BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030343
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 252 bits (644), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 116/163 (71%), Positives = 139/163 (85%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
+LN VRQ F RSKI++YIR FLD L FLE+ETPMMN+I GGA A+PF+T+HN+L+M L
Sbjct: 167 ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNL 226
Query: 61 YMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELT 120
YMRIAPELY K LVVGG+DRVYEIG+QFRNEGIDLTHNPEFTTCEFYMA+ADY+DLME+T
Sbjct: 227 YMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEIT 286
Query: 121 EKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFI 163
EKM+SGM+K ITGSYK+ YH G + ++DFTPPFR +N +
Sbjct: 287 EKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMV 329
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 252 bits (643), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 116/163 (71%), Positives = 139/163 (85%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
+LN VRQ F RSKI++YIR FLD L FLE+ETPMMN+I GGA A+PF+T+HN+L+M L
Sbjct: 167 ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNL 226
Query: 61 YMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELT 120
YMRIAPELY K LVVGG+DRVYEIG+QFRNEGIDLTHNPEFTTCEFYMA+ADY+DLME+T
Sbjct: 227 YMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEIT 286
Query: 121 EKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFI 163
EKM+SGM+K ITGSYK+ YH G + ++DFTPPFR +N +
Sbjct: 287 EKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMV 329
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 116/168 (69%), Gaps = 7/168 (4%)
Query: 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYM 62
N E R FK RS+I+S IR+F+ N F+EVETPMM +I GGAAARPF+THHN L++ +Y+
Sbjct: 176 NDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYL 235
Query: 63 RIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEK 122
RIAPELYLK LVVGG +RV+EI + FRNEGI + HNPEFT E YMA+ADY DL+ELTE
Sbjct: 236 RIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTES 295
Query: 123 MLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWYK 170
+ + ++I G ++ Y + +DF PF L + K Y+
Sbjct: 296 LFRTLAQDILGKTEVTY-------GDVTLDFGKPFEKLTMREAIKKYR 336
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
++N E ++ F TRS I+ +RR+LD+ +LEVETPMM+ +AGGAAARPF+THHN L+M L
Sbjct: 165 IMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTL 224
Query: 61 YMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELT 120
YMRIA EL+LK L+VGGL++VYEIG+ FRNEGI HNPEFT E Y A+AD+ D+M+LT
Sbjct: 225 YMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLT 284
Query: 121 EKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWY 169
E +++ + E+ G+ KI+Y +D TP +R L+ + + K Y
Sbjct: 285 ENLIAHIATEVLGTTKIQYGEHL-------VDLTPEWRRLHMVDAIKEY 326
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 7/170 (4%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
+ N + RQ F RSKI++ IR+F+ F+EVETPMM +I GGA+ARPF+THHN L++ +
Sbjct: 174 IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDM 233
Query: 61 YMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELT 120
Y+RIAPELYLK LVVGG +RV+EI + FRNEGI + HNPEFT E YMA+ADY+DL+ELT
Sbjct: 234 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELT 293
Query: 121 EKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWYK 170
E + + +E+ G+ K+ Y DF PF L + K Y+
Sbjct: 294 ESLFRTLAQEVLGTTKVTYGEHVF-------DFGKPFEKLTMREAIKKYR 336
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
++ E R F+ R+K ++ IR+F+ + DF+EVETPM++ I GGAAA+PFVTHHN L+M++
Sbjct: 195 IVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEM 254
Query: 61 YMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELT 120
++RIAPELYLK L+VGG +RV+EI + FRNEG+ HNPEFT EFY A+ DY LM+ T
Sbjct: 255 FLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFT 314
Query: 121 EKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWY 169
E+++ + G+ I+Y E+D PF L + + Y
Sbjct: 315 ERLIRQAAVDALGTATIQYQGR-------ELDLAQPFHRLTITQAIQKY 356
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 75.5 bits (184), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 72/128 (56%)
Query: 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIA 65
+++ + R +++ I FLD F++VETP + A V + ++ + + +
Sbjct: 140 MQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQS 199
Query: 66 PELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLS 125
P+L+ + L+V GLDR ++I + FR+E + P+FT + M+F + D++EL E++++
Sbjct: 200 PQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMA 259
Query: 126 GMIKEITG 133
+ +E G
Sbjct: 260 HVFREALG 267
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLY-MR 63
E+ Q KTR+KI S +RRF+D+ FL++ETPM+ A AR ++ K Y +
Sbjct: 133 EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTK-ATPEGARDYLVPSRVHKGKFYALP 191
Query: 64 IAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKM 123
+P+L+ + L++ G DR Y+I K FR+E + PEFT + +F + E+ E +
Sbjct: 192 QSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEAL 251
Query: 124 LSGMIKEITG 133
+ + E+ G
Sbjct: 252 VRHLWLEVKG 261
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLY-MR 63
E+ Q KTR+KI S +RRF+D+ FL++ETPM+ A AR ++ K Y +
Sbjct: 133 EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTK-ATPEGARDYLVPSRVHKGKFYALP 191
Query: 64 IAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKM 123
+P+L+ + L++ G DR Y+I K FR+E + PEFT + +F + E+ E +
Sbjct: 192 QSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEAL 251
Query: 124 LSGMIKEITG 133
+ + E+ G
Sbjct: 252 VRHLWLEVKG 261
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 13 RSKIVSYIRRFLDNLDFLEVETPMMNM-----IAGGAAARPFVTHHNDLNMKLYMRIAPE 67
R+ I++ IRRF + LEVETP M+ I FV + M L++ +PE
Sbjct: 39 RAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPE 98
Query: 68 LYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127
++K L+V G V+++ + FRNE + HNPEFT E+Y D LM + +L +
Sbjct: 99 YHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 158
Query: 128 IKEITGSYKIKYHASG---LDKDPIEIDFT 154
+ + + + Y + L+ DP+ D T
Sbjct: 159 L-DCPAAESLSYQQAFLRYLEIDPLSADKT 187
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 13 RSKIVSYIRRFLDNLDFLEVETPMMNM-IAGGAAARPFVTH----HNDLNMKLYMRIAPE 67
R+ I++ IRRF + LEVETP M+ PF T + M L++ +PE
Sbjct: 22 RAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPE 81
Query: 68 LYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127
++K L+V G V+++ + FRNE + HNPEFT E+Y D LM + +L +
Sbjct: 82 YHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 141
Query: 128 IKEITGSYKIKYHASG---LDKDPIEIDFT 154
+ + + + Y + L+ DP+ D T
Sbjct: 142 L-DCPAAESLSYQQAFLRYLEIDPLSADKT 170
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 8/130 (6%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETP--MMNMIAGGAAARPFVTHHNDLNMKLYM 62
E++ + K +S + R L F+E+ TP + + GGA P + + ++
Sbjct: 129 EMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFL 184
Query: 63 RIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLT-HNPEFTTCEFYMAFADYNDLMELTE 121
+P+LY KEL+ G ++RV+E+ +R E D H EF + + MAFADYND+M+L E
Sbjct: 185 AQSPQLY-KELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLE 243
Query: 122 KMLSGMIKEI 131
K+L ++K I
Sbjct: 244 KILHNIVKTI 253
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 13 RSKIVSYIRRFLDNLDFLEVETPMMNM-IAGGAAARPFVT------HHNDLNMKLYMRIA 65
R+ I++ IRRF + LEVETP M+ PF T H +N LY+ +
Sbjct: 20 RAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGIN--LYLMTS 77
Query: 66 PELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLS 125
PE ++K L+ G V+++ + FRNE + HNPEFT E+Y D LM + +L
Sbjct: 78 PEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQ 137
Query: 126 GMIKEITGSYKIKYHAS---GLDKDPIEIDFT 154
++ + + + Y + L+ DP+ D T
Sbjct: 138 QVL-DCQPAESLSYQQAFQRHLEIDPLSADKT 168
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 10 FKTRSKIVSYIRRFLDNL-DFLEVETPMM-NMIAGGAAARPFVTHHNDLNMKLYMRIAPE 67
+ RS++V +R +L NL F+++ETP + GGA + F+ + + +P+
Sbjct: 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQ 205
Query: 68 LYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127
+ + L+VGGLDR +++ + +R+EG PEFT + M+F D + L E +L
Sbjct: 206 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQ-- 263
Query: 128 IKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWYKIYHP 174
++ DKDP+ + PF ++ F Y P
Sbjct: 264 ------------YSWPNDKDPVVV----PFPTMTFAEVLATYGTDKP 294
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRI 64
+ R K ++ +V RR+LD DF E+ TP ++ GA + + + Y+
Sbjct: 120 KARAPLKVQAALVRGFRRYLDRQDFTEIFTP--KVVRAGAEGGSGLFGVDYFEKRAYLAQ 177
Query: 65 APELYLKELVVGGLDRVYEIGKQFRNEGIDLT-HNPEFTTCEFYMAF-ADYNDLMELTEK 122
+P+LY K+++VG +RVYE+ +R E + H E+ + + M F AD DLM L E
Sbjct: 178 SPQLY-KQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEA 236
Query: 123 MLSGMIKE 130
+L+ M++E
Sbjct: 237 LLAEMLEE 244
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA--GGAAARPFVTHHNDLNMKLYM 62
EV IFK RS + +R F F+E+ TP + A GG P D ++
Sbjct: 132 EVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDA----FL 187
Query: 63 RIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLT-HNPEFTTCEFYMAF-ADYNDLMELT 120
+P+LY + ++ GLDRVYEI FR E + T H E + + MAF D ++M
Sbjct: 188 AQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFL 247
Query: 121 EKMLSGMIKEITGSYKIKYHASGLD 145
E++++ I +Y +++A LD
Sbjct: 248 ERLVAHAI-----NYVREHNAKELD 267
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA--GGAAARPFVTHHNDLNMKLYM 62
EV IFK RS + +R F F+E+ TP + A GG P D ++
Sbjct: 132 EVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDA----FL 187
Query: 63 RIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLT-HNPEFTTCEFYMAF-ADYNDLMELT 120
+P+LY + ++ GLDRVYEI FR E + T H E + + MAF D ++M
Sbjct: 188 AESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFL 247
Query: 121 EKMLSGMIKEITGSYKIKYHASGLD 145
E++++ I +Y +++A LD
Sbjct: 248 ERLVAHAI-----NYVREHNAKELD 267
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETP-MMNMIAGGAAARPFVTHHNDLNMK 59
+ V + IF+ ++ + R +L F EV TP ++ + G ++ VT+ K
Sbjct: 169 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTY---FKGK 225
Query: 60 LYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADY 113
Y+ +P+ ++L+V +RVYEIG FR E + H EFT + MAF ++
Sbjct: 226 AYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 280
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETP-MMNMIAGGAAARPFVTHHNDLNMK 59
+ V + IF+ ++ + R +L F EV TP ++ + G ++ VT+ K
Sbjct: 172 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTY---FKGK 228
Query: 60 LYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADY 113
Y+ +P+ ++L+V +RVYEIG FR E + H EFT + MAF ++
Sbjct: 229 AYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 283
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 9 IFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPEL 68
IF+ +S R FL + F+E+ TP + + + F + D K Y+ +P+L
Sbjct: 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFD--RKAYLAQSPQL 300
Query: 69 YLKELVVGGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFAD-YNDLMELTEKMLSG 126
Y + ++G +V+E+G FR E + H EF + M + Y++ +++ EK+ +
Sbjct: 301 YKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTF 360
Query: 127 MIKEITGSY 135
+ EI +
Sbjct: 361 IFDEIPKRF 369
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 7 RQIFKT---RSKIVSYIRRFLDNLDFLEVETPMMNMIA-------GGAAARPFVTHHNDL 56
R I+K ++KI+ Y+ +F + F + M++ I G RP +
Sbjct: 9 RDIYKAIDIQTKILDYMTKFFTDRGFKWLLPIMLSPITDPLWPDPAGEGIRPAEVDVYGV 68
Query: 57 NMKLYMRIAPELYLKELVVG-GLDRVYEIGKQFRNEGI---DLTHNPEFTTCEFYMAFAD 112
M+L + + K+L + GL++++ + R E D H+ EFT +F + A
Sbjct: 69 RMRLTHSM---ILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEGAK 125
Query: 113 YNDLMELTEKMLSGMIK---EITG 133
D+M L E+++ G+ + E TG
Sbjct: 126 MKDVMRLIEELIYGLFRKAEEWTG 149
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL 60
+++ E+ ++KI+ Y+ F F + +++ I P +++
Sbjct: 6 IISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEI 65
Query: 61 Y---MRIAPELYL-KELVVG-GLDRVYEIGKQFRNEGI---DLTHNPEFTTCEFYMAFAD 112
Y MR+ + L K+L + GL +++ + R E D H EFT +F + A
Sbjct: 66 YGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK 125
Query: 113 YNDLMELTEKMLSGMIK---EITG 133
D+M L E+++ G+ + E TG
Sbjct: 126 MEDIMRLIERLVYGLFRKAEEWTG 149
>pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 98 NPEFTTCEFYMAFAD-YNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTP 155
NPE A D D+ME + M+ G E+TG G + ++D+TP
Sbjct: 70 NPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTP 128
>pdb|2W57|A Chain A, Crystal Structure Of The Vibrio Cholerae Ferric Uptake
Regulator (Fur) Reveals Structural Rearrangement Of The
Dna-Binding Domains
pdb|2W57|B Chain B, Crystal Structure Of The Vibrio Cholerae Ferric Uptake
Regulator (Fur) Reveals Structural Rearrangement Of The
Dna-Binding Domains
Length = 150
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 65 APELYLKELVVG---GLDRVYEIGKQFRNEGIDLTHNPEFTTCEF---------YMAFAD 112
A ELY K + +G GL VY + QF + GI H+ E F ++ D
Sbjct: 36 AEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELSTQHHHDHLVCLD 95
Query: 113 YNDLMELTEKMLSGMIKEITGSYKIK 138
+++E ++ ++ KEI Y ++
Sbjct: 96 CGEVIEFSDDVIEQRQKEIAAKYNVQ 121
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYM---------RI 64
K+ I RF + FLE+++P++ I R + + +L+ +++ +
Sbjct: 81 GKLEREITRFFVDRGFLEIKSPIL--IPLEYIERXGIDNDTELSKQIFRVDKNFCLRPXL 138
Query: 65 APELY--LKELVVGGLD--RVYEIGKQFRNEGIDLTHNPEFTTCEF 106
AP LY L++L D +++EIG +R E H EFT F
Sbjct: 139 APNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNF 184
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 56 LNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADY 113
LN +R + +L+ GLD +G +R + ID H P F E F+ +
Sbjct: 110 LNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKH 167
>pdb|2H63|A Chain A, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|B Chain B, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|C Chain C, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|D Chain D, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
Length = 292
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGG------AAARPFVTH--HND 55
VEV I S YIR+FL+ + VE PM +A A + V H H +
Sbjct: 64 VEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQKGKVLHEEHVE 123
Query: 56 LNMKLYMRIAPELYLKELVVGGL 78
L M+ + + E+ K+L+ G L
Sbjct: 124 LLMEEFAFLKKEVVGKDLLKGSL 146
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 85 GKQFRNEGIDLTHNPEFTTCEFYMA-----FADYNDLMELTEKMLSGMIKEITGSYKIKY 139
GK +R + D TH+ +FT E + +D +EL K L G +EI +++
Sbjct: 139 GKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREI----RLRP 194
Query: 140 HASGLDKDPIEID---FTPPFRSLNFIYSCKWYKIYHPG 175
+ +E+D F + N W +I G
Sbjct: 195 SYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAG 233
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 14 SKIVSYIRRFLDNLDFLEVETPMM-------NMIAGGAAARPFVTHHNDLNMKLYMRIAP 66
K+ I RF + FLE+++P++ M D N L +AP
Sbjct: 81 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAP 140
Query: 67 ELY--LKELVVGGLD--RVYEIGKQFRNEGIDLTHNPEFTTCEF 106
LY L++L D +++EIG +R E H EFT F
Sbjct: 141 NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNF 184
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 14 SKIVSYIRRFLDNLDFLEVETPMM-------NMIAGGAAARPFVTHHNDLNMKLYMRIAP 66
K+ I RF + FLE+++P++ M D N L +AP
Sbjct: 81 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAP 140
Query: 67 ELY--LKELVVGGLD--RVYEIGKQFRNEGIDLTHNPEFTTCEF 106
LY L++L D +++EIG +R E H EFT F
Sbjct: 141 NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNF 184
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 51 THHNDLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF 110
TH + + R+A + + +DRV FRNE +D TH EF E +
Sbjct: 326 THTTSASARALYRLAQKKPFTPVKYFSIDRV------FRNETLDATHLAEFHQIEGVV-- 377
Query: 111 ADYNDLMELTEKMLSGMIKE 130
AD+ LT L G+++E
Sbjct: 378 ADHG----LTLGHLMGVLRE 393
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 14 SKIVSYIRRFLDNLDFLEVETPMM-------NMIAGGAAARPFVTHHNDLNMKLYMRIAP 66
K+ I RF + FLE+++P++ M D N L + P
Sbjct: 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTP 139
Query: 67 ELY--LKELVVGGLD--RVYEIGKQFRNEGIDLTHNPEFTTCEFYM 108
LY L++L D +++EIG +R E H EFT F+
Sbjct: 140 NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQ 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,567,217
Number of Sequences: 62578
Number of extensions: 229983
Number of successful extensions: 609
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 36
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)