCCCCCCCCChhHHHHHHHH
Q 030340 64 -----EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE---FRHYKDIKELPPHRLAEIRRF 135 (179)
Q Consensus 64 -----~DgDPLDvlvl~~~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~---~~~i~~i~dl~~~~l~~i~~f 135 (179)
|||||||||+||+.+..+||+++||+||+|+||||||+|||||||.++||. |.+|+|++.++|++|+++++|
T Consensus 110 ~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnDP~A~~~ndi~DV~~~~Pg~L~~tr~w 189 (279)
T KOG1626|consen 110 ETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVNDPLASEYNDIEDVEKLFPGLLEATRRW 189 (279)
T ss_pred cccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCCcchhhhccHHHHHHhCcchHHHHHHH
Confidence 577999999999999999999999999999999999999999999999995 555555566789999999999
Q ss_pred HHHhccCCCc----eeEeccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 030340 136 FEDYKKNENK----KVDVEDFLPAEAAIEAIKYSMDLYASYIVESL 177 (179)
Q Consensus 136 F~~YK~legK----~~~~~~~~~~~~A~~~I~~~~~~~~~~~~~~~ 177 (179)
|+.||.++|| ++..+.|.+++.|.++|++||+.|++|+.+++
T Consensus 190 Fr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 190 FRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred HHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999966655 46677899999999999999999999998765
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=76.70 E-value=2.3 Score=37.37 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=27.4
Q ss_pred ccccCCCCCCCCCeeEEEEeeC-CCCCceEE
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIG-KGGKVKYE 31 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP-~gs~~KyE 31 (179)
+||++..+.+.|..+|+++||. +++.++|+
T Consensus 40 ~~~~~nmvvEiPrwtnak~EIs~k~~~~pik 70 (279)
T KOG1626|consen 40 PWHDLNMVVEIPRWTNAKMEISKKEPFNPIK 70 (279)
T ss_pred ccccEeecccccceeeeEEEEeccCCCCcce
Confidence 6999999999999999999999 78888776
No 11
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=55.36 E-value=8.8 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=21.5
Q ss_pred ccccccccCCCCCceeEEEecccccCCeeEEEEEEeee
Q 030340 55 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 92 (179)
Q Consensus 55 YGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~ 92 (179)
=||||.+--.++ ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 488887754443 5689999999999866
No 12
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=53.56 E-value=28 Score=29.27 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=80.7
Q ss_pred CCceEEEecCCCCeEeeeecccCCcC----------cccccccccc---cCCCCCceeEEEecccccCCee---EEEEEE
Q 030340 26 GKVKYELDKASGLIKVDRVLYSSVVY----------PHNYGFIPRT---ICEDSDPMDVLVLMQEPVLPGS---FLRCRA 89 (179)
Q Consensus 26 s~~KyE~d~~~g~i~~Dr~l~~~~~y----------P~NYGfIP~T---~~~DgDPLDvlvl~~~~~~~G~---v~~~rv 89 (179)
...|.++|.++|.+.+...-.+.-++ =..=||=|.- |-.|+=-|||+.|+.....++. .++.|+
T Consensus 37 ~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~~LL~d~~~levIdi~~~~~~~~~~l~R~kgRI 116 (194)
T COG1094 37 TGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGRI 116 (194)
T ss_pred cCeEEEEECCCCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEEEEEHHHhccCchhhhhHhhcee
Confidence 44788899999988776642211111 1255666643 3467889999999986555555 455777
Q ss_pred eeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCCCceeEe-ccccCHHHHHHHHHHHHH
Q 030340 90 IGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDV-EDFLPAEAAIEAIKYSMD 167 (179)
Q Consensus 90 iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~legK~~~~-~~~~~~~~A~~~I~~~~~ 167 (179)
||- .-.++..|+..=..|-..-|++|.+ .++.+.+.|++.|+-+++
T Consensus 117 IG~--------------------------------~GkTr~~IE~lt~~~I~V~g~tVaiiG~~~~v~iAr~AVemli~ 163 (194)
T COG1094 117 IGR--------------------------------EGKTRRAIEELTGVYISVYGKTVAIIGGFEQVEIAREAVEMLIN 163 (194)
T ss_pred eCC--------------------------------CchHHHHHHHHhCCeEEEeCcEEEEecChhhhHHHHHHHHHHHc
Confidence 774 1367889999999999999999977 469999999999999876
No 13
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=43.42 E-value=23 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.8
Q ss_pred eEEEecccccCCeeEEEEEEee
Q 030340 70 DVLVLMQEPVLPGSFLRCRAIG 91 (179)
Q Consensus 70 Dvlvl~~~~~~~G~v~~~rviG 91 (179)
..||+++.|+.+|+.+.+|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4689999999999999999853
No 14
>PF13333 rve_2: Integrase core domain
Probab=41.98 E-value=19 Score=23.16 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHHHhccCCCceeEeccccCHHHHHHHHHHHHHHHH
Q 030340 134 RFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 170 (179)
Q Consensus 134 ~fF~~YK~legK~~~~~~~~~~~~A~~~I~~~~~~~~ 170 (179)
.||.+.|.- .+.-..|.+.+++.+.|.+-++.|+
T Consensus 2 sff~~lK~E---~~~~~~~~t~eel~~~I~~YI~~yN 35 (52)
T PF13333_consen 2 SFFGTLKTE---MLYRQKFKTREELKQAIDEYIDYYN 35 (52)
T ss_pred cchHhhcch---hcCCcccchHHHHHHHHHHHHHHhc
Confidence 578777742 2223378899999999999998774
No 15
>smart00588 NEUZ domain in neuralized proteins.
Probab=35.25 E-value=48 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCceeEEEecccccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCC
Q 030340 66 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 114 (179)
Q Consensus 66 gDPLDvlvl~~~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~ 114 (179)
.+.-+.+|+++.|+.+|+.+.+|+.-.-..- .-.=-+++-..||.
T Consensus 27 ~~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~ 71 (123)
T smart00588 27 SDFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPA 71 (123)
T ss_pred CCcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCcc
Confidence 3457889999999999999999987442110 00112467777885
No 16
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=33.86 E-value=92 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=34.9
Q ss_pred cccccccccccCCCCCcee-----EEEec---ccccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCC
Q 030340 52 PHNYGFIPRTICEDSDPMD-----VLVLM---QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 118 (179)
Q Consensus 52 P~NYGfIP~T~~~DgDPLD-----vlvl~---~~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i 118 (179)
|++ +|||..+-.|+=--| -...+ ...+..|+.+++|++|+- .|++ +-+.++ ...+|-.+.+
T Consensus 103 p~~-ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~~ 171 (176)
T PTZ00162 103 PLK-AFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGPI 171 (176)
T ss_pred CeE-EEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCcc
Confidence 677 788766533211111 12222 245788999999999993 3443 356666 4445544444
No 17
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=32.79 E-value=19 Score=31.35 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHh
Q 030340 114 EFRHYKDIKELPPHRLAEIRRFFEDY 139 (179)
Q Consensus 114 ~~~~i~~i~dl~~~~l~~i~~fF~~Y 139 (179)
-|--++|+++||.-+-+.+++||+.-
T Consensus 238 Yy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 238 YYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred eEEEecChhHhHHHHHHHHHHHHHHH
Confidence 34556888899988999999999754
No 18
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=32.78 E-value=36 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=21.3
Q ss_pred cccccccCCCCCceeEEEecccccCCeeEEEEEEeeeE
Q 030340 56 GFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 93 (179)
Q Consensus 56 GfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l 93 (179)
||+|.+.-.+. ... ...+..|+.++||++++-
T Consensus 26 g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~id 57 (66)
T cd05695 26 GTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYVD 57 (66)
T ss_pred EEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEEe
Confidence 67776654321 111 455899999999999773
No 19
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=30.94 E-value=26 Score=24.06 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=12.0
Q ss_pred CCcCccccccccccc
Q 030340 48 SVVYPHNYGFIPRTI 62 (179)
Q Consensus 48 ~~~yP~NYGfIP~T~ 62 (179)
-+.||-|||..+|+=
T Consensus 18 qFpyppnyGm~qq~d 32 (58)
T PF07469_consen 18 QFPYPPNYGMSQQPD 32 (58)
T ss_pred ccccCCCCCccCCCC
Confidence 457888999998763
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=30.17 E-value=51 Score=21.29 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccCC------C-----ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------N-----KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------g-----K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
..++|.+||+.|-..+ + +...+..|.+.++|.++++..+
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 4578999999984221 1 3456678999999999988764
No 21
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=29.72 E-value=29 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhcc
Q 030340 103 DKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK 141 (179)
Q Consensus 103 ~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~ 141 (179)
.+.||...-|. -+.+.|++||.+..++.+.+|..+||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 34445444443 456678999999999999999999984
No 22
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=29.63 E-value=57 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.3
Q ss_pred EEEEeeCCCCCceEEEecCCCCeE
Q 030340 17 NCVVEIGKGGKVKYELDKASGLIK 40 (179)
Q Consensus 17 ~~viEIP~gs~~KyE~d~~~g~i~ 40 (179)
.++||.|+--+.|.=+|++||.-.
T Consensus 19 Yy~vd~P~Qp~~k~lfDPETGqYV 42 (75)
T PF15232_consen 19 YYVVDAPVQPKTKTLFDPETGQYV 42 (75)
T ss_pred EEEEecCCCcceeeeecCCCCcEE
Confidence 678999999999999999999743
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=29.48 E-value=2.3e+02 Score=25.41 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=53.3
Q ss_pred CeeEEEEEEe-----------eeEEeeeCC------------CCccEEEEEecCCCCCCCCCC----CCCCChh-HHHHH
Q 030340 81 PGSFLRCRAI-----------GLMPMIDQG------------EKDDKIIAVCADDPEFRHYKD----IKELPPH-RLAEI 132 (179)
Q Consensus 81 ~G~v~~~rvi-----------G~l~m~D~g------------e~D~KiiaV~~~dp~~~~i~~----i~dl~~~-~l~~i 132 (179)
-|.|..||++ |.+.+.|.. +...|-|-|....|....+++ +..||.. .-++|
T Consensus 131 ~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L 210 (346)
T TIGR01659 131 IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQL 210 (346)
T ss_pred cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHH
Confidence 3888888885 666665543 234566666544332222222 1345543 34678
Q ss_pred HHHHHHhccC----------CCc--eeEeccccCHHHHHHHHHHHHH
Q 030340 133 RRFFEDYKKN----------ENK--KVDVEDFLPAEAAIEAIKYSMD 167 (179)
Q Consensus 133 ~~fF~~YK~l----------egK--~~~~~~~~~~~~A~~~I~~~~~ 167 (179)
+++|..|-.. .|+ -+.+..|.+.++|.+.|+....
T Consensus 211 ~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 211 DTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred HHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 9999998643 222 3667789999999988887554
No 24
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=29.40 E-value=1.6e+02 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.3
Q ss_pred CCCChhHHHHHHHHHHHhccCCCceeEeccccC
Q 030340 122 KELPPHRLAEIRRFFEDYKKNENKKVDVEDFLP 154 (179)
Q Consensus 122 ~dl~~~~l~~i~~fF~~YK~legK~~~~~~~~~ 154 (179)
.-|.+...+.|+.||..|...-+..+.+.-..+
T Consensus 52 ~~Lt~~q~~~l~~f~~~~~~~~~~~v~i~~psg 84 (203)
T PF09476_consen 52 GGLTPSQRDRLRGFASRYGRRGGGRVTIDVPSG 84 (203)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCeEEEecCCC
Confidence 347889999999999999988777788876654
No 25
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.04 E-value=87 Score=24.88 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.0
Q ss_pred CCeeEEEEeeCCCCCceEEE
Q 030340 13 PAVCNCVVEIGKGGKVKYEL 32 (179)
Q Consensus 13 p~~~~~viEIP~gs~~KyE~ 32 (179)
-+.=++-||+|.|-+.++.+
T Consensus 58 ~GLkYAAvEVPsGVRGRmal 77 (152)
T COG4050 58 RGLKYAAVEVPSGVRGRMAL 77 (152)
T ss_pred ccceeeEEecCCCccceeee
Confidence 46678999999999999875
No 26
>KOG2407 consensus GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=27.81 E-value=62 Score=31.24 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=33.5
Q ss_pred CCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCc--ccccc
Q 030340 10 PGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYP--HNYGF 57 (179)
Q Consensus 10 ~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP--~NYGf 57 (179)
...|....+-.+||.++.++.-++=+..++++|. || +|=||
T Consensus 416 r~~p~~lE~~~~lPa~t~~~vsi~fdk~lL~~~E-------YPPDANhGf 458 (575)
T KOG2407|consen 416 REAPTLLEIKMKLPANTSCEVSIQFDKALLRLDE-------YPPDANHGF 458 (575)
T ss_pred ccCCceeEEEEEcCCCceEEEEEEchhhhhhhhh-------CCCCCCCCc
Confidence 3579999999999999999998887777777765 44 67776
No 27
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=27.64 E-value=58 Score=21.57 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=13.4
Q ss_pred cccCCeeEEEEEEeee
Q 030340 77 EPVLPGSFLRCRAIGL 92 (179)
Q Consensus 77 ~~~~~G~v~~~rviG~ 92 (179)
..+.+|+.++|+++.+
T Consensus 46 ~~~~~Gd~v~~~V~~~ 61 (73)
T cd05706 46 YKFKKNDIVRACVLSV 61 (73)
T ss_pred cccCCCCEEEEEEEEE
Confidence 3478899999999886
No 28
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=27.31 E-value=48 Score=21.92 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=20.9
Q ss_pred ccccccccCCCCCceeEEEecccccCCeeEEEEEEeee
Q 030340 55 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 92 (179)
Q Consensus 55 YGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~ 92 (179)
-||||.+--.+. -..-....+..|+.++|+++++
T Consensus 29 ~g~ip~~~l~~~----~~~~~~~~~~~G~~v~v~v~~v 62 (74)
T PF00575_consen 29 EGFIPISELSDD----RIDDPSEVYKIGQTVRVKVIKV 62 (74)
T ss_dssp EEEEEGGGSSSS----EESSSHGTCETTCEEEEEEEEE
T ss_pred EEEEEeehhcCc----cccccccccCCCCEEEEEEEEE
Confidence 377887754443 1111123467788999999887
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=27.25 E-value=1e+02 Score=19.30 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le---------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
..++|+++|+.|-... | +...+-.|.+.++|.+++++..
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 4678999999987642 2 2245668899999998887653
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=27.08 E-value=1.3e+02 Score=18.08 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCC------C----ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------N----KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------g----K~~~~~~~~~~~~A~~~I~~~ 165 (179)
..++|++||+.|-... . +...+..|.+.+.|.+.++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh
Confidence 4578899999885321 1 245566788999998887644
No 31
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=26.51 E-value=1e+02 Score=29.72 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCc--ccccc
Q 030340 10 PGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYP--HNYGF 57 (179)
Q Consensus 10 ~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP--~NYGf 57 (179)
...|..+++.+.||..|.....++=+...++. .-|| +|-||
T Consensus 432 r~rp~~lE~~l~lP~~st~~~s~~f~K~~L~~-------~EyPpDAnrGf 474 (564)
T PF04113_consen 432 RKRPTHLELVLTLPPNSTVTLSIDFDKAFLRY-------TEYPPDANRGF 474 (564)
T ss_pred cCCCceEEEEEEECCCceEEEEEEEEeeeech-------hhCCCCcccCc
Confidence 35799999999999999977776644334433 3455 68887
No 32
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=24.75 E-value=1.3e+02 Score=20.62 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=29.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhccCCCc----ee---Ee-ccccCHHHHHHHHH
Q 030340 117 HYKDIKELPPHRLAEIRRFFEDYKKNENK----KV---DV-EDFLPAEAAIEAIK 163 (179)
Q Consensus 117 ~i~~i~dl~~~~l~~i~~fF~~YK~legK----~~---~~-~~~~~~~~A~~~I~ 163 (179)
|++-+++|. -+.|++||..|-..++. |+ ++ .=|.+.+.|.+.+.
T Consensus 9 hirGvd~ls---T~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 9 HIRGVDELS---TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALV 60 (62)
T ss_pred EEEcCCCCC---HHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHH
Confidence 455667776 68899999999444331 22 12 25888888887764
No 33
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=23.19 E-value=65 Score=23.33 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=17.2
Q ss_pred CCChhHHHHHHHHHHHhccC
Q 030340 123 ELPPHRLAEIRRFFEDYKKN 142 (179)
Q Consensus 123 dl~~~~l~~i~~fF~~YK~l 142 (179)
.||+++...++++|.+||..
T Consensus 26 kLP~~va~gmeelY~NYk~A 45 (77)
T PF14829_consen 26 KLPANVAAGMEELYQNYKNA 45 (77)
T ss_dssp SS-HHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHH
Confidence 58999999999999999964
No 34
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=22.77 E-value=76 Score=24.83 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=19.9
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCCceEEE
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGKVKYEL 32 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~ 32 (179)
||+.-+... +.-++.|+|.|+|...++-+
T Consensus 83 P~~~~~~~~--~~~~~yvLEl~~G~~~~~~i 111 (126)
T COG1430 83 PWSTYPCKS--YGPVRYVLELPAGWAARLGI 111 (126)
T ss_pred ccccCCCCC--CCCccEEEEecCCchhhcCC
Confidence 565555544 33348999999999887643
No 35
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=22.55 E-value=1.4e+02 Score=25.61 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=29.3
Q ss_pred ccccccccc-CCCCCceeEEEecccccCCeeE-EEEEEeeeEEeee
Q 030340 54 NYGFIPRTI-CEDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMID 97 (179)
Q Consensus 54 NYGfIP~T~-~~DgDPLDvlvl~~~~~~~G~v-~~~rviG~l~m~D 97 (179)
=||.||+.- ..++.|.||+|.-..|-.+=.+ -+-|+.| |+|.-
T Consensus 25 ifGai~~~~~~~~~~~~dVvV~v~GP~~~v~vrrK~r~~G-iWiN~ 69 (236)
T PF09608_consen 25 IFGAIPRPDPRPSGQPYDVVVVVEGPPQPVTVRRKERVFG-IWINT 69 (236)
T ss_pred EEEeccCcccCCcCCCCCEEEEEECCCCceEEEEcceeee-EEEec
Confidence 478887642 2344499998887777766553 4488888 68863
No 36
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=22.49 E-value=23 Score=23.05 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=9.1
Q ss_pred cccccccccc
Q 030340 53 HNYGFIPRTI 62 (179)
Q Consensus 53 ~NYGfIP~T~ 62 (179)
|||||=..||
T Consensus 24 FNYGf~E~tW 33 (45)
T PF05182_consen 24 FNYGFNEETW 33 (45)
T ss_pred cCCCCCHHHH
Confidence 8999998887
No 37
>smart00360 RRM RNA recognition motif.
Probab=22.44 E-value=1.9e+02 Score=17.29 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------------gK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-+.|++||+.|-... .+...+..|.+.+.|.+.++..+
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 3567889998876321 12255667889999988876543
No 38
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=22.01 E-value=1.4e+02 Score=26.47 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=41.4
Q ss_pred EEEecc-cccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 030340 71 VLVLMQ-EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 138 (179)
Q Consensus 71 vlvl~~-~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~ 138 (179)
.|+|-. ..+.|....+|=| .+.+|+||...|. ..+..+.++-..+.+.|..||..
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV-----------~~~~LiaISQr~~--~~~~~L~~~~~~I~~~I~~F~~~ 206 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFV-----------RNRKLIAISQRDL--NYYDFLEELKEEIRSKIQEFFEE 206 (299)
T ss_pred EEEEeccccCCccceEEEEE-----------ECCEEEEEecccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 355543 5677888888876 6899999999886 45556666667889999999954
No 39
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=20.62 E-value=69 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=12.3
Q ss_pred eEEEecccccCCeeEEEEEEee
Q 030340 70 DVLVLMQEPVLPGSFLRCRAIG 91 (179)
Q Consensus 70 Dvlvl~~~~~~~G~v~~~rviG 91 (179)
|=+.+. ..+.||.+++||||-
T Consensus 61 Dkv~~~-~~FrpGDIVrA~ViS 81 (82)
T PF10447_consen 61 DKVKMY-DCFRPGDIVRARVIS 81 (82)
T ss_dssp ----GG-GT--SSSEEEEEEEE
T ss_pred chhhHH-hccCCCCEEEEEEee
Confidence 333444 568999999999984
No 40
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=20.57 E-value=2.2e+02 Score=25.78 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=45.1
Q ss_pred EeeeecccCCcCccccccccc-------------ccC-------CCCCceeEEEecccccCCeeEEEEEEeeeEEeeeCC
Q 030340 40 KVDRVLYSSVVYPHNYGFIPR-------------TIC-------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 99 (179)
Q Consensus 40 ~~Dr~l~~~~~yP~NYGfIP~-------------T~~-------~DgDPLDvlvl~~~~~~~G~v~~~rviG~l~m~D~g 99 (179)
.++|-.+.+.+|=.+=|.||. ||+ --|-|+++..+.+. .|..+-. .|++--.++|
T Consensus 82 ~~gr~~f~sv~f~~~egw~vGe~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q---~g~m~gd--~Gail~T~Dg 156 (339)
T COG4447 82 FLGRHAFHSVSFLGMEGWIVGEPSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQ---RGEMLGD--QGAILKTTDG 156 (339)
T ss_pred hhhhhheeeeeeecccccccCCcceEEEecCCCcchhhchhhcCCCCCcceeEEecch---hhhhhcc--cceEEEecCC
Confidence 345666777777777788874 332 47899999988874 4444444 7888888899
Q ss_pred CCccEEEE
Q 030340 100 EKDDKIIA 107 (179)
Q Consensus 100 e~D~Kiia 107 (179)
+..||=+.
T Consensus 157 Gk~Wk~l~ 164 (339)
T COG4447 157 GKNWKALV 164 (339)
T ss_pred cccHhHhc
Confidence 88888654
No 41
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=20.14 E-value=65 Score=23.12 Aligned_cols=18 Identities=17% Similarity=0.565 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHhccC
Q 030340 125 PPHRLAEIRRFFEDYKKN 142 (179)
Q Consensus 125 ~~~~l~~i~~fF~~YK~l 142 (179)
.|.++.-+++||+.|..|
T Consensus 52 Rp~Li~~vee~yr~YrsL 69 (74)
T PF07765_consen 52 RPELISLVEEFYRSYRSL 69 (74)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 478999999999999865
No 42
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=20.12 E-value=1e+02 Score=27.69 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=43.8
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCCceeEeccccCHHHHHHHHHHHHHHHHH
Q 030340 120 DIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYAS 171 (179)
Q Consensus 120 ~i~dl~~~~l~~i~~fF~~YK~legK~~~~~~~~~~~~A~~~I~~~~~~~~~ 171 (179)
+.+.+..-.++.+++|++.|=.+++-.+.+.|=-+.+++.+.+++.-..|+.
T Consensus 174 ~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 174 TEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 4455666679999999999999999998888888999999999988777764
No 43
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.07 E-value=1.1e+02 Score=24.34 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHHHHHHhcc---CCCcee--EeccccCHHHHHHHHHH
Q 030340 121 IKELPPHRLAEIRRFFEDYKK---NENKKV--DVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 121 i~dl~~~~l~~i~~fF~~YK~---legK~~--~~~~~~~~~~A~~~I~~ 164 (179)
++++|+..++++.++|+.|=+ .+|++- .+.+.+++++.-+.|..
T Consensus 14 L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 14 LKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999986 346652 34567777665555544
Done!