Query 030342
Match_columns 179
No_of_seqs 99 out of 129
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 19:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz6_A HMG-box transcription f 98.6 6.7E-08 2.3E-12 66.5 5.3 51 97-147 1-51 (82)
2 2crj_A SWI/SNF-related matrix- 98.4 4.9E-07 1.7E-11 63.8 6.7 51 97-147 1-51 (92)
3 3nm9_A HMG-D, high mobility gr 98.4 3.5E-07 1.2E-11 61.8 5.7 46 102-147 2-47 (73)
4 2cs1_A PMS1 protein homolog 1; 98.4 4.9E-07 1.7E-11 63.8 6.0 50 98-147 2-51 (92)
5 1hme_A High mobility group pro 98.3 7.7E-07 2.6E-11 60.1 5.4 48 100-147 3-50 (77)
6 2e6o_A HMG box-containing prot 98.3 1.2E-06 4.1E-11 61.2 5.6 48 100-147 14-61 (87)
7 3f27_D Transcription factor SO 98.3 9.2E-07 3.2E-11 60.5 4.8 48 99-146 2-49 (83)
8 1wxl_A Single-strand recogniti 98.3 1.5E-06 5E-11 58.7 5.6 45 101-145 1-45 (73)
9 1hry_A Human SRY; DNA, DNA-bin 98.2 1.1E-06 3.7E-11 59.3 4.4 47 101-147 2-48 (76)
10 2co9_A Thymus high mobility gr 98.2 2.6E-06 8.8E-11 61.4 6.5 48 100-147 14-61 (102)
11 1ckt_A High mobility group 1 p 98.2 2.3E-06 7.7E-11 56.9 5.4 45 103-147 1-47 (71)
12 1j46_A SRY, sex-determining re 98.2 2.1E-06 7.3E-11 59.6 5.4 47 101-147 2-48 (85)
13 1i11_A Transcription factor SO 98.2 2.9E-06 9.9E-11 58.1 5.8 47 101-147 2-48 (81)
14 1wgf_A Upstream binding factor 98.2 1.8E-06 6.2E-11 60.8 4.9 48 100-147 17-64 (90)
15 4a3n_A Transcription factor SO 98.1 3.2E-06 1.1E-10 55.8 4.9 44 103-146 2-45 (71)
16 1gt0_D Transcription factor SO 98.1 3.4E-06 1.2E-10 57.5 5.1 46 102-147 1-46 (80)
17 2eqz_A High mobility group pro 98.1 3.2E-06 1.1E-10 58.8 5.0 48 100-147 12-61 (86)
18 1k99_A Upstream binding factor 98.1 4.7E-06 1.6E-10 60.0 5.4 48 100-147 7-54 (99)
19 4euw_A Transcription factor SO 98.1 5.2E-06 1.8E-10 60.4 5.4 48 100-147 26-73 (106)
20 3u2b_C Transcription factor SO 98.0 7.2E-06 2.5E-10 55.4 4.7 44 103-146 2-45 (79)
21 2lef_A LEF-1 HMG, protein (lym 98.0 1E-05 3.5E-10 56.1 5.2 45 103-147 2-46 (86)
22 2gzk_A Sex-determining region 98.0 1E-05 3.6E-10 61.0 5.5 48 100-147 85-132 (159)
23 1aab_A High mobility group pro 98.0 5.6E-06 1.9E-10 56.9 3.6 48 100-147 4-53 (83)
24 2d7l_A WD repeat and HMG-box D 97.9 1.9E-05 6.4E-10 55.8 6.0 47 101-147 3-50 (81)
25 2yrq_A High mobility group pro 97.9 1.3E-05 4.3E-10 61.6 5.5 48 100-147 98-145 (173)
26 2lhj_A High mobility group pro 97.9 6E-06 2.1E-10 58.7 3.0 48 100-147 19-68 (97)
27 1cg7_A Protein (NON histone pr 97.8 3.5E-06 1.2E-10 59.6 0.7 47 100-146 17-63 (93)
28 3tq6_A Transcription factor A, 97.8 1.2E-05 4.1E-10 64.8 3.7 50 98-147 4-53 (214)
29 2yrq_A High mobility group pro 97.7 5.1E-05 1.7E-09 58.2 5.7 48 100-147 12-61 (173)
30 3tmm_A Transcription factor A, 97.6 6.1E-05 2.1E-09 61.6 4.6 48 100-147 38-85 (238)
31 1l8y_A Upstream binding factor 97.6 0.00011 3.9E-09 54.0 5.4 44 102-146 3-46 (91)
32 2gzk_A Sex-determining region 97.4 0.00021 7.1E-09 53.9 5.7 48 100-147 1-48 (159)
33 1v63_A Nucleolar transcription 97.4 0.00019 6.7E-09 51.9 5.2 48 98-147 3-50 (101)
34 3fgh_A Transcription factor A, 97.4 0.00011 3.7E-09 48.6 3.2 40 103-146 2-41 (67)
35 2yuk_A Myeloid/lymphoid or mix 96.9 0.00018 6.1E-09 52.6 0.8 44 101-146 20-63 (90)
36 1v64_A Nucleolar transcription 96.6 0.0013 4.4E-08 48.2 3.4 44 100-147 13-57 (108)
37 3tmm_A Transcription factor A, 96.4 0.00068 2.3E-08 55.4 0.7 43 101-147 144-186 (238)
38 3tq6_A Transcription factor A, 96.3 0.00082 2.8E-08 54.1 0.7 42 101-146 112-153 (214)
39 2cto_A Novel protein; high mob 96.1 0.0035 1.2E-07 45.6 3.1 48 97-146 4-54 (93)
40 3fgx_A Rbstp2171; structural g 37.6 27 0.00092 26.8 3.3 12 106-117 45-56 (114)
41 2e2z_A TIM15; protein import, 27.7 22 0.00074 26.8 1.3 16 18-33 35-50 (100)
42 1pdn_C Protein (PRD paired); p 21.4 76 0.0026 20.8 3.0 29 111-139 76-104 (128)
43 1t3u_A Conserved hypothetical 21.0 1.2E+02 0.004 21.2 4.0 33 112-144 32-64 (104)
44 2vqc_A Hypothetical 13.2 kDa p 21.0 41 0.0014 25.8 1.7 21 107-129 43-63 (118)
No 1
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.58 E-value=6.7e-08 Score=66.45 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=47.7
Q ss_pred CCCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 97 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 97 ~~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
|++++.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..++
T Consensus 1 g~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (82)
T 1wz6_A 1 GSSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDP 51 (82)
T ss_dssp CCSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence 577899999999999999999999999999999999999999999998653
No 2
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.43 E-value=4.9e-07 Score=63.79 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=47.2
Q ss_pred CCCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 97 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 97 ~~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
|+..|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..++
T Consensus 1 g~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2crj_A 1 GSSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 51 (92)
T ss_dssp CCCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCH
Confidence 456788999999999999999999999999999999999999999998654
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.43 E-value=3.5e-07 Score=61.81 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=42.9
Q ss_pred cccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 102 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 102 eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.+++|.+|||..|+++.-..|+++||++++.|+-+.++..|+..++
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999999999999999999998653
No 4
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4.9e-07 Score=63.78 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=46.0
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 98 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 98 ~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
+..+.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..++
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 44678899999999999999999999999999999999999999998654
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.33 E-value=7.7e-07 Score=60.15 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=44.5
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
-|.+++|.+|||..|+++.-..|+++||++++.|..+.++..|+..++
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 50 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 50 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 467889999999999999999999999999999999999999998654
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=61.20 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.++||..|+++.-+.|+++||++++.|.-+.++..|+..++
T Consensus 14 dp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (87)
T 2e6o_A 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKN 61 (87)
T ss_dssp CCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence 567888999999999999999999999999999999999999998543
No 7
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.27 E-value=9.2e-07 Score=60.52 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=41.2
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 99 TTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 99 ~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
+.+.+.+|.++||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 2 ~~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 2 SFTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 346788999999999999999999999999999999999999998754
No 8
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.26 E-value=1.5e-06 Score=58.70 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=42.4
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 145 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~ 145 (179)
|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999999975
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.24 E-value=1.1e-06 Score=59.30 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=43.0
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
|.+++|-+|||..|+++.-+.|+++||++++.|.-+.++..|+..++
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 48 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCH
Confidence 56788999999999999999999999999999999999999998643
No 10
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=2.6e-06 Score=61.37 Aligned_cols=48 Identities=27% Similarity=0.469 Sum_probs=44.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||++++.|+-+.++..|+..++
T Consensus 14 dp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~ 61 (102)
T 2co9_A 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGE 61 (102)
T ss_dssp CCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCH
Confidence 567788999999999999999999999999999999999999998653
No 11
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.21 E-value=2.3e-06 Score=56.89 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=41.3
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCCC
Q 030342 103 KRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFPH 147 (179)
Q Consensus 103 K~~R~PSAYN~FMKeEIqRIKa~nP~isH--KEAFs~AAkNWa~~P~ 147 (179)
|++|.+|||..|+++.-+.|+++||+++. .|.-+.++..|+..++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~ 47 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 47 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCH
Confidence 57899999999999999999999999976 9999999999997543
No 12
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.20 E-value=2.1e-06 Score=59.56 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=43.6
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..++
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
Confidence 56788999999999999999999999999999999999999998643
No 13
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.19 E-value=2.9e-06 Score=58.12 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=42.9
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
+.+++|.+|||..|+++.-+.|+++||++++.|.-+.++..|+..++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 48 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN 48 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCS
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCH
Confidence 35788999999999999999999999999999999999999998654
No 14
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.18 E-value=1.8e-06 Score=60.77 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..++
T Consensus 17 dp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~ 64 (90)
T 1wgf_A 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSE 64 (90)
T ss_dssp CCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 577888999999999999999999999999999999999999998653
No 15
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.13 E-value=3.2e-06 Score=55.84 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=39.2
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 103 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 103 K~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
|.+|.+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 56889999999999999999999999999999999999998754
No 16
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.12 E-value=3.4e-06 Score=57.47 Aligned_cols=46 Identities=13% Similarity=0.361 Sum_probs=42.4
Q ss_pred cccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 102 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 102 eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
++++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 46 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE 46 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 4678899999999999999999999999999999999999997553
No 17
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=3.2e-06 Score=58.76 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=43.2
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isH--KEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..++
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSG 61 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCH
Confidence 46778899999999999999999999999974 9999999999998543
No 18
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.09 E-value=4.7e-06 Score=60.00 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=44.6
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..++
T Consensus 7 dp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~ 54 (99)
T 1k99_A 7 HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPE 54 (99)
T ss_dssp SSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 577889999999999999999999999999999999999999998654
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.06 E-value=5.2e-06 Score=60.41 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.+.+++|.++||..|+++.-..|++++|++++.|.-+.++..|+.-++
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~ 73 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNE 73 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCH
Confidence 677889999999999999999999999999999999999999988653
No 20
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.99 E-value=7.2e-06 Score=55.41 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=41.1
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 103 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 103 K~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
+.+|.++||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 ~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 2 HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999754
No 21
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.97 E-value=1e-05 Score=56.09 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=41.7
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 103 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 103 K~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
+++|.+|||..|+++.-..|+++||++++.|.-+.++..|+..++
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 46 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSR 46 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 467899999999999999999999999999999999999997653
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.96 E-value=1e-05 Score=61.00 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=44.0
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+.+||+++..|..+.++..|+..++
T Consensus 85 dp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~ 132 (159)
T 2gzk_A 85 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 132 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCH
T ss_pred ccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCH
Confidence 466788999999999999999999999999999999999999997543
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.95 E-value=5.6e-06 Score=56.88 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=43.5
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isH--KEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..++
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~ 53 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSA 53 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCH
Confidence 57788999999999999999999999999975 9999999999998544
No 24
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.9e-05 Score=55.76 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=43.1
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDIS-HREAFSTAAKNWAHFPH 147 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~is-HKEAFs~AAkNWa~~P~ 147 (179)
+.+++|.+|||..|+++.-..|+.+||+++ ..|.-+.++..|+..+.
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~ 50 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLST 50 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCH
Confidence 456788999999999999999999999998 99999999999998654
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=61.63 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=44.2
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++....|+++||+++..|..+.++..|+..++
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~ 145 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 145 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCG
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 466788999999999999999999999999999999999999998654
No 26
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.89 E-value=6e-06 Score=58.65 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=44.5
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~is--HKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++.-..|+++||+++ +.|.-+.++..|+..++
T Consensus 19 dp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 19 DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp CCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 5678899999999999999999999999999 99999999999998554
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.82 E-value=3.5e-06 Score=59.61 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=43.9
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
.|.+++|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 17 dp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 56788999999999999999999999999999999999999999754
No 28
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.80 E-value=1.2e-05 Score=64.81 Aligned_cols=50 Identities=30% Similarity=0.497 Sum_probs=45.7
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 98 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 98 ~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
++.|.+++|.+|||..|+++....|+++||+++..|+.+.++..|+..+.
T Consensus 4 ~~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 53 (214)
T 3tq6_A 4 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 53 (214)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCH
Confidence 34578889999999999999999999999999999999999999998654
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=5.1e-05 Score=58.25 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=43.7
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~--isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..|+++....|++.||+ ++..|+.+.++..|+..+.
T Consensus 12 dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 56788899999999999999999999999 6899999999999987643
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.57 E-value=6.1e-05 Score=61.58 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=44.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.|.+++|.+|||..||++....|+++||+++..|+.+.++..|+..++
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 85 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 85 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH
Confidence 467889999999999999999999999999999999999999998553
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=97.56 E-value=0.00011 Score=53.99 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=41.1
Q ss_pred cccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 102 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 102 eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
.|++|.+|||+.|+++....+++.+|+ +..|.-+.++..|+.-.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls 46 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNME 46 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 578899999999999999999999999 99999999999999753
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.44 E-value=0.00021 Score=53.86 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=44.0
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
++.+.+|-++||-.|++++-.+|+..||+++..|+.+.++..|+..+.
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhH
Confidence 367888999999999999999999999999999999999999997653
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.42 E-value=0.00019 Score=51.89 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=38.6
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 98 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 98 ~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
++.+.+++|.+|||..|+++.+. ...+|+++..|+.+.++..|+..++
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 44567788899999999999954 3345568889999999999998654
No 34
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=48.60 Aligned_cols=40 Identities=35% Similarity=0.679 Sum_probs=36.4
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 103 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 103 K~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
+++|.+|||..|+++.-..++..|| .|..+.++..|+.-+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 5788999999999999999999887 599999999999865
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.95 E-value=0.00018 Score=52.58 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
|.+++|.||||-.|++++=.+||++||+++ +.|..+++.|+..+
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 456788999999999999999999999994 44555669998754
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.65 E-value=0.0013 Score=48.18 Aligned_cols=44 Identities=16% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCccc-CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 100 TPEKR-QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 100 p~eK~-~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
.+.++ +|.+|||..|+++.-..|+ +++..|..+.++..|+..++
T Consensus 13 d~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 13 FDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp TTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 35566 7889999999999999888 89999999999999998654
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.41 E-value=0.00068 Score=55.38 Aligned_cols=43 Identities=33% Similarity=0.606 Sum_probs=38.1
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 147 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P~ 147 (179)
+.+++|.+|||..|+++...+|+.+||+ |+.+.++..|+..++
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~ 186 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSD 186 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCT
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCH
Confidence 5578899999999999999999988876 999999999998643
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.31 E-value=0.00082 Score=54.09 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.8
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030342 101 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 146 (179)
Q Consensus 101 ~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~~P 146 (179)
|.+++|.+|||..|+++....|+.++|+ |+.+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 5677899999999999999999988886 99999999999864
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.0035 Score=45.64 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=41.1
Q ss_pred CCCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccCC
Q 030342 97 HSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA---AKNWAHFP 146 (179)
Q Consensus 97 ~~~p~eK~~R~PSAYN~FMKeEIqRIKa~nP~isHKEAFs~A---AkNWa~~P 146 (179)
++..+.+++|.+|||..|+++.-.+||.+ +++..|.=+.+ +..|+.-.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls 54 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLR 54 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC
Confidence 34456678899999999999999999998 88889988888 99998753
No 40
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=37.62 E-value=27 Score=26.82 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=9.7
Q ss_pred CCchhhhHHHHH
Q 030342 106 RVPSAYNQFIKE 117 (179)
Q Consensus 106 R~PSAYN~FMKe 117 (179)
..|..||+|+++
T Consensus 45 Pt~~~YnRyi~t 56 (114)
T 3fgx_A 45 PKVSDISRFTKE 56 (114)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 368899999974
No 41
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=27.67 E-value=22 Score=26.79 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.5
Q ss_pred eeeeeecCCcchhHHH
Q 030342 18 VTVMARCSSSSGFLLQ 33 (179)
Q Consensus 18 ~tVtVRCG~Cs~lLsv 33 (179)
-+|-|+|..|.+.-.+
T Consensus 35 GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 35 GTVLISCPHCKVRHLI 50 (100)
T ss_dssp SEEEEECTTTCCEEES
T ss_pred CEEEEEcCCCccceEe
Confidence 5899999999997553
No 42
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.43 E-value=76 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 030342 111 YNQFIKEEIQRIKANNPDISHREAFSTAA 139 (179)
Q Consensus 111 YN~FMKeEIqRIKa~nP~isHKEAFs~AA 139 (179)
++.-.+++|.++..++|+++.+|......
T Consensus 76 l~~~~~~~i~~~~~~~~~~s~~~i~~~l~ 104 (128)
T 1pdn_C 76 ATPEIENRIEEYKRSSPGMFSWEIREKLI 104 (128)
T ss_dssp SCSTHHHHHHHTTTTCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 33334577777888899999988765543
No 43
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=21.00 E-value=1.2e+02 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhcc
Q 030342 112 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAH 144 (179)
Q Consensus 112 N~FMKeEIqRIKa~nP~isHKEAFs~AAkNWa~ 144 (179)
-.|+-+.|+.|+..+|.++.......||-|-++
T Consensus 32 A~~vd~~~~~i~~~~~~~~~~r~~vmaALnlad 64 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGADRVAVMAALNITH 64 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 367889999999999999999999999998775
No 44
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=20.99 E-value=41 Score=25.80 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=18.1
Q ss_pred CchhhhHHHHHHHHHHHhhCCCC
Q 030342 107 VPSAYNQFIKEEIQRIKANNPDI 129 (179)
Q Consensus 107 ~PSAYN~FMKeEIqRIKa~nP~i 129 (179)
+||||| ++.-++-|-+.+||-
T Consensus 43 ~~sayn--iqr~l~~ice~hpde 63 (118)
T 2vqc_A 43 VPSAYN--IQRALKAICERHPDE 63 (118)
T ss_dssp HHHHHH--HHHHHHHHHHHCTTT
T ss_pred cchHhH--HHHHHHHHHhcCCch
Confidence 799999 578888999999973
Done!