Query 030340
Match_columns 179
No_of_seqs 142 out of 1049
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 1.4E-76 4.9E-81 482.4 15.4 174 1-174 2-175 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 1.4E-74 5E-79 476.2 18.5 171 1-171 22-196 (196)
3 3fq3_A Inorganic pyrophosphata 100.0 3.4E-74 1.2E-78 474.3 20.0 171 1-171 22-196 (197)
4 2prd_A Pyrophosphate phosphohy 100.0 3.9E-74 1.3E-78 466.7 19.6 171 1-171 1-174 (174)
5 2au7_A Inorganic pyrophosphata 100.0 1.5E-73 5.3E-78 463.5 20.7 170 2-171 1-174 (175)
6 3ld3_A Inorganic pyrophosphata 100.0 8.6E-74 2.9E-78 472.5 18.8 171 1-171 22-196 (199)
7 2bqx_A Inorganic pyrophosphata 100.0 6.9E-74 2.4E-78 464.9 17.6 170 1-171 1-173 (173)
8 3d53_A Inorganic pyrophosphata 100.0 2.3E-73 7.8E-78 461.8 18.7 167 1-168 2-172 (173)
9 3tr4_A Inorganic pyrophosphata 100.0 3E-72 1E-76 456.9 17.7 167 4-171 6-176 (178)
10 1qez_A Ppase, S-ppase, protein 100.0 5.6E-72 1.9E-76 453.7 18.7 167 5-171 2-171 (173)
11 1sxv_A Inorganic pyrophosphata 100.0 6.7E-70 2.3E-74 440.9 15.8 159 13-171 10-169 (172)
12 1e9g_A Ppase, inorganic pyroph 100.0 1.3E-67 4.5E-72 455.7 13.2 176 1-176 27-233 (286)
13 2l76_A Nfatc2-interacting prot 47.6 22 0.00076 25.5 4.0 65 9-76 15-94 (95)
14 1why_A Hypothetical protein ri 39.4 34 0.0012 22.6 3.9 38 128-165 30-73 (97)
15 3goe_A DNA repair protein RAD6 38.1 27 0.00091 24.6 3.1 53 15-73 9-81 (82)
16 2cqb_A Peptidyl-prolyl CIS-tra 38.1 37 0.0013 22.5 3.9 38 128-165 25-74 (102)
17 2cqh_A IGF-II mRNA-binding pro 37.9 40 0.0014 22.0 4.0 39 128-166 21-65 (93)
18 3bs9_A Nucleolysin TIA-1 isofo 36.5 36 0.0012 21.8 3.5 39 128-166 19-69 (87)
19 2e5j_A Methenyltetrahydrofolat 36.4 54 0.0018 21.6 4.5 38 128-165 32-76 (97)
20 2ku7_A MLL1 PHD3-CYP33 RRM chi 36.3 43 0.0015 23.4 4.1 37 128-164 76-124 (140)
21 2hvz_A Splicing factor, argini 36.1 68 0.0023 21.2 5.0 39 128-166 13-58 (101)
22 1jo6_A KCNMB2, potassium large 35.8 3.5 0.00012 26.0 -1.6 21 51-71 2-33 (45)
23 1x5s_A Cold-inducible RNA-bind 35.5 57 0.002 21.5 4.5 39 128-166 25-75 (102)
24 2dgt_A RNA-binding protein 30; 35.3 54 0.0019 21.3 4.3 38 128-165 23-64 (92)
25 2dha_A FLJ20171 protein; RRM d 34.3 40 0.0014 24.3 3.8 38 127-164 35-87 (123)
26 3mdf_A Peptidyl-prolyl CIS-tra 33.1 34 0.0012 21.8 2.9 37 129-165 21-69 (85)
27 2cqc_A Arginine/serine-rich sp 32.4 48 0.0016 21.5 3.6 38 128-165 28-77 (95)
28 2x1f_A MRNA 3'-END-processing 31.8 58 0.002 21.4 4.0 38 128-165 15-64 (96)
29 1wf1_A RNA-binding protein RAL 31.4 30 0.001 23.5 2.6 38 128-165 41-82 (110)
30 2hzc_A Splicing factor U2AF 65 31.2 51 0.0017 21.0 3.6 35 128-162 19-70 (87)
31 3p5t_L Cleavage and polyadenyl 31.0 56 0.0019 21.3 3.8 38 128-165 14-65 (90)
32 2dgp_A Bruno-like 4, RNA bindi 30.6 69 0.0024 21.3 4.3 39 128-166 26-76 (106)
33 2dgs_A DAZ-associated protein 30.1 43 0.0015 22.1 3.1 36 128-163 23-70 (99)
34 2ywk_A Putative RNA-binding pr 30.0 38 0.0013 22.1 2.8 38 128-165 29-77 (95)
35 2la6_A RNA-binding protein FUS 29.9 45 0.0015 22.1 3.2 38 128-165 26-83 (99)
36 2dnz_A Probable RNA-binding pr 29.7 56 0.0019 21.2 3.6 39 128-166 18-68 (95)
37 1x4a_A Splicing factor, argini 29.4 56 0.0019 22.0 3.7 39 128-166 35-82 (109)
38 3md1_A Nuclear and cytoplasmic 29.1 49 0.0017 20.9 3.1 38 128-165 14-63 (83)
39 2cph_A RNA binding motif prote 28.8 75 0.0026 21.1 4.2 38 128-165 28-78 (107)
40 1x5u_A Splicing factor 3B subu 28.8 59 0.002 21.6 3.7 37 128-164 28-76 (105)
41 2xnq_A Nuclear polyadenylated 28.7 48 0.0016 22.2 3.2 38 128-165 36-77 (97)
42 2dgu_A Heterogeneous nuclear r 28.5 53 0.0018 21.9 3.4 38 128-165 24-65 (103)
43 2ek1_A RNA-binding protein 12; 28.4 42 0.0014 21.9 2.8 38 128-165 28-77 (95)
44 2kvi_A Nuclear polyadenylated 28.3 50 0.0017 21.8 3.2 38 128-165 24-65 (96)
45 2dh8_A DAZ-associated protein 28.3 42 0.0014 22.4 2.8 37 128-164 29-77 (105)
46 1x5t_A Splicing factor 3B subu 28.3 78 0.0027 20.5 4.2 37 128-164 18-67 (96)
47 1iqt_A AUF1, heterogeneous nuc 28.2 47 0.0016 20.5 2.9 36 128-163 12-59 (75)
48 2cqi_A Nucleolysin TIAR; RNA r 28.2 56 0.0019 21.7 3.5 38 128-165 28-75 (103)
49 2dgw_A Probable RNA-binding pr 28.0 48 0.0016 21.5 3.0 35 128-163 23-68 (91)
50 2mss_A Protein (musashi1); RNA 27.9 64 0.0022 20.0 3.5 36 128-163 12-59 (75)
51 2fc9_A NCL protein; structure 27.7 40 0.0014 22.4 2.6 38 128-165 28-73 (101)
52 2cpd_A Apobec-1 stimulating pr 27.6 57 0.002 21.5 3.4 38 128-165 28-71 (99)
53 2dnp_A RNA-binding protein 14; 27.5 60 0.0021 21.0 3.5 38 128-165 22-63 (90)
54 2cqp_A RNA-binding protein 12; 27.3 45 0.0015 21.9 2.8 38 128-165 28-77 (98)
55 2kxn_B Transformer-2 protein h 27.3 65 0.0022 22.9 3.9 38 128-165 59-108 (129)
56 1uaw_A Mouse-musashi-1; RNP-ty 26.5 53 0.0018 20.4 2.9 37 129-165 14-62 (77)
57 2la4_A Nuclear and cytoplasmic 26.4 85 0.0029 20.7 4.1 38 128-165 40-83 (101)
58 2cpy_A RNA-binding protein 12; 26.1 35 0.0012 23.5 2.1 37 128-164 28-76 (114)
59 3mab_A Uncharacterized protein 26.0 36 0.0012 24.1 2.1 20 122-141 68-87 (93)
60 1x5p_A Negative elongation fac 25.9 59 0.002 21.4 3.2 36 129-164 27-68 (97)
61 1whw_A Hypothetical protein ri 25.9 94 0.0032 20.3 4.3 38 128-165 21-70 (99)
62 2jvr_A Nucleolar protein 3; RN 25.8 87 0.003 22.0 4.3 37 128-164 41-86 (111)
63 1whx_A Hypothetical protein ri 25.6 79 0.0027 21.7 4.0 39 128-166 23-67 (111)
64 1oo0_B CG8781-PA, drosophila Y 25.5 71 0.0024 21.4 3.6 38 128-165 39-88 (110)
65 2dgo_A Cytotoxic granule-assoc 25.5 66 0.0023 21.8 3.5 38 128-165 28-77 (115)
66 2do0_A HnRNP M, heterogeneous 25.4 57 0.0019 22.0 3.1 38 128-165 28-76 (114)
67 1p27_B RNA-binding protein 8A; 25.3 69 0.0024 21.3 3.5 39 128-166 36-86 (106)
68 2cq2_A Hypothetical protein LO 25.3 61 0.0021 23.3 3.4 37 129-165 41-83 (114)
69 2cqd_A RNA-binding region cont 25.0 70 0.0024 21.7 3.6 37 128-164 30-78 (116)
70 1fj7_A Nucleolin RBD1, protein 25.0 78 0.0027 20.8 3.7 36 128-163 30-76 (101)
71 2dgv_A HnRNP M, heterogeneous 25.0 79 0.0027 20.3 3.7 39 128-166 21-69 (92)
72 2cqg_A TDP-43, TAR DNA-binding 24.8 64 0.0022 21.4 3.3 37 128-164 28-76 (103)
73 2diu_A KIAA0430 protein; struc 24.7 65 0.0022 23.0 3.3 46 118-164 14-65 (96)
74 2dnq_A RNA-binding protein 4B; 24.4 49 0.0017 21.5 2.5 38 129-166 22-63 (90)
75 1x4e_A RNA binding motif, sing 24.2 61 0.0021 20.6 2.9 39 128-166 18-68 (85)
76 1x4g_A Nucleolysin TIAR; struc 24.1 88 0.003 21.0 3.9 38 128-165 38-81 (109)
77 2div_A TRNA selenocysteine ass 24.0 93 0.0032 20.3 3.9 37 128-164 22-71 (99)
78 2khc_A Testis-specific RNP-typ 23.9 50 0.0017 22.5 2.6 37 128-164 53-101 (118)
79 2cpz_A CUG triplet repeat RNA- 23.9 73 0.0025 21.6 3.5 39 128-166 38-88 (115)
80 2cpj_A Non-POU domain-containi 23.6 49 0.0017 21.9 2.4 38 128-165 28-71 (99)
81 2pe8_A Splicing factor 45; RRM 23.4 1.4E+02 0.005 20.4 5.0 45 123-167 21-78 (105)
82 4fxv_A ELAV-like protein 1; RN 23.4 84 0.0029 21.2 3.7 38 128-165 32-81 (99)
83 1x4h_A RNA-binding protein 28; 23.3 98 0.0033 20.6 4.0 38 128-165 28-77 (111)
84 2cpe_A RNA-binding protein EWS 23.0 81 0.0028 21.2 3.6 38 128-165 28-85 (113)
85 2ad9_A Polypyrimidine tract-bi 23.0 71 0.0024 23.0 3.4 38 128-165 44-87 (119)
86 1sjq_A Polypyrimidine tract-bi 22.6 87 0.003 22.1 3.7 37 129-165 30-72 (105)
87 1wg1_A KIAA1579 protein, homol 22.5 69 0.0024 20.7 3.0 37 128-165 18-60 (88)
88 1x4b_A Heterogeneous nuclear r 22.5 63 0.0021 22.0 2.9 37 128-164 40-88 (116)
89 2kt5_A RNA and export factor-b 22.0 1.1E+02 0.0039 20.9 4.2 38 128-165 48-96 (124)
90 2err_A Ataxin-2-binding protei 21.9 73 0.0025 21.7 3.1 38 128-165 42-89 (109)
91 2jwn_A Embryonic polyadenylate 21.9 97 0.0033 21.2 3.8 35 128-162 49-95 (124)
92 1p1t_A Cleavage stimulation fa 21.7 98 0.0034 20.3 3.7 38 128-165 21-70 (104)
93 2cq3_A RNA-binding protein 9; 21.7 60 0.002 21.5 2.6 38 128-165 28-75 (103)
94 2lxi_A RNA-binding protein 10; 21.7 1.4E+02 0.0047 19.6 4.5 37 128-164 14-63 (91)
95 1wex_A Hypothetical protein (r 21.6 72 0.0025 22.0 3.1 38 128-165 28-71 (104)
96 2c35_B Human RPB7, DNA-directe 21.6 67 0.0023 24.2 3.1 56 52-113 103-166 (172)
97 1fjc_A Nucleolin RBD2, protein 21.4 49 0.0017 21.6 2.1 38 128-165 29-73 (96)
98 3egn_A RNA-binding protein 40; 21.3 93 0.0032 22.0 3.7 39 128-166 58-113 (143)
99 2fy1_A RNA-binding motif prote 21.1 1.2E+02 0.0043 20.8 4.3 37 128-164 20-67 (116)
100 2cpx_A Hypothetical protein FL 21.1 1.1E+02 0.0037 20.6 3.9 37 128-164 38-86 (115)
101 1vcb_B Protein (elongin C); tu 21.1 1.2E+02 0.0042 21.6 4.3 45 122-166 63-108 (112)
102 2jrs_A RNA-binding protein 39; 20.9 65 0.0022 22.0 2.7 38 128-165 39-88 (108)
103 2krb_A Eukaryotic translation 20.8 1E+02 0.0035 19.4 3.5 37 128-164 20-66 (81)
104 2dhg_A TRNA selenocysteine ass 20.8 1.2E+02 0.004 20.0 4.0 38 128-165 22-71 (104)
105 4a8x_A RNA-binding protein wit 20.8 75 0.0026 20.1 2.9 38 128-165 17-67 (88)
106 2e5h_A Zinc finger CCHC-type a 20.5 85 0.0029 20.2 3.1 38 128-165 29-78 (94)
107 2dit_A HIV TAT specific factor 20.4 1.5E+02 0.005 20.2 4.5 39 127-165 38-84 (112)
108 2jvo_A Nucleolar protein 3; nu 20.4 84 0.0029 21.5 3.2 38 128-165 44-85 (108)
109 2kn4_A Immunoglobulin G-bindin 20.3 1.3E+02 0.0043 21.5 4.3 37 128-164 83-131 (158)
110 2bz2_A Negative elongation fac 20.2 93 0.0032 21.9 3.5 37 129-165 51-93 (121)
111 2fc8_A NCL protein; structure 20.2 54 0.0018 21.7 2.1 38 128-165 28-74 (102)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=1.4e-76 Score=482.43 Aligned_cols=174 Identities=43% Similarity=0.749 Sum_probs=169.7
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccC
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 80 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~ 80 (179)
.|||+||+|.+.|+.||||||||+||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 2 spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~~ 81 (178)
T 3q46_A 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPVY 81 (178)
T ss_dssp CTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCCC
T ss_pred CccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCCCceeEeccccCHHHHHH
Q 030340 81 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIE 160 (179)
Q Consensus 81 ~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~legK~~~~~~~~~~~~A~~ 160 (179)
|||+++||+||+|+|+|+||+|||||||+.+||+|++++|++|||++++++|+|||++||.+|||++++.+|.|+++|++
T Consensus 82 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~~ 161 (178)
T 3q46_A 82 PLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKR 161 (178)
T ss_dssp TTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHHH
T ss_pred CceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 030340 161 AIKYSMDLYASYIV 174 (179)
Q Consensus 161 ~I~~~~~~~~~~~~ 174 (179)
+|++|+++|++++.
T Consensus 162 ~I~~~~~~~~~~~~ 175 (178)
T 3q46_A 162 EILRAIEMYKEKFG 175 (178)
T ss_dssp HHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=1.4e-74 Score=476.21 Aligned_cols=171 Identities=40% Similarity=0.633 Sum_probs=167.7
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEeccccc
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 79 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~-~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~ 79 (179)
|+||+||+|++.|+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 22 m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~DgDPLDvlvl~~~p~ 101 (196)
T 3gvf_A 22 MSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPL 101 (196)
T ss_dssp -CGGGSCSCSBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCCCceEEEEecCCcc
Confidence 899999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 030340 80 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 156 (179)
Q Consensus 80 ~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~d--p~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~ 156 (179)
.|||+++|||||+|+|+|+||.|||||||+.+| |+|++|+|++|||++++++|+|||++||.+| ||++++.+|.|++
T Consensus 102 ~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~ 181 (196)
T 3gvf_A 102 LAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGID 181 (196)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCCCCeEEeccCcCHH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 030340 157 AAIEAIKYSMDLYAS 171 (179)
Q Consensus 157 ~A~~~I~~~~~~~~~ 171 (179)
+|+++|++|+++|++
T Consensus 182 ~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 182 AAHKEITDGVANFKK 196 (196)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999964
No 3
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=3.4e-74 Score=474.35 Aligned_cols=171 Identities=37% Similarity=0.647 Sum_probs=167.6
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCC-CCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEeccccc
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKG-GKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 79 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~g-s~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~ 79 (179)
|+||+||+|++.|+.||||||||+| |++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 22 m~~~~ip~g~~~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPLDvlvl~~~p~ 101 (197)
T 3fq3_A 22 MNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPL 101 (197)
T ss_dssp CCGGGSCSCSSTTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CCHHHCCCCCCCCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCCCceEEEEEcCCCC
Confidence 8999999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 030340 80 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 156 (179)
Q Consensus 80 ~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~ 156 (179)
.|||+++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.|| ||++++.+|.|++
T Consensus 102 ~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v~~~~~~~ 181 (197)
T 3fq3_A 102 IPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDED 181 (197)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEECCCBCHH
T ss_pred CCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHH
Confidence 99999999999999999999999999999999 89999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 030340 157 AAIEAIKYSMDLYAS 171 (179)
Q Consensus 157 ~A~~~I~~~~~~~~~ 171 (179)
+|+++|++|+++|++
T Consensus 182 ~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 182 YARKFIVEAIERAKG 196 (197)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999975
No 4
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=3.9e-74 Score=466.73 Aligned_cols=171 Identities=40% Similarity=0.650 Sum_probs=168.3
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccC
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 80 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~ 80 (179)
.|||+||+|.+.|+.||||||||+||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~h~ip~~~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLL 80 (174)
T ss_dssp CCGGGSCCCTTTTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEECSSCCC
T ss_pred CCcccCCCCCCCCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEECCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCC---CceeEeccccCHHH
Q 030340 81 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE---NKKVDVEDFLPAEA 157 (179)
Q Consensus 81 ~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le---gK~~~~~~~~~~~~ 157 (179)
|||+++||+||+|+|+|+||+|||||||+.+||+|++|+|++|||++++++|+|||++||.+| ||++++.||.++++
T Consensus 81 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~ 160 (174)
T 2prd_A 81 PGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160 (174)
T ss_dssp TTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 030340 158 AIEAIKYSMDLYAS 171 (179)
Q Consensus 158 A~~~I~~~~~~~~~ 171 (179)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 161 ALEEVRACIARYKG 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999974
No 5
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=1.5e-73 Score=463.47 Aligned_cols=170 Identities=39% Similarity=0.628 Sum_probs=168.1
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccC
Q 030340 2 LYVLIFAGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 80 (179)
Q Consensus 2 ~~~~i~~g~~~p~~~~~viEIP~gs~-~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~ 80 (179)
+||+||+|++.|+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+.
T Consensus 1 ~~~~ip~~~~~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQ 80 (175)
T ss_dssp CGGGCCSCSBTTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCCC
T ss_pred CcccCCCCCCCCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEECCCCCC
Confidence 69999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHH
Q 030340 81 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 157 (179)
Q Consensus 81 ~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~ 157 (179)
|||+++||+||+|+|+|+||.|||||||+.+ ||+|++++|++|||++++++|+|||++||.+| ||++++.||.++++
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~ 160 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEccccCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 030340 158 AIEAIKYSMDLYAS 171 (179)
Q Consensus 158 A~~~I~~~~~~~~~ 171 (179)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 161 AKAEIVASFERAKN 174 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 6
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=8.6e-74 Score=472.53 Aligned_cols=171 Identities=39% Similarity=0.597 Sum_probs=164.3
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCC-CceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEeccccc
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 79 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs-~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~ 79 (179)
|+||+||+|++.|+.||||||||+|| ++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+
T Consensus 22 m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~p~ 101 (199)
T 3ld3_A 22 MNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLVLARFPV 101 (199)
T ss_dssp ----CCCSCTTTTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CChHHCCCCCCCCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCCceEEEEecCCCC
Confidence 89999999999999999999999998 59999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 030340 80 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 156 (179)
Q Consensus 80 ~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~ 156 (179)
+|||+++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.|| ||++++.+|.|++
T Consensus 102 ~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~ 181 (199)
T 3ld3_A 102 MPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAA 181 (199)
T ss_dssp CTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHH
T ss_pred CCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEecCCCCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999998 7999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 030340 157 AAIEAIKYSMDLYAS 171 (179)
Q Consensus 157 ~A~~~I~~~~~~~~~ 171 (179)
+|+++|++|+++|++
T Consensus 182 ~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 182 SAKELIRSAIIAAKK 196 (199)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999975
No 7
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=6.9e-74 Score=464.88 Aligned_cols=170 Identities=41% Similarity=0.656 Sum_probs=161.7
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccC
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 80 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~ 80 (179)
|+||+||+|++ |+.||||||||+||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 m~~~~ip~~~~-p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 79 (173)
T 2bqx_A 1 MNLEKLEVSHD-ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQ 79 (173)
T ss_dssp ------CCCEE-TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECCSSCCC
T ss_pred CCcccCCCCCC-CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEECCCCCC
Confidence 89999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHH
Q 030340 81 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 157 (179)
Q Consensus 81 ~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~ 157 (179)
|||+++||+||+|+|+|+||.|||||||+.+ ||+|+++++++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 80 ~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~ 159 (173)
T 2bqx_A 80 AGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159 (173)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHHH
T ss_pred CceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcCcCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 030340 158 AIEAIKYSMDLYAS 171 (179)
Q Consensus 158 A~~~I~~~~~~~~~ 171 (179)
|+++|++|+++|++
T Consensus 160 A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 160 AIKVLEKAIKAYQG 173 (173)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999964
No 8
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=2.3e-73 Score=461.78 Aligned_cols=167 Identities=41% Similarity=0.639 Sum_probs=164.3
Q ss_pred CccccCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEeccccc
Q 030340 1 MLYVLIFAGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 79 (179)
Q Consensus 1 ~~~~~i~~g~~~p~~~~~viEIP~gs~-~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~ 79 (179)
|+||+||+|.+ |+.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|+
T Consensus 2 m~~~~ip~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~ 80 (173)
T 3d53_A 2 MFIKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPV 80 (173)
T ss_dssp -CGGGSCSCSS-TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCC-CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEECCCcc
Confidence 89999999998 999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHH
Q 030340 80 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 156 (179)
Q Consensus 80 ~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~ 156 (179)
.|||+++||+||+|+|+|+||+|||||||+.+ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.+++
T Consensus 81 ~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~ 160 (173)
T 3d53_A 81 VPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKV 160 (173)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 030340 157 AAIEAIKYSMDL 168 (179)
Q Consensus 157 ~A~~~I~~~~~~ 168 (179)
+|+++|++|+++
T Consensus 161 ~A~~~I~~~~~~ 172 (173)
T 3d53_A 161 KAETLIKEGIDR 172 (173)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 9
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=3e-72 Score=456.93 Aligned_cols=167 Identities=40% Similarity=0.655 Sum_probs=162.2
Q ss_pred ccCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCe
Q 030340 4 VLIFAGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPG 82 (179)
Q Consensus 4 ~~i~~g~~~p~~~~~viEIP~gs~-~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G 82 (179)
|+||+|.+. +.||||||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||
T Consensus 6 h~ip~g~~~-~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp --CCCEEET-TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTT
T ss_pred ccCCCCCCC-CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECCCCCCCe
Confidence 899999876 99999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHH
Q 030340 83 SFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 159 (179)
Q Consensus 83 ~v~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~A~ 159 (179)
|+++|||||+|+|+|+||+|||||||+.+ ||+|++|+|++|||++++++|+|||++||.|| ||++++.+|.|+++|+
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~ 164 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAK 164 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHH
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCcCHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHH
Q 030340 160 EAIKYSMDLYAS 171 (179)
Q Consensus 160 ~~I~~~~~~~~~ 171 (179)
++|++||++|++
T Consensus 165 ~~I~~~~~~~~~ 176 (178)
T 3tr4_A 165 KEFEASIVRFKE 176 (178)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 10
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=5.6e-72 Score=453.67 Aligned_cols=167 Identities=44% Similarity=0.740 Sum_probs=164.2
Q ss_pred cCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCeeE
Q 030340 5 LIFAGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSF 84 (179)
Q Consensus 5 ~i~~g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G~v 84 (179)
+||+|++.|+.||||||||+||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||+++|+.|||+
T Consensus 2 ~i~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~G~v 81 (173)
T 1qez_A 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSV 81 (173)
T ss_dssp CCCSCTTTTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTTCE
T ss_pred CcCCCCCCCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCCCCCccE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEEeeeCCCCccEEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHHHH
Q 030340 85 LRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEA 161 (179)
Q Consensus 85 ~~~rviG~l~m~D~ge~D~KiiaV~~~--dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~A~~~ 161 (179)
++||+||+|+|+|+||.|||||||+.+ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~ 161 (173)
T 1qez_A 82 IEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNR 161 (173)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHH
T ss_pred EEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHH
Q 030340 162 IKYSMDLYAS 171 (179)
Q Consensus 162 I~~~~~~~~~ 171 (179)
|++||++|++
T Consensus 162 I~~~~~~~~~ 171 (173)
T 1qez_A 162 IQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 11
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=6.7e-70 Score=440.92 Aligned_cols=159 Identities=36% Similarity=0.730 Sum_probs=155.3
Q ss_pred CCeeEEEEeeCCCCCceEEEecCCCCeEeeeecccCCcCcccccccccccCCCCCceeEEEecccccCCeeEEEEEEeee
Q 030340 13 PAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 92 (179)
Q Consensus 13 p~~~~~viEIP~gs~~KyE~d~~~g~i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~~~~~G~v~~~rviG~ 92 (179)
--.||||||||+||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|++|||+++|||||+
T Consensus 10 ~~~~nvvIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~r~iGv 89 (172)
T 1sxv_A 10 HMQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGM 89 (172)
T ss_dssp CCCEEEEEEECTTCCEEC-CCTTTCCCCCCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEEEEEEE
T ss_pred ceEEEEEEEECCCCCeEEEEEcCCCCEEEEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEEEEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCccEEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhccCC-CceeEeccccCHHHHHHHHHHHHHHHHH
Q 030340 93 MPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 171 (179)
Q Consensus 93 l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~~~l~~i~~fF~~YK~le-gK~~~~~~~~~~~~A~~~I~~~~~~~~~ 171 (179)
|+|+|+||.|||||||+.+||+|++++|++|||++++++|+|||++||.|| ||++++.+|.++++|+++|++|+++|++
T Consensus 90 l~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 90 FRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 169 (172)
T ss_dssp EEEEETTEECCEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCCEEEEEeCCCCCccccCChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999986
No 12
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=1.3e-67 Score=455.66 Aligned_cols=176 Identities=28% Similarity=0.412 Sum_probs=167.2
Q ss_pred CccccCCCCCCCC-CeeEEEEeeCCCCCceEEEecCC-----------CCeEeeeecccCCcCccccccccccc------
Q 030340 1 MLYVLIFAGPGAP-AVCNCVVEIGKGGKVKYELDKAS-----------GLIKVDRVLYSSVVYPHNYGFIPRTI------ 62 (179)
Q Consensus 1 ~~~~~i~~g~~~p-~~~~~viEIP~gs~~KyE~d~~~-----------g~i~~Dr~l~~~~~yP~NYGfIP~T~------ 62 (179)
.|||+||++.+.| +.||||||||+||++|||+|+++ |.+++||++++++.||+|||||||||
T Consensus 27 sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~l~~~~~YP~NYGfIPqTledp~~~ 106 (286)
T 1e9g_A 27 SAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVS 106 (286)
T ss_dssp CTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCEETTCCSCSSEEEECSSCCCCTTSE
T ss_pred CchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEeccCCCCCCccCcccCcccccCcccc
Confidence 3899999998764 99999999999999999999997 77889999999999999999999999
Q ss_pred ------CCCCCceeEEEecccccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCCCCCCCCCCCCCCh---hHHHHHH
Q 030340 63 ------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPP---HRLAEIR 133 (179)
Q Consensus 63 ------~~DgDPLDvlvl~~~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~i~dl~~---~~l~~i~ 133 (179)
+|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||+.+||+|++|+|++||++ +++++|+
T Consensus 107 ~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~Dp~~~~i~di~Dl~~~~p~~l~~i~ 186 (286)
T 1e9g_A 107 HPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATN 186 (286)
T ss_dssp ETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTSTTGGGCCSHHHHHHHSTTHHHHHH
T ss_pred cccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCCcccccCCCHHHhchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999977 8999999
Q ss_pred HHHHHhccCCCce---eEe-ccccCHHHHHHHHHHHHHHHHHHHHHH
Q 030340 134 RFFEDYKKNENKK---VDV-EDFLPAEAAIEAIKYSMDLYASYIVES 176 (179)
Q Consensus 134 ~fF~~YK~legK~---~~~-~~~~~~~~A~~~I~~~~~~~~~~~~~~ 176 (179)
|||++||.+|||+ +.+ .+|.++++|+++|++||++|++++..+
T Consensus 187 ~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~~~ 233 (286)
T 1e9g_A 187 EWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233 (286)
T ss_dssp HHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998 344 799999999999999999999998743
No 13
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=47.57 E-value=22 Score=25.55 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=41.9
Q ss_pred CCCCCCeeEEEEeeCCCCCceEEEecCCCCeE------------ee--eecccCCcCcccccccccccC-CCCCceeEEE
Q 030340 9 GPGAPAVCNCVVEIGKGGKVKYELDKASGLIK------------VD--RVLYSSVVYPHNYGFIPRTIC-EDSDPMDVLV 73 (179)
Q Consensus 9 g~~~p~~~~~viEIP~gs~~KyE~d~~~g~i~------------~D--r~l~~~~~yP~NYGfIP~T~~-~DgDPLDvlv 73 (179)
-+.....+|+-|- -.|+...|.+-+.+.+=+ .+ |+++-+. ..|=--=|++|+ +|||-+|+++
T Consensus 15 ~~~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~--rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 15 LPETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET--ELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCSCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE--ECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCCCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc--CCCCCCCHhHcCCCCCCEEEEEE
Confidence 3344566888888 478889999988776521 11 3333222 233334456665 8999999999
Q ss_pred ecc
Q 030340 74 LMQ 76 (179)
Q Consensus 74 l~~ 76 (179)
+.+
T Consensus 92 ~~~ 94 (95)
T 2l76_A 92 LTS 94 (95)
T ss_dssp CCC
T ss_pred ecC
Confidence 875
No 14
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.43 E-value=34 Score=22.62 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------egK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .+|.+.+..|.+.++|.+.|+..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence 357789999999643 24557777899999998888754
No 15
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=38.14 E-value=27 Score=24.59 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=30.6
Q ss_pred eeEEEEeeCCCCCceEEEecCCCC--------------------eEeeeecccCCcCcccccccccccCCCCCceeEEE
Q 030340 15 VCNCVVEIGKGGKVKYELDKASGL--------------------IKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLV 73 (179)
Q Consensus 15 ~~~~viEIP~gs~~KyE~d~~~g~--------------------i~~Dr~l~~~~~yP~NYGfIP~T~~~DgDPLDvlv 73 (179)
.++.+.--.+....|+++...+.. +..|--.-.+..+|..|+. .|||-+||++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dlem------eD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTEL------EDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSC------CTTCEEEEEC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCC------cCCceeeeee
Confidence 455556666666677777665521 1111000134566777664 7999999974
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.10 E-value=37 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|+..
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3677899999985332 2336777899999999888754
No 17
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.93 E-value=40 Score=22.03 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcc-CCC-----ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKK-NEN-----KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~-leg-----K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-. .+. +.+.+..|.+.+.|.+.|++.+
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHcc
Confidence 45778999999987 443 3356678899999988887543
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=36.54 E-value=36 Score=21.76 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.++...
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 357789999988422 12 2356678899999998887543
No 19
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.42 E-value=54 Score=21.63 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccCC-------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|+..
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 4577899999996553 2346667889999998888753
No 20
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=36.27 E-value=43 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccC------------CCceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------------egK~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-.. ..+.+.+..|.+.++|.+.|+.
T Consensus 76 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 76 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 357789999998432 1244677789999999888764
No 21
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=36.11 E-value=68 Score=21.15 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCC-------CceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-------gK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.++..+
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHC
Confidence 4577899999996543 24466778899999998887544
No 22
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=35.82 E-value=3.5 Score=26.01 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=15.6
Q ss_pred CcccccccccccC-----------CCCCceeE
Q 030340 51 YPHNYGFIPRTIC-----------EDSDPMDV 71 (179)
Q Consensus 51 yP~NYGfIP~T~~-----------~DgDPLDv 71 (179)
++|+++=+++|+. .||||+|+
T Consensus 2 ~~~~~~k~~~~~~~~~~R~iy~~~~dgd~~dk 33 (45)
T 1jo6_A 2 FIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDK 33 (45)
T ss_dssp CCSSCCCCCCSSSSCSTTSSHHHHHHHHTTTS
T ss_pred cccccccceeeeccccccccccccccCCcccc
Confidence 4677777777773 58999997
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.49 E-value=57 Score=21.52 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... | +-+.+..|.+.++|.+.|+...
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 4567899999984321 1 2366778999999998887543
No 24
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.27 E-value=54 Score=21.33 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg----K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.... +.+.+..|.+.++|.+.|+..
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 45778999999965542 335667899999999888754
No 25
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.33 E-value=40 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhccC-------------CCc--eeEeccccCHHHHHHHHHH
Q 030340 127 HRLAEIRRFFEDYKKN-------------ENK--KVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 127 ~~l~~i~~fF~~YK~l-------------egK--~~~~~~~~~~~~A~~~I~~ 164 (179)
-.-+.|++||..|... .|+ -+.+..|.+.++|.+.|+.
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4567899999999432 243 2567789999999988864
No 26
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=33.06 E-value=34 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 129 l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
-++|+++|..|-... | +.+.+..|.+.+.|.+.++..
T Consensus 21 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 21 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 577899999985321 2 235667889999998888754
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.38 E-value=48 Score=21.51 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. + | +.+.+..|.+.++|.+.++..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 456799999998532 1 2 235667889999999888754
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=31.83 E-value=58 Score=21.38 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. + | +.+.+..|.+.+.|.+.|+..
T Consensus 15 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 357789999998421 1 2 346677889999998888754
No 29
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=31.36 E-value=30 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|++.
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 82 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGE 82 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 5788999999997654 3446667888888888887653
No 30
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=31.22 E-value=51 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHh----c-------c------CCCceeEeccccCHHHHHHHH
Q 030340 128 RLAEIRRFFEDY----K-------K------NENKKVDVEDFLPAEAAIEAI 162 (179)
Q Consensus 128 ~l~~i~~fF~~Y----K-------~------legK~~~~~~~~~~~~A~~~I 162 (179)
.-++|+++|..| - . ...|.+.+..|.+.+.|.+.+
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 357789999999 3 1 112446667889999998876
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=31.03 E-value=56 Score=21.29 Aligned_cols=38 Identities=0% Similarity=-0.070 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhc--cCC----------Cc--eeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYK--KNE----------NK--KVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK--~le----------gK--~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|- ... |+ -+.+..|.+.++|.+.|+..
T Consensus 14 t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 14 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 3567889999997 322 22 25666889999999887654
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=30.56 E-value=69 Score=21.26 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCC------------CceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------------gK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+..+
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3567899999985321 23467778899999998887544
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.09 E-value=43 Score=22.09 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhccC---------C---CceeEeccccCHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E---NKKVDVEDFLPAEAAIEAIK 163 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e---gK~~~~~~~~~~~~A~~~I~ 163 (179)
.-++|+++|..|-.. + .+.+.+..|.+.+.|.+.|+
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 356789999988421 1 23467778899999988885
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=30.05 E-value=38 Score=22.06 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccC---------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 357789999998422 12 235667889999998888754
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=29.85 E-value=45 Score=22.09 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccCCC--------------------ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN--------------------KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg--------------------K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.... |.+.+..|.+.+.|.+.|+..
T Consensus 26 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 26 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 46778999998864432 224556788999998887653
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.74 E-value=56 Score=21.22 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... | +-+.+..|.+.+.|.+.|+..+
T Consensus 18 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 18 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4567899999884221 2 2366778899999998887543
No 37
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.44 E-value=56 Score=22.00 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhccCC---------CceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE---------NKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le---------gK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... .+.+.+..|.+.++|.+.|+..+
T Consensus 35 t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 35 RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 4577899999985321 13366778899999998887543
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=29.09 E-value=49 Score=20.87 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.++|.+.++..
T Consensus 14 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 3567889999884321 2 235666889999998888653
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.83 E-value=75 Score=21.06 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccC-----------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN-----------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l-----------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 28 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 467789999998421 12 346777899999999888764
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.78 E-value=59 Score=21.57 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-+.|+++|..|-.. .| +-+.+..|.+.+.|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 28 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 457789999999432 12 23667788999999988865
No 41
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=28.71 E-value=48 Score=22.19 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... .+.+.+..|.+.+.|.+.|+..
T Consensus 36 t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 36 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 4677899999996443 2446677889999998888754
No 42
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=28.49 E-value=53 Score=21.93 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... -+.+.+..|.+.+.|.+.|+..
T Consensus 24 t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 24 TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEM 65 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHH
Confidence 4577899999996433 1335667889999999888753
No 43
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=28.38 E-value=42 Score=21.87 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 4577899999886543 2 224566889999998888753
No 44
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=28.34 E-value=50 Score=21.84 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg----K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-.... |.+.+..|.+.+.|.+.|+..
T Consensus 24 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 65 (96)
T 2kvi_A 24 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECE 65 (96)
T ss_dssp CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 45778999999965542 446667889999999888753
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.34 E-value=42 Score=22.44 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-.. . | +-+.+..|.+.+.|.+.|+.
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 467789999999422 1 2 23566788899988888765
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.29 E-value=78 Score=20.52 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCC-----------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-----------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-----------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 18 t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 18 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3577899999984321 1 23667789999999988874
No 47
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=28.22 E-value=47 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIK 163 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~ 163 (179)
.-++|+.+|..|-... | +.+.+..|.+.+.|.+.++
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 3567899999985321 2 3356677888888888776
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.18 E-value=56 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCC----------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... +|.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cqi_A 28 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 75 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHh
Confidence 4577899999995321 3446777889999998888754
No 49
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.96 E-value=48 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIK 163 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le---------g--K~~~~~~~~~~~~A~~~I~ 163 (179)
.-++|+++|..| ... | +-+.+..|.+.++|.+.|+
T Consensus 23 t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 23 TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 356789999998 332 2 2256678899999988875
No 50
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=27.86 E-value=64 Score=19.95 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIK 163 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~ 163 (179)
.-++|+.+|..|-... | +.+.+..|.+.+.|.+.++
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3567889999984321 2 2366678889998887764
No 51
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.75 E-value=40 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccC------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| |.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 73 (101)
T 2fc9_A 28 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 73 (101)
T ss_dssp CHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 356788899887432 12 346778899999999888753
No 52
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.60 E-value=57 Score=21.53 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHh--ccCC----CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDY--KKNE----NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~Y--K~le----gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..| -... -+.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 457789999999 2221 1335667889999998887643
No 53
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=60 Score=21.00 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCC----CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... -+.+.+..|.+.+.|.+.|+..
T Consensus 22 t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 22 TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 63 (90)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 4577899999996543 1335667889999998888754
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.32 E-value=45 Score=21.92 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|++.
T Consensus 28 t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 4567899999986543 1 234566889999999888754
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=27.29 E-value=65 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccC------------CCceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------------egK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-.. ..|.+.+..|.+.+.|.+.|++.
T Consensus 59 te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 59 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 456789999998422 12336777899999999888754
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.52 E-value=53 Score=20.35 Aligned_cols=37 Identities=11% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 129 l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
-++|+++|..|-... | +.+.+..|.+.++|.+.++..
T Consensus 14 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 14 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp SHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 456889999884322 1 336667888999988887643
No 57
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.41 E-value=85 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|+..
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVAL 83 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHh
Confidence 3577899999996543 3456777889999998888753
No 58
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.14 E-value=35 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|++||..|-..+ | |-+.+..|.+.++|.+.|+.
T Consensus 28 t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 28 TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4567999999986552 2 33566788999999888764
No 59
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=25.98 E-value=36 Score=24.07 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=17.9
Q ss_pred CCCChhHHHHHHHHHHHhcc
Q 030340 122 KELPPHRLAEIRRFFEDYKK 141 (179)
Q Consensus 122 ~dl~~~~l~~i~~fF~~YK~ 141 (179)
.+|++...+++++||...|.
T Consensus 68 ~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 68 HGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GGSCHHHHHHHHHHHHHHCC
T ss_pred HHCCHHHHHHHHHHHHHhhc
Confidence 56899999999999999885
No 60
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.93 E-value=59 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 129 l~~i~~fF~~YK~l------egK~~~~~~~~~~~~A~~~I~~ 164 (179)
-++|+.+|..|-.. ..|.+.+..|.+.+.|.+.|++
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 57788999988543 2345677788999999888865
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.86 E-value=94 Score=20.28 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|++.
T Consensus 21 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 21 SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh
Confidence 356789999998431 12 236777899999999888654
No 62
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=25.84 E-value=87 Score=22.00 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhc-cCC--------CceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYK-KNE--------NKKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK-~le--------gK~~~~~~~~~~~~A~~~I~~ 164 (179)
.-+.|+++|+.|- ... .+-+.+..|.+.++|.+.|+.
T Consensus 41 te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 3577889999996 321 234566788899999888864
No 63
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.60 E-value=79 Score=21.67 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------egK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-.. ..+.+.+..|.+.+.|.+.|+..+
T Consensus 23 te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 23 LAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 467789999998542 245567778999999988877543
No 64
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=25.53 E-value=71 Score=21.44 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. + | +.+.+..|.+.+.|.+.|+..
T Consensus 39 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 39 QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88 (110)
T ss_dssp CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 456789999998421 1 2 346777889999999888754
No 65
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=25.50 E-value=66 Score=21.78 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 28 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 357789999998432 12 235677889999999888754
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.37 E-value=57 Score=22.03 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccC---------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 28 ~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 28 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 467789999988422 23 235667889999998888754
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=25.34 E-value=69 Score=21.27 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-.. . | +.+.+..|.+.+.|.+.|+..+
T Consensus 36 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 36 TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 457789999998432 1 2 3356678899999988887543
No 68
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.27 E-value=61 Score=23.33 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 129 l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
-+.|++.|..|-..+ +|.+.+..|.+.++|.+.|++.
T Consensus 41 e~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~l 83 (114)
T 2cq2_A 41 RNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTL 83 (114)
T ss_dssp HHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHh
Confidence 477889999997432 5667788899999999888754
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.05 E-value=70 Score=21.73 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccC------C----C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------E----N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------e----g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-.. . | +-+.+..|.+.+.|.+.|+.
T Consensus 30 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 30 TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 457789999998421 1 1 23677789999999888764
No 70
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=25.03 E-value=78 Score=20.83 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccCC-----------CceeEeccccCHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-----------NKKVDVEDFLPAEAAIEAIK 163 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-----------gK~~~~~~~~~~~~A~~~I~ 163 (179)
.-++|+.+|..|-... .|-+.+..|.+.+.|.+.|+
T Consensus 30 t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 30 SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 3467788888874211 23367778899999988885
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=24.99 E-value=79 Score=20.29 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCC--------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE--------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le--------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..+
T Consensus 21 t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 21 TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 4677899999885321 2 3356678899999998887543
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.78 E-value=64 Score=21.38 Aligned_cols=37 Identities=8% Similarity=0.292 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccC---------C-Cc--eeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-NK--KVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-gK--~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-.. . |+ -+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 28 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 467789999998432 1 22 3667789999999988874
No 73
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.70 E-value=65 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCCC-CCCChh-HHHHHHHHHHHh--ccCC--CceeEeccccCHHHHHHHHHH
Q 030340 118 YKDI-KELPPH-RLAEIRRFFEDY--KKNE--NKKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 118 i~~i-~dl~~~-~l~~i~~fF~~Y--K~le--gK~~~~~~~~~~~~A~~~I~~ 164 (179)
|++| .++.+. +.+.+.+.|..| +.++ | -+.+..|.+.+.|.+.+++
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vtg-G~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSITG-CSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEECCT-TCEEEEESSHHHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEec-CEEEEEECCHHHHHHHHHH
Confidence 3444 245444 456799999999 4444 4 4566778888888877664
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.37 E-value=49 Score=21.46 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 129 l~~i~~fF~~YK~leg----K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
-++|+++|..|-.... |.+.+..|.+.+.|.+.++..+
T Consensus 22 ~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 22 EQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp HHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhc
Confidence 5678999999854331 3356678899999998887543
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.22 E-value=61 Score=20.61 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..+
T Consensus 18 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 18 TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 3567888998884211 2 3356678899999988887544
No 76
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.11 E-value=88 Score=21.01 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... .+.+.+..|.+.+.|.+.|+..
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 38 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHc
Confidence 4577889999985432 3556777889999998887654
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.01 E-value=93 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCC-----------Cc--eeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-----------NK--KVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-----------gK--~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-... |+ .+.+..|.+.+.|.+.|+.
T Consensus 22 t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 22 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 4577899999986543 11 2556688999999888764
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=23.92 E-value=50 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-.. + | +.+.+..|.+.+.|.+.|+.
T Consensus 53 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 53 TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 357789999998531 1 2 33667788999999888765
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=23.92 E-value=73 Score=21.60 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-++|+++|..|-... | |-+.+..|.+.+.|.+.|+..+
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 38 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 3578899999985432 2 2256678999999999887643
No 80
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.64 E-value=49 Score=21.90 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 28 TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVEL 71 (99)
T ss_dssp CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHh
Confidence 4677899999986543 3456677888999998887654
No 81
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=23.42 E-value=1.4e+02 Score=20.42 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHHHhccC-------------CCceeEeccccCHHHHHHHHHHHHH
Q 030340 123 ELPPHRLAEIRRFFEDYKKN-------------ENKKVDVEDFLPAEAAIEAIKYSMD 167 (179)
Q Consensus 123 dl~~~~l~~i~~fF~~YK~l-------------egK~~~~~~~~~~~~A~~~I~~~~~ 167 (179)
++...+-+.|++.|..|-.. ..+-+.+..|.+.++|.+.|++-+.
T Consensus 21 ~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 21 EVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 34344578999999998531 1244666788999999988876543
No 82
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=23.35 E-value=84 Score=21.16 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCC----------Cc--eeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------NK--KVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------gK--~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|+.|-... |+ .+.+..|.+.++|.+.|+..
T Consensus 32 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 4577899999985321 32 25667889999999888754
No 83
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.29 E-value=98 Score=20.60 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-.. . | +-+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 28 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 467789999988531 1 2 336777889999998888764
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.03 E-value=81 Score=21.22 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCC------------------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------------------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------------------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 28 TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 3577899999885443 2 225677889999999888753
No 85
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.98 E-value=71 Score=23.04 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... +|.+.+..|.+.++|.+.|+..
T Consensus 44 te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 44 TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHh
Confidence 3567889999987554 3556777899999998888654
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.60 E-value=87 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 129 l~~i~~fF~~YK~l------egK~~~~~~~~~~~~A~~~I~~~ 165 (179)
-++|++.|..|-.. .+|.+.+..|.+.++|.+.|+..
T Consensus 30 e~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 30 EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHh
Confidence 56688999998643 24667778899999999888754
No 87
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=22.52 E-value=69 Score=20.72 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCCC------ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN------KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg------K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..| .... |.+.+..|.+.+.|.+.|+..
T Consensus 18 t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 18 NCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 356788999999 4432 335667889999998888743
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.47 E-value=63 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-... | +-+.+..|.+.+.|.+.|+.
T Consensus 40 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 3567889999884321 2 33667788999999888764
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=22.02 E-value=1.1e+02 Score=20.94 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le---------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 48 t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 96 (124)
T 2kt5_A 48 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY 96 (124)
T ss_dssp CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHc
Confidence 3567899999985322 2 336677889999998887754
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.93 E-value=73 Score=21.67 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccCCC----------ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN----------KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg----------K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.... |.+.+..|.+.+.|.+.++..
T Consensus 42 te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l 89 (109)
T 2err_A 42 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 89 (109)
T ss_dssp CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHc
Confidence 46778999999954321 346667888999998877653
No 91
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=21.86 E-value=97 Score=21.20 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAI 162 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I 162 (179)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 367789999998432 12 336677899999998887
No 92
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.70 E-value=98 Score=20.31 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 21 ~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 21 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 4577899999995432 2 235667889999999888653
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.68 E-value=60 Score=21.54 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCC----------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 28 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 3567899999984321 1446677899999998888754
No 94
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=21.66 E-value=1.4e+02 Score=19.57 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhc-cCC----------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYK-KNE----------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK-~le----------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|- ... | |.+.+..|.+.++|.+.|+.
T Consensus 14 te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 14 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 4567888999885 211 2 33677789999999888764
No 95
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.61 E-value=72 Score=22.01 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccC------CCceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l------egK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. .+|.+.+..|.+.+.|.+.|+..
T Consensus 28 te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 28 VEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 356788999988643 24567778899999999888754
No 96
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=21.61 E-value=67 Score=24.25 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=32.1
Q ss_pred cccccccccccCCCC---Ccee--EEEecc---cccCCeeEEEEEEeeeEEeeeCCCCccEEEEEecCCC
Q 030340 52 PHNYGFIPRTICEDS---DPMD--VLVLMQ---EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDP 113 (179)
Q Consensus 52 P~NYGfIP~T~~~Dg---DPLD--vlvl~~---~~~~~G~v~~~rviG~l~m~D~ge~D~KiiaV~~~dp 113 (179)
|++ |+||-+.-.|. ||.. -...+. ..+..|+.+++|++++=. ....-+.|+ ...++
T Consensus 103 ~~~-glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~----~~~~~~~ig-sm~~~ 166 (172)
T 2c35_B 103 PMS-CFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV----DKNDIFAIG-SLMDD 166 (172)
T ss_dssp TEE-EEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEE----ETTEEEEEE-ECCST
T ss_pred CEE-EEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEc----CCCCcEEEE-EecCC
Confidence 778 99987744322 2222 122222 247789999999999832 123345666 44443
No 97
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=21.45 E-value=49 Score=21.62 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCC-----C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-----N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-----g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 29 t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 73 (96)
T 1fjc_A 29 TEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 73 (96)
T ss_dssp CHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4567899999885332 2 336677889999998888743
No 98
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.30 E-value=93 Score=21.99 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCC-----------------CceeEeccccCHHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-----------------NKKVDVEDFLPAEAAIEAIKYSM 166 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-----------------gK~~~~~~~~~~~~A~~~I~~~~ 166 (179)
.-+.|+.+|..|-... .+.+.+..|.+.+.|.+.|+..+
T Consensus 58 te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 58 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 3567889999986432 23366778999999998887643
No 99
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=21.11 E-value=1.2e+02 Score=20.78 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccCC---------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le---------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+.+|..|-... | +.+.+..|.+.++|.+.|+.
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 20 NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4677899999985332 2 24667788999999888864
No 100
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.06 E-value=1.1e+02 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-++|+++|..|-..+ | +.+.+..|.+.+.|.+.|+.
T Consensus 38 t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 38 TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 4567888999885542 2 33667788999999888764
No 101
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=21.06 E-value=1.2e+02 Score=21.55 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHHhccCCCceeEeccc-cCHHHHHHHHHHHH
Q 030340 122 KELPPHRLAEIRRFFEDYKKNENKKVDVEDF-LPAEAAIEAIKYSM 166 (179)
Q Consensus 122 ~dl~~~~l~~i~~fF~~YK~legK~~~~~~~-~~~~~A~~~I~~~~ 166 (179)
..+....|+.+.+|+.+.+.-..+...+..| -+.+.+.++|..|.
T Consensus 63 pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAn 108 (112)
T 1vcb_B 63 REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAAN 108 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHH
Confidence 4577899999999999888643333334456 46777888877663
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=20.93 E-value=65 Score=22.00 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l---------e-g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-.. . | +.+.+..|.+.+.|.+.|+..
T Consensus 39 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 39 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 467789999998432 1 2 235667889999999888754
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=20.79 E-value=1e+02 Score=19.44 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccC--------CC--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN--------EN--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l--------eg--K~~~~~~~~~~~~A~~~I~~ 164 (179)
..+.|+++|..|-.. .| |.+.+..|.+.+.|.+.|+.
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 568899999999532 12 34667788999999887763
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.79 E-value=1.2e+02 Score=19.98 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-hccC---------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFED-YKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~-YK~l---------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|.. |-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 22 t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 22 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 35678999998 7532 22 335667889999999888754
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=20.78 E-value=75 Score=20.08 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhccCC-------------CceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE-------------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le-------------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.++..
T Consensus 17 t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 17 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc
Confidence 3567889999985321 2235666889999998888753
No 106
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.49 E-value=85 Score=20.22 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCC----------C--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~le----------g--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 29 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 29 TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 4667899999984321 1 235667889999999888643
No 107
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.41 E-value=1.5e+02 Score=20.16 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhccCC--------CceeEeccccCHHHHHHHHHHH
Q 030340 127 HRLAEIRRFFEDYKKNE--------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 127 ~~l~~i~~fF~~YK~le--------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
.+-+.|+.+|..|-... .+-+.+..|.+.+.|.+.|+..
T Consensus 38 ~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 38 EIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp HHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHc
Confidence 35688999999985432 2345667889999998887653
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=20.37 E-value=84 Score=21.48 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCCC----ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~leg----K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+.+|..|-..+. |.+.+..|.+.+.|.+.++..
T Consensus 44 t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 44 QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEV 85 (108)
T ss_dssp CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHc
Confidence 45778999999865542 345667889999998887653
No 109
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=20.34 E-value=1.3e+02 Score=21.50 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccC----------CC--ceeEeccccCHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKY 164 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l----------eg--K~~~~~~~~~~~~A~~~I~~ 164 (179)
.-+.|+++|..|-.. .| +.+.+..|.+.+.|.+.|+.
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 467789999998532 12 33667788999999888865
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=20.24 E-value=93 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCC------CceeEeccccCHHHHHHHHHHH
Q 030340 129 LAEIRRFFEDYKKNE------NKKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 129 l~~i~~fF~~YK~le------gK~~~~~~~~~~~~A~~~I~~~ 165 (179)
-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++.
T Consensus 51 e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~l 93 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAEL 93 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHh
Confidence 577889999886543 3556777899999998888653
No 111
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=54 Score=21.67 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccC-------CC--ceeEeccccCHHHHHHHHHHH
Q 030340 128 RLAEIRRFFEDYKKN-------EN--KKVDVEDFLPAEAAIEAIKYS 165 (179)
Q Consensus 128 ~l~~i~~fF~~YK~l-------eg--K~~~~~~~~~~~~A~~~I~~~ 165 (179)
.-++|+++|..|... .| +-+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 28 TEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74 (102)
T ss_dssp CHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 457788999877431 12 236677899999998888754
Done!