BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030341
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKE 168
KD GGG E + TLFV GLP D RE+ +FRPF GY+ ++L SK+
Sbjct: 6 KDTEHTNGGGNVE-----EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQ 59
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 119 GGGRSEVPLPPDASS-------TLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKE 168
GGG++E P ++ TLFV GLP D RE+ +FRPF GY+ ++L SK+
Sbjct: 3 GGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ 61
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKE 168
TLFV GLP D RE+ +FRPF GY+ ++L SK+
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQ 57
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKE 168
TLFV GLP D RE+ +FRPF GY+ ++L SK+
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ 61
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ TLFVE LP C ++ +F F G+KEV +V
Sbjct: 164 PPN--KTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV 199
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKE 168
TLFV GLP D RE+ +FRPF GY+ ++L S++
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQ 62
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLV 165
EVR++
Sbjct: 186 EVRMI 190
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 108 GPSAKDRALG-------LGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYK 160
GP+A ++ G LG E P PP+ + LF++ LP++ + + +F+ + G++
Sbjct: 128 GPNAAAQSNGTGYQASRLGKTSQEPPAPPN--NILFIQNLPAETTSMMLQILFQQYPGFR 185
Query: 161 EVRLV 165
EVR++
Sbjct: 186 EVRMI 190
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYK 160
TLFV GLP D RE+ +FRPF GY+
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGYE 58
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 36.6 bits (83), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 117 GLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166
G+ E P PP+ + LFV+ LP + + + +F + G+KEVR++
Sbjct: 163 GMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIE 210
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171
PP+ LF+ LP + + ++ +F F G+KEVRLV +RH
Sbjct: 139 PPN--QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP--NRH 178
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 117 GLGGGRSEVP-LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
G +VP PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 136 GTAAPNPQVPDYPPN--YILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV 183
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 111 AKDRALGL---GGGRSEVPLPPDASS-----TLFVEGLPSDCSRREVAHIFRPFVGYKEV 162
A D AL L GG R+++P+ P+ T+FV LP C+++++ F+ + + V
Sbjct: 159 ALDVALSLAKDGGQRTKIPVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESV 218
Query: 163 RLVS 166
R S
Sbjct: 219 RFRS 222
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 120 GGRSEVPLPPD--ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
G + P PD + LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 136 GNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV 183
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 210 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 245
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 111 AKDRALGL---GGGRSEVPLPPDASS-----TLFVEGLPSDCSRREVAHIFRPFVGYKEV 162
A D AL L G R++VPL P+ T+FV LP C+++++ F+ + + V
Sbjct: 153 ALDVALSLNEDGRQRTKVPLNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESV 212
Query: 163 RLVS 166
R S
Sbjct: 213 RFRS 216
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165
PP+ LF+ LP + + ++ +F F G+KEVRLV
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMI 175
+FV L CS+ E+ +F PF K+VRLV K ++ I
Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGI 766
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 122 RSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164
+S LPP+ + L+V LP + + E+ IF + +++R+
Sbjct: 8 KSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI 50
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 120 GGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164
R+ + LPP+ + L+V LP + E+ IF F +++R+
Sbjct: 2 NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV 46
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 134 TLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKESRHVSMI 175
TLFV GLP D RE+ +FR + GY+ +++ SK + S +
Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPV 495
>sp|P43573|BUD27_YEAST Bud site selection protein 27 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD27 PE=1 SV=1
Length = 796
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 36 HELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQISSYSGGQSARHMSGGMPSRPVD 95
HE YT D+D AL R + + Y R L+ A S + A H G + P+D
Sbjct: 718 HEFPESYTNDEDEVALHPGRLQEEVAIEYRR-LKEATASKWQSSSPAAHTEGEL--EPID 774
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,501,517
Number of Sequences: 539616
Number of extensions: 3323454
Number of successful extensions: 7625
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7597
Number of HSP's gapped (non-prelim): 45
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)