BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030342
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 149 bits (377), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 12/113 (10%)
Query: 50 FKAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPS 109
F+A +YA PE GSSS+ + KI + R T TE+R+VNR PEKRQRVPS
Sbjct: 63 FQATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNR-------PPEKRQRVPS 110
Query: 110 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 162
AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct: 111 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 8/119 (6%)
Query: 43 LFEEIEAFKAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRES 95
L +E+ +F+AP+ ASP S+S C N A M + NKAT+ + +
Sbjct: 101 LLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNA 160
Query: 96 PHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 153
P + T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 161 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 8/119 (6%)
Query: 43 LFEEIEAFKAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRES 95
L +E+ +F+AP+ ASP S+S C N A M + NKAT+ + +
Sbjct: 101 LLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNA 160
Query: 96 PHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 153
P + T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 161 PSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLM 219
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 95/164 (57%), Gaps = 26/164 (15%)
Query: 12 YGSRFSVTVMARCSSSSGFLLQLLLLLLGITLFEEIEAFKAPSYASPECRIDLGSSSKCN 71
Y S F++ V RC G LL L +G++L + ++P DL +
Sbjct: 28 YASLFTL-VTVRC----GHCTNLLSLNIGVSLHQT---------SAPPIHQDLQPHRQ-- 71
Query: 72 NKISAMRTPTNKATEERVVNR------RESPHSTT---PEKRQRVPSAYNQFIKEEIQRI 122
+++ T + A+ R N RE+P PEKRQRVPSAYN+FIKEEIQRI
Sbjct: 72 -HTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRI 130
Query: 123 KANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDAS 166
KA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K D S
Sbjct: 131 KACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 70 CNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNP 127
C + AM+ P K ++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 128 DISHREAFSTAAKNWAHFPHIHFGLM 153
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 70 CNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNP 127
C + AM+ P K ++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NP
Sbjct: 128 CASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
Query: 128 DISHREAFSTAAKNWAHFPHIHFGLM 153
DISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 188 DISHREAFSAAAKNWAHFPHIHFGLM 213
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 97 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEA 156
H PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL
Sbjct: 106 HVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHE 165
Query: 157 NNQPKLDDASG 167
+++ KLD+A G
Sbjct: 166 SSK-KLDEAIG 175
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 69/98 (70%), Gaps = 8/98 (8%)
Query: 64 LGSSSKC--NNKISAMRTPTNKATEERVVNRRESPHSTT------PEKRQRVPSAYNQFI 115
+ S++ C NN +A P ++ + + SP + T PEKRQRVPSAYN+FI
Sbjct: 171 MASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFI 230
Query: 116 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 153
K+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 231 KDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 268
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 58/68 (85%), Gaps = 2/68 (2%)
Query: 93 RESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 152
+ P + PEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL
Sbjct: 130 KAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 189
Query: 153 MLEANNQP 160
+ +NQP
Sbjct: 190 V--PDNQP 195
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 57/68 (83%)
Query: 97 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEA 156
H+ PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 122 HARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGH 181
Query: 157 NNQPKLDD 164
KL D
Sbjct: 182 EGGKKLVD 189
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/54 (90%), Positives = 51/54 (94%)
Query: 102 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE 155
EKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM +
Sbjct: 151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMAD 204
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 48/52 (92%)
Query: 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 152
PEKRQRVPSAYN+FIKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 106 PEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 149
PEKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 132 PEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 41/45 (91%)
Query: 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 145
PEK+QR+PSAYN+F+++EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 112 PEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 103 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 149
++QR PSAYN F+KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 115 RKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 38/43 (88%)
Query: 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 143
PEK+ R+PSAYN+F++EEIQRIKA PDI HREAFS AAKNWA
Sbjct: 102 PEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q6P4F7|RHGBA_HUMAN Rho GTPase-activating protein 11A OS=Homo sapiens GN=ARHGAP11A PE=1
SV=2
Length = 1023
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 30 FLLQLLLLLLGITLF---EEIEAFKAPSYASP-----ECRIDLGS-SSKCNNKISAMRTP 80
F+L+ + +LGI +E F+ Y +P + R +G S NK RTP
Sbjct: 244 FILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPNRTP 303
Query: 81 TNKATEERVVNRRESPHSTTPEKRQRVP 108
+ EER+ ESP TP ++ +P
Sbjct: 304 SITPQEERIAQLSESPVILTPNAKRTLP 331
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 109 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPD 93
>sp|Q99VJ4|CLFA_STAAN Clumping factor A OS=Staphylococcus aureus (strain N315) GN=clfA
PE=1 SV=1
Length = 989
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 66 SSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKAN 125
++S N +S++ +P N E V +++ TP + P + K+ + +A
Sbjct: 149 TTSNDTNTVSSVNSPQNSTNAENVSTTQDTSTEATPSNNESAPQNTDASNKDVVS--QAV 206
Query: 126 NPDISHREAFS 136
NP AFS
Sbjct: 207 NPSTPRMRAFS 217
>sp|Q932C5|CLFA_STAAM Clumping factor A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=clfA PE=3 SV=1
Length = 935
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 66 SSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKAN 125
++S N +S++ +P N E V +++ TP + P + K+ + +A
Sbjct: 149 TTSNDTNTVSSVNSPQNSTNAENVSTTQDTSTEATPSNNESAPQNTDASNKDVVS--QAV 206
Query: 126 NPDISHREAFS 136
NP AFS
Sbjct: 207 NPSTPRMRAFS 217
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 109 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 109 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,013,266
Number of Sequences: 539616
Number of extensions: 2302976
Number of successful extensions: 6620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 6592
Number of HSP's gapped (non-prelim): 56
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)