Query 030341
Match_columns 179
No_of_seqs 132 out of 264
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dng_A Eukaryotic translation 98.5 1.7E-07 5.9E-12 65.8 5.0 44 125-169 8-51 (103)
2 2cq1_A PTB-like protein L; RRM 98.5 2.3E-07 7.9E-12 67.5 5.8 45 131-179 14-58 (101)
3 3r27_A HnRNP L, heterogeneous 98.5 1.2E-07 4.2E-12 70.2 4.1 44 131-178 20-63 (100)
4 1wex_A Hypothetical protein (r 98.4 3.9E-07 1.3E-11 66.4 5.5 36 132-167 15-50 (104)
5 2cq3_A RNA-binding protein 9; 98.4 6.1E-07 2.1E-11 62.8 6.2 49 131-179 14-62 (103)
6 1wi8_A EIF-4B, eukaryotic tran 98.4 5.4E-07 1.8E-11 63.4 5.6 43 126-169 9-51 (104)
7 2cqi_A Nucleolysin TIAR; RNA r 98.4 3.3E-07 1.1E-11 64.2 4.5 49 131-179 14-62 (103)
8 3lqv_A PRE-mRNA branch site pr 98.4 4.4E-07 1.5E-11 64.7 5.0 52 127-179 3-54 (115)
9 2khc_A Testis-specific RNP-typ 98.3 1.6E-06 5.4E-11 62.0 7.7 38 131-168 39-76 (118)
10 2ad9_A Polypyrimidine tract-bi 98.3 5.9E-07 2E-11 68.1 5.1 45 131-179 30-74 (119)
11 1x4d_A Matrin 3; structural ge 98.3 5.7E-07 2E-11 66.0 4.9 47 129-179 12-59 (102)
12 1x4a_A Splicing factor, argini 98.3 1.3E-06 4.4E-11 61.9 6.6 48 131-179 21-68 (109)
13 1wf0_A TDP-43, TAR DNA-binding 98.3 9E-07 3.1E-11 60.5 5.3 46 131-179 4-49 (88)
14 1x4e_A RNA binding motif, sing 98.3 9.4E-07 3.2E-11 59.7 5.2 39 130-168 3-41 (85)
15 2e5h_A Zinc finger CCHC-type a 98.3 1.5E-06 5.2E-11 59.5 6.2 38 132-169 16-53 (94)
16 2dgv_A HnRNP M, heterogeneous 98.3 5.6E-07 1.9E-11 61.5 3.9 47 131-177 7-53 (92)
17 2d9p_A Polyadenylate-binding p 98.3 9.7E-07 3.3E-11 61.8 5.2 39 129-167 12-50 (103)
18 2la6_A RNA-binding protein FUS 98.3 9.8E-07 3.3E-11 61.5 5.2 43 127-169 8-58 (99)
19 2dnz_A Probable RNA-binding pr 98.3 1.1E-06 3.9E-11 60.2 5.2 39 131-169 4-42 (95)
20 2cpz_A CUG triplet repeat RNA- 98.3 1.9E-06 6.6E-11 61.5 6.6 38 131-168 24-61 (115)
21 1wg5_A Heterogeneous nuclear r 98.2 1.7E-06 5.8E-11 61.4 5.9 48 131-178 14-63 (104)
22 1sjq_A Polypyrimidine tract-bi 98.2 3.8E-07 1.3E-11 68.0 2.6 45 131-179 15-59 (105)
23 2err_A Ataxin-2-binding protei 98.2 1.4E-06 4.8E-11 62.5 5.3 49 131-179 28-76 (109)
24 2dnh_A Bruno-like 5, RNA bindi 98.2 2.4E-06 8E-11 59.8 6.3 41 131-171 14-54 (105)
25 2cph_A RNA binding motif prote 98.2 1.4E-06 4.7E-11 61.0 5.0 37 131-167 14-50 (107)
26 2dnm_A SRP46 splicing factor; 98.2 1.8E-06 6.2E-11 60.4 5.6 39 131-169 12-50 (103)
27 2lxi_A RNA-binding protein 10; 98.2 3E-07 1E-11 64.4 1.5 48 132-179 1-51 (91)
28 1x4h_A RNA-binding protein 28; 98.2 1.6E-06 5.5E-11 61.1 5.2 39 131-169 14-52 (111)
29 2dgw_A Probable RNA-binding pr 98.2 2.1E-06 7.3E-11 58.8 5.5 48 131-179 9-57 (91)
30 2cpj_A Non-POU domain-containi 98.2 3.5E-06 1.2E-10 58.7 6.6 35 132-166 15-49 (99)
31 2cqc_A Arginine/serine-rich sp 98.2 1.1E-06 3.8E-11 60.1 4.0 40 130-169 13-52 (95)
32 2do4_A Squamous cell carcinoma 98.2 2.6E-06 9E-11 59.2 6.0 41 131-171 16-56 (100)
33 2dgs_A DAZ-associated protein 98.2 2.2E-06 7.7E-11 59.5 5.6 38 131-168 9-46 (99)
34 3s7r_A Heterogeneous nuclear r 98.2 1.3E-06 4.6E-11 59.2 4.1 39 131-169 10-48 (87)
35 4f25_A Polyadenylate-binding p 98.2 5.9E-07 2E-11 65.1 2.1 48 132-179 5-52 (115)
36 2j76_E EIF-4B, EIF4B, eukaryot 98.2 8.2E-07 2.8E-11 62.5 2.7 39 129-168 16-54 (100)
37 2cpf_A RNA binding motif prote 98.2 7.3E-07 2.5E-11 61.7 2.3 39 131-169 4-42 (98)
38 1x4f_A Matrin 3; structural ge 98.2 3.1E-06 1.1E-10 63.5 5.9 44 132-179 25-69 (112)
39 1wez_A HnRNP H', FTP-3, hetero 98.2 3.9E-06 1.3E-10 60.1 6.1 48 131-179 14-62 (102)
40 3ulh_A THO complex subunit 4; 98.2 1.6E-06 5.5E-11 60.9 4.0 41 131-171 28-68 (107)
41 2cq0_A Eukaryotic translation 98.1 2.3E-06 8E-11 59.8 4.7 38 131-168 14-51 (103)
42 2lkz_A RNA-binding protein 5; 98.1 2E-06 6.8E-11 61.8 4.4 48 132-179 9-60 (95)
43 2do0_A HnRNP M, heterogeneous 98.1 4.3E-06 1.5E-10 59.2 6.0 40 132-171 15-54 (114)
44 2dgp_A Bruno-like 4, RNA bindi 98.1 1.7E-06 5.8E-11 60.6 3.7 39 131-169 12-50 (106)
45 2x1f_A MRNA 3'-END-processing 98.1 1.7E-06 5.8E-11 60.0 3.6 38 131-168 1-38 (96)
46 2m2b_A RNA-binding protein 10; 98.1 2.5E-06 8.6E-11 62.8 4.7 49 131-179 22-74 (131)
47 1x5u_A Splicing factor 3B subu 98.1 3.8E-06 1.3E-10 58.7 5.4 38 131-168 14-51 (105)
48 3tyt_A Heterogeneous nuclear r 98.1 8.3E-07 2.9E-11 70.8 2.1 48 132-179 123-172 (205)
49 3bs9_A Nucleolysin TIA-1 isofo 98.1 1.2E-06 4.1E-11 59.1 2.6 38 131-168 5-42 (87)
50 2dhg_A TRNA selenocysteine ass 98.1 2.3E-06 7.8E-11 59.8 4.1 42 130-171 7-49 (104)
51 1why_A Hypothetical protein ri 98.1 3.9E-06 1.3E-10 58.2 5.2 37 131-167 16-52 (97)
52 2lmi_A GRSF-1, G-rich sequence 98.1 2.8E-06 9.6E-11 60.6 4.6 50 130-179 9-62 (107)
53 2cqd_A RNA-binding region cont 98.1 4.4E-06 1.5E-10 59.7 5.5 38 131-168 16-53 (116)
54 1whw_A Hypothetical protein ri 98.1 2E-06 7E-11 59.5 3.6 38 131-168 7-44 (99)
55 2rs2_A Musashi-1, RNA-binding 98.1 2.6E-06 9E-11 61.2 4.3 50 130-179 23-74 (109)
56 2krb_A Eukaryotic translation 98.1 1.6E-06 5.6E-11 58.5 3.0 46 132-177 1-52 (81)
57 3mdf_A Peptidyl-prolyl CIS-tra 98.1 1.7E-06 5.9E-11 58.0 3.0 37 131-167 6-42 (85)
58 2la4_A Nuclear and cytoplasmic 98.1 3.8E-06 1.3E-10 58.5 4.9 45 131-179 26-70 (101)
59 2div_A TRNA selenocysteine ass 98.1 2.7E-06 9.3E-11 58.9 4.1 39 130-168 7-46 (99)
60 2cqg_A TDP-43, TAR DNA-binding 98.1 2.9E-06 9.9E-11 59.3 4.3 39 131-169 14-52 (103)
61 2cqb_A Peptidyl-prolyl CIS-tra 98.1 6E-06 2E-10 57.4 5.8 39 131-169 11-49 (102)
62 2cpy_A RNA-binding protein 12; 98.1 8.3E-06 2.8E-10 58.7 6.7 50 130-179 13-64 (114)
63 2fc8_A NCL protein; structure 98.1 7.1E-06 2.4E-10 57.1 6.1 36 130-168 13-48 (102)
64 2dnq_A RNA-binding protein 4B; 98.1 2.6E-06 8.8E-11 58.4 3.7 35 131-165 7-41 (90)
65 3d2w_A TAR DNA-binding protein 98.1 2.6E-06 8.9E-11 59.5 3.7 45 132-179 11-55 (89)
66 2ywk_A Putative RNA-binding pr 98.1 2.4E-06 8.2E-11 58.6 3.4 41 131-171 15-55 (95)
67 2dh8_A DAZ-associated protein 98.1 5.1E-06 1.7E-10 58.3 5.1 39 131-169 15-53 (105)
68 1wg1_A KIAA1579 protein, homol 98.1 3.1E-06 1.1E-10 58.1 3.9 43 132-179 5-47 (88)
69 2dgo_A Cytotoxic granule-assoc 98.1 3.4E-06 1.2E-10 60.1 4.2 38 131-168 14-51 (115)
70 3ex7_B RNA-binding protein 8A; 98.1 3.3E-06 1.1E-10 61.0 4.2 48 131-178 21-70 (126)
71 1x4c_A Splicing factor, argini 98.1 3E-06 1E-10 60.4 3.9 37 131-167 14-50 (108)
72 2ytc_A PRE-mRNA-splicing facto 98.0 4.2E-06 1.4E-10 56.3 4.3 35 132-166 12-46 (85)
73 2kxn_B Transformer-2 protein h 98.0 4.6E-06 1.6E-10 62.2 5.0 40 130-169 44-83 (129)
74 4f02_A Polyadenylate-binding p 98.0 1.8E-06 6.2E-11 67.7 2.9 44 126-169 9-52 (213)
75 1s79_A Lupus LA protein; RRM, 98.0 2.7E-06 9.3E-11 61.4 3.5 48 132-179 11-59 (103)
76 1x5s_A Cold-inducible RNA-bind 98.0 5.2E-06 1.8E-10 57.8 4.7 49 131-179 11-61 (102)
77 2cpe_A RNA-binding protein EWS 98.0 7.7E-06 2.6E-10 58.0 5.7 38 131-168 14-59 (113)
78 4fxv_A ELAV-like protein 1; RN 98.0 2.8E-06 9.5E-11 60.6 3.4 38 132-169 19-56 (99)
79 2nlw_A Eukaryotic translation 98.0 3.5E-06 1.2E-10 59.9 3.8 47 131-178 14-67 (105)
80 1x5t_A Splicing factor 3B subu 98.0 3.4E-06 1.2E-10 57.9 3.7 37 131-167 4-41 (96)
81 2cq4_A RNA binding motif prote 98.0 4.9E-06 1.7E-10 59.3 4.5 49 131-179 24-74 (114)
82 2hgn_A Heterogeneous nuclear r 98.0 5.3E-06 1.8E-10 63.7 4.9 48 131-179 45-93 (139)
83 2hgm_A HNRPF protein, heteroge 98.0 7.2E-06 2.5E-10 62.3 5.6 47 131-178 41-90 (126)
84 1oo0_B CG8781-PA, drosophila Y 98.0 3E-06 1E-10 59.9 3.2 38 131-168 25-62 (110)
85 2fy1_A RNA-binding motif prote 98.0 8.2E-06 2.8E-10 59.4 5.5 50 130-179 5-55 (116)
86 2db1_A Heterogeneous nuclear r 98.0 8.4E-06 2.9E-10 59.5 5.6 48 131-178 16-67 (118)
87 1wf1_A RNA-binding protein RAL 98.0 1.1E-05 3.9E-10 57.2 6.1 34 131-164 26-60 (110)
88 4a8x_A RNA-binding protein wit 98.0 2.7E-06 9.4E-11 57.2 2.7 38 132-169 4-41 (88)
89 1x5o_A RNA binding motif, sing 98.0 1.2E-05 4.2E-10 57.1 6.2 40 132-171 25-64 (114)
90 2jvo_A Nucleolar protein 3; nu 98.0 7.6E-06 2.6E-10 59.0 5.1 35 131-165 30-64 (108)
91 1uaw_A Mouse-musashi-1; RNP-ty 98.0 5.9E-06 2E-10 54.4 4.0 35 134-168 2-36 (77)
92 2jrs_A RNA-binding protein 39; 98.0 1.1E-05 3.7E-10 58.0 5.7 38 131-168 25-62 (108)
93 2dgx_A KIAA0430 protein; RRM d 98.0 3.8E-06 1.3E-10 58.6 3.2 47 131-178 8-58 (96)
94 1x4b_A Heterogeneous nuclear r 98.0 8.3E-06 2.8E-10 58.2 5.1 49 131-179 26-76 (116)
95 3pgw_A U1-A; protein-RNA compl 98.0 5.8E-06 2E-10 66.4 4.6 46 131-179 206-251 (282)
96 2kt5_A RNA and export factor-b 98.0 9E-06 3.1E-10 58.8 5.1 42 130-171 33-74 (124)
97 3s8s_A Histone-lysine N-methyl 98.0 5.2E-06 1.8E-10 60.5 3.9 38 132-169 6-43 (110)
98 1h2v_Z 20 kDa nuclear CAP bind 98.0 6.4E-06 2.2E-10 61.8 4.4 39 131-169 38-76 (156)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.0 8.8E-06 3E-10 59.1 5.0 37 132-168 63-99 (140)
100 2cpi_A CCR4-NOT transcription 98.0 5.8E-06 2E-10 59.3 3.9 38 132-169 15-55 (111)
101 2lea_A Serine/arginine-rich sp 97.9 7.6E-06 2.6E-10 61.3 4.5 49 131-179 46-96 (135)
102 2adc_A Polypyrimidine tract-bi 97.9 3.8E-06 1.3E-10 66.6 2.9 46 131-179 33-79 (229)
103 2cpx_A Hypothetical protein FL 97.9 6.1E-06 2.1E-10 58.6 3.6 49 129-179 22-74 (115)
104 2e44_A Insulin-like growth fac 97.9 4.7E-06 1.6E-10 57.4 2.9 37 131-167 14-50 (96)
105 1whx_A Hypothetical protein ri 97.9 4E-06 1.4E-10 60.6 2.6 44 132-179 10-53 (111)
106 1nu4_A U1A RNA binding domain; 97.9 2.2E-06 7.6E-11 59.0 1.2 35 131-165 7-45 (97)
107 2dnl_A Cytoplasmic polyadenyla 97.9 9E-06 3.1E-10 58.5 4.4 47 132-179 8-59 (114)
108 1p27_B RNA-binding protein 8A; 97.9 4.9E-06 1.7E-10 58.3 2.9 39 131-169 22-60 (106)
109 3zzy_A Polypyrimidine tract-bi 97.9 6.8E-06 2.3E-10 63.5 3.9 52 125-179 19-73 (130)
110 2e5j_A Methenyltetrahydrofolat 97.9 1.3E-05 4.3E-10 55.8 5.0 46 131-179 18-63 (97)
111 3ucg_A Polyadenylate-binding p 97.9 7.4E-06 2.5E-10 55.3 3.6 37 132-168 6-42 (89)
112 2cqp_A RNA-binding protein 12; 97.9 6.7E-06 2.3E-10 56.8 3.4 38 132-169 15-52 (98)
113 2dnn_A RNA-binding protein 12; 97.9 8.7E-06 3E-10 59.8 4.1 47 132-179 16-63 (109)
114 2dha_A FLJ20171 protein; RRM d 97.9 2.3E-06 7.9E-11 64.4 1.0 50 130-179 21-75 (123)
115 2dgt_A RNA-binding protein 30; 97.9 1.5E-05 5.2E-10 54.7 4.8 35 131-165 9-43 (92)
116 2cpd_A Apobec-1 stimulating pr 97.9 1.8E-05 6.1E-10 55.0 5.1 35 131-165 14-50 (99)
117 3ns6_A Eukaryotic translation 97.9 3.5E-06 1.2E-10 59.6 1.4 39 131-169 5-49 (100)
118 2xs2_A Deleted in azoospermia- 97.9 5.5E-06 1.9E-10 57.8 2.4 40 132-171 9-48 (102)
119 2dgu_A Heterogeneous nuclear r 97.9 8.9E-06 3E-10 57.1 3.5 34 132-165 11-44 (103)
120 2xnq_A Nuclear polyadenylated 97.9 9.8E-06 3.3E-10 57.1 3.7 35 130-164 20-55 (97)
121 1u6f_A Tcubp1, RNA-binding pro 97.9 7E-06 2.4E-10 60.2 3.1 40 130-169 40-79 (139)
122 2fc9_A NCL protein; structure 97.9 3.6E-05 1.2E-09 53.5 6.5 45 131-178 14-59 (101)
123 3p5t_L Cleavage and polyadenyl 97.9 6.7E-06 2.3E-10 56.6 2.8 47 133-179 2-52 (90)
124 1l3k_A Heterogeneous nuclear r 97.9 6.8E-06 2.3E-10 61.7 3.0 40 130-169 11-50 (196)
125 1wel_A RNA-binding protein 12; 97.9 1.8E-05 6.1E-10 57.6 5.1 52 128-179 21-74 (124)
126 2ek1_A RNA-binding protein 12; 97.9 4.6E-06 1.6E-10 57.2 1.8 38 132-169 15-52 (95)
127 2dis_A Unnamed protein product 97.9 4.7E-06 1.6E-10 58.6 1.9 34 132-165 8-42 (109)
128 2kvi_A Nuclear polyadenylated 97.9 1.2E-05 4.2E-10 55.9 4.0 35 131-165 9-44 (96)
129 1x4g_A Nucleolysin TIAR; struc 97.8 7.3E-06 2.5E-10 58.1 2.4 37 131-167 24-60 (109)
130 2hgl_A HNRPF protein, heteroge 97.8 2.4E-05 8.3E-10 59.7 5.5 49 131-179 43-95 (136)
131 3md1_A Nuclear and cytoplasmic 97.8 1.5E-05 5E-10 53.2 3.8 36 133-168 2-37 (83)
132 2f3j_A RNA and export factor b 97.8 1.3E-05 4.5E-10 62.9 3.8 50 130-179 86-136 (177)
133 2mss_A Protein (musashi1); RNA 97.8 1.3E-05 4.3E-10 52.9 3.2 35 134-168 1-35 (75)
134 2i2y_A Fusion protein consists 97.8 9.6E-06 3.3E-10 60.5 2.9 45 131-178 72-116 (150)
135 1p1t_A Cleavage stimulation fa 97.8 7.8E-06 2.7E-10 56.9 2.2 38 131-168 7-44 (104)
136 1iqt_A AUF1, heterogeneous nuc 97.8 8.1E-06 2.8E-10 53.7 2.1 35 134-168 1-35 (75)
137 2e5i_A Heterogeneous nuclear r 97.8 3E-05 1E-09 58.9 5.4 35 132-166 23-59 (124)
138 1rk8_A CG8781-PA, CG8781-PA pr 97.8 1.3E-05 4.5E-10 61.1 3.3 38 132-169 72-109 (165)
139 2jwn_A Embryonic polyadenylate 97.8 1E-05 3.6E-10 58.2 2.6 37 132-168 36-72 (124)
140 2hvz_A Splicing factor, argini 97.8 1.3E-05 4.3E-10 55.8 2.9 44 133-179 1-44 (101)
141 3egn_A RNA-binding protein 40; 97.8 1.1E-05 3.7E-10 59.8 2.6 50 129-179 42-99 (143)
142 3pgw_S U1-70K; protein-RNA com 97.7 1.7E-05 5.8E-10 70.7 4.1 50 130-179 100-151 (437)
143 2dnp_A RNA-binding protein 14; 97.7 1.6E-05 5.5E-10 54.4 3.0 35 131-165 8-42 (90)
144 1fjc_A Nucleolin RBD2, protein 97.7 8.7E-06 3E-10 56.0 1.6 32 131-165 15-46 (96)
145 3beg_B Splicing factor, argini 97.7 7.3E-06 2.5E-10 59.4 1.1 37 131-167 15-51 (115)
146 2kn4_A Immunoglobulin G-bindin 97.7 2.1E-05 7.3E-10 58.6 3.1 38 131-168 69-106 (158)
147 2cqh_A IGF-II mRNA-binding pro 97.7 1.6E-05 5.6E-10 54.5 2.2 34 131-164 7-41 (93)
148 2ki2_A SS-DNA binding protein 97.7 8E-06 2.7E-10 55.6 0.5 37 133-169 2-38 (90)
149 1fje_B Nucleolin RBD12, protei 97.7 4.9E-05 1.7E-09 56.4 4.9 45 131-179 98-143 (175)
150 3md3_A Nuclear and cytoplasmic 97.7 5.9E-05 2E-09 54.6 5.1 39 130-168 85-123 (166)
151 2e5g_A U6 snRNA-specific termi 97.7 4.2E-05 1.4E-09 52.8 4.1 31 132-162 8-38 (94)
152 2ghp_A U4/U6 snRNA-associated 97.6 1.9E-05 6.4E-10 63.7 2.5 49 131-179 40-88 (292)
153 1b7f_A Protein (SXL-lethal pro 97.6 6.3E-05 2.2E-09 54.9 4.9 37 132-168 89-125 (168)
154 1l3k_A Heterogeneous nuclear r 97.6 3.7E-05 1.3E-09 57.7 3.7 38 131-168 103-140 (196)
155 4f02_A Polyadenylate-binding p 97.6 2.1E-05 7.2E-10 61.6 2.3 48 132-179 103-150 (213)
156 2hzc_A Splicing factor U2AF 65 97.6 1.6E-05 5.6E-10 53.4 1.4 36 131-166 5-51 (87)
157 3nmr_A Cugbp ELAV-like family 97.6 3.8E-05 1.3E-09 56.2 3.2 42 131-172 94-135 (175)
158 2g4b_A Splicing factor U2AF 65 97.6 5.8E-05 2E-09 55.5 4.2 38 131-168 93-130 (172)
159 3n9u_C Cleavage and polyadenyl 97.6 2.6E-05 9E-10 60.1 2.3 37 132-168 55-93 (156)
160 2lcw_A RNA-binding protein FUS 96.7 1.1E-05 3.8E-10 57.8 0.0 37 132-168 7-51 (116)
161 1qm9_A Polypyrimidine tract-bi 97.6 0.00015 5.1E-09 55.0 6.3 45 132-179 120-165 (198)
162 2yh0_A Splicing factor U2AF 65 97.5 5.5E-05 1.9E-09 56.8 3.8 39 130-168 112-150 (198)
163 2qfj_A FBP-interacting repress 97.5 5.5E-05 1.9E-09 57.6 3.8 38 131-168 124-161 (216)
164 2jvr_A Nucleolar protein 3; RN 97.5 3.5E-05 1.2E-09 56.9 2.3 47 131-179 27-74 (111)
165 2qfj_A FBP-interacting repress 97.5 5.5E-05 1.9E-09 57.6 3.3 37 132-168 28-64 (216)
166 2a3j_A U1 small nuclear ribonu 97.5 7E-05 2.4E-09 56.4 3.8 48 131-179 28-79 (127)
167 3sde_A Paraspeckle component 1 97.5 0.00011 3.8E-09 59.3 5.1 45 131-179 21-65 (261)
168 3q2s_C Cleavage and polyadenyl 97.5 5.7E-05 2E-09 61.4 3.0 37 132-168 68-106 (229)
169 1fxl_A Paraneoplastic encephal 97.5 7.7E-05 2.6E-09 54.0 3.4 37 132-168 88-124 (167)
170 2adc_A Polypyrimidine tract-bi 97.4 9.6E-05 3.3E-09 58.5 4.0 44 132-178 151-195 (229)
171 1x5p_A Negative elongation fac 97.4 0.00027 9.2E-09 48.9 5.8 33 131-165 14-46 (97)
172 2voo_A Lupus LA protein; RNA-b 97.4 0.00011 3.9E-09 58.1 4.3 46 132-177 109-155 (193)
173 1sjr_A Polypyrimidine tract-bi 97.4 5.7E-05 1.9E-09 60.5 2.4 45 133-179 47-91 (164)
174 2cjk_A Nuclear polyadenylated 97.3 7.7E-05 2.6E-09 54.5 2.2 38 131-168 86-123 (167)
175 2bz2_A Negative elongation fac 97.3 0.00025 8.4E-09 52.3 4.9 44 130-179 37-80 (121)
176 3smz_A Protein raver-1, ribonu 97.3 0.00015 5.2E-09 58.2 4.0 33 131-164 21-53 (284)
177 1fj7_A Nucleolin RBD1, protein 97.3 3E-05 1E-09 53.9 -0.5 31 131-161 16-46 (101)
178 3smz_A Protein raver-1, ribonu 97.2 0.00032 1.1E-08 56.3 5.0 42 131-172 183-225 (284)
179 3sde_A Paraspeckle component 1 97.0 0.00046 1.6E-08 55.7 3.6 41 132-172 96-136 (261)
180 2cq2_A Hypothetical protein LO 97.0 0.00025 8.4E-09 53.5 1.8 36 131-166 24-61 (114)
181 3u1l_A PRE-mRNA-splicing facto 97.0 0.00035 1.2E-08 58.6 2.8 44 132-179 134-186 (240)
182 2ghp_A U4/U6 snRNA-associated 96.9 0.00046 1.6E-08 55.6 2.9 39 131-169 209-248 (292)
183 2diu_A KIAA0430 protein; struc 96.7 0.0012 4.1E-08 49.4 3.6 34 127-162 5-44 (96)
184 1fje_B Nucleolin RBD12, protei 96.5 0.00036 1.2E-08 51.6 -0.5 32 130-161 11-42 (175)
185 1owx_A Lupus LA protein, SS-B, 96.4 0.0023 7.8E-08 49.0 3.4 43 125-169 13-56 (121)
186 2wbr_A GW182, gawky, LD47780P; 96.1 0.0013 4.4E-08 48.4 0.8 35 132-166 7-41 (89)
187 3tht_A Alkylated DNA repair pr 96.0 0.0039 1.3E-07 54.8 3.3 36 131-166 17-54 (345)
188 2dit_A HIV TAT specific factor 95.8 0.022 7.6E-07 40.5 6.1 47 131-179 14-71 (112)
189 2d9o_A DNAJ (HSP40) homolog, s 95.1 0.022 7.6E-07 41.2 4.1 45 132-179 10-61 (100)
190 2pe8_A Splicing factor 45; RRM 94.4 0.032 1.1E-06 40.3 3.4 37 131-167 7-48 (105)
191 1whv_A Poly(A)-specific ribonu 94.0 0.086 2.9E-06 39.9 5.2 38 127-166 11-48 (100)
192 2j8a_A Histone-lysine N-methyl 93.2 0.08 2.7E-06 41.8 4.0 38 133-170 3-44 (136)
193 3v4m_A Splicing factor U2AF 65 89.0 0.24 8.1E-06 35.5 2.6 39 131-169 4-52 (105)
194 3ctr_A Poly(A)-specific ribonu 87.4 0.4 1.4E-05 36.2 3.1 33 132-166 6-38 (101)
195 2dhx_A Poly (ADP-ribose) polym 85.9 0.57 2E-05 35.5 3.2 24 132-155 8-31 (104)
196 3ue2_A Poly(U)-binding-splicin 85.3 0.37 1.3E-05 35.6 1.9 39 131-169 19-62 (118)
197 1uw4_A UPF3X; nonsense mediate 82.6 1.3 4.5E-05 32.2 3.8 37 134-170 3-39 (91)
198 1wey_A Calcipressin 1; structu 76.1 2.4 8.1E-05 31.9 3.5 33 133-165 6-52 (104)
199 2l08_A Regulator of nonsense t 72.4 2.7 9.2E-05 31.2 3.0 39 132-170 9-47 (97)
200 1jmt_A Splicing factor U2AF 35 71.6 0.5 1.7E-05 33.6 -1.1 35 137-171 20-66 (104)
201 3s6e_A RNA-binding protein 39; 68.3 11 0.00037 27.4 5.6 49 129-179 4-62 (114)
202 2l9w_A U4/U6 snRNA-associated- 49.1 15 0.00051 28.4 3.5 37 131-167 20-61 (117)
203 2dnr_A Synaptojanin-1; RRM dom 28.5 34 0.0012 24.8 2.4 40 127-168 4-51 (91)
No 1
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.47 E-value=1.7e-07 Score=65.83 Aligned_cols=44 Identities=27% Similarity=0.533 Sum_probs=38.1
Q ss_pred CCCCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 125 VPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 125 ~~lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
.+.|+.++++|||.|||.++|+++|..+|.+| |.++|+++..+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~ 51 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKD 51 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSS
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCC
Confidence 34445568999999999999999999999999 799999997653
No 2
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=2.3e-07 Score=67.49 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++.. +|-.||-|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef 58 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLEL 58 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEE
Confidence 4899999999999999999999999999999998864 34455543
No 3
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=70.24 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCcccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~ 178 (179)
|+++|||.|||.++|+++|..||.+|...++|++++. +|-.||.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVe 63 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVE 63 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEE
Confidence 3999999999999999999999999999999999852 3455543
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=3.9e-07 Score=66.45 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
+++|||.|||.++|+++|..+|.+|...++|++++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 899999999999999999999999999999999863
No 5
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=6.1e-07 Score=62.80 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=41.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.+..|-.+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f 62 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF 62 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEE
Confidence 4789999999999999999999999999999999987665455555543
No 6
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=5.4e-07 Score=63.37 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=36.9
Q ss_pred CCCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 126 ~lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+.|..+.++|||.|||.++|+++|..+|.+|. .++|+++..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~ 51 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS 51 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC
Confidence 34444589999999999999999999999996 99999987653
No 7
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=3.3e-07 Score=64.16 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=42.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.+.+|-.+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f 62 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF 62 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEE
Confidence 4789999999999999999999999999999999987666555555543
No 8
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.36 E-value=4.4e-07 Score=64.71 Aligned_cols=52 Identities=19% Similarity=0.512 Sum_probs=42.4
Q ss_pred CCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 127 lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+|++++++|||.|||.++|+++|..+|.+|...++|+++.... ..|-.+|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f 54 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVY 54 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEE
Confidence 4566799999999999999999999999999999999985433 245555543
No 9
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.35 E-value=1.6e-06 Score=62.03 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=35.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 76 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK 76 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 48899999999999999999999999999999998654
No 10
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=5.9e-07 Score=68.05 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=39.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++.. +|-.||.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF 74 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEM 74 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEE
Confidence 3899999999999999999999999999999999864 34556544
No 11
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=5.7e-07 Score=66.02 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCCCCeEEecCCCC-cccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 129 PDASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 129 pdpn~iLFVqNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+++++|||.|||. ++|+++|..||.+|...++|+++..+ |-.||-|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef 59 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEM 59 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEE
Confidence 34589999999999 99999999999999999999998532 4455543
No 12
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=1.3e-06 Score=61.89 Aligned_cols=48 Identities=17% Similarity=0.489 Sum_probs=39.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|++...+. .+|-.+|.|
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f 68 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEF 68 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEE
Confidence 488999999999999999999999999999999965432 345555543
No 13
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=9e-07 Score=60.48 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=39.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++.. .+|-.+|.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f 49 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTF 49 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEE
Confidence 3789999999999999999999999999999999853 345566554
No 14
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=9.4e-07 Score=59.70 Aligned_cols=39 Identities=15% Similarity=0.420 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 41 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 41 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 358899999999999999999999999999999998764
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-06 Score=59.48 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=35.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 53 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD 53 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 88999999999999999999999999999999987654
No 16
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.28 E-value=5.6e-07 Score=61.46 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=38.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFL 177 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~ 177 (179)
++++|||.|||.++|+++|..+|.+|...++|+++....+.+|-.+|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV 53 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVV 53 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEE
Confidence 48899999999999999999999999999999999743322333443
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=9.7e-07 Score=61.78 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=36.0
Q ss_pred CCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 129 pdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
+.++.+|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 345889999999999999999999999999999999976
No 18
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.28 E-value=9.8e-07 Score=61.52 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcce--------EEeeeccC
Q 030341 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKES 169 (179)
Q Consensus 127 lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~r~ 169 (179)
.|+.++.+|||.|||.++|+++|..+|.+|...++ |+++..+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 58 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE 58 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC
Confidence 33445899999999999999999999999999999 99997643
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=60.25 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=35.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 42 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD 42 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC
Confidence 488999999999999999999999999999999987643
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.27 E-value=1.9e-06 Score=61.49 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 61 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 37899999999999999999999999999999999765
No 21
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1.7e-06 Score=61.45 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcce-EEeeeccCCCCCC-cccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHVSM-IFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE-VRLVp~r~~~~gg-~~~~ 178 (179)
.+.+|||.|||.++|+++|..+|.+|...++ |+|+..+.+++.| .+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~ 63 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQ 63 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEE
Confidence 4789999999999999999999999988887 8888665555443 4443
No 22
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=3.8e-07 Score=67.97 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=38.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++.. +|=.||-|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF 59 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEM 59 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEE
Confidence 4889999999999999999999999999999999864 34455443
No 23
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.4e-06 Score=62.49 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=41.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..+.+.+|-.+|.|
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f 76 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF 76 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEE
Confidence 4889999999999999999999999999999999977655455555544
No 24
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.23 E-value=2.4e-06 Score=59.81 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 54 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS 54 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC
Confidence 48899999999999999999999999999999999876543
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=1.4e-06 Score=61.04 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=35.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 3889999999999999999999999999999999876
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=1.8e-06 Score=60.37 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 50 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH 50 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 389999999999999999999999999999999987543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.22 E-value=3e-07 Score=64.44 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=38.3
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCC-CcceEEeeeccC-CCC-CCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKES-RHV-SMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r~-~~~-gg~~~~~ 179 (179)
+|+|||.|||.++|+++|..+|.+|. -.++||++..+. +++ |=.+|-|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F 51 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEF 51 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEe
Confidence 58999999999999999999999997 699999987543 233 3345444
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=1.6e-06 Score=61.06 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=35.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD 52 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 488999999999999999999999999999999986544
No 29
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=2.1e-06 Score=58.78 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=39.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
..++|||.|||.++|+++|..+|.+| ..++|+++..+.+++ |-.+|.|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f 57 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDF 57 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEEC
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEE
Confidence 47899999999999999999999999 999999998754443 3344433
No 30
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=3.5e-06 Score=58.70 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=33.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
+++|||.|||.++|+++|..+|.+|...++|+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 49 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK 49 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec
Confidence 88999999999999999999999999999999984
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.1e-06 Score=60.12 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
.++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 52 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 52 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC
Confidence 3489999999999999999999999999999999987644
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2.6e-06 Score=59.23 Aligned_cols=41 Identities=29% Similarity=0.617 Sum_probs=37.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 56 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGK 56 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence 37899999999999999999999999999999999877443
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=2.2e-06 Score=59.50 Aligned_cols=38 Identities=29% Similarity=0.604 Sum_probs=35.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 46 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 46 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 48899999999999999999999999999999998754
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.18 E-value=1.3e-06 Score=59.16 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=35.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 48 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 48 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC
Confidence 478999999999999999999999999999999987643
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.17 E-value=5.9e-07 Score=65.07 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=39.9
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+..|||.|||.++|+++|..+|.+|.-.++|+++..+.+.+|-.||-|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f 52 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 52 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEE
Confidence 567999999999999999999999999999999986655444455543
No 36
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.16 E-value=8.2e-07 Score=62.53 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=33.1
Q ss_pred CCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 129 pdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+...++|||.|||.++|+++|..+|.+|. .++|+++..+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 54 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence 34589999999999999999999999997 9999998765
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=7.3e-07 Score=61.71 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=35.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 378999999999999999999999999999999997654
No 38
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=3.1e-06 Score=63.46 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=38.0
Q ss_pred CCeEEecCCCCc-ccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+++|||.|||.+ +|+++|..+|.+|...++|+|+.. +|-.||-|
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef 69 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEM 69 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEEC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEE
Confidence 899999999998 999999999999999999999742 35566544
No 39
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=3.9e-06 Score=60.12 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=38.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCC-ccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSM-IFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg-~~~~~ 179 (179)
..++|||.|||.++|+++|..+|.+|. -++|+|+..+.+++.| .+|.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F 62 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEF 62 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEE
Confidence 368999999999999999999999987 6799999776554433 44443
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.15 E-value=1.6e-06 Score=60.87 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
++++|||.|||.++|+++|..+|.+|.-.++|+++..+.++
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 68 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR 68 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC
Confidence 48999999999999999999999999999999999776544
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2.3e-06 Score=59.80 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=35.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 51 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 51 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC
Confidence 48999999999999999999999999999999998764
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.14 E-value=2e-06 Score=61.77 Aligned_cols=48 Identities=10% Similarity=0.371 Sum_probs=37.7
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCC--cceEEeeeccC-CC-CCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKES-RH-VSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpG--FkEVRLVp~r~-~~-~gg~~~~~ 179 (179)
=++|||.|||.++|+++|..+|.+|.. .++||++..+. ++ +|=.||.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f 60 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQL 60 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEEC
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEE
Confidence 579999999999999999999999984 67999987543 22 33345443
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=4.3e-06 Score=59.25 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+.++
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~ 54 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK 54 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC
Confidence 8899999999999999999999999999999999866543
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.12 E-value=1.7e-06 Score=60.62 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=35.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 50 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 50 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Confidence 488999999999999999999999999999999987543
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.12 E-value=1.7e-06 Score=59.97 Aligned_cols=38 Identities=8% Similarity=0.244 Sum_probs=35.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
|+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 38 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP 38 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 37899999999999999999999999999999998764
No 46
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.12 E-value=2.5e-06 Score=62.84 Aligned_cols=49 Identities=14% Similarity=0.359 Sum_probs=39.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcce--EEeeecc-CCC-CCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKE-SRH-VSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE--VRLVp~r-~~~-~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++ ||++..+ .++ +|-.||.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f 74 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQL 74 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEE
Confidence 3889999999999999999999999999976 9999766 332 34455544
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=3.8e-06 Score=58.74 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR 51 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 48999999999999999999999999999999998765
No 48
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.11 E-value=8.3e-07 Score=70.78 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCc--ceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGF--kEVRLVp~r~~~~gg~~~~~ 179 (179)
+++|||.|||.++|+++|..||++|... ++|++++.+.+++|-.+|.|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f 172 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 172 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEEC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEe
Confidence 8999999999999999999999999998 99999988755556666654
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.11 E-value=1.2e-06 Score=59.07 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=35.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++.+|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM 42 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 48899999999999999999999999999999999764
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2.3e-06 Score=59.80 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCC-CCCcceEEeeeccCCC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRH 171 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~q-FpGFkEVRLVp~r~~~ 171 (179)
.++.+|||.|||.++|+++|..+|.+ |...++|+++..+.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~ 49 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGV 49 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence 34889999999999999999999999 9999999999876443
No 51
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=3.9e-06 Score=58.22 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=34.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 3789999999999999999999999999999999864
No 52
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.11 E-value=2.8e-06 Score=60.57 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=39.7
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCC---cceEEeeeccCCCCC-CccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHVS-MIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r~~~~g-g~~~~~ 179 (179)
+...+|||.|||.++|+++|..+|.+|.- .++|+|+..+.+++. -.+|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F 62 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEM 62 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEB
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEE
Confidence 45789999999999999999999999755 799999976654443 345443
No 53
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=4.4e-06 Score=59.73 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=35.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 53 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC
Confidence 38899999999999999999999999999999998764
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=2e-06 Score=59.54 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 44 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 44 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 47899999999999999999999999999999998765
No 55
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.09 E-value=2.6e-06 Score=61.22 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=38.6
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC--CCCCCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES--RHVSMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~--~~~gg~~~~~ 179 (179)
.++++|||.|||.++|+++|..+|.+|...++|+++..+. +.+|-.||.|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f 74 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 74 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEE
Confidence 3578999999999999999999999999999999987643 2234445433
No 56
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.09 E-value=1.6e-06 Score=58.49 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=36.2
Q ss_pred CCeEEecCCCCcc------cHHHHHhhcCCCCCcceEEeeeccCCCCCCccc
Q 030341 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHVSMIFL 177 (179)
Q Consensus 132 n~iLFVqNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~ 177 (179)
+++|||.|||.++ |+++|..+|.+|...++|+++....+.+|-.+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV 52 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFL 52 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEE
Confidence 4689999999999 789999999999999999988432222343444
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.09 E-value=1.7e-06 Score=58.05 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=34.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~ 42 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 42 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence 4899999999999999999999999999999999865
No 58
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.8e-06 Score=58.51 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++ +.+|-.+|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f 70 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKY 70 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEEC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEE
Confidence 37899999999999999999999999999999998 2345555544
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=2.7e-06 Score=58.91 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcc-eEEeeecc
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKE 168 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFk-EVRLVp~r 168 (179)
.++++|||.|||.++|+++|..+|.+|...+ +|+++..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR 46 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence 3488999999999999999999999999999 99999765
No 60
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=2.9e-06 Score=59.33 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 52 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 378999999999999999999999999999999987643
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=6e-06 Score=57.44 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 49 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 49 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC
Confidence 488999999999999999999999999999999987533
No 62
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=8.3e-06 Score=58.72 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCc-ceEEeeeccCCC-CCCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRH-VSMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGF-kEVRLVp~r~~~-~gg~~~~~ 179 (179)
.++++|||.|||.++|+++|..+|.+|.-. .+|+|+..+.++ +|-.||.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F 64 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQF 64 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEE
Confidence 347899999999999999999999999444 459998766444 34455544
No 63
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=7.1e-06 Score=57.05 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.++++|||.|||.++|+++|..+|.+ |.+|+++..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~---~~~~~~~~~~ 48 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDR 48 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTT---CSEEEEEECS
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcC---CeEEEEEecC
Confidence 34899999999999999999999995 4799998764
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=2.6e-06 Score=58.40 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=33.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+|...++|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 48899999999999999999999999999999997
No 65
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.07 E-value=2.6e-06 Score=59.53 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=38.1
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.++|||.|||.++|+++|..+|.+|...++|+++.. .+|=.||.|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F 55 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTF 55 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEE
Confidence 689999999999999999999999999999999862 345555543
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.06 E-value=2.4e-06 Score=58.60 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~ 55 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK 55 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC
Confidence 48899999999999999999999999999999999865543
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=5.1e-06 Score=58.26 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+.++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 53 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 53 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC
Confidence 378999999999999999999999999999999988643
No 68
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.06 E-value=3.1e-06 Score=58.11 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=36.1
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+.+|||.|||.++|+++|..+|.+| ..++|++. +.+|-.++.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f 47 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTL 47 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEE
Confidence 6799999999999999999999999 99999995 3345555544
No 69
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.06 E-value=3.4e-06 Score=60.06 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=35.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++.+|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM 51 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 48999999999999999999999999999999999764
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.06 E-value=3.3e-06 Score=61.03 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=39.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc-CCC-CCCcccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRH-VSMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r-~~~-~gg~~~~ 178 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+ .++ .|-.+|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 70 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 70 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEE
Confidence 37899999999999999999999999999999998654 222 3444443
No 71
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=3e-06 Score=60.38 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=34.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 4789999999999999999999999999999998764
No 72
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=4.2e-06 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
+++|||.|||.++|+++|..+|.+|...++|+++.
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 78999999999999999999999999999999986
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.05 E-value=4.6e-06 Score=62.17 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=36.2
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 83 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 83 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 3488999999999999999999999999999999986543
No 74
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.05 E-value=1.8e-06 Score=67.75 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 126 PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 126 ~lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
..|..|+.+|||.|||.++|+++|..+|.+|.-.++|+++..+.
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 52 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI 52 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC
Confidence 33444588999999999999999999999999999999997543
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=2.7e-06 Score=61.45 Aligned_cols=48 Identities=13% Similarity=0.390 Sum_probs=39.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
+++|||.|||.++|+++|..+|.+|.-..+|+|+..+.+++ |-.||.|
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F 59 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVF 59 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEE
Confidence 68999999999999999999999999999999997554433 3344443
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=5.2e-06 Score=57.76 Aligned_cols=49 Identities=24% Similarity=0.429 Sum_probs=39.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCC--CCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR--HVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~--~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.+ ..|-.+|.|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f 61 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 61 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEE
Confidence 3789999999999999999999999999999999875432 233444443
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=7.7e-06 Score=58.02 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=34.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcc--------eEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFk--------EVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|.-.+ +|+++..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~ 59 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK 59 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC
Confidence 488999999999999999999999998888 69998763
No 78
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.03 E-value=2.8e-06 Score=60.58 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=34.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
..+|||.|||.++|+++|..+|++|...++|+++..+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 56 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV 56 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC
Confidence 45799999999999999999999999999999997543
No 79
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.03 E-value=3.5e-06 Score=59.91 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCCeEEecCCCCcc------cHHHHHhhcCCCCCcceEEeeeccCCC-CCCcccc
Q 030341 131 ASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRH-VSMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~-~gg~~~~ 178 (179)
.+++|||.|||.++ |+++|..+|.+|...++|+++. ..++ +|-.+|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g~~~G~afV~ 67 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTKGYIFLE 67 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTTBSCCEEEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCCCeeeEEEEE
Confidence 47899999999999 8899999999999999999983 3333 3444443
No 80
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=3.4e-06 Score=57.92 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=34.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceE-Eeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEV-RLVp~ 167 (179)
++++|||.|||.++|+++|..+|.+|.-.++| +++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~ 41 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD 41 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence 38899999999999999999999999999999 98875
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=4.9e-06 Score=59.28 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=39.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC--CCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES--RHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~--~~~gg~~~~~ 179 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..+. +.+|-.+|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f 74 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 74 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEe
Confidence 367999999999999999999999999999999986553 2334455443
No 82
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.02 E-value=5.3e-06 Score=63.75 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=39.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
..++|||.|||.++|+++|..+|.+|. -++|+|+..+.+++ |-.||.|
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F 93 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEF 93 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEe
Confidence 367999999999999999999999997 88999987655444 4455544
No 83
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.01 E-value=7.2e-06 Score=62.26 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=38.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcc--eEEeeeccCCCCC-Ccccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHVS-MIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFk--EVRLVp~r~~~~g-g~~~~ 178 (179)
...+|||.|||.+||+++|..+|.+| +.+ +|+++..+.+++. -.||.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~ 90 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQ 90 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEE
Confidence 37899999999999999999999999 998 8999865555443 34443
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.01 E-value=3e-06 Score=59.87 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 62 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 62 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 47899999999999999999999999999999998654
No 85
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.00 E-value=8.2e-06 Score=59.35 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=40.8
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
++.++|||.|||.++|+++|..+|.+|...++|+++..+.+++ |-.+|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F 55 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITF 55 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEE
Confidence 3478999999999999999999999999999999998764443 3344433
No 86
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.00 E-value=8.4e-06 Score=59.47 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=39.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCC---cceEEeeeccCCCCC-Ccccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHVS-MIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r~~~~g-g~~~~ 178 (179)
...+|||.|||.++|+++|..+|.+|.- .++|+|+..+.+++. -.+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~ 67 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVE 67 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEE
Confidence 4789999999999999999999999866 899999976655433 34443
No 87
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.00 E-value=1.1e-05 Score=57.17 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCCeEEecCCCCc-ccHHHHHhhcCCCCCcceEEe
Q 030341 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRL 164 (179)
Q Consensus 131 pn~iLFVqNLP~d-~T~~eL~~LF~qFpGFkEVRL 164 (179)
++++|||.|||.+ +|+++|..+|.+|...++|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 4789999999999 999999999999999999998
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.00 E-value=2.7e-06 Score=57.21 Aligned_cols=38 Identities=11% Similarity=0.294 Sum_probs=35.1
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 41 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM 41 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence 57999999999999999999999999999999987653
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.2e-05 Score=57.06 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=36.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
..+|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~ 64 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT 64 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC
Confidence 7899999999999999999999999999999999876443
No 90
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.99 E-value=7.6e-06 Score=58.97 Aligned_cols=35 Identities=37% Similarity=0.682 Sum_probs=33.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+|...++|+++
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 48899999999999999999999999999999998
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=5.9e-06 Score=54.44 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=33.0
Q ss_pred eEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 134 iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 36 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 36 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 69999999999999999999999999999998764
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.98 E-value=1.1e-05 Score=58.04 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 62 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 62 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 47899999999999999999999999999999998754
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=3.8e-06 Score=58.65 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=40.2
Q ss_pred CCCeEEecCCCCcccHHHHH----hhcCCCCCcceEEeeeccCCCCCCcccc
Q 030341 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHVSMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~----~LF~qFpGFkEVRLVp~r~~~~gg~~~~ 178 (179)
.+.+|||.|||.++|+++|. .+|.+|.-.++|+++..+.+ +|-.+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~ 58 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQ 58 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEE
Confidence 37899999999999999999 99999999999999977665 5545543
No 94
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=8.3e-06 Score=58.25 Aligned_cols=49 Identities=12% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC-C-CCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES-R-HVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~-~-~~gg~~~~~ 179 (179)
+.++|||.|||.++|+++|..+|.+|...++|+++..+. + .+|-.+|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f 76 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 76 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEe
Confidence 468999999999999999999999999999999997643 2 234455544
No 95
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.97 E-value=5.8e-06 Score=66.42 Aligned_cols=46 Identities=33% Similarity=0.639 Sum_probs=39.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|.+|...++|++++.+ +|-.+|.|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f 251 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEF 251 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEe
Confidence 38999999999999999999999999999999999655 34555543
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.97 E-value=9e-06 Score=58.85 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=37.7
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
+++++|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~ 74 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGR 74 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC
Confidence 358899999999999999999999999999999999876443
No 97
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.97 E-value=5.2e-06 Score=60.47 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=35.2
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
.++|||.|||.++|+++|..+|.+|.-.++|+++-.+.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~ 43 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR 43 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC
Confidence 78999999999999999999999999999999986544
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.97 E-value=6.4e-06 Score=61.84 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 76 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM 76 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 489999999999999999999999999999999987654
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.96 E-value=8.8e-06 Score=59.07 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=34.8
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~ 99 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY 99 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC
Confidence 7899999999999999999999999999999998763
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=5.8e-06 Score=59.29 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=35.3
Q ss_pred CCeEEecCCCCcccHHHHH---hhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~---~LF~qFpGFkEVRLVp~r~ 169 (179)
.++|||.|||.++|+++|. .+|.+|...++|+++..+.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS 55 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC
Confidence 7899999999999999999 9999999999999987654
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.94 E-value=7.6e-06 Score=61.26 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC--CCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES--RHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~--~~~gg~~~~~ 179 (179)
++.+|||.|||.++|+++|..+|.+|...++|+++..+. +.+|-.+|.|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F 96 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 96 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEE
Confidence 388999999999999999999999999999999986542 2334455544
No 102
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.93 E-value=3.8e-06 Score=66.57 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCeEEecCCCC-cccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||. ++|+++|..+|.+|...++|+++..+ +|-.+|.|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F 79 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQM 79 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEE
Confidence 499999999999 99999999999999999999999755 34455543
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=6.1e-06 Score=58.56 Aligned_cols=49 Identities=16% Similarity=0.420 Sum_probs=37.3
Q ss_pred CCCCCeEEecCCCCcccHHHHHhhcCCCCCc----ceEEeeeccCCCCCCccccC
Q 030341 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 129 pdpn~iLFVqNLP~d~T~~eL~~LF~qFpGF----kEVRLVp~r~~~~gg~~~~~ 179 (179)
..++++|||.|||.++|+++|..+|.+|... ..++++.+++ +|-.+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~--~g~afV~f 74 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM--RGQAFITF 74 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS--CSEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc--ceEEEEEE
Confidence 3458999999999999999999999999877 5666663333 34555544
No 104
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.7e-06 Score=57.40 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
.+.+|||.|||.++|+++|..+|.+|...++||.|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~ 50 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT 50 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 3789999999999999999999999999999974443
No 105
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.93 E-value=4e-06 Score=60.57 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+++|||.|||.++|+++|..+|.+|...++|+|++ .+|-.||.|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f 53 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEF 53 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEe
Confidence 67999999999999999999999999999999875 234455443
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.92 E-value=2.2e-06 Score=58.98 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCCeEEecCCCCcccHHHHH----hhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~----~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|. .+|.+|...++|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 38999999999999999999 999999999999987
No 107
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=9e-06 Score=58.52 Aligned_cols=47 Identities=36% Similarity=0.528 Sum_probs=37.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCC-----CCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR-----HVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~-----~~gg~~~~~ 179 (179)
+++|||.|||.++|+++|..+|.+|...+ ++++..+.+ .+|-.||.|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f 59 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLF 59 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEE
Confidence 67899999999999999999999998887 888765542 244555554
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=4.9e-06 Score=58.27 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=35.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 60 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR 60 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Confidence 478999999999999999999999999999999987544
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.92 E-value=6.8e-06 Score=63.45 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCCCCCCCeEE--ecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCC-ccccC
Q 030341 125 VPLPPDASSTLF--VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSM-IFLLF 179 (179)
Q Consensus 125 ~~lPpdpn~iLF--VqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg-~~~~~ 179 (179)
..+++.+|++|+ |.||+..+|+++|..||++|...++|+++... +|. .||.|
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef 73 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQY 73 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEE
Confidence 335555588887 99999999999999999999999999998632 344 55543
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=1.3e-05 Score=55.76 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+++|||.|||.++|+++|..+|.+|...+ ++++..++ +|-.+|.|
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~--~g~afV~f 63 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGP--RRRAFLHY 63 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETT--TTEEEEEC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCC--CcEEEEEE
Confidence 478999999999999999999999998776 88886543 44555544
No 111
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.91 E-value=7.4e-06 Score=55.33 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK 42 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence 5799999999999999999999999999999998764
No 112
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=6.7e-06 Score=56.80 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~ 52 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC
Confidence 78999999999999999999999999888888876543
No 113
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=8.7e-06 Score=59.83 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=38.9
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
..+|||.|||.++|+++|..+|.+| +.++|+|+..+.+++ |-.+|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F 63 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKF 63 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEE
Confidence 5799999999999999999999999 999999997655543 4455544
No 114
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=2.3e-06 Score=64.40 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCC----cceEEeeeccCCCC-CCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG----YKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpG----FkEVRLVp~r~~~~-gg~~~~~ 179 (179)
....+|||.|||.+||+++|..+|.+|.. .++|+|+..+.+++ |-.||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F 75 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLF 75 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEE
Confidence 34789999999999999999999999965 47999997655543 4455544
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.5e-05 Score=54.72 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=33.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+|...++|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~ 43 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV 43 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 48899999999999999999999999999999987
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.8e-05 Score=55.05 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCC--CCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qF--pGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+| .-.++|++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~ 50 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI 50 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe
Confidence 48999999999999999999999999 666666653
No 117
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.87 E-value=3.5e-06 Score=59.59 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCCeEEecCCCC------cccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~------d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
.+++|||.|||. ++|+++|..+|.+|.-.++|+++..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~ 49 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA 49 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC
Confidence 378999999999 999999999999999999999986654
No 118
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.87 E-value=5.5e-06 Score=57.80 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=36.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 171 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+.++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 48 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGV 48 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence 6899999999999999999999999999999999876443
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.87 E-value=8.9e-06 Score=57.13 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
+++|||.|||.++|+++|..+|.+|...++|+++
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 44 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL 44 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 7899999999999999999999999999999987
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.87 E-value=9.8e-06 Score=57.10 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=32.8
Q ss_pred CCCCeEEecCCCC-cccHHHHHhhcCCCCCcceEEe
Q 030341 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRL 164 (179)
Q Consensus 130 dpn~iLFVqNLP~-d~T~~eL~~LF~qFpGFkEVRL 164 (179)
.++++|||.|||. ++|+++|..+|.+|...++|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 3589999999998 9999999999999999999998
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.87 E-value=7e-06 Score=60.19 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=36.4
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++.++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 79 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE 79 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 4578999999999999999999999999999999987654
No 122
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=3.6e-05 Score=53.51 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCcccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~ 178 (179)
++++|||.|||.++|+++|..+|.+| -+|+++....+++ |-.+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~~~~~g~~~g~afV~ 59 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIE 59 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSC---SEEECCBCSSSCBCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC---CEEEEEECCCCCEeeEEEEE
Confidence 48999999999999999999999985 5788776644433 334443
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.86 E-value=6.7e-06 Score=56.63 Aligned_cols=47 Identities=6% Similarity=0.165 Sum_probs=36.6
Q ss_pred CeEEecCCCCcccHHHHHhhcCCCC--CcceEEeeeccC-CCC-CCccccC
Q 030341 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKES-RHV-SMIFLLF 179 (179)
Q Consensus 133 ~iLFVqNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r~-~~~-gg~~~~~ 179 (179)
.+|||.|||.++|+++|..+|.+|. ..++|+++..+. +++ |-.++.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f 52 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGV 52 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEE
Confidence 4799999999999999999999999 899999998643 332 3345444
No 124
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.86 E-value=6.8e-06 Score=61.71 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
.++++|||.|||.++|+++|..+|.+|.-.++|+++..+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 50 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN 50 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC
Confidence 3488999999999999999999999999999999997643
No 125
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.8e-05 Score=57.58 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=38.2
Q ss_pred CCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee-ccCCC-CCCccccC
Q 030341 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS-KESRH-VSMIFLLF 179 (179)
Q Consensus 128 Ppdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp-~r~~~-~gg~~~~~ 179 (179)
|.....+|||.|||.++|+++|..+|.+|.-.++|.++. ...++ +|-.||.|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F 74 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEF 74 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEE
Confidence 344578999999999999999999999998888855554 33333 33355443
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.86 E-value=4.6e-06 Score=57.16 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~ 52 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC
Confidence 68999999999999999999999999998888887544
No 127
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=4.7e-06 Score=58.63 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCC-cceEEee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV 165 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpG-FkEVRLV 165 (179)
+++|||.|||.++|+++|..+|.+|.. .++|+++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~ 42 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY 42 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE
Confidence 789999999999999999999999976 9999998
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.2e-05 Score=55.87 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=32.8
Q ss_pred CCCeEEecCCCC-cccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~-d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||. ++|+++|..+|.+|...++|++.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 389999999998 99999999999999999999984
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=7.3e-06 Score=58.12 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=34.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 3789999999999999999999999999999999864
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.82 E-value=2.4e-05 Score=59.72 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=39.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCC---cceEEeeeccCCCC-CCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r~~~~-gg~~~~~ 179 (179)
...+|||.|||.++|+++|..+|.+|.- .++|+++..+.+++ |-.||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F 95 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVEL 95 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEE
Confidence 3789999999999999999999999976 89999997655444 3344443
No 131
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.82 E-value=1.5e-05 Score=53.19 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=33.4
Q ss_pred CeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 133 ~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.+|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 37 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 37 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence 479999999999999999999999999999998663
No 132
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.80 E-value=1.3e-05 Score=62.89 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~~~ 179 (179)
.++.+|||.|||.++|+++|..+|.+|...++|+++..+.+++ |-.+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F 136 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF 136 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEe
Confidence 3588999999999999999999999999999999987664433 4455543
No 133
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.80 E-value=1.3e-05 Score=52.89 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=32.5
Q ss_pred eEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 134 iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK 35 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 38999999999999999999999999999998765
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.80 E-value=9.6e-06 Score=60.49 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCcccc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLL 178 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~ 178 (179)
++++|||.|||.++|+++|..+|.+|...++|+++.. .+|-.+|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~ 116 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVE 116 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEE
Confidence 4889999999999999999999999999999999864 24445543
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=7.8e-06 Score=56.87 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=35.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 44 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 44 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC
Confidence 37899999999999999999999999999999999764
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.79 E-value=8.1e-06 Score=53.67 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=32.3
Q ss_pred eEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 134 iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 35 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 58999999999999999999999999999998654
No 137
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.78 E-value=3e-05 Score=58.86 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=32.6
Q ss_pred CCeE--EecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 132 SSTL--FVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 132 n~iL--FVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
|++| ||.|||..+|+++|..||.+|...++|+++.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 8886 5899999999999999999999999999976
No 138
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.77 E-value=1.3e-05 Score=61.07 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=35.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
+++|||.|||.++|+++|..+|.+|...++|+|+..+.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~ 109 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR 109 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC
Confidence 78999999999999999999999999999999997643
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.77 E-value=1e-05 Score=58.18 Aligned_cols=37 Identities=5% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 72 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK 72 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 6899999999999999999999999999999998753
No 140
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.77 E-value=1.3e-05 Score=55.83 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=36.6
Q ss_pred CeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 133 ~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+|||.|||.++|+++|..+|.+|...++|+++.. .+|-.+|-|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f 44 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEF 44 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEE
Confidence 37999999999999999999999999999999876 344444433
No 141
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=59.77 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=38.0
Q ss_pred CCCCCeEEecCCCCcccHHHHHhhcCCCCCcce--------EEeeeccCCCCCCccccC
Q 030341 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 129 pdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~r~~~~gg~~~~~ 179 (179)
..++++|||.|||.++|+++|..+|.+|...++ |++.. ..+.+|-.||.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f 99 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGL 99 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEe
Confidence 345899999999999999999999999988876 44432 233355666654
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.74 E-value=1.7e-05 Score=70.68 Aligned_cols=50 Identities=22% Similarity=0.368 Sum_probs=41.5
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc--CCCCCCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHVSMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r--~~~~gg~~~~~ 179 (179)
+++++|||.|||.+||+++|..+|.+|...++|+|+..+ .+..|-.||.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F 151 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEee
Confidence 347899999999999999999999999999999998653 22345667665
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=1.6e-05 Score=54.36 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=33.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+|...++|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~ 42 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV 42 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE
Confidence 47899999999999999999999999999999987
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.74 E-value=8.7e-06 Score=56.02 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|||.++|+++|..+|.+| -+|++|
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~ 46 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDA---LEIRLV 46 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSE---EEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe
Confidence 37899999999999999999999986 577777
No 145
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.72 E-value=7.3e-06 Score=59.41 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 3689999999999999999999999999999998753
No 146
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.68 E-value=2.1e-05 Score=58.58 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++.+|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~ 106 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 106 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC
Confidence 37899999999999999999999999999999998764
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=1.6e-05 Score=54.48 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCC-cceEEe
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRL 164 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpG-FkEVRL 164 (179)
++++|||.|||.++|+++|..+|.+|.. .+.+.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 4789999999999999999999999988 555555
No 148
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.66 E-value=8e-06 Score=55.60 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=33.8
Q ss_pred CeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 133 ~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++|||.|||.++|+++|..+|.+|...++|+++..+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 38 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE 38 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC
Confidence 4799999999999999999999999999999986543
No 149
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.66 E-value=4.9e-05 Score=56.35 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=34.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCC-CCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRH-VSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~-~gg~~~~~ 179 (179)
++++|||.|||.++|+++|..+|++| .+|++| ...++ +|-.+|-|
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~---g~v~~~-~~~~~~~g~afV~f 143 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDA---LEIRLV-SQDGKSKGIAYIEF 143 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTC---SEEEEE-CSSSSCCSEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhc---CeEEEe-cCCCCCceEEEEEE
Confidence 48899999999999999999999984 688888 33333 33344443
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5.9e-05 Score=54.59 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.++.+|||.|||.++|+++|..+|++|....+|+++..+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 123 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 123 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC
Confidence 348899999999999999999999999999999999764
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=4.2e-05 Score=52.79 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=29.5
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceE
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV 162 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEV 162 (179)
.++|||.|||.++|+++|..+|.+|...++|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 6799999999999999999999999988887
No 152
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.64 E-value=1.9e-05 Score=63.75 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++.+|||.|||.++|+++|..+|.+|.-.++|+++..+.+.+|-.+|.|
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f 88 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF 88 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEE
Confidence 4889999999999999999999999999999999997766556556544
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.62 E-value=6.3e-05 Score=54.88 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=35.2
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 7899999999999999999999999999999998865
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.62 E-value=3.7e-05 Score=57.66 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=35.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+.++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 36899999999999999999999999999999999865
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.60 E-value=2.1e-05 Score=61.63 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=40.3
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+.|||.|||.++|+++|..+|.+|...++|+++..+.+.+|-.+|.|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f 150 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 150 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEe
Confidence 678999999999999999999999999999999976655444455543
No 156
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.60 E-value=1.6e-05 Score=53.41 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCC----C-------CcceEEeee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVS 166 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qF----p-------GFkEVRLVp 166 (179)
++++|||.|||.++|+++|..+|++| . -.++|++..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~ 51 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 51 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence 47899999999999999999999999 4 466777653
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.58 E-value=3.8e-05 Score=56.23 Aligned_cols=42 Identities=17% Similarity=0.410 Sum_probs=37.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV 172 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~ 172 (179)
++++|||.|||.++|+++|..+|.+|...++|+++..+.+++
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~ 135 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 135 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCE
Confidence 378999999999999999999999999999999998765443
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.58 E-value=5.8e-05 Score=55.46 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=35.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
..++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 47899999999999999999999999999999999874
No 159
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.57 E-value=2.6e-05 Score=60.14 Aligned_cols=37 Identities=8% Similarity=0.247 Sum_probs=33.8
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCC--CcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r 168 (179)
..+|||.|||.++|+++|..+|.+|. -.++|+++..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~ 93 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR 93 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC
Confidence 67999999999999999999999998 89999999664
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.70 E-value=1.1e-05 Score=57.76 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcce--------EEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~r 168 (179)
+++|||.|||.++|+++|..+|.+|...++ |+++..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~ 51 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR 51 (116)
Confidence 789999999999999999999999998888 8888653
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.55 E-value=0.00015 Score=55.05 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=37.6
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCC-CcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+++|||.|||.++|+++|..+|.+|. ..++|++++.. +|-.+|-|
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f 165 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQM 165 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEe
Confidence 89999999999999999999999997 67999998743 34555443
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.55 E-value=5.5e-05 Score=56.81 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=36.1
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.++++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 358999999999999999999999999999999999764
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.54 E-value=5.5e-05 Score=57.57 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP 161 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC
Confidence 37899999999999999999999999999999999864
No 164
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.52 E-value=3.5e-05 Score=56.95 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCC-CcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+..|||.|||.++|+++|..+|.+|. -.+.|+++..+ .+|-.+|.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F 74 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEF 74 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEE
Confidence 378999999999999999999999997 68888876443 345556544
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.50 E-value=5.5e-05 Score=57.56 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 64 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS 64 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence 7899999999999999999999999999999998654
No 166
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.50 E-value=7e-05 Score=56.41 Aligned_cols=48 Identities=4% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCCeEEecCCCCcccHHHHH----hhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~----~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|||.|||.++|+++|. .+|.+|.-..+|++.. ..+.+|-.||.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F 79 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVF 79 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEE
Confidence 38999999999999998765 7999999999998753 223355566554
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.48 E-value=0.00011 Score=59.30 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=37.7
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+++|||.|||.++|+++|..+|.+|...++|+++.. +|-.+|-|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f 65 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRL 65 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEE
Confidence 4789999999999999999999999999999999632 35555544
No 168
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.46 E-value=5.7e-05 Score=61.43 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCC--CcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r 168 (179)
..+|||.|||.++|+++|..+|.+|. -.++|+|+..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 106 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence 56899999999999999999999998 89999999764
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.45 E-value=7.7e-05 Score=54.02 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=35.0
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 7899999999999999999999999999999998765
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.43 E-value=9.6e-05 Score=58.45 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCC-CcceEEeeeccCCCCCCcccc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHVSMIFLL 178 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r~~~~gg~~~~ 178 (179)
+++|||.|||.++|+++|..+|.+|. ..++|++++.. +|-.+|.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~ 195 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQ 195 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEE
Confidence 89999999999999999999999996 67899998742 3445543
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.00027 Score=48.94 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEee
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLV 165 (179)
++++|||.|| ++|+++|..+|.+|...++|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 4889999997 89999999999999999999984
No 172
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.42 E-value=0.00011 Score=58.10 Aligned_cols=46 Identities=11% Similarity=0.343 Sum_probs=38.4
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC-CCccc
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV-SMIFL 177 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~-gg~~~ 177 (179)
+++|||.|||.++|+++|..+|.+|...++||++....+++ |-.||
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFV 155 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFV 155 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEE
Confidence 58999999999999999999999999999999987554433 33444
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.41 E-value=5.7e-05 Score=60.54 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=35.8
Q ss_pred CeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 133 ~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
..|||.|||.++|+++|..||++|...++|+++.+++ .|-.||-|
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~--rgfAFVeF 91 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN--QFQALLQY 91 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS--CEEEEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC--CCEEEEEE
Confidence 3467999999999999999999999999999976542 23355443
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.34 E-value=7.7e-05 Score=54.54 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=35.1
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeecc
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
++++|||.|||.++|+++|..+|++|....+|+++..+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 37899999999999999999999999999999998764
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.34 E-value=0.00025 Score=52.31 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=35.6
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.++++|||.|| ++|+++|..+|.+|...++|+++ +.+|-.||.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f 80 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTY 80 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEE
Confidence 35889999996 69999999999999999999996 2344455544
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.32 E-value=0.00015 Score=58.15 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=30.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcceEEe
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRL 164 (179)
++++|||.|||.++|+++|..+|.+|. .++|++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~ 53 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV 53 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE
Confidence 378999999999999999999999996 888887
No 177
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.28 E-value=3e-05 Score=53.90 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCCCCcce
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE 161 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE 161 (179)
++.+|||.|||.++|+++|..+|.+|....+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 5789999999999999999999999877666
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.24 E-value=0.00032 Score=56.26 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=37.1
Q ss_pred CCCeEEecCCCCc-ccHHHHHhhcCCCCCcceEEeeeccCCCC
Q 030341 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHV 172 (179)
Q Consensus 131 pn~iLFVqNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~~~~ 172 (179)
++++|||.|||.+ +|+++|..+|.+|....+|+++..+.+++
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~ 225 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL 225 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCc
Confidence 3789999999999 59999999999999999999988765543
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.98 E-value=0.00046 Score=55.72 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCCCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHV 172 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~ 172 (179)
+.+|||.|||.++|+++|..+|.+|...++|+++..+.+++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 136 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRA 136 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCc
Confidence 67999999999999999999999999999999998755443
No 180
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00025 Score=53.49 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCeEEe--cCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 131 pn~iLFV--qNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
++++||| .||+.++|+++|..+|.+|.-.++|++++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 4889999 66999999999999999999999998875
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.95 E-value=0.00035 Score=58.63 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=37.7
Q ss_pred CCeEEecCCCCcc---------cHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP~d~---------T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
+++|||.|||.++ |+++|..+|.+|.-.++|+++.. +|-.||.|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F 186 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKF 186 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEE
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEe
Confidence 8999999999998 79999999999999999999963 34555543
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.89 E-value=0.00046 Score=55.58 Aligned_cols=39 Identities=8% Similarity=0.271 Sum_probs=35.9
Q ss_pred CCCeEEecCCCCc-ccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|||.|||.+ +|+++|..+|.+|...+.|+++....
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 4789999999999 99999999999999999999987654
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=49.37 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=27.3
Q ss_pred CCCCCCCe-EEecCCCCcccHHH----HHhhcCCCC-CcceE
Q 030341 127 LPPDASST-LFVEGLPSDCSRRE----VAHIFRPFV-GYKEV 162 (179)
Q Consensus 127 lPpdpn~i-LFVqNLP~d~T~~e----L~~LF~qFp-GFkEV 162 (179)
.|| ++| |||.|||.++++++ |..||.+|. --.+|
T Consensus 5 ~~p--~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 5 SSG--CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp CCC--SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCC--cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 445 888 77999999999887 668999995 55555
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.48 E-value=0.00036 Score=51.62 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCCeEEecCCCCcccHHHHHhhcCCCCCcce
Q 030341 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKE 161 (179)
Q Consensus 130 dpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkE 161 (179)
.++++|||.|||.++|+++|..+|.+|-.-..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~ 42 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND 42 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 34889999999999999999999998754433
No 185
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.0023 Score=48.98 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCCCCCCCCeEEecCCCCc-ccHHHHHhhcCCCCCcceEEeeeccC
Q 030341 125 VPLPPDASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 125 ~~lPpdpn~iLFVqNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
..+|+ +.||+|.||+.+ +|+++|..+|++|...+.|.++....
T Consensus 13 ~~~~~--G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 13 LEEKI--GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp CSCCC--CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred ccccC--CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 35566 899999999999 99999999999998777777766554
No 186
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.13 E-value=0.0013 Score=48.40 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
+.-|||.||+..+|+++|..||.+|.-.++++++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 56799999999999999999999999999999976
No 187
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.97 E-value=0.0039 Score=54.78 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCCeEEecC--CCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 131 ASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 131 pn~iLFVqN--LP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
|+++|||.| |+.++|+++|..+|.+|.-.++|++.+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 489999999 578999999999999999999998875
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.79 E-value=0.022 Score=40.52 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCCeEEecCCC--Ccc---------cHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 131 ASSTLFVEGLP--SDC---------SRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 131 pn~iLFVqNLP--~d~---------T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
++++|+|.||. .++ ++++|..+|.+|.-.++|.+ ..+. .+|-.+|.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f 71 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSF 71 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEEC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEE
Confidence 48999999994 332 36899999999999999965 4332 345555544
No 189
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.06 E-value=0.022 Score=41.21 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCeEEecCCC-------CcccHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 132 n~iLFVqNLP-------~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
.+.|.|.-.. .++|+++|..+|.+|...++|+++. +.+|-.||.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF 61 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEF 61 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEE
Confidence 4456665554 4689999999999999999999982 3345555544
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=94.36 E-value=0.032 Score=40.26 Aligned_cols=37 Identities=3% Similarity=0.039 Sum_probs=31.3
Q ss_pred CCCeEEecCCCC-----cccHHHHHhhcCCCCCcceEEeeec
Q 030341 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~-----d~T~~eL~~LF~qFpGFkEVRLVp~ 167 (179)
++++|+|.||.. +-++++|..+|.+|.-..+|+++..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~ 48 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI 48 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecC
Confidence 589999999973 2378999999999999999999864
No 191
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.97 E-value=0.086 Score=39.88 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=31.6
Q ss_pred CCCCCCCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 127 lPpdpn~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
+-|...++|+| +.|.++...+|..||++|.| ..|+.|.
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~Wid 48 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID 48 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEE
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEc
Confidence 33456899999 99999999999999999964 4577665
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.08 Score=41.84 Aligned_cols=38 Identities=5% Similarity=0.136 Sum_probs=35.0
Q ss_pred CeEEecCC----CCcccHHHHHhhcCCCCCcceEEeeeccCC
Q 030341 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKESR 170 (179)
Q Consensus 133 ~iLFVqNL----P~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 170 (179)
..|||.|| |.++|+.+|..+|.+|.-.++|+++--+-+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T 44 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS 44 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 46999999 999999999999999999999999976655
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.02 E-value=0.24 Score=35.53 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCCeEEecCC--CCccc--------HHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGL--PSDCS--------RREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNL--P~d~T--------~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
|+++|.|.|+ |.+.. +++|...|++|.-.++|+++..+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD 52 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC
Confidence 4899999998 55553 468999999999999999875543
No 194
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.44 E-value=0.4 Score=36.24 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeee
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVS 166 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp 166 (179)
.++|+| +.|.++...+|..||++|. -..|+.|.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid 38 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID 38 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc
Confidence 689999 9999999999999999996 55677765
No 195
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.87 E-value=0.57 Score=35.47 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCeEEecCCCCcccHHHHHhhcCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRP 155 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~q 155 (179)
.+++.|+|||.++.++.|+..|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn 31 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFEN 31 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHC
T ss_pred ccEEEEECCCCCCChhHheEEEeC
Confidence 578999999999999999999984
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=85.32 E-value=0.37 Score=35.56 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCeEEecCCC--Ccc---cHHHHHhhcCCCCCcceEEeeeccC
Q 030341 131 ASSTLFVEGLP--SDC---SRREVAHIFRPFVGYKEVRLVSKES 169 (179)
Q Consensus 131 pn~iLFVqNLP--~d~---T~~eL~~LF~qFpGFkEVRLVp~r~ 169 (179)
++++|+|.|+- .++ .+++|...|.+|.-..+|+++..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 38999999994 232 4678999999999999999987654
No 197
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=82.55 E-value=1.3 Score=32.16 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=33.3
Q ss_pred eEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCC
Q 030341 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR 170 (179)
Q Consensus 134 iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 170 (179)
-|.|.+||++.|++++.+.....+-+.-.+.|+++..
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s 39 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTS 39 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCS
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccC
Confidence 4789999999999999999999998888899998765
No 198
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.07 E-value=2.4 Score=31.94 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=25.0
Q ss_pred CeEEecCCCCcc-c----HHHHHhhcCCC---------CCcceEEee
Q 030341 133 STLFVEGLPSDC-S----RREVAHIFRPF---------VGYKEVRLV 165 (179)
Q Consensus 133 ~iLFVqNLP~d~-T----~~eL~~LF~qF---------pGFkEVRLV 165 (179)
++|+|.||+.++ + +++++.||++| +-|+.||+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~ 52 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRIN 52 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEE
Confidence 489999999877 3 36778888864 577777764
No 199
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=72.43 E-value=2.7 Score=31.18 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCeEEecCCCCcccHHHHHhhcCCCCCcceEEeeeccCC
Q 030341 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR 170 (179)
Q Consensus 132 n~iLFVqNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 170 (179)
+-.|.|..||++.|++++.+.+.+.+...-.+.|+++..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s 47 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS 47 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC
Confidence 345899999999999999999998877555666766654
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=71.56 E-value=0.5 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.3
Q ss_pred ecCCCCcccHHHHHhhc------------CCCCCcceEEeeeccCCC
Q 030341 137 VEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRH 171 (179)
Q Consensus 137 VqNLP~d~T~~eL~~LF------------~qFpGFkEVRLVp~r~~~ 171 (179)
+.|||.++|+++|...| .+|.-.++|+++..+.++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~ 66 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDH 66 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSS
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCC
Confidence 56788888888888777 999999999998655433
No 201
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=68.29 E-value=11 Score=27.42 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=34.0
Q ss_pred CCCCCeEEecCCCCcc----------cHHHHHhhcCCCCCcceEEeeeccCCCCCCccccC
Q 030341 129 PDASSTLFVEGLPSDC----------SRREVAHIFRPFVGYKEVRLVSKESRHVSMIFLLF 179 (179)
Q Consensus 129 pdpn~iLFVqNLP~d~----------T~~eL~~LF~qFpGFkEVRLVp~r~~~~gg~~~~~ 179 (179)
|-++++|.|.|+=..- .+++|...|.+|...++|++.... .+|-.+|-|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f 62 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKC 62 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEEC
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEE
Confidence 3458899999985321 235789999999999999885432 255555544
No 202
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.08 E-value=15 Score=28.38 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCeEEecCCCCcccHHHHHhhcCCC-----CCcceEEeeec
Q 030341 131 ASSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSK 167 (179)
Q Consensus 131 pn~iLFVqNLP~d~T~~eL~~LF~qF-----pGFkEVRLVp~ 167 (179)
.-++|-|=|||++++...+..|..++ ..|+.|=|||-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 35799999999999999999999988 88999999984
No 203
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.45 E-value=34 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=26.4
Q ss_pred CCCCCCCeEEecCCCC----cc-c---HHHHHhhcCCCCCcceEEeeecc
Q 030341 127 LPPDASSTLFVEGLPS----DC-S---RREVAHIFRPFVGYKEVRLVSKE 168 (179)
Q Consensus 127 lPpdpn~iLFVqNLP~----d~-T---~~eL~~LF~qFpGFkEVRLVp~r 168 (179)
-||| -|++|+-+|. ++ . ..+|...|.+|.--..||++..+
T Consensus 4 GPpd--~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSG--GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CCSS--CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCC--CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 3564 4566666652 22 2 25788999999988888887643
Done!