Query 030343
Match_columns 179
No_of_seqs 154 out of 1356
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00499 lysS_bact lysyl-tRNA 100.0 1.3E-44 2.7E-49 318.7 11.0 162 2-170 164-325 (496)
2 PRK00484 lysS lysyl-tRNA synth 100.0 6.1E-44 1.3E-48 314.1 10.2 163 2-171 164-326 (491)
3 PRK12445 lysyl-tRNA synthetase 100.0 6.8E-44 1.5E-48 314.2 10.2 163 2-171 176-338 (505)
4 PLN02502 lysyl-tRNA synthetase 100.0 2.2E-43 4.7E-48 313.0 11.6 163 2-171 221-383 (553)
5 PTZ00417 lysine-tRNA ligase; P 100.0 3.2E-43 6.9E-48 313.2 11.1 169 2-170 245-413 (585)
6 cd00775 LysRS_core Lys_tRNA sy 100.0 4.4E-43 9.5E-48 295.7 10.1 162 3-171 1-162 (329)
7 COG1190 LysU Lysyl-tRNA synthe 100.0 1.1E-42 2.5E-47 299.6 12.1 165 1-172 171-335 (502)
8 TIGR00459 aspS_bact aspartyl-t 100.0 6.5E-43 1.4E-47 311.1 10.2 159 1-177 129-288 (583)
9 COG0017 AsnS Aspartyl/asparagi 100.0 3.5E-43 7.5E-48 300.8 5.8 166 3-171 127-293 (435)
10 PTZ00385 lysyl-tRNA synthetase 100.0 1.1E-41 2.3E-46 305.0 11.6 171 2-172 225-396 (659)
11 PRK02983 lysS lysyl-tRNA synth 100.0 1.1E-41 2.4E-46 321.1 11.8 168 1-170 761-928 (1094)
12 PLN02903 aminoacyl-tRNA ligase 100.0 9.4E-42 2E-46 305.4 9.8 159 2-178 195-355 (652)
13 PF00152 tRNA-synt_2: tRNA syn 100.0 7.9E-42 1.7E-46 288.6 8.3 168 2-178 14-185 (335)
14 PRK00476 aspS aspartyl-tRNA sy 100.0 1.5E-41 3.2E-46 303.8 10.3 159 2-178 133-292 (588)
15 KOG1885 Lysyl-tRNA synthetase 100.0 3.7E-41 7.9E-46 286.3 11.9 174 1-174 216-390 (560)
16 PRK12820 bifunctional aspartyl 100.0 2.1E-41 4.6E-46 305.6 10.2 158 2-178 148-306 (706)
17 PLN02532 asparagine-tRNA synth 100.0 2E-41 4.3E-46 302.2 8.5 168 3-171 228-488 (633)
18 TIGR00458 aspS_arch aspartyl-t 100.0 2.3E-41 5E-46 293.8 8.5 163 2-170 125-288 (428)
19 PRK05159 aspC aspartyl-tRNA sy 100.0 5E-41 1.1E-45 292.5 7.5 165 1-171 127-293 (437)
20 PRK06462 asparagine synthetase 100.0 9.2E-41 2E-45 282.1 8.6 165 1-171 21-194 (335)
21 cd00776 AsxRS_core Asx tRNA sy 100.0 1.3E-40 2.7E-45 280.0 7.9 167 2-172 16-184 (322)
22 PLN02221 asparaginyl-tRNA synt 100.0 9.6E-41 2.1E-45 296.4 6.8 168 3-171 164-425 (572)
23 COG0173 AspS Aspartyl-tRNA syn 100.0 8.9E-40 1.9E-44 283.7 9.4 159 2-178 133-292 (585)
24 PTZ00425 asparagine-tRNA ligas 100.0 1.7E-39 3.7E-44 288.4 8.3 167 3-170 208-441 (586)
25 PLN02603 asparaginyl-tRNA synt 100.0 1.5E-39 3.2E-44 288.7 7.4 168 3-171 219-420 (565)
26 PLN02850 aspartate-tRNA ligase 100.0 3.6E-39 7.9E-44 285.5 9.8 167 2-170 217-385 (530)
27 TIGR00457 asnS asparaginyl-tRN 100.0 1.1E-39 2.4E-44 284.8 5.1 169 3-172 129-310 (453)
28 PRK03932 asnC asparaginyl-tRNA 100.0 1.3E-39 2.7E-44 284.5 5.2 168 3-171 126-306 (450)
29 TIGR00462 genX lysyl-tRNA synt 100.0 1.5E-38 3.2E-43 265.6 9.8 138 10-169 1-142 (304)
30 cd00669 Asp_Lys_Asn_RS_core As 100.0 1.5E-38 3.2E-43 261.4 8.1 154 10-170 1-154 (269)
31 PTZ00401 aspartyl-tRNA synthet 100.0 4.2E-38 9.1E-43 279.2 10.4 131 2-134 205-337 (550)
32 cd00777 AspRS_core Asp tRNA sy 100.0 1.3E-36 2.9E-41 251.1 8.1 143 10-170 1-144 (280)
33 KOG2411 Aspartyl-tRNA syntheta 100.0 2.6E-36 5.6E-41 258.3 7.7 158 2-178 170-330 (628)
34 KOG0554 Asparaginyl-tRNA synth 100.0 5.4E-36 1.2E-40 250.9 7.7 168 4-172 126-306 (446)
35 KOG0556 Aspartyl-tRNA syntheta 100.0 2.8E-36 6.1E-41 253.3 3.7 166 3-170 221-388 (533)
36 PRK09350 poxB regulator PoxA; 100.0 2.3E-34 4.9E-39 240.6 9.8 139 7-169 2-145 (306)
37 KOG0555 Asparaginyl-tRNA synth 100.0 1.7E-32 3.7E-37 230.0 4.2 160 4-172 237-400 (545)
38 COG2269 Truncated, possibly in 100.0 1.9E-30 4.1E-35 210.1 6.7 123 8-130 14-141 (322)
39 PRK09537 pylS pyrolysyl-tRNA s 99.4 1.8E-13 3.9E-18 118.2 5.8 125 3-127 191-333 (417)
40 cd00768 class_II_aaRS-like_cor 99.4 2.2E-13 4.8E-18 106.4 5.4 116 12-127 1-132 (211)
41 PRK00488 pheS phenylalanyl-tRN 99.3 2E-12 4.4E-17 109.0 6.2 116 13-129 110-238 (339)
42 PF01409 tRNA-synt_2d: tRNA sy 99.3 1.8E-12 4E-17 105.5 5.5 116 13-130 19-156 (247)
43 COG0016 PheS Phenylalanyl-tRNA 99.3 3.1E-12 6.8E-17 107.4 5.5 117 13-130 113-246 (335)
44 TIGR02367 PylS pyrrolysyl-tRNA 99.3 4E-12 8.6E-17 110.0 6.2 116 12-127 241-369 (453)
45 COG0124 HisS Histidyl-tRNA syn 99.3 6.7E-12 1.5E-16 109.1 7.2 125 2-126 10-153 (429)
46 PTZ00326 phenylalanyl-tRNA syn 99.2 1.9E-11 4E-16 107.6 5.8 112 13-127 231-408 (494)
47 PLN02853 Probable phenylalanyl 99.2 3.5E-11 7.6E-16 105.6 5.9 114 13-127 223-393 (492)
48 cd00773 HisRS-like_core Class 99.1 1.5E-10 3.2E-15 94.7 7.5 116 10-126 2-134 (261)
49 TIGR00442 hisS histidyl-tRNA s 99.1 3.3E-10 7.1E-15 97.8 7.9 122 4-126 8-149 (397)
50 PLN02530 histidine-tRNA ligase 99.1 3.7E-10 8E-15 100.2 7.5 125 3-127 77-217 (487)
51 CHL00201 syh histidine-tRNA sy 99.1 3.7E-10 7.9E-15 98.8 7.3 123 3-126 11-154 (430)
52 PRK12292 hisZ ATP phosphoribos 99.1 3.8E-10 8.2E-15 97.5 7.0 123 4-127 11-151 (391)
53 PLN02972 Histidyl-tRNA synthet 99.0 3.9E-10 8.4E-15 103.7 7.1 124 3-126 334-470 (763)
54 PRK00037 hisS histidyl-tRNA sy 99.0 7.9E-10 1.7E-14 95.8 8.1 122 4-126 12-150 (412)
55 PLN02788 phenylalanine-tRNA sy 99.0 5.5E-10 1.2E-14 96.3 5.9 114 14-130 71-213 (402)
56 PRK04172 pheS phenylalanyl-tRN 99.0 6.2E-10 1.3E-14 98.8 6.0 120 8-127 230-401 (489)
57 PF00587 tRNA-synt_2b: tRNA sy 99.0 6.1E-10 1.3E-14 85.7 4.8 115 12-128 1-135 (173)
58 cd00670 Gly_His_Pro_Ser_Thr_tR 99.0 1.1E-09 2.5E-14 87.5 6.0 117 10-127 2-146 (235)
59 cd00496 PheRS_alpha_core Pheny 98.9 1.3E-09 2.8E-14 87.2 6.0 114 15-128 5-132 (218)
60 PRK12420 histidyl-tRNA synthet 98.9 2.1E-09 4.5E-14 93.8 7.6 124 3-127 11-152 (423)
61 TIGR00443 hisZ_biosyn_reg ATP 98.9 2.3E-09 5E-14 90.1 7.3 120 6-126 4-139 (314)
62 PRK12421 ATP phosphoribosyltra 98.9 2.7E-09 5.8E-14 92.3 7.5 123 4-127 15-154 (392)
63 TIGR00468 pheS phenylalanyl-tR 98.9 2.1E-09 4.6E-14 89.7 6.1 117 12-129 73-203 (294)
64 cd00779 ProRS_core_prok Prolyl 98.9 4.4E-09 9.5E-14 86.0 7.6 116 8-124 29-162 (255)
65 PF13393 tRNA-synt_His: Histid 98.9 2.9E-09 6.2E-14 89.0 5.9 121 4-125 4-139 (311)
66 PRK12293 hisZ ATP phosphoribos 98.9 5.6E-09 1.2E-13 86.6 7.2 117 4-127 13-139 (281)
67 KOG2784 Phenylalanyl-tRNA synt 98.8 2.6E-09 5.6E-14 90.1 3.5 50 78-127 333-384 (483)
68 cd00772 ProRS_core Prolyl-tRNA 98.8 2.4E-08 5.1E-13 82.2 7.1 116 8-124 30-168 (264)
69 PRK09194 prolyl-tRNA synthetas 98.7 2.3E-08 4.9E-13 90.3 7.1 117 7-124 44-178 (565)
70 cd00774 GlyRS-like_core Glycyl 98.7 2.3E-08 4.9E-13 81.8 5.8 98 8-111 30-143 (254)
71 TIGR00409 proS_fam_II prolyl-t 98.7 4.9E-08 1.1E-12 88.2 7.4 122 8-130 45-187 (568)
72 cd00778 ProRS_core_arch_euk Pr 98.7 3.7E-08 8E-13 80.8 5.8 117 8-125 30-169 (261)
73 PRK00413 thrS threonyl-tRNA sy 98.7 3.7E-08 8E-13 90.0 6.0 119 6-125 266-409 (638)
74 KOG1936 Histidyl-tRNA syntheta 98.6 6.2E-08 1.3E-12 83.4 6.5 122 3-125 67-204 (518)
75 PRK12295 hisZ ATP phosphoribos 98.6 9.2E-08 2E-12 82.4 6.4 111 13-127 7-133 (373)
76 PRK14799 thrS threonyl-tRNA sy 98.6 1.3E-07 2.8E-12 85.0 7.3 116 7-125 165-299 (545)
77 cd00771 ThrRS_core Threonyl-tR 98.6 1.4E-07 3.1E-12 78.7 7.0 117 8-126 28-169 (298)
78 PRK12305 thrS threonyl-tRNA sy 98.6 1.7E-07 3.7E-12 84.7 7.9 103 7-110 203-324 (575)
79 TIGR00418 thrS threonyl-tRNA s 98.5 2.3E-07 5E-12 83.6 7.6 118 7-125 197-339 (563)
80 PRK12444 threonyl-tRNA synthet 98.5 2E-07 4.4E-12 85.3 7.2 113 9-124 273-404 (639)
81 PLN02908 threonyl-tRNA synthet 98.5 2.3E-07 4.9E-12 85.6 7.3 118 7-127 318-454 (686)
82 TIGR00408 proS_fam_I prolyl-tR 98.4 8.7E-07 1.9E-11 78.5 8.7 118 8-126 36-176 (472)
83 PRK12325 prolyl-tRNA synthetas 98.4 6.9E-07 1.5E-11 78.5 6.9 116 8-124 45-178 (439)
84 PRK08661 prolyl-tRNA synthetas 98.4 8.8E-07 1.9E-11 78.6 6.8 117 8-125 42-180 (477)
85 TIGR00414 serS seryl-tRNA synt 98.3 1.8E-06 3.9E-11 75.5 7.3 114 8-126 171-306 (418)
86 PRK12294 hisZ ATP phosphoribos 98.3 2.4E-06 5.2E-11 70.7 6.9 100 6-112 3-111 (272)
87 cd00770 SerRS_core Seryl-tRNA 98.2 2.2E-06 4.8E-11 71.7 5.8 113 8-125 50-184 (297)
88 TIGR00469 pheS_mito phenylalan 98.1 4.3E-06 9.4E-11 73.2 6.2 90 14-106 45-161 (460)
89 PRK05431 seryl-tRNA synthetase 98.1 7.4E-06 1.6E-10 71.8 6.6 114 8-126 168-304 (425)
90 PLN02837 threonine-tRNA ligase 98.1 1.1E-05 2.3E-10 73.8 7.2 117 8-126 245-380 (614)
91 PRK03991 threonyl-tRNA synthet 98.0 1.7E-05 3.6E-10 72.5 6.8 120 8-129 225-364 (613)
92 COG3705 HisZ ATP phosphoribosy 97.9 3.4E-05 7.3E-10 66.6 7.8 121 4-125 11-146 (390)
93 COG0442 ProS Prolyl-tRNA synth 97.9 3.4E-05 7.3E-10 68.7 6.6 117 8-125 45-179 (500)
94 TIGR00470 sepS O-phosphoseryl- 97.9 8.3E-06 1.8E-10 71.6 2.5 52 76-127 205-259 (533)
95 PLN02678 seryl-tRNA synthetase 97.7 5.8E-05 1.3E-09 66.5 5.6 114 8-124 172-309 (448)
96 PRK04173 glycyl-tRNA synthetas 97.7 8.8E-05 1.9E-09 65.6 6.0 50 78-128 186-238 (456)
97 PLN02320 seryl-tRNA synthetase 97.6 9.7E-05 2.1E-09 65.8 5.9 116 10-127 233-368 (502)
98 COG0441 ThrS Threonyl-tRNA syn 97.1 0.00061 1.3E-08 61.9 4.8 117 10-129 220-355 (589)
99 KOG2324 Prolyl-tRNA synthetase 97.1 0.0015 3.2E-08 55.8 6.4 111 8-119 50-179 (457)
100 COG0172 SerS Seryl-tRNA synthe 97.1 0.0017 3.8E-08 56.7 6.9 115 9-124 173-305 (429)
101 TIGR00415 serS_MJ seryl-tRNA s 97.1 0.0015 3.1E-08 58.3 6.5 117 9-127 222-387 (520)
102 PRK00960 seryl-tRNA synthetase 97.1 0.00065 1.4E-08 60.9 4.3 118 8-126 221-386 (517)
103 PRK09616 pheT phenylalanyl-tRN 97.1 0.00094 2E-08 60.4 5.4 114 13-126 361-488 (552)
104 COG0423 GRS1 Glycyl-tRNA synth 97.0 0.0014 3.1E-08 58.3 5.7 30 10-39 40-71 (558)
105 KOG1035 eIF-2alpha kinase GCN2 96.8 0.0025 5.5E-08 61.6 5.9 117 10-129 932-1057(1351)
106 TIGR00389 glyS_dimeric glycyl- 96.5 0.0035 7.6E-08 56.6 4.9 30 10-39 37-67 (551)
107 cd00769 PheRS_beta_core Phenyl 96.0 0.0075 1.6E-07 47.3 3.4 110 14-126 3-136 (198)
108 KOG2509 Seryl-tRNA synthetase 95.6 0.023 5.1E-07 49.6 5.2 117 8-126 183-327 (455)
109 PRK14894 glycyl-tRNA synthetas 95.5 0.028 6.2E-07 50.3 5.5 100 10-109 40-199 (539)
110 KOG1637 Threonyl-tRNA syntheta 94.0 0.084 1.8E-06 46.7 4.5 117 10-133 192-333 (560)
111 PF03590 AsnA: Aspartate-ammon 92.8 0.2 4.4E-06 40.5 4.7 120 14-133 7-144 (244)
112 TIGR00471 pheT_arch phenylalan 92.5 0.15 3.3E-06 46.2 4.0 114 13-126 364-490 (551)
113 PTZ00213 asparagine synthetase 91.5 1.2 2.6E-05 37.9 7.9 125 9-133 7-148 (348)
114 cd00645 AsnA Asparagine synthe 90.8 1.1 2.5E-05 37.5 7.0 108 26-133 18-137 (309)
115 TIGR00669 asnA aspartate--ammo 90.2 1.7 3.7E-05 36.8 7.6 124 10-133 5-146 (330)
116 PRK05425 asparagine synthetase 90.1 1.9 4E-05 36.6 7.8 122 12-133 10-148 (327)
117 PLN02734 glycyl-tRNA synthetas 89.2 0.15 3.2E-06 47.4 0.7 31 78-108 275-308 (684)
118 PLN02265 probable phenylalanyl 88.1 0.55 1.2E-05 43.1 3.7 114 13-126 399-527 (597)
119 COG2502 AsnA Asparagine synthe 87.8 2.2 4.9E-05 35.2 6.6 115 18-132 17-145 (330)
120 PRK07080 hypothetical protein; 85.0 0.35 7.6E-06 40.8 0.6 48 79-127 152-201 (317)
121 COG0072 PheT Phenylalanyl-tRNA 82.7 2.4 5.3E-05 39.4 5.2 113 12-128 352-488 (650)
122 KOG2298 Glycyl-tRNA synthetase 80.1 0.52 1.1E-05 42.0 -0.1 30 11-40 47-77 (599)
123 PRK00629 pheT phenylalanyl-tRN 77.7 2.8 6.1E-05 39.8 3.9 114 13-127 489-622 (791)
124 CHL00192 syfB phenylalanyl-tRN 76.5 3.1 6.7E-05 39.1 3.8 114 13-127 400-530 (704)
125 TIGR00472 pheT_bact phenylalan 72.4 3.5 7.6E-05 39.2 3.1 107 18-127 498-629 (798)
126 PRK04028 glutamyl-tRNA(Gln) am 70.2 1.4 3E-05 40.8 -0.1 22 154-175 258-279 (630)
127 PRK06253 O-phosphoseryl-tRNA s 70.2 2.9 6.2E-05 37.8 1.9 49 79-127 209-260 (529)
128 COG2024 Phenylalanyl-tRNA synt 69.8 1.4 3E-05 38.4 -0.1 50 78-127 207-259 (536)
129 KOG2783 Phenylalanyl-tRNA synt 61.9 13 0.00028 32.5 4.2 56 55-110 128-183 (436)
130 cd00673 AlaRS_core Alanyl-tRNA 61.7 28 0.00061 28.2 5.9 99 14-128 2-111 (232)
131 PF15513 DUF4651: Domain of un 58.6 11 0.00025 24.1 2.5 23 11-33 2-24 (62)
132 PRK01584 alanyl-tRNA synthetas 52.9 38 0.00083 31.3 5.9 98 14-127 4-111 (594)
133 PF01411 tRNA-synt_2c: tRNA sy 44.8 24 0.00052 32.2 3.4 98 16-129 2-115 (552)
134 KOG2851 Eukaryotic-type DNA pr 38.7 21 0.00045 30.9 1.8 61 57-117 54-123 (412)
135 PLN02900 alanyl-tRNA synthetas 35.7 1E+02 0.0023 30.2 6.2 98 14-127 14-131 (936)
136 PF08513 LisH: LisH; InterPro 33.5 23 0.0005 18.5 0.9 17 15-31 2-18 (27)
137 PRK13902 alaS alanyl-tRNA synt 30.8 1.4E+02 0.0031 29.1 6.3 98 14-127 62-176 (900)
138 PF12109 CXCR4_N: CXCR4 Chemok 29.4 25 0.00054 19.5 0.6 10 85-94 21-30 (33)
139 smart00667 LisH Lissencephaly 27.3 35 0.00076 17.7 1.0 21 13-33 3-23 (34)
140 TIGR03683 A-tRNA_syn_arch alan 27.0 1.2E+02 0.0026 29.6 5.0 95 14-124 59-170 (902)
141 PRK00252 alaS alanyl-tRNA synt 23.7 1.9E+02 0.0042 28.1 5.7 98 14-127 5-113 (865)
142 PF05372 Delta_lysin: Delta ly 22.7 1.3E+02 0.0027 15.5 2.4 19 114-132 3-21 (25)
143 PF09572 RE_XamI: XamI restric 21.5 1.3E+02 0.0029 24.6 3.6 21 16-36 125-145 (251)
No 1
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=1.3e-44 Score=318.66 Aligned_cols=162 Identities=58% Similarity=1.032 Sum_probs=149.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+..+++|++||.|++++|+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 164 ~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rV 243 (496)
T TIGR00499 164 VNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKV 243 (496)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCce
Confidence 58999999999999999999999999999999999999998888899998777899999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|+|||||||||+++++++|+|+++|+||+.++..+.+.+...+.. ..+++..||+|||
T Consensus 244 feIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~-------~~~~~~~pf~rit 316 (496)
T TIGR00499 244 YEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGE-------LEIDFKKPFKRIT 316 (496)
T ss_pred EEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCc-------eeccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999998776655431 2356778999999
Q ss_pred hhhccceee
Q 030343 162 FIYSCKWYK 170 (179)
Q Consensus 162 y~eAi~~l~ 170 (179)
|.||++.|+
T Consensus 317 ~~eai~~~~ 325 (496)
T TIGR00499 317 MVEAIKKYD 325 (496)
T ss_pred HHHHHHHHH
Confidence 999999554
No 2
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.1e-44 Score=314.12 Aligned_cols=163 Identities=61% Similarity=1.052 Sum_probs=150.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++||.+++++|+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 164 ~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rV 243 (491)
T PRK00484 164 VNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERV 243 (491)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcE
Confidence 58999999999999999999999999999999999998888888899988778999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||+|+++++|++||||+|+|+++++++|+|+++|++|+++++.+.+...+.+.. ..++++.||+|||
T Consensus 244 fei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~-------~~~~~~~pf~rit 316 (491)
T PRK00484 244 YEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQG-------TEIDFGPPFKRLT 316 (491)
T ss_pred EEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCC-------EeecCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999998766555432 1356678999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+.+
T Consensus 317 y~eai~~~~g 326 (491)
T PRK00484 317 MVDAIKEYTG 326 (491)
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 3
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.8e-44 Score=314.24 Aligned_cols=163 Identities=53% Similarity=0.927 Sum_probs=149.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+..++++++||.|++++|+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 176 ~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~~rV 255 (505)
T PRK12445 176 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERV 255 (505)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHHHHHHHhccCCcE
Confidence 68999999999999999999999999999999999999999888899988788999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|+|||||+|||+++++++|+|+++|+||++++..+.+.....+.. ..+++..||+|||
T Consensus 256 feIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~-------~~i~~~~pf~rit 328 (505)
T PRK12445 256 FEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGE-------HVFDFGKPFEKLT 328 (505)
T ss_pred EEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCc-------eeccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999988765544421 1246678999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+..
T Consensus 329 ~~eai~~~~~ 338 (505)
T PRK12445 329 MREAIKKYRP 338 (505)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 4
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2.2e-43 Score=313.05 Aligned_cols=163 Identities=75% Similarity=1.199 Sum_probs=151.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+..+++|++||.|+++||+||.++||+||+||+|++++||+++++|.+++++++.++||++|||+|+|+++++|++||
T Consensus 221 ~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rV 300 (553)
T PLN02502 221 ANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERV 300 (553)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCE
Confidence 68999999999999999999999999999999999999988888899998778999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|+|||||||||+++++++|+|+++|+||+.+++.+.+.+...+.. ..+++..||+|+|
T Consensus 301 feIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~-------~~i~~~~p~~rit 373 (553)
T PLN02502 301 YEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHG-------IEIDFTPPFRRIS 373 (553)
T ss_pred EEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCC-------ccccCCCCceecc
Confidence 999999999999999999999999999999999999999999999999999877665532 1356788999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+..
T Consensus 374 ~~e~l~~~~g 383 (553)
T PLN02502 374 MISLVEEATG 383 (553)
T ss_pred HHHHHHHHhC
Confidence 9999988743
No 5
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=3.2e-43 Score=313.20 Aligned_cols=169 Identities=56% Similarity=1.020 Sum_probs=152.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+..+++|++||.|+++||+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 245 ~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rV 324 (585)
T PTZ00417 245 INESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKV 324 (585)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCE
Confidence 58999999999999999999999999999999999999988888999998888999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+.+++|+|||||+|||++++|++|+|+++|+||++++..+.+.....+...+.+.....+++..||+|+|
T Consensus 325 feIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit 404 (585)
T PTZ00417 325 YEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVS 404 (585)
T ss_pred EEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceecc
Confidence 99999999999999999999999999999999999999999999999999887666664332222223356788999999
Q ss_pred hhhccceee
Q 030343 162 FIYSCKWYK 170 (179)
Q Consensus 162 y~eAi~~l~ 170 (179)
|.||++.+.
T Consensus 405 ~~ea~~~~~ 413 (585)
T PTZ00417 405 IVEELEKLT 413 (585)
T ss_pred HHHHHHHHh
Confidence 999998664
No 6
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=4.4e-43 Score=295.66 Aligned_cols=162 Identities=65% Similarity=1.102 Sum_probs=145.4
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhee
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRVY 82 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kvf 82 (179)
|+++++++++||.+++++|+||.++||+||+||+|+++++|+++++|.++.+++++++||++|||+|+|+++++|++|||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 68899999999999999999999999999999999988887778889876678999999999999999999989999999
Q ss_pred ecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccchh
Q 030343 83 EIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNF 162 (179)
Q Consensus 83 ~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rity 162 (179)
+||||||+|+++++|++||||+|||+++++++|+|+++|++|+++++.+.+...+.+... .++...||+||||
T Consensus 81 ~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~-------~~~~~~pf~rity 153 (329)
T cd00775 81 EIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGK-------ELDFTPPFKRVTM 153 (329)
T ss_pred EEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCc-------cccCCCCceEEEH
Confidence 999999999999999999999999999999999999999999999998887654443211 1344579999999
Q ss_pred hhccceeee
Q 030343 163 IYSCKWYKI 171 (179)
Q Consensus 163 ~eAi~~l~~ 171 (179)
.||++.+.+
T Consensus 154 ~eA~~~~~g 162 (329)
T cd00775 154 VDALKEKTG 162 (329)
T ss_pred HHHHHHHhC
Confidence 999998843
No 7
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-42 Score=299.65 Aligned_cols=165 Identities=59% Similarity=1.007 Sum_probs=156.8
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
|+|++.+..+..||+|+++||+||.++||+||+||+|.+.+||+.++||.|+++..+.++|||++|++|+++++.+|++|
T Consensus 171 i~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG~er 250 (502)
T COG1190 171 IVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFER 250 (502)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHHHHHHHhcCchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||++||||..+++|+|||||+|+|++++|++|+|+++|+|++.+++.+.++..+.+... .+++++||+||
T Consensus 251 VfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~-------~id~~~pf~ri 323 (502)
T COG1190 251 VFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQ-------EIDFSKPFKRI 323 (502)
T ss_pred heeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCE-------eEecCCCeeee
Confidence 99999999999999999999999999999999999999999999999999999888877533 47899999999
Q ss_pred hhhhccceeeee
Q 030343 161 NFIYSCKWYKIY 172 (179)
Q Consensus 161 ty~eAi~~l~~d 172 (179)
++.||++.+.+.
T Consensus 324 ~m~dal~e~~g~ 335 (502)
T COG1190 324 TMVDALKEYLGV 335 (502)
T ss_pred ehHHHHHHHhCc
Confidence 999999766553
No 8
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=6.5e-43 Score=311.10 Aligned_cols=159 Identities=32% Similarity=0.567 Sum_probs=140.6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceecccccccee-eeeechhhhhhhhhhccch
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL-YMRIAPELYLKELVVGGLD 79 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~-~L~~S~ql~~~~~~~~~~~ 79 (179)
+.|+.+++++++||.+++++|+||.++||+||+||+|+++.+++ +++|.+....++..+ +|+||||+|+|+++++|++
T Consensus 129 LR~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eG-ar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~e 207 (583)
T TIGR00459 129 LRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEG-ARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVD 207 (583)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCCCC-CcceeeeeecCCCceeecCCCHHHHHHHHHhcccC
Confidence 35789999999999999999999999999999999999754443 356765444444444 5999999999999999999
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
|||+||||||+|+.+++|.|||||||+|++|++++|+|+++|++++++++.+.+ .++..||+|
T Consensus 208 rvfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~-----------------~~~~~pf~r 270 (583)
T TIGR00459 208 RYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKG-----------------IDLKKPFPV 270 (583)
T ss_pred cEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceE
Confidence 999999999999999877799999999999999999999999999999998764 234689999
Q ss_pred chhhhccceeeeecCCCC
Q 030343 160 LNFIYSCKWYKIYHPGRS 177 (179)
Q Consensus 160 ity~eAi~~l~~d~pd~~ 177 (179)
+||.||++.||+|+||+|
T Consensus 271 ~ty~ea~~~yGsDkPDlR 288 (583)
T TIGR00459 271 MTYAEAMERYGSDKPDLR 288 (583)
T ss_pred EEHHHHHHHHCCCCCccc
Confidence 999999999999999997
No 9
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-43 Score=300.82 Aligned_cols=166 Identities=28% Similarity=0.466 Sum_probs=142.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhee
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRVY 82 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kvf 82 (179)
++..+++|++|+.+++++|+||.++||+||+||+|++++++++++.|.+ +||+.++||+||||||+|.++ .+++|||
T Consensus 127 ~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v--~yf~~~a~LtqS~QLyke~~~-~al~rVf 203 (435)
T COG0017 127 TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV--DYFDKEAYLTQSPQLYKEALA-AALERVF 203 (435)
T ss_pred ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE--eecCcceEEecCHHHHHHHHH-HHhCceE
Confidence 5788999999999999999999999999999999999987777899986 889999999999999999654 5599999
Q ss_pred ecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 83 EIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 83 ~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
+|||+||+|++++ |||+||||+|.||+|++++|+|+++|++++++++.+++.+..++.-.+.+...+....+.||+|||
T Consensus 204 ~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~rit 283 (435)
T COG0017 204 TIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRIT 283 (435)
T ss_pred EecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEE
Confidence 9999999999987 799999999999999999999999999999999999987654332222121122111157899999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|+||+++|++
T Consensus 284 Y~eAieiL~~ 293 (435)
T COG0017 284 YKEAIEILEE 293 (435)
T ss_pred HHHHHHHHHh
Confidence 9999999983
No 10
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-41 Score=305.01 Aligned_cols=171 Identities=39% Similarity=0.742 Sum_probs=148.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+.++++|++||.|+++||+||.++||+||+||+|+++++|+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 225 ~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erV 304 (659)
T PTZ00385 225 TNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERI 304 (659)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCE
Confidence 68999999999999999999999999999999999988888888999998878899999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|++||||+|||+++++++|+|+++|++|++++..+.+...+.+....+......+++..||+|+|
T Consensus 305 yeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit 384 (659)
T PTZ00385 305 YEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVS 384 (659)
T ss_pred EEEeceecCCCCCCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999987666653211000001246678999999
Q ss_pred -hhhccceeeee
Q 030343 162 -FIYSCKWYKIY 172 (179)
Q Consensus 162 -y~eAi~~l~~d 172 (179)
++++.+..|.|
T Consensus 385 ~~d~~~e~~G~d 396 (659)
T PTZ00385 385 VYDEIQRMSGVE 396 (659)
T ss_pred HHHHHHHHhCCC
Confidence 55555555544
No 11
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-41 Score=321.06 Aligned_cols=168 Identities=42% Similarity=0.704 Sum_probs=150.3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
++|+..++++++||.|+++||+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++|
T Consensus 761 ~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG~er 840 (1094)
T PRK02983 761 AVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGGVER 840 (1094)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcccCc
Confidence 36899999999999999999999999999999999999999998899999888999999999999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||||||||+++++|+|||||+|+|+++.|++|+|+++|++|+++++.+.+...+.+... .....+++++.||+||
T Consensus 841 VFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~--~~~~~~i~~~~pf~ri 918 (1094)
T PRK02983 841 VFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDG--DGVLEPVDISGPWPVV 918 (1094)
T ss_pred eEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCc--cccccccccCCCceEE
Confidence 99999999999999999999999999999999999999999999999999987655433211 1111235678999999
Q ss_pred hhhhccceee
Q 030343 161 NFIYSCKWYK 170 (179)
Q Consensus 161 ty~eAi~~l~ 170 (179)
||.||++.+.
T Consensus 919 t~~eai~~~~ 928 (1094)
T PRK02983 919 TVHDAVSEAL 928 (1094)
T ss_pred EHHHHHHHHh
Confidence 9999998653
No 12
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.4e-42 Score=305.39 Aligned_cols=159 Identities=27% Similarity=0.548 Sum_probs=138.9
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhcc-CCceeeeccccccccccccCCCceeccc-cccceeeeeechhhhhhhhhhccch
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDN-LDFLEVETPMMNMIAGGAAARPFVTHHN-DLNMKLYMRIAPELYLKELVVGGLD 79 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~-~gF~ev~tP~l~~~~~~~~~~~f~~~~~-~~~~~~~L~~S~ql~~~~~~~~~~~ 79 (179)
-++.+++++++||.+++++|+||.+ +||+||+||+|+.+.++++ ++|.+... ..+..+||+||||+|+|++|++|++
T Consensus 195 R~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGa-rdf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~ 273 (652)
T PLN02903 195 RRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGA-RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFD 273 (652)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCC-cccEEeeecCCCcccccCCCHHHHHHHHHhccCC
Confidence 4688999999999999999999997 9999999999997655443 45544322 2356678999999999999999999
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
|||+||||||+|+.+++|.+||||||||++|++++|+|+++|++++++++.+.+ .++..||+|
T Consensus 274 RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~-----------------~~~~~PF~r 336 (652)
T PLN02903 274 RYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKG-----------------VQLPNPFPR 336 (652)
T ss_pred cEEEEehhhccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceE
Confidence 999999999999999876799999999999999999999999999999987654 133469999
Q ss_pred chhhhccceeeeecCCCCC
Q 030343 160 LNFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 160 ity~eAi~~l~~d~pd~~~ 178 (179)
|||.||++.|++||||||.
T Consensus 337 ity~eA~~~ygsDKPDlRf 355 (652)
T PLN02903 337 LTYAEAMSKYGSDKPDLRY 355 (652)
T ss_pred EEHHHHHHHHcCCCCcccC
Confidence 9999999999999999984
No 13
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=7.9e-42 Score=288.57 Aligned_cols=168 Identities=36% Similarity=0.606 Sum_probs=141.9
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec---cccccceeeeeechhhhhhhhhhccc
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH---HNDLNMKLYMRIAPELYLKELVVGGL 78 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~---~~~~~~~~~L~~S~ql~~~~~~~~~~ 78 (179)
-++..++++++||.+++++|+||.++||+||+||+|+++++++++++|.+. ..++++++||++|||+|+|+++++|+
T Consensus 14 r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~ 93 (335)
T PF00152_consen 14 RTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL 93 (335)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccc
Confidence 367889999999999999999999999999999999998777778999985 34889999999999999999999999
Q ss_pred hheeecccccccccC-CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCc
Q 030343 79 DRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPF 157 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf 157 (179)
+|||+||||||+|++ +.+|++||||||||+++++++++|+++|++|+++++.+.+..+.. . +..++..||
T Consensus 94 ~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~-~--------~~~~~~~~f 164 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL-S--------LNIDLPKPF 164 (335)
T ss_dssp SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------TCEESSSS-
T ss_pred hhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc-c--------ccccccCCc
Confidence 999999999999998 679999999999999999999999999999999999987541110 0 024556789
Q ss_pred ccchhhhccceeeeecCCCCC
Q 030343 158 RSLNFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 158 ~rity~eAi~~l~~d~pd~~~ 178 (179)
++++|.||++.|++++|+++.
T Consensus 165 ~ri~~~ea~~~~~~~~~~~~~ 185 (335)
T PF00152_consen 165 PRITYEEAFEIYGGDKPDLRF 185 (335)
T ss_dssp EEEEHHHHHHHHHHTTTTTTT
T ss_pred eEeeehHHHHHhhcccccchh
Confidence 999999999999999988763
No 14
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-41 Score=303.78 Aligned_cols=159 Identities=31% Similarity=0.552 Sum_probs=140.9
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccc-cccceeeeeechhhhhhhhhhccchh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHN-DLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~-~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
-++.+++++++||.+++++|+||.++||+||+||+|+++.+++ +++|.+... +.+..++|+||||+|+|+++++|++|
T Consensus 133 R~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~r 211 (588)
T PRK00476 133 RRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDR 211 (588)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCc
Confidence 4788999999999999999999999999999999999765544 466776433 56677889999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||||||+|+++++|.+||||||||++|++++|+|+++|++++++++.+.+. ++..||+|+
T Consensus 212 vfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~-----------------~~~~pf~r~ 274 (588)
T PRK00476 212 YYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGV-----------------DLPTPFPRM 274 (588)
T ss_pred eEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCc-----------------cCCCCceEE
Confidence 999999999999887555599999999999999999999999999999987531 336799999
Q ss_pred hhhhccceeeeecCCCCC
Q 030343 161 NFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 161 ty~eAi~~l~~d~pd~~~ 178 (179)
||.||++.||+||||+|.
T Consensus 275 ty~ea~~~yg~dkPDlR~ 292 (588)
T PRK00476 275 TYAEAMRRYGSDKPDLRF 292 (588)
T ss_pred EHHHHHHHHCCCCCcccC
Confidence 999999999999999984
No 15
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-41 Score=286.34 Aligned_cols=174 Identities=70% Similarity=1.181 Sum_probs=164.4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
|+|+.++..|++|++|+..||.||.++||+||+||++...+||++++||.|+++.++.+.|||++|+||+++++++|++|
T Consensus 216 ilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldr 295 (560)
T KOG1885|consen 216 ILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDR 295 (560)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHHHHhccHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||+.||||..|.+|+||||.||+|++++|++|+|++.|+|++.++..+.+.+.+.+...+++...+++++++||+||
T Consensus 296 VYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri 375 (560)
T KOG1885|consen 296 VYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRI 375 (560)
T ss_pred HHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999888777677889999999999
Q ss_pred hhhhccce-eeeecC
Q 030343 161 NFIYSCKW-YKIYHP 174 (179)
Q Consensus 161 ty~eAi~~-l~~d~p 174 (179)
++-++++. ++.+=|
T Consensus 376 ~mi~~L~k~lgi~l~ 390 (560)
T KOG1885|consen 376 EMIEELEKELGIKLP 390 (560)
T ss_pred eHHHHHHHHhCCCCC
Confidence 99998753 454444
No 16
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=2.1e-41 Score=305.57 Aligned_cols=158 Identities=24% Similarity=0.458 Sum_probs=137.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceecccccccee-eeeechhhhhhhhhhccchh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKL-YMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~-~L~~S~ql~~~~~~~~~~~k 80 (179)
-++.+++++++||.+++++|+||.++||+||+||+|+.+.+++ +++|.+...+++..+ +|+||||+|+|+++++|++|
T Consensus 148 R~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eG-Ar~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~r 226 (706)
T PRK12820 148 RRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEG-ARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFER 226 (706)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCC-CcceEEeeecCCCcceecCCCHHHHHHHHHhccCCc
Confidence 4788999999999999999999999999999999999765444 355544444444444 59999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||||||+|+++++|.+||||||+|++|++++|+|+++|+|++++++ +.+ .++..||+||
T Consensus 227 vfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~-----------------~~~~~pf~r~ 288 (706)
T PRK12820 227 YFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEELTARMFA-IGG-----------------IALPRPFPRM 288 (706)
T ss_pred EEEEechhcCCCCCCCcCccccccceeeccCCHHHHHHHHHHHHHHHHH-hcC-----------------cCCCCCceEE
Confidence 9999999999999998779999999999999999999999999999886 111 2346799999
Q ss_pred hhhhccceeeeecCCCCC
Q 030343 161 NFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 161 ty~eAi~~l~~d~pd~~~ 178 (179)
||.||++.||+||||+|.
T Consensus 289 ty~eA~~~yG~DKPDlR~ 306 (706)
T PRK12820 289 PYAEAMDTTGSDRPDLRF 306 (706)
T ss_pred EHHHHHHHhCCCCCcccc
Confidence 999999999999999983
No 17
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=2e-41 Score=302.17 Aligned_cols=168 Identities=20% Similarity=0.352 Sum_probs=139.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCcee-------------------------------
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVT------------------------------- 51 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~------------------------------- 51 (179)
++.++++|++||.+..++|+||.++||+||+||+|+++.++++++.|++
T Consensus 228 t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (633)
T PLN02532 228 TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAI 307 (633)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceeccccccccccccccccccccccchhhhhhh
Confidence 5788999999999999999999999999999999998865554444322
Q ss_pred --------------------------------------------------------ccccccceeeeeechhhhhhhhhh
Q 030343 52 --------------------------------------------------------HHNDLNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 52 --------------------------------------------------------~~~~~~~~~~L~~S~ql~~~~~~~ 75 (179)
..+|||+++||++|||||+|++ +
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~-~ 386 (633)
T PLN02532 308 KEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY-A 386 (633)
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHH-H
Confidence 1258999999999999999965 5
Q ss_pred ccchheeecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhccee--EEecCCCCC---CCce
Q 030343 76 GGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYK--IKYHASGLD---KDPI 149 (179)
Q Consensus 76 ~~~~kvf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~--~~~~~~~~~---~~~~ 149 (179)
.+++|||+|||+||||++++ |||+||||+|+|++|++++|+|+++|++|+++++.+++++. +++.....+ .+.+
T Consensus 387 ~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~l 466 (633)
T PLN02532 387 CALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRL 466 (633)
T ss_pred HhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhh
Confidence 79999999999999999985 89999999999999999999999999999999999998754 333221111 1123
Q ss_pred EeccCCCcccchhhhccceeee
Q 030343 150 EIDFTPPFRSLNFIYSCKWYKI 171 (179)
Q Consensus 150 ~~~~~~pf~rity~eAi~~l~~ 171 (179)
+..++.||+||||.||+++|+.
T Consensus 467 e~~~~~pf~RIty~EAi~iL~~ 488 (633)
T PLN02532 467 EAIISSSLQRISYTEAVDLLKQ 488 (633)
T ss_pred hcccCCCceEEEHHHHHHHHHH
Confidence 3456789999999999998853
No 18
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=2.3e-41 Score=293.81 Aligned_cols=163 Identities=25% Similarity=0.430 Sum_probs=141.7
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++||.+++++|+||.++||+||+||+|++++++++++.|.+ ++++.++||++|||+|+|+++++|++||
T Consensus 125 r~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v--~~~~~~~yL~~Spql~~q~li~~g~~rV 202 (428)
T TIGR00458 125 RRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPI--TYFEREAFLGQSPQLYKQQLMAAGFERV 202 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeee--EecCCcEEECcCHHHHHHHHHhcccCcE
Confidence 47899999999999999999999999999999999998776666777875 6789999999999999999999999999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
|+||||||||++++ +|++||||+|||+++++++|+|+++|++|+++++.+.+.+...+...+.+ + ...+.||+||
T Consensus 203 f~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~---~-~~~~~pf~ri 278 (428)
T TIGR00458 203 YEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK---L-EKPEGKFVRL 278 (428)
T ss_pred EEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc---c-ccCCCCceEE
Confidence 99999999999996 89999999999999999999999999999999999987654433211100 0 0125799999
Q ss_pred hhhhccceee
Q 030343 161 NFIYSCKWYK 170 (179)
Q Consensus 161 ty~eAi~~l~ 170 (179)
||.||++++.
T Consensus 279 ty~eA~~~l~ 288 (428)
T TIGR00458 279 TYDEAIEMAN 288 (428)
T ss_pred EHHHHHHHHH
Confidence 9999998775
No 19
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-41 Score=292.52 Aligned_cols=165 Identities=27% Similarity=0.450 Sum_probs=140.8
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
+.|+.+++++++||.+++++|+||.++||+||+||+|++++++++++.|.+ +++|.++||++|||+|+|+++++|++|
T Consensus 127 lr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~--~~~~~~~~L~~Spql~~q~l~~~g~~r 204 (437)
T PRK05159 127 LRRPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI--DYFEKEAYLAQSPQLYKQMMVGAGFER 204 (437)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE--EecCCceEecCCHHHHHHHHHhcCCCc
Confidence 357889999999999999999999999999999999987655555666765 678999999999999999998899999
Q ss_pred eeecccccccccCCC-CCCCCcchhhHHHhhcc-hhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcc
Q 030343 81 VYEIGKQFRNEGIDL-THNPEFTTCEFYMAFAD-YNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFR 158 (179)
Q Consensus 81 vf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ 158 (179)
||+||||||+|++++ +|++||||+|||+++++ ++++|+++|++|+.+++.+.+.++..+...+.+ +. ..+.||+
T Consensus 205 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~---~~-~~~~~f~ 280 (437)
T PRK05159 205 VFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE---LP-VPETPIP 280 (437)
T ss_pred EEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC---CC-cCCCCce
Confidence 999999999999996 89999999999999998 999999999999999999877543222111111 11 2457999
Q ss_pred cchhhhccceeee
Q 030343 159 SLNFIYSCKWYKI 171 (179)
Q Consensus 159 rity~eAi~~l~~ 171 (179)
||||.||++++..
T Consensus 281 rit~~eA~~~l~~ 293 (437)
T PRK05159 281 RITYDEAIEILKS 293 (437)
T ss_pred EeEHHHHHHHHHH
Confidence 9999999998853
No 20
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=9.2e-41 Score=282.09 Aligned_cols=165 Identities=23% Similarity=0.374 Sum_probs=137.5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccccCCCcee-ccccccceeeeeechhhhhhhhh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAAARPFVT-HHNDLNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~~~~f~~-~~~~~~~~~~L~~S~ql~~~~~~ 74 (179)
|.|+..++++++||.|++++|+||.++||+||+||+|+++. +|+. .++.+ ..+++|+++||++|||+|+| ++
T Consensus 21 lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~yL~~Spql~k~-ll 98 (335)
T PRK06462 21 ISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEYYLADSMILHKQ-LA 98 (335)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCceeeccCHHHHHH-HH
Confidence 46899999999999999999999999999999999998763 2222 44532 34688999999999999977 56
Q ss_pred hccchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEe
Q 030343 75 VGGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEI 151 (179)
Q Consensus 75 ~~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (179)
++|++|||+||||||+|++++ +|++||||||||+++++++|+|+++|++|+++++.+.+.++..+...+.. + .
T Consensus 99 ~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i~~~~~~---~-~ 174 (335)
T PRK06462 99 LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFGRD---L-P 174 (335)
T ss_pred HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCc---c-c
Confidence 677999999999999999988 99999999999999999999999999999999999887654322111111 1 1
Q ss_pred ccCCCcccchhhhccceeee
Q 030343 152 DFTPPFRSLNFIYSCKWYKI 171 (179)
Q Consensus 152 ~~~~pf~rity~eAi~~l~~ 171 (179)
.++.||+||||.||++++..
T Consensus 175 ~~~~p~~rit~~eA~~~l~~ 194 (335)
T PRK06462 175 HLKRPFKRITHKEAVEILNE 194 (335)
T ss_pred cCCCCCeEEEHHHHHHHHHh
Confidence 34689999999999987653
No 21
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.3e-40 Score=280.03 Aligned_cols=167 Identities=28% Similarity=0.433 Sum_probs=143.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.++..++++++|+.|.+++|+||.++||+||+||+|+++++++++++|.+ +++++++||++|||+|+|+++++ ++||
T Consensus 16 r~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spql~lk~l~~~-~~~v 92 (322)
T cd00776 16 RTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQLYKEMLIAA-LERV 92 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHHHHHHHHHHh-hhhh
Confidence 47899999999999999999999999999999999999888888889986 78999999999999999988766 9999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
|+||||||+|++++ +|++||||+|||++++ +++|+|+++|++|+.+++.+.+.+...+...+ .......++..||+|
T Consensus 93 f~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r 171 (322)
T cd00776 93 YEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLNRELLKPLEPFPR 171 (322)
T ss_pred EEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccCcccccCCCCceE
Confidence 99999999999776 8999999999999999 99999999999999999998876543221100 001112345689999
Q ss_pred chhhhccceeeee
Q 030343 160 LNFIYSCKWYKIY 172 (179)
Q Consensus 160 ity~eAi~~l~~d 172 (179)
|||.||++++...
T Consensus 172 it~~eA~~~l~~~ 184 (322)
T cd00776 172 ITYDEAIELLREK 184 (322)
T ss_pred EEHHHHHHHHHHc
Confidence 9999999888644
No 22
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=9.6e-41 Score=296.44 Aligned_cols=168 Identities=20% Similarity=0.305 Sum_probs=139.1
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec------------------------------
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH------------------------------ 52 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~------------------------------ 52 (179)
++.++++||+||.+.+++|+||.++||+||+||+|+++.++++++.|.+.
T Consensus 164 ~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (572)
T PLN02221 164 TNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLI 243 (572)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhh
Confidence 56789999999999999999999999999999999998776666666541
Q ss_pred ----------------------------------------------------------cccccceeeeeechhhhhhhhh
Q 030343 53 ----------------------------------------------------------HNDLNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 53 ----------------------------------------------------------~~~~~~~~~L~~S~ql~~~~~~ 74 (179)
.+|||+++||++|||||+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~- 322 (572)
T PLN02221 244 VKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY- 322 (572)
T ss_pred hhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-
Confidence 168999999999999999964
Q ss_pred hccchheeecccccccccCC-CCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEE--ecCCCCC---CCc
Q 030343 75 VGGLDRVYEIGKQFRNEGID-LTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIK--YHASGLD---KDP 148 (179)
Q Consensus 75 ~~~~~kvf~i~~~fR~E~~~-~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~--~~~~~~~---~~~ 148 (179)
+++++|||+||||||||+++ .|||+||||+|+|+++.+++|+|+++|++|+++++.+.+.+.-. +.....+ .+.
T Consensus 323 ~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~ 402 (572)
T PLN02221 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDR 402 (572)
T ss_pred HHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhh
Confidence 57799999999999999985 58999999999999999999999999999999999998764322 2111111 112
Q ss_pred eEeccCCCcccchhhhccceeee
Q 030343 149 IEIDFTPPFRSLNFIYSCKWYKI 171 (179)
Q Consensus 149 ~~~~~~~pf~rity~eAi~~l~~ 171 (179)
+...++.||+||||.||++++..
T Consensus 403 l~~~~~~pf~RIty~EAi~~L~~ 425 (572)
T PLN02221 403 LRMVASTPFGRITYTEAIELLEE 425 (572)
T ss_pred hhhccCCCceEEEHHHHHHHHHh
Confidence 22234689999999999998753
No 23
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-40 Score=283.66 Aligned_cols=159 Identities=33% Similarity=0.587 Sum_probs=143.3
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccc-cccceeeeeechhhhhhhhhhccchh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHN-DLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~-~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
-+|.++..+++|+++..++|.||.++||+||+||+|+.+..++ ++.|-|+.. ..|+-+.|.||||+|+|.+|++|++|
T Consensus 133 RR~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG-ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdR 211 (585)
T COG0173 133 RRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEG-ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDR 211 (585)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCCcc-ccccccccccCCCceeecCCCHHHHHHHHHHhcccc
Confidence 3688999999999999999999999999999999999754333 477776432 45677889999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
+|+|++|||+|...+.+.|||||+|.||+|.+-+|+|+++|+|++++++.+.+ +++..||+||
T Consensus 212 YyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprm 274 (585)
T COG0173 212 YYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRM 274 (585)
T ss_pred eeeeeeeecccccccccCCcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccc
Confidence 99999999999999999999999999999999999999999999999998654 3556799999
Q ss_pred hhhhccceeeeecCCCCC
Q 030343 161 NFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 161 ty~eAi~~l~~d~pd~~~ 178 (179)
||.||+..||+||||||-
T Consensus 275 tY~eAm~~YGSDKPDlRf 292 (585)
T COG0173 275 TYAEAMRRYGSDKPDLRF 292 (585)
T ss_pred cHHHHHHHhCCCCCcccC
Confidence 999999999999999983
No 24
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=1.7e-39 Score=288.36 Aligned_cols=167 Identities=19% Similarity=0.323 Sum_probs=138.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec------------------------------
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH------------------------------ 52 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~------------------------------ 52 (179)
++.++++||+||.+..++|+||.++||+||+||+|+++.++++++.|.+.
T Consensus 208 ~~~~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 287 (586)
T PTZ00425 208 SYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILN 287 (586)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccc
Confidence 57789999999999999999999999999999999998877666666641
Q ss_pred -------------------------------cccccceeeeeechhhhhhhhhhccchheeecccccccccCCC-CCCCC
Q 030343 53 -------------------------------HNDLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL-THNPE 100 (179)
Q Consensus 53 -------------------------------~~~~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~~~fR~E~~~~-~Hl~E 100 (179)
.+|||+++||++|||||+|+ +++|++|||+||||||+|++++ ||++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~-~~~g~~rVf~i~p~FRaE~s~t~RHL~E 366 (586)
T PTZ00425 288 TCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLEN-LCSSMGDVYTFGPTFRAENSHTSRHLAE 366 (586)
T ss_pred cccccccccccccccccccccccccccccccccccCcceEEEcCchHHHHH-HHhccCCEEEEeceEeCCCCCCCCCCcc
Confidence 15899999999999999995 5688999999999999999875 89999
Q ss_pred cchhhHHHhhcchhHHHHHHHHHHHhhhhhhhccee--EEecCCCCCCCc---eEeccCCCcccchhhhccceee
Q 030343 101 FTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYK--IKYHASGLDKDP---IEIDFTPPFRSLNFIYSCKWYK 170 (179)
Q Consensus 101 F~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~pf~rity~eAi~~l~ 170 (179)
|||+|+|++|++++++|+++|++|+++++.+++.+. +.+......... +...+..||+||||+||++++.
T Consensus 367 Ft~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~ 441 (586)
T PTZ00425 367 FWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQ 441 (586)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 999999999999999999999999999999887643 333221111111 1112357999999999999874
No 25
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.5e-39 Score=288.74 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=139.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec----------------------------cc
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH----------------------------HN 54 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~----------------------------~~ 54 (179)
++..++++++||.+..++|+||.++||+||+||+|+++.+|++++.|.+. .+
T Consensus 219 t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 219 TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchh
Confidence 45689999999999999999999999999999999998766656666431 25
Q ss_pred cccceeeeeechhhhhhhhhhccchheeecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 55 DLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 55 ~~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
|||+++||++|||||+|+ ++++++|||+||||||+|++++ |||+||||+|+|++|++++|+|+++|++|+++++.+++
T Consensus 299 yF~~~~~LtvS~QL~~E~-~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~ 377 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGET-YATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILE 377 (565)
T ss_pred hhCcceeeccCchHHHHH-HHhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999995 6789999999999999999986 89999999999999999999999999999999999988
Q ss_pred ceeEEe--cCCCCCCC---ceEeccCCCcccchhhhccceeee
Q 030343 134 SYKIKY--HASGLDKD---PIEIDFTPPFRSLNFIYSCKWYKI 171 (179)
Q Consensus 134 ~~~~~~--~~~~~~~~---~~~~~~~~pf~rity~eAi~~l~~ 171 (179)
++.-++ .....+.. .++..+..||+||||+||++++..
T Consensus 378 ~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~ 420 (565)
T PLN02603 378 NCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLK 420 (565)
T ss_pred ccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 764332 21110110 111123579999999999998854
No 26
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=3.6e-39 Score=285.51 Aligned_cols=167 Identities=21% Similarity=0.328 Sum_probs=139.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
-++.++++|++||.+++++|+||.++||+||+||+|+++.+++++.+|.+ +|+|+++||++|||+|+|+++++|++||
T Consensus 217 R~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rV 294 (530)
T PLN02850 217 RTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL--DYKGQPACLAQSPQLHKQMAICGDFRRV 294 (530)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee--ccCCcceecCCCHHHHHHHHHHhcCCce
Confidence 36789999999999999999999999999999999987665555678987 6899999999999999999999999999
Q ss_pred eecccccccccCC-CCCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 82 YEIGKQFRNEGID-LTHNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 82 f~i~~~fR~E~~~-~~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
|+||||||||++. .+|++||||+||||++. +++|+|+++|+||++++..+.+.+..++...........+.+..+++|
T Consensus 295 feIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~r 374 (530)
T PLN02850 295 FEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLR 374 (530)
T ss_pred EEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCccc
Confidence 9999999999974 58999999999999987 699999999999999999887765333211111111011233457889
Q ss_pred chhhhccceee
Q 030343 160 LNFIYSCKWYK 170 (179)
Q Consensus 160 ity~eAi~~l~ 170 (179)
+||.||++++.
T Consensus 375 it~~ea~~~L~ 385 (530)
T PLN02850 375 LTFAEGIQMLK 385 (530)
T ss_pred CCHHHHHHHHH
Confidence 99999998885
No 27
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=1.1e-39 Score=284.80 Aligned_cols=169 Identities=22% Similarity=0.336 Sum_probs=140.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceecc-------ccccceeeeeechhhhhhhhhh
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHH-------NDLNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~-------~~~~~~~~L~~S~ql~~~~~~~ 75 (179)
++..++++++||.|++++|+||.++||+||+||+|+++++|+++++|.+.. +|+|+++||++|||+|+|+ ++
T Consensus 129 ~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~-l~ 207 (453)
T TIGR00457 129 TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLET-YA 207 (453)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHH-Hh
Confidence 466789999999999999999999999999999999887777778887741 2799999999999999995 46
Q ss_pred ccchheeecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCC-----Cce
Q 030343 76 GGLDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDK-----DPI 149 (179)
Q Consensus 76 ~~~~kvf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~-----~~~ 149 (179)
+|++|||+||||||+|++++ ||++||||+|+|+++++++|+|+++|++++++++.+.+.+...+...+.+. ..+
T Consensus 208 ~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (453)
T TIGR00457 208 LALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRL 287 (453)
T ss_pred hcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHH
Confidence 89999999999999999996 899999999999999999999999999999999998875432221111110 011
Q ss_pred EeccCCCcccchhhhccceeeee
Q 030343 150 EIDFTPPFRSLNFIYSCKWYKIY 172 (179)
Q Consensus 150 ~~~~~~pf~rity~eAi~~l~~d 172 (179)
+..+..||+||||.||++++...
T Consensus 288 ~~~~~~~~~rit~~ea~~~l~~~ 310 (453)
T TIGR00457 288 ENIINNKFARITYTDAIEILKES 310 (453)
T ss_pred HHhcCCCCceeEHHHHHHHHHhc
Confidence 11235699999999999988643
No 28
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-39 Score=284.48 Aligned_cols=168 Identities=24% Similarity=0.426 Sum_probs=139.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceecc-------ccccceeeeeechhhhhhhhhh
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHH-------NDLNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~-------~~~~~~~~L~~S~ql~~~~~~~ 75 (179)
++.+++++++||.|++++|+||.++||+||+||+|+++.+++++++|.+.. +++|.++||++|||+|+|+ ++
T Consensus 126 ~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~-l~ 204 (450)
T PRK03932 126 TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEA-YA 204 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHH-HH
Confidence 567899999999999999999999999999999999887777788898744 6899999999999999986 56
Q ss_pred ccchheeecccccccccCC-CCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhccee--EEecCCCCCCCceE-e
Q 030343 76 GGLDRVYEIGKQFRNEGID-LTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYK--IKYHASGLDKDPIE-I 151 (179)
Q Consensus 76 ~~~~kvf~i~~~fR~E~~~-~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~--~~~~~~~~~~~~~~-~ 151 (179)
+|++|||+||||||+|+++ .+|++||||+|||+++++++|+|+++|++|+.+++.+++.+. +++.........+. .
T Consensus 205 ~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 284 (450)
T PRK03932 205 MALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERL 284 (450)
T ss_pred hccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHH
Confidence 8999999999999999985 599999999999999999999999999999999998876543 21111100001110 0
Q ss_pred -c-cCCCcccchhhhccceeee
Q 030343 152 -D-FTPPFRSLNFIYSCKWYKI 171 (179)
Q Consensus 152 -~-~~~pf~rity~eAi~~l~~ 171 (179)
+ ++.||+||||.||++++..
T Consensus 285 ~~~~~~p~~rity~eA~~~l~~ 306 (450)
T PRK03932 285 ENFIESPFPRITYTEAIEILQK 306 (450)
T ss_pred HhhcCCCceEeEHHHHHHHHHH
Confidence 1 3579999999999987754
No 29
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=1.5e-38 Score=265.58 Aligned_cols=138 Identities=30% Similarity=0.542 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHhhccCCceeeecccccccc-ccccCCCceecc---ccccceeeeeechhhhhhhhhhccchheeecc
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-GGAAARPFVTHH---NDLNMKLYMRIAPELYLKELVVGGLDRVYEIG 85 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-~~~~~~~f~~~~---~~~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~ 85 (179)
+++|+.+++++|+||.++||+||+||+|++++ +++++++|.+.. +.+++++||++|||+|+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 57899999999999999999999999999874 556688998732 23457999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccchhhhc
Q 030343 86 KQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYS 165 (179)
Q Consensus 86 ~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA 165 (179)
||||||+++.+|++||||||||+++.+++|+|+++|++++++++. ++.||+||||.||
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~----------------------~~~~~~~it~~ea 138 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD----------------------PFAPWERLSYQEA 138 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh----------------------cCCCcEEEEHHHH
Confidence 999999998999999999999999999999999999999998874 1368999999999
Q ss_pred ccee
Q 030343 166 CKWY 169 (179)
Q Consensus 166 i~~l 169 (179)
++.+
T Consensus 139 ~~~~ 142 (304)
T TIGR00462 139 FLRY 142 (304)
T ss_pred HHHH
Confidence 7633
No 30
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=1.5e-38 Score=261.38 Aligned_cols=154 Identities=47% Similarity=0.837 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchheeecccccc
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFR 89 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~~~fR 89 (179)
+++||.+++++|+||.++||+||+||+|+++++|+++++|.+....+|+++||++|||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 57999999999999999999999999999877777778887632224899999999999999888899999999999999
Q ss_pred cccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccchhhhcccee
Q 030343 90 NEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKWY 169 (179)
Q Consensus 90 ~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l 169 (179)
+|..+.+|++||||+|+|+++.+++|+|+++|++|+++++.+.+.+...+.. ...+++.||+||||.||++.|
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~-------~~~~~~~~~~rit~~ea~~~~ 153 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGF-------ELEDFGLPFPRLTYREALERY 153 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccc-------cccccCCCceEeeHHHHHHHh
Confidence 9988889999999999999999999999999999999999888765433311 113457899999999999988
Q ss_pred e
Q 030343 170 K 170 (179)
Q Consensus 170 ~ 170 (179)
+
T Consensus 154 ~ 154 (269)
T cd00669 154 G 154 (269)
T ss_pred C
Confidence 5
No 31
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-38 Score=279.21 Aligned_cols=131 Identities=25% Similarity=0.487 Sum_probs=121.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
-++.++++|++||.+++++|+||.++||+||+||+|++++++++++.|.+ +|||.++||++|||+|+|+++++|++||
T Consensus 205 R~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rV 282 (550)
T PTZ00401 205 RTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL--EYFNRFAYLAQSPQLYKQMVLQGDVPRV 282 (550)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc--ccCCCCeecCCCHHHHHHHHHhcCCCCE
Confidence 36889999999999999999999999999999999998776666788976 7899999999999999998888899999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGS 134 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~ 134 (179)
|+||||||+|++++ ||++||||||||+++. +++|+|+++|+||++++..+.+.
T Consensus 283 feI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~ 337 (550)
T PTZ00401 283 FEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH 337 (550)
T ss_pred EEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999985 8999999999999985 79999999999999999988764
No 32
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=1.3e-36 Score=251.09 Aligned_cols=143 Identities=31% Similarity=0.593 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceecccc-ccceeeeeechhhhhhhhhhccchheeeccccc
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHND-LNMKLYMRIAPELYLKELVVGGLDRVYEIGKQF 88 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~~~f 88 (179)
+++||.+++++|+||.++||+||+||+|+++++++ +.+|.+.... .+..+||++|||+|+|+++++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g-~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEG-ARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCC-CCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 57999999999999999999999999999765543 3457653322 245566999999999999999999999999999
Q ss_pred ccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccchhhhccce
Q 030343 89 RNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLNFIYSCKW 168 (179)
Q Consensus 89 R~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~ 168 (179)
|+|+++++|.+||||+|||+++.+++|+|+++|++|+.+++.+.+. ++..||+||||.||++.
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~~~ 142 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAMER 142 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHHHH
Confidence 9999998777799999999999999999999999999999887642 23579999999999998
Q ss_pred ee
Q 030343 169 YK 170 (179)
Q Consensus 169 l~ 170 (179)
++
T Consensus 143 ~~ 144 (280)
T cd00777 143 YG 144 (280)
T ss_pred hC
Confidence 86
No 33
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-36 Score=258.34 Aligned_cols=158 Identities=32% Similarity=0.552 Sum_probs=140.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccC-Cceeeecccccc-ccccccCCCceeccccc-cceeeeeechhhhhhhhhhccc
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNL-DFLEVETPMMNM-IAGGAAARPFVTHHNDL-NMKLYMRIAPELYLKELVVGGL 78 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~-gF~ev~tP~l~~-~~~~~~~~~f~~~~~~~-~~~~~L~~S~ql~~~~~~~~~~ 78 (179)
-+++++..+++||.+...+|+||.++ ||+||+||.|-. +|||+ +.|.+..... |.-+.|.||||+|+|++|++|+
T Consensus 170 R~~kmq~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA--~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGi 247 (628)
T KOG2411|consen 170 RRPKMQNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTPGGA--REFVVPTRTPRGKFYALPQSPQQFKQLLMVSGI 247 (628)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCCCcc--ceeecccCCCCCceeecCCCHHHHHHHHHHhch
Confidence 36889999999999999999999886 799999999976 57764 6777654433 6778899999999999999999
Q ss_pred hheeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcc
Q 030343 79 DRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFR 158 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ 158 (179)
+|+|+|++|||+|.....+.|||||+|.||+|.+.+|+|+++|+++++++....+ .....||+
T Consensus 248 drYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~-----------------~~l~~PF~ 310 (628)
T KOG2411|consen 248 DRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKG-----------------IQLPVPFP 310 (628)
T ss_pred hhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcC-----------------CCCCCCcc
Confidence 9999999999999999999999999999999999999999999999998876432 24478999
Q ss_pred cchhhhccceeeeecCCCCC
Q 030343 159 SLNFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 159 rity~eAi~~l~~d~pd~~~ 178 (179)
||||.||+..||+||||.|.
T Consensus 311 riTY~~Am~~YG~DKPD~Rf 330 (628)
T KOG2411|consen 311 RITYADAMDKYGSDKPDTRF 330 (628)
T ss_pred cccHHHHHHHhCCCCCcccC
Confidence 99999999999999999974
No 34
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-36 Score=250.86 Aligned_cols=168 Identities=21% Similarity=0.328 Sum_probs=144.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec------cccccceeeeeechhhhhhhhhhcc
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH------HNDLNMKLYMRIAPELYLKELVVGG 77 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~------~~~~~~~~~L~~S~ql~~~~~~~~~ 77 (179)
....+++|+||.+..++++||.+++|++|+||+|++++|++..+.|.+. .++||+++||++|+|+|++ .++.+
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE-~~a~~ 204 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLE-AMACA 204 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHH-HHHhh
Confidence 3567999999999999999999999999999999999998878888763 3589999999999999999 78999
Q ss_pred chheeecccccccccCCC-CCCCCcchhhHHHhhcc-hhHHHHHHHHHHHhhhhhhhccee--EEec--CCCCC-CCceE
Q 030343 78 LDRVYEIGKQFRNEGIDL-THNPEFTTCEFYMAFAD-YNDLMELTEKMLSGMIKEITGSYK--IKYH--ASGLD-KDPIE 150 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~--~~~~--~~~~~-~~~~~ 150 (179)
+.|+|.+||+||+|++++ |||+||||+|.|++|++ ++|+|+++|.+++++++.+++++. +++. +..+. .+.+.
T Consensus 205 LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~ 284 (446)
T KOG0554|consen 205 LSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLE 284 (446)
T ss_pred hcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhh
Confidence 999999999999999986 89999999999999997 999999999999999999998753 3331 11111 22333
Q ss_pred eccCCCcccchhhhccceeeee
Q 030343 151 IDFTPPFRSLNFIYSCKWYKIY 172 (179)
Q Consensus 151 ~~~~~pf~rity~eAi~~l~~d 172 (179)
..++.+|.+|||.||+++|..-
T Consensus 285 ~~~~~~~~~~tYteAie~L~~a 306 (446)
T KOG0554|consen 285 LVAKENLLRITYTEAIELLQKA 306 (446)
T ss_pred hhccchhhhccHHHHHHHHHHh
Confidence 3456779999999999998543
No 35
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-36 Score=253.28 Aligned_cols=166 Identities=23% Similarity=0.401 Sum_probs=143.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhee
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRVY 82 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kvf 82 (179)
.|.++++|++++.++.++|+++..+||+||+||.|.+.+.++++..|.+ +||+.++||+||||||+||+++++++|||
T Consensus 221 tptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v--~Yfk~~A~LAQSPQLyKQMaI~gdf~rVy 298 (533)
T KOG0556|consen 221 TPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV--SYFKQKAYLAQSPQLYKQMAICGDFERVY 298 (533)
T ss_pred cccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE--EeccCcchhhcChHHHHHHHHhcchhhee
Confidence 5788999999999999999999999999999999998776666788986 89999999999999999999999999999
Q ss_pred ecccccccccCCC-CCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 83 EIGKQFRNEGIDL-THNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 83 ~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
+||||||+|++.+ ||+.||+-||.||++. .|+|+|+++.+++..+++.+.+.+.-++...+......+..+..|--|+
T Consensus 299 eIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl 378 (533)
T KOG0556|consen 299 EIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRL 378 (533)
T ss_pred eecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEe
Confidence 9999999999886 8999999999999996 6999999999999999999988765444222111111123445777899
Q ss_pred hhhhccceee
Q 030343 161 NFIYSCKWYK 170 (179)
Q Consensus 161 ty~eAi~~l~ 170 (179)
+|.||+++|.
T Consensus 379 ~~~e~v~mLr 388 (533)
T KOG0556|consen 379 TFKEGVAMLR 388 (533)
T ss_pred ehHHHHHHHH
Confidence 9999999984
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=2.3e-34 Score=240.55 Aligned_cols=139 Identities=32% Similarity=0.502 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc-ccccCCCceeccc----cccceeeeeechhhhhhhhhhccchhe
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-GGAAARPFVTHHN----DLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-~~~~~~~f~~~~~----~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
..++++|+.+++++|+||.++||+||+||+|+..+ .++...+|.+... ..|+.+||++|||+++|++++++++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 47899999999999999999999999999998754 3445566765321 237899999999999999998999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||+|+++.+|++||||+|||+++++++|+|+++|+||+.++.. .||++|+
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------------------------~~~~~i~ 137 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------------------EPAESLS 137 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------------------------CCceEEE
Confidence 9999999999998899999999999999999999999999999987642 4677888
Q ss_pred hhhcccee
Q 030343 162 FIYSCKWY 169 (179)
Q Consensus 162 y~eAi~~l 169 (179)
|.||++.+
T Consensus 138 ~~eaf~~~ 145 (306)
T PRK09350 138 YQQAFLRY 145 (306)
T ss_pred HHHHHHHH
Confidence 88887544
No 37
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-32 Score=229.97 Aligned_cols=160 Identities=22% Similarity=0.372 Sum_probs=137.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc--cccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI--AGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~--~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.+.++++++|+.+++++|++|.+.||+||.+|.+.++ .||+ -.|.. +|+|.++||+||+|||++.++ +.+++|
T Consensus 237 e~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGs--TLFkl--dYyGEeAyLTQSSQLYLEtcl-pAlgdv 311 (545)
T KOG0555|consen 237 ENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGS--TLFKL--DYYGEEAYLTQSSQLYLETCL-PALGDV 311 (545)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcc--eEEee--cccCchhhccchhHHHHHHhh-hhcCce
Confidence 4678999999999999999999999999999999875 4554 45764 899999999999999999765 679999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEe-cCCCCCCCceEeccCCCccc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKY-HASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pf~r 159 (179)
|+|+++||+|.+.+ |||+|||++|+|++|.+++++|+.+|+|+++.+.+++++....+ ...+++.+ ..++||.|
T Consensus 312 y~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~----~P~~PFkR 387 (545)
T KOG0555|consen 312 YCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFK----APKRPFKR 387 (545)
T ss_pred eEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCC----CCCCchhc
Confidence 99999999999987 69999999999999999999999999999999999988643321 22233321 23799999
Q ss_pred chhhhccceeeee
Q 030343 160 LNFIYSCKWYKIY 172 (179)
Q Consensus 160 ity~eAi~~l~~d 172 (179)
|.|.|||++|+..
T Consensus 388 m~Y~dAI~wLke~ 400 (545)
T KOG0555|consen 388 MNYSDAIEWLKEH 400 (545)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999654
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-30 Score=210.05 Aligned_cols=123 Identities=33% Similarity=0.551 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccccc-ccCCCceecc----ccccceeeeeechhhhhhhhhhccchhee
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGG-AAARPFVTHH----NDLNMKLYMRIAPELYLKELVVGGLDRVY 82 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~-~~~~~f~~~~----~~~~~~~~L~~S~ql~~~~~~~~~~~kvf 82 (179)
..+..|+.|+++||+||.++||+||+||.|+.+++. ....+|+|.. ...+.+.||++||++++|++++.|.++||
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 458899999999999999999999999999877643 3456777621 12357899999999999999999999999
Q ss_pred ecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhh
Q 030343 83 EIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKE 130 (179)
Q Consensus 83 ~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~ 130 (179)
+||+||||++.+..|.|||||+|||.+++++..+|+.+.+|+..+++.
T Consensus 94 ql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~ 141 (322)
T COG2269 94 QLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC 141 (322)
T ss_pred hhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999887774
No 39
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.42 E-value=1.8e-13 Score=118.15 Aligned_cols=125 Identities=21% Similarity=0.366 Sum_probs=92.2
Q ss_pred ChhhhhHHHH-----HHHHHHHHHHhhccCCceeeecccccccc----ccccC-CCceeccccccceeeee--echhhhh
Q 030343 3 NVEVRQIFKT-----RSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAA-RPFVTHHNDLNMKLYMR--IAPELYL 70 (179)
Q Consensus 3 ~~~~~~~~~~-----rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~-~~f~~~~~~~~~~~~L~--~S~ql~~ 70 (179)
++..++++.+ .+.+.+++|++|.+.||.||.||.|++.. .+... ..+.......+...+|+ ..|+++.
T Consensus 191 ~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ideel~LRpsLtPsLlr 270 (417)
T PRK09537 191 KNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPGLYN 270 (417)
T ss_pred chhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeCCceEehhhhHHHHHH
Confidence 4567788888 99999999999999999999999997531 11110 11100011134568888 5677765
Q ss_pred hhhh----hccchheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 71 KELV----VGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 71 ~~~~----~~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.... .....|+|+||+|||+|..+.+|++||+|++++..+. ++.|++.+++++++.+
T Consensus 271 ~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 271 YLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred HHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 4211 1234689999999999998889999999999999875 4889998888888765
No 40
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.42 E-value=2.2e-13 Score=106.44 Aligned_cols=116 Identities=36% Similarity=0.470 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccccc----ccccCCCceeccccccceeeeeechhhhhhhhhhc----cchheee
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG----GLDRVYE 83 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~----~~~kvf~ 83 (179)
+|+.+.+.+|++|.+.||.||.||.+++.. .+...+......+..+...+|++|....+...++. ...|+|+
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 378899999999999999999999998742 11111112222234567789999999988766654 4579999
Q ss_pred cccccccccCCC--CCCCCcchhhHHHhhcc------hhHHHHHHHHHHHhh
Q 030343 84 IGKQFRNEGIDL--THNPEFTTCEFYMAFAD------YNDLMELTEKMLSGM 127 (179)
Q Consensus 84 i~~~fR~E~~~~--~Hl~EF~~le~e~~~~~------~~~lm~~~e~li~~~ 127 (179)
+|+|||.|..+. +|+.||+|+++++.+.+ +.++++.++++++.+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 999999987655 78999999999998853 577888888888655
No 41
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.33 E-value=2e-12 Score=109.01 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccc---------cccccCCCceeccccccceeeee--echhhhhhhhhhccchhe
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMI---------AGGAAARPFVTHHNDLNMKLYMR--IAPELYLKELVVGGLDRV 81 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~---------~~~~~~~~f~~~~~~~~~~~~L~--~S~ql~~~~~~~~~~~kv 81 (179)
-+.+.+.||++|...||.|+.+|.|++. |.+++++..+. ..|.+....|| +||.+..-+.-.....|+
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~D-TfyI~~~~lLRThTSp~qir~L~~~~~Piri 188 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQD-TFYIDDGLLLRTHTSPVQIRTMEKQKPPIRI 188 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCc-eEEEcCCceeeccCcHHHHHHHHhcCCCeEE
Confidence 4678999999999999999999999863 34455555542 23445566776 667655432222345699
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHhhhh
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~~~~ 129 (179)
|++|+|||++..|++|.++|+|+|+-+++ .++.++...++.+++.++.
T Consensus 189 f~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 189 IAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997777 4799999999999999886
No 42
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.32 E-value=1.8e-12 Score=105.52 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccc---------cccccCCCc----eeccccc--cceeeeee--chhhhhhhhh-
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMI---------AGGAAARPF----VTHHNDL--NMKLYMRI--APELYLKELV- 74 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~---------~~~~~~~~f----~~~~~~~--~~~~~L~~--S~ql~~~~~~- 74 (179)
-+.+.+.++++|...||.|+.+|.+++. |.++.++.. .+..... .....||+ ||.+.. .+
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~--~l~ 96 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLR--TLN 96 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHH--HHT
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHH--HHH
Confidence 4678899999999999999999999763 344444333 2211222 56677774 444442 33
Q ss_pred --hccchheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhhhhh
Q 030343 75 --VGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGMIKE 130 (179)
Q Consensus 75 --~~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~~~~ 130 (179)
.....|+|++|+|||+|..|++|+++|+|+|.-+++. ++.+++..++.+++.++..
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~ 156 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI 156 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc
Confidence 3456899999999999999999999999999988774 6999999999999988763
No 43
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.1e-12 Score=107.45 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccc---------cccccCCCceeccccccce---eeee--echhhhhhhhhhcc-
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMI---------AGGAAARPFVTHHNDLNMK---LYMR--IAPELYLKELVVGG- 77 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~---------~~~~~~~~f~~~~~~~~~~---~~L~--~S~ql~~~~~~~~~- 77 (179)
-..+++.++++|.+.||.++..|.+++. |..++++..+. ..|++.. .-|| +||-....+.-...
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqD-TFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~ 191 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQD-TFYLKDDREKLLLRTHTSPVQARTLAENAKI 191 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccc-eEEEcCCCCceeecccCcHhhHHHHHhCCCC
Confidence 3568899999999999999999988863 45566666653 2344432 4565 56655444222122
Q ss_pred chheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhhhhh
Q 030343 78 LDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGMIKE 130 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~~~~ 130 (179)
..|+|++|+|||+|..|++|+++|+|+|.-+++- ++.+|+.+++++++.++..
T Consensus 192 P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~ 246 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGE 246 (335)
T ss_pred CceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999877664 6899999999999998863
No 44
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.29 E-value=4e-12 Score=110.04 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccccc----ccc-cCCCceeccccccceeeee--echhhhhhhhh----hccchh
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA-AARPFVTHHNDLNMKLYMR--IAPELYLKELV----VGGLDR 80 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~-~~~~f~~~~~~~~~~~~L~--~S~ql~~~~~~----~~~~~k 80 (179)
-.+.+.+.+|++|...||.||.||+|++.. .+. ......-....++...+|| ..|+++..... .....|
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqK 320 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIK 320 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecCceEecccCHHHHHHHHHHhhhhccCCee
Confidence 467899999999999999999999997321 111 0000100011134567888 66777743211 123569
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
+|+||+|||+|..+.+|+.||+|+++++++. ++.|+..++.++++.+
T Consensus 321 IFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 321 IFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred EEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999885 5888888777777654
No 45
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.7e-12 Score=109.10 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=96.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------cccc---CCCceeccccccceeeeeechhhhhhh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAA---ARPFVTHHNDLNMKLYMRIAPELYLKE 72 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~---~~~f~~~~~~~~~~~~L~~S~ql~~~~ 72 (179)
+++..-.-...|.++.+.+|+.|...||.||.||++...+ |+.+ .+...+..+..|+.+.||.-..-..-+
T Consensus 10 ~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R 89 (429)
T COG0124 10 TRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVAR 89 (429)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHH
Confidence 3455667788999999999999999999999999998642 3331 244444566788899998544444444
Q ss_pred hhh------ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 73 LVV------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 73 ~~~------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
+++ ....|.|++|||||.|+++..+..||+|+++|+.+.+ -.|++.++-++++.
T Consensus 90 ~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 90 AVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred HHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 433 2347999999999999999999999999999999963 67888887777764
No 46
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.20 E-value=1.9e-11 Score=107.61 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccCCceeeecc-ccccc---------cccccCCCceecccccc-------------------------
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETP-MMNMI---------AGGAAARPFVTHHNDLN------------------------- 57 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP-~l~~~---------~~~~~~~~f~~~~~~~~------------------------- 57 (179)
-..+.+.+|++|.+.||.|+.+| .+.+. |..++++..+. ..|.+
T Consensus 231 l~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~D-TFyl~~~~~~~~~~~p~~~~~~Vk~~He~G 309 (494)
T PTZ00326 231 LLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQD-TFFLSKPETSKVNDLDDDYVERVKKVHEVG 309 (494)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCc-eEEEcCccccccccCcHHHHHHHHHHhccC
Confidence 35788899999999999999876 56653 44555554432 11111
Q ss_pred ----------------ceeeee--echhhhhhhhhhc-----------cchheeecccccccccCCCCCCCCcchhhHHH
Q 030343 58 ----------------MKLYMR--IAPELYLKELVVG-----------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYM 108 (179)
Q Consensus 58 ----------------~~~~L~--~S~ql~~~~~~~~-----------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~ 108 (179)
...-|| +|+.... .++. ...|+|+||+|||+|..|++|++||+|+|+.+
T Consensus 310 ~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR--~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~v 387 (494)
T PTZ00326 310 GYGSIGWRYDWKLEEARKNILRTHTTAVSAR--MLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFV 387 (494)
T ss_pred CcCCcccccccccchhccccccCCCCHHHHH--HHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEE
Confidence 234555 3333322 1221 26799999999999999999999999999999
Q ss_pred hhc--chhHHHHHHHHHHHhh
Q 030343 109 AFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 109 ~~~--~~~~lm~~~e~li~~~ 127 (179)
++. ++.+|+.++.++++.+
T Consensus 388 i~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 388 IDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred EeCCCCHHHHHHHHHHHHHhc
Confidence 885 5889999988888775
No 47
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.17 E-value=3.5e-11 Score=105.59 Aligned_cols=114 Identities=22% Similarity=0.238 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhccCCceee-eccccccc---------cccccCCCceecccccc-------------------------
Q 030343 13 RSKIVSYIRRFLDNLDFLEV-ETPMMNMI---------AGGAAARPFVTHHNDLN------------------------- 57 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev-~tP~l~~~---------~~~~~~~~f~~~~~~~~------------------------- 57 (179)
-..+.+.||++|.+.||.|+ ..|.+.+. |..++++..+. ..|.+
T Consensus 223 l~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qD-TFyl~~~~~~~~~p~~~~erVk~~He~G~~ 301 (492)
T PLN02853 223 LLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHD-TFFLKAPATTRQLPEDYVERVKTVHESGGY 301 (492)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccc-eEEEcCccccccCcHHHHHHHHHHHhcCCC
Confidence 35678899999999999999 57888763 45555554432 11111
Q ss_pred --------------ceeeee--echhhhhhhh-hh-c--cchheeecccccccccCCCCCCCCcchhhHHHhhc--chhH
Q 030343 58 --------------MKLYMR--IAPELYLKEL-VV-G--GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYND 115 (179)
Q Consensus 58 --------------~~~~L~--~S~ql~~~~~-~~-~--~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~ 115 (179)
...-|| +|+-....+. ++ . ...|+|+||+|||+|..|++|++||+|+|.-+++. ++.+
T Consensus 302 gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~ 381 (492)
T PLN02853 302 GSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGD 381 (492)
T ss_pred CccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHH
Confidence 234554 3332221111 11 1 35699999999999999999999999999988864 6999
Q ss_pred HHHHHHHHHHhh
Q 030343 116 LMELTEKMLSGM 127 (179)
Q Consensus 116 lm~~~e~li~~~ 127 (179)
|+.+++++++.+
T Consensus 382 L~g~l~~f~~~l 393 (492)
T PLN02853 382 LIGVLEDFFSRL 393 (492)
T ss_pred HHHHHHHHHHHc
Confidence 999999998875
No 48
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.13 E-value=1.5e-10 Score=94.71 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhccCCceeeecccccccc----c-cc--cCCCceeccccccceeeeeechhhhhhhhhh------c
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----G-GA--AARPFVTHHNDLNMKLYMRIAPELYLKELVV------G 76 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~-~~--~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~------~ 76 (179)
.+++..+.+.+++.|.++||.||.||.+.+.. + +. ..+.|.. .+..|+.+.|+.-.....-+..+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~ 80 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRF-KDKGGRDLALRPDLTAPVARAVAENLLSLP 80 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEE-ECCCCCEEEeCCCCcHHHHHHHHhcCccCC
Confidence 46789999999999999999999999998742 1 11 1223332 24456788888444333333332 2
Q ss_pred cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 77 GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 77 ~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
...|+|++|+|||.|..+..|..||+|+++|+.+.+ ..|++.++.++++.
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~ 134 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEA 134 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHH
Confidence 356999999999999998889999999999998863 23455555555543
No 49
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.08 E-value=3.3e-10 Score=97.79 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=85.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc-----CCCceeccccccceeeeeechhhhhhhh
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA-----ARPFVTHHNDLNMKLYMRIAPELYLKEL 73 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~-----~~~f~~~~~~~~~~~~L~~S~ql~~~~~ 73 (179)
.....-.+++..+.+.+++.|.++||.||.||++.... +|.. .+.|.. .+..|+.+.|+.-.....-+.
T Consensus 8 d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~ 86 (397)
T TIGR00442 8 DFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTF-KDKGGRSLTLRPEGTAPVARA 86 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEE-ECCCCCEEeecCCCcHHHHHH
Confidence 34556778999999999999999999999999998631 1111 122332 244577888884433333333
Q ss_pred hhc------cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 74 VVG------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 74 ~~~------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
++. ...|+|++|+|||.|+.+..|..||+|+++|+.+.+ -.|++.++.+++..
T Consensus 87 ~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~ 149 (397)
T TIGR00442 87 VIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKE 149 (397)
T ss_pred HHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 321 246999999999999988889999999999998854 23555555555543
No 50
>PLN02530 histidine-tRNA ligase
Probab=99.06 E-value=3.7e-10 Score=100.20 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=91.5
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc------cccccCCCceeccccccceeeeeechhhhhhhhhhc
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI------AGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG 76 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~------~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~ 76 (179)
++....-.+.+..+.+.+++.|..+||.||.||++... .|+...+......+..|+.+.||.-.....-++++.
T Consensus 77 ~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~ 156 (487)
T PLN02530 77 RDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQ 156 (487)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHh
Confidence 34556678899999999999999999999999999873 122222222222455677888885544444444432
Q ss_pred ------cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhh
Q 030343 77 ------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGM 127 (179)
Q Consensus 77 ------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~ 127 (179)
..-|.|++|+|||.|+.+..+..||+|+++|+.+.+ ..|++.++.+.++.+
T Consensus 157 ~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 157 KGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred cccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 235999999999999999999999999999998853 557777766666543
No 51
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.06 E-value=3.7e-10 Score=98.77 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=88.5
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------cccc----CCCceeccccccceeeeeechhhhhhh
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAA----ARPFVTHHNDLNMKLYMRIAPELYLKE 72 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~ 72 (179)
++....-...+..+.+.+++.|..+||.+|.||++.... |+.. .+.|.. .+..|+.+.||.-.....-+
T Consensus 11 ~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~-~d~~g~~l~LRpd~T~~iaR 89 (430)
T CHL00201 11 KDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF-TDRSNRDITLRPEGTAGIVR 89 (430)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE-EcCCCCEEEeCCCCcHHHHH
Confidence 344556778899999999999999999999999998631 2221 123332 34456788898544444444
Q ss_pred hhhc-------cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 73 LVVG-------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 73 ~~~~-------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
+.+. .+-|.|++|+|||.|+++.....||+|+++|+.+.+ -.|++.++-+.++.
T Consensus 90 ~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 90 AFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred HHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 3211 235999999999999999999999999999998853 34666666666544
No 52
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.05 E-value=3.8e-10 Score=97.53 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=89.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------cccc-CCCceecccc-ccceeeeeechhhhhhhhhh
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAA-ARPFVTHHND-LNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~-~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~ 75 (179)
+....-.+.+..+.+.+++.|..+||.+|.||++.... |+.. .+.+.. .+. .|+.+.||.-.....-+.++
T Consensus 11 D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f-~d~~~g~~l~LRpD~T~~iaR~~a 89 (391)
T PRK12292 11 DLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKL-VDQLSGRTLGLRPDMTAQIARIAA 89 (391)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEE-eecCCCCEEEECCCCcHHHHHHHH
Confidence 44556678899999999999999999999999998531 1111 223332 344 57788888444444444443
Q ss_pred c------cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhh
Q 030343 76 G------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGM 127 (179)
Q Consensus 76 ~------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~ 127 (179)
. ...|+|++|+|||.|+.+..+..||+|+++|+.+.+ -.|++.++-+.++.+
T Consensus 90 ~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 90 TRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred HhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 2 245999999999999999999999999999998853 356777766666544
No 53
>PLN02972 Histidyl-tRNA synthetase
Probab=99.04 E-value=3.9e-10 Score=103.67 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=92.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccccCCCceeccccccceeeeeechhhhhhhhhhcc
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGG 77 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~ 77 (179)
++....-..+|..+...+++.|..+||.||.||++.... .|...+......+..|+.+.||.-.....-+.++..
T Consensus 334 rD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 334 RDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhC
Confidence 345556788999999999999999999999999998631 122222222234556788888865555555555422
Q ss_pred ---chheeecccccccccCCCCCCCCcchhhHHHhhc-c----hhHHHHHHHHHHHh
Q 030343 78 ---LDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA-D----YNDLMELTEKMLSG 126 (179)
Q Consensus 78 ---~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~-~----~~~lm~~~e~li~~ 126 (179)
..|.|++|+|||.|+++..+..||+|+++|+.+. + -.|++.++-+.++.
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred CCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 4589999999999999889999999999999884 2 46777777777754
No 54
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.03 E-value=7.9e-10 Score=95.80 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=86.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc-----CCCceeccccccceeeeeechhhhhhhh
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA-----ARPFVTHHNDLNMKLYMRIAPELYLKEL 73 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~-----~~~f~~~~~~~~~~~~L~~S~ql~~~~~ 73 (179)
.....-.+.+..+.+.+++.|.++||.||.||.+.... +|.. .+.|.. .+..|+.+.|+.-.....-+.
T Consensus 12 d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~~ar~ 90 (412)
T PRK00037 12 DILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTF-QDKGGRSLTLRPEGTAPVVRA 90 (412)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEE-EcCCCCEEEecCCCcHHHHHH
Confidence 34456678899999999999999999999999997631 1211 122332 233577888884432222223
Q ss_pred hhc---cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 74 VVG---GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 74 ~~~---~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
++. ...|+|++|+|||+|+++..|..||+|+++|+.+.+ ..|++.++.++++.
T Consensus 91 ~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~ 150 (412)
T PRK00037 91 VIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKA 150 (412)
T ss_pred HHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHH
Confidence 332 457999999999999988889999999999998853 25666666665543
No 55
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.00 E-value=5.5e-10 Score=96.35 Aligned_cols=114 Identities=19% Similarity=0.338 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhccC---Cceeee--cccccc--------ccccccCCCceeccccccceeeee--echhhhhhhhhhccc
Q 030343 14 SKIVSYIRRFLDNL---DFLEVE--TPMMNM--------IAGGAAARPFVTHHNDLNMKLYMR--IAPELYLKELVVGGL 78 (179)
Q Consensus 14 s~i~~~ir~ff~~~---gF~ev~--tP~l~~--------~~~~~~~~~f~~~~~~~~~~~~L~--~S~ql~~~~~~~~~~ 78 (179)
+.+.+.|+++|.+. ||.+++ +|+.+. .|.++.++.... ..|.+...-|| +|+-.. ++|..+.
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~D-Tfy~~~~~lLRTHTSa~q~--~~l~~~~ 147 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYND-TYYVDAQTVLRCHTSAHQA--ELLRAGH 147 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccc-eEEecCCccccCCCcHHHH--HHHHhCC
Confidence 46778889999987 999999 555443 145566666652 34667777787 555433 2445566
Q ss_pred hheeecccccccccCCCCCCCCcchhhHHHhh--------------cchhHHHHHHHHHHHhhhhh
Q 030343 79 DRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--------------ADYNDLMELTEKMLSGMIKE 130 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--------------~~~~~lm~~~e~li~~~~~~ 130 (179)
.+++.+|.|||+|..|++|+|+|+|+|.-+.+ .+..++...++.+++.++..
T Consensus 148 ~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 148 THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGD 213 (402)
T ss_pred CcEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999988775 45789999999999877653
No 56
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.99 E-value=6.2e-10 Score=98.83 Aligned_cols=120 Identities=20% Similarity=0.342 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc---------cccccCCCce----ec-------------------c--
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI---------AGGAAARPFV----TH-------------------H-- 53 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~---------~~~~~~~~f~----~~-------------------~-- 53 (179)
.-...+..+.+.+|+.|...||.||.||.+.++ |..++++... .. .
T Consensus 230 ~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g 309 (489)
T PRK04172 230 GKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHG 309 (489)
T ss_pred CCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhcc
Confidence 345568899999999999999999999999853 2222222211 00 0
Q ss_pred -------------ccccceeeeeechhhhhhhhhh---ccchheeecccccccccCCCCCCCCcchhhHHHhhc--chhH
Q 030343 54 -------------NDLNMKLYMRIAPELYLKELVV---GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYND 115 (179)
Q Consensus 54 -------------~~~~~~~~L~~S~ql~~~~~~~---~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~ 115 (179)
+..++...||.+..-..-++++ ....|+|+||+|||+|..+.+|++||+|+++.+.+. ++.+
T Consensus 310 ~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~e 389 (489)
T PRK04172 310 GDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFRD 389 (489)
T ss_pred CCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHHH
Confidence 0012345666443333333333 335799999999999999999999999999999985 5889
Q ss_pred HHHHHHHHHHhh
Q 030343 116 LMELTEKMLSGM 127 (179)
Q Consensus 116 lm~~~e~li~~~ 127 (179)
++.+++++++.+
T Consensus 390 lkg~l~~ll~~l 401 (489)
T PRK04172 390 LLGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 57
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.98 E-value=6.1e-10 Score=85.69 Aligned_cols=115 Identities=24% Similarity=0.282 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhc-cCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh----c--
Q 030343 12 TRSKIVSYIRRFLD-NLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV----G-- 76 (179)
Q Consensus 12 ~rs~i~~~ir~ff~-~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~-- 76 (179)
+++.|.+.+++.+. +.||.||.||.|.+.. .|. ....|.+ .+..+..++|+.+.....-.++. .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~-~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKV-KDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEE-EETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeee-eecccccEEeccccccceeeeecceeeecc
Confidence 57899999999999 9999999999998742 221 1223433 23334678998665444332221 1
Q ss_pred --cchheeeccccccccc-C--CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhh
Q 030343 77 --GLDRVYEIGKQFRNEG-I--DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMI 128 (179)
Q Consensus 77 --~~~kvf~i~~~fR~E~-~--~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~ 128 (179)
-.-++|++|+|||+|. . +..++.||+|.|++....+ ++..+..++++..+.
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYK 135 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHH
Confidence 2469999999999994 3 3479999999999987766 666666665554333
No 58
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.96 E-value=1.1e-09 Score=87.52 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccc----cceeeeeechhhhhhhhhh--
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDL----NMKLYMRIAPELYLKELVV-- 75 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql~~~~~~~-- 75 (179)
.+++..|.+.+++.|.+.||.||.||.|.+.. ++.. ...+.+ .+.. +..++|+.......-...+
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTF-EDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCee-ccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 36788999999999999999999999998742 2211 122222 1222 4678888544333322222
Q ss_pred -----ccchheeecccccccccCC---CCCCCCcchhhHHHhhcc------hhHHHHHHHHHHHhh
Q 030343 76 -----GGLDRVYEIGKQFRNEGID---LTHNPEFTTCEFYMAFAD------YNDLMELTEKMLSGM 127 (179)
Q Consensus 76 -----~~~~kvf~i~~~fR~E~~~---~~Hl~EF~~le~e~~~~~------~~~lm~~~e~li~~~ 127 (179)
...-|++++|+|||+|... ..++.||+|.|++..+.+ ..++++++.++++.+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~l 146 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL 146 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2356999999999999976 468999999999987754 345555555555443
No 59
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.95 E-value=1.3e-09 Score=87.17 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=79.7
Q ss_pred HHHHHHHHhhccCCceeeeccccccccccccCCCceec--------cccccc--eeeeeechhhhhhhhhhc--cchhee
Q 030343 15 KIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH--------HNDLNM--KLYMRIAPELYLKELVVG--GLDRVY 82 (179)
Q Consensus 15 ~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~--------~~~~~~--~~~L~~S~ql~~~~~~~~--~~~kvf 82 (179)
.+.+.+|++|...||.|+.|+.+++.......-.+... .-.... ..+||+|.--.+-..++. ...|+|
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~~~~LR~sLlp~LL~~l~~N~~~~~lF 84 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARALAKLKPPIRIF 84 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCceEEEeccCcHHHHHHHHhcCCCeeEE
Confidence 56778999999999999999999875211000000000 001112 367776643332234444 567999
Q ss_pred ecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhhh
Q 030343 83 EIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGMI 128 (179)
Q Consensus 83 ~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~~ 128 (179)
+||+|||+++.+..|++||+|+++.+++. ++.|++..++.+++.+-
T Consensus 85 EiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 85 SIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred EEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 99999999876778899999999999986 89999999999997553
No 60
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.95 E-value=2.1e-09 Score=93.79 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=90.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----c-ccc----CCCceeccccccceeeeeechhhhhhhh
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----G-GAA----ARPFVTHHNDLNMKLYMRIAPELYLKEL 73 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~-~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~ 73 (179)
++....-..++..+.+.+++.|..+||.||.||++.... . |.+ .+.+. ..+..|+.+.|+.-.....-+.
T Consensus 11 ~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~-~~D~~g~~l~LRpD~T~~iaR~ 89 (423)
T PRK12420 11 KDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYT-LTDQGKRDLALRYDLTIPFAKV 89 (423)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEE-EecCCCceecccccccHHHHHH
Confidence 445566788899999999999999999999999998731 1 211 12233 2344577888884444443333
Q ss_pred hhc-----cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhh
Q 030343 74 VVG-----GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGM 127 (179)
Q Consensus 74 ~~~-----~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~ 127 (179)
++. ..-|.|++|+|||.|+.+..+..||+|+++|+.+.+ ..|++.++-+.++.+
T Consensus 90 va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 90 VAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred HHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 332 134899999999999988889999999999998853 567777777776643
No 61
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.94 E-value=2.3e-09 Score=90.10 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccc-cCCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGA-AARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 6 ~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~-~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
...-.+.+..+.+.+++.|.++||.+|.||++.... ++. ..+.|.. .+..|+.+.|+.-.....-+.++
T Consensus 4 ~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~~~~~~~ 82 (314)
T TIGR00443 4 LPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKL-FDSLGRVLGLRPDMTTPIARAVSTRLR 82 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEE-ECCCCCEEeecCcCcHHHHHHHHHhcc
Confidence 345577899999999999999999999999998731 221 1223332 34457788888433222223322
Q ss_pred --ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 76 --GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 76 --~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
....|+|++|+|||.|+.+..+..||+|+++|+.+.+ -.|++.++-+.++.
T Consensus 83 ~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 83 DRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred cCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 1246999999999999999999999999999998753 34666666655544
No 62
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.93 E-value=2.7e-09 Score=92.34 Aligned_cols=123 Identities=9% Similarity=0.058 Sum_probs=87.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------cccc-CCCceecccc-ccceeeeeechhhhhhhhhh
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAA-ARPFVTHHND-LNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~-~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~ 75 (179)
+....-.+.+..+.+.+++.|..+||.||.||+++... |+.. ...|.. .+. .|+...||.-.....-++.+
T Consensus 15 D~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f-~D~~~g~~l~LRpD~T~~iaR~~a 93 (392)
T PRK12421 15 DVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKL-IDQLSGRLMGVRADITPQVARIDA 93 (392)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEE-EcCCCCcEEEECCcCCHHHHHHHH
Confidence 34456678899999999999999999999999998631 2211 123332 343 35667787433333333322
Q ss_pred -----ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhh
Q 030343 76 -----GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGM 127 (179)
Q Consensus 76 -----~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~ 127 (179)
....|.|++|+|||.++.+.....||+|+++|+.+.+ -.|++.++-+.++.+
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 94 HLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred hhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2357999999999999988889999999999998853 457888877777654
No 63
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.91 E-value=2.1e-09 Score=89.71 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccccc---------ccccCCCceeccccccceeeeeechhhhhhhhhhc---cch
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIA---------GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG---GLD 79 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~---------~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~---~~~ 79 (179)
-...+.+.+|++|...||.|+.||.+++.. .+++++... ...+......||+|----+-+.++. ...
T Consensus 73 p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~-d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pi 151 (294)
T TIGR00468 73 PLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQ-DTFYIKDRLLLRTHTTAVQLRTMEENEKPPI 151 (294)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhc-cceeecCCcceecccHHHHHHHHHhcCCCCc
Confidence 346778889999999999999999998641 111111110 0011223456775432222223333 347
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHhhhh
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~~~~ 129 (179)
|+|++|+|||++..+.+|++||+|+++-+.+ .++.|+...++.++..+..
T Consensus 152 rlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~ 203 (294)
T TIGR00468 152 RIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFG 203 (294)
T ss_pred eEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999988888999999999998765 3799999999999986643
No 64
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.91 E-value=4.4e-09 Score=86.05 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhh----hh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKEL----VV 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~----~~ 75 (179)
.-.+++..|.+.+++.|.+.||.||.||++.+.. .|. ..+.|.+ .+..+++++|+..++-.+-.+ +.
T Consensus 29 ~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~-~d~~~~~l~LrPt~e~~~t~~~~~~i~ 107 (255)
T cd00779 29 LGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL-KDRHGKEFLLGPTHEEVITDLVANEIK 107 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEE-ecCCCCeEEEecCCcHHHHHHHHhccc
Confidence 4567899999999999999999999999998731 222 1122332 233456788886533222111 11
Q ss_pred ---ccchheeecccccccc-cCCCC--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 76 ---GGLDRVYEIGKQFRNE-GIDLT--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E-~~~~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
.-.-|+|++++|||+| +.... +..||+|.|.+..+.+..+.....++++
T Consensus 108 s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~ 162 (255)
T cd00779 108 SYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMY 162 (255)
T ss_pred cHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHH
Confidence 2246999999999999 55455 9999999999988865444444333443
No 65
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=98.88 E-value=2.9e-09 Score=88.96 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=85.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------ccccCCCceeccccccceeeeeechhhhhhhhhhc-
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG- 76 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~- 76 (179)
+....-.+.+..+.+.+++.|..+||.+|.||++.... +....+.+.. .+..|..+.|+.-.....-+.++.
T Consensus 4 d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~-~D~~G~~l~LR~D~T~~iaR~~a~~ 82 (311)
T PF13393_consen 4 DLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRF-LDRSGRVLALRPDLTVPIARYVARN 82 (311)
T ss_dssp -B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEE-ECTTSSEEEE-SSSHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEE-EecCCcEeccCCCCcHHHHHHHHHh
Confidence 34556678899999999999999999999999998631 1222233443 345678888885554444444443
Q ss_pred ----cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHH
Q 030343 77 ----GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLS 125 (179)
Q Consensus 77 ----~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~ 125 (179)
...|+|++|+|||.++.+..+..||+|+.+|+.+.+ -.|++.++-+++.
T Consensus 83 ~~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 83 LNLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp CGSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred cCcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 347899999999999998899999999999998853 4477777777775
No 66
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.87 E-value=5.6e-09 Score=86.64 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=83.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccc--c-ccCCCceeccccccceeeeeechhhhhhhhhhc----
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAG--G-AAARPFVTHHNDLNMKLYMRIAPELYLKELVVG---- 76 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~--~-~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~---- 76 (179)
+....-.+.+..+.+.+++.|..+||.+|.||++..... . ...+.|.. .+..|+.+.||.-.....-+.++.
T Consensus 13 D~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~-~D~~g~~l~LRpD~T~~iaR~~a~~~~~ 91 (281)
T PRK12293 13 LYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRF-SDEKNHQISLRADSTLDVVRIVTKRLGR 91 (281)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEE-ECCCCCEEEECCcCCHHHHHHHHHhccc
Confidence 445566788999999999999999999999999986321 1 11223332 344567788884444333333332
Q ss_pred --cchheeecccccccccCCCCCCCCcchhhHHHhhc-chhHHHHHHHHHHHhh
Q 030343 77 --GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA-DYNDLMELTEKMLSGM 127 (179)
Q Consensus 77 --~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~ 127 (179)
..-|.|++|+|||.|. .||+|+++|+.+. +..|++.++-+.++.+
T Consensus 92 ~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 92 STEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred CCCceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 2459999999999884 7999999999996 4667777777666554
No 67
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.6e-09 Score=90.09 Aligned_cols=50 Identities=28% Similarity=0.440 Sum_probs=45.8
Q ss_pred chheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
..|.|+|-+|||||..|++||+||+|+|.-+++. ++.+||.++++++..+
T Consensus 333 p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 333 PAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred cccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 3899999999999999999999999999999885 6999999999998643
No 68
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.75 E-value=2.4e-08 Score=82.19 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccccC-----CCceecccccc----ceeeeeechhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAA-----RPFVTHHNDLN----MKLYMRIAPELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~-----~~f~~~~~~~~----~~~~L~~S~ql~~~~~~ 74 (179)
.-.+++..|.+.+++-+.+.||.||.||.+.+.. .|... +.+.+ .+..+ ..++|+...+..+-.+.
T Consensus 30 ~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~-~~~~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 30 LAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVF-KDAGDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEE-EeCCCCccCceEEECCCCCHHHHHHH
Confidence 4467899999999999999999999999998732 22211 12222 12222 67889855554332222
Q ss_pred h-------ccchheeecccccccccCC-CC--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 75 V-------GGLDRVYEIGKQFRNEGID-LT--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 75 ~-------~~~~kvf~i~~~fR~E~~~-~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
+ .-.-|+|++++|||.|..+ .. +..||+|.|.+..+.+.++....++.++
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~ 168 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNML 168 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHH
Confidence 1 1246999999999999544 33 9999999999887677666666666666
No 69
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.73 E-value=2.3e-08 Score=90.31 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhh----
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELV---- 74 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~---- 74 (179)
..-++++.+|.+.+++.|.+.||.||.||.|.+.. +|. ..+.|.. .+..+++++|+...+-..-.++
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~-~d~~~~~l~LrPt~e~~~~~~~~~~~ 122 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRL-KDRHGRDFVLGPTHEEVITDLVRNEI 122 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEE-ecCCCCEEEECCCChHHHHHHHHhhh
Confidence 34578999999999999999999999999998741 221 1123432 2445678888854332221111
Q ss_pred -h--ccchheeecccccccc-cCCCC--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 75 -V--GGLDRVYEIGKQFRNE-GIDLT--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 75 -~--~~~~kvf~i~~~fR~E-~~~~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
+ .-.-|+|+|++|||.| +.... +..||+|.|.+..+.+-++.....++++
T Consensus 123 ~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~ 178 (565)
T PRK09194 123 KSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMY 178 (565)
T ss_pred hhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHH
Confidence 1 2246999999999999 55555 9999999999998865444333333333
No 70
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.71 E-value=2.3e-08 Score=81.79 Aligned_cols=98 Identities=24% Similarity=0.207 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHhhccCC--ceeeeccccccccccccCCCceec---cccccceeeeeechh----hhhhhhhh---
Q 030343 8 QIFKTRSKIVSYIRRFLDNLD--FLEVETPMMNMIAGGAAARPFVTH---HNDLNMKLYMRIAPE----LYLKELVV--- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~g--F~ev~tP~l~~~~~~~~~~~f~~~---~~~~~~~~~L~~S~q----l~~~~~~~--- 75 (179)
.-.++++.|.+.+|+.|...| |.||.||+|.+. ..|.+. .+..+..++|+.... ....+...
T Consensus 30 ~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 30 LGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 457899999999999999885 999999999874 223221 012345677773221 11122211
Q ss_pred -ccchheeecccccccccCCC---CCCCCcchhhHHHhhc
Q 030343 76 -GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFA 111 (179)
Q Consensus 76 -~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~ 111 (179)
.-.-++|+||+|||+|.+.. .+..||+|.|++.-..
T Consensus 104 ~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 23479999999999999765 7999999999998663
No 71
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.68 E-value=4.9e-08 Score=88.18 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhh----hh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKEL----VV 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~----~~ 75 (179)
.-.+++.+|.+.+|+.+.+.||.||.||.+.+.. +|. ..+.|.. .+..++.++|+...+-.+-.+ +.
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~-~dr~~~~l~LrPT~Ee~~t~~~~~~i~ 123 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRL-KDRKGREFVLGPTHEEVITDLARNEIK 123 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEE-ecCCCCEEEEcCCCcHHHHHHHHHHHh
Confidence 4578899999999999999999999999999741 221 1233443 244567888885422111111 11
Q ss_pred ---ccchheeecccccccc-cCCCC--CCCCcchhhHHHhhcchhHHHHHHHHHH---Hhhhhh
Q 030343 76 ---GGLDRVYEIGKQFRNE-GIDLT--HNPEFTTCEFYMAFADYNDLMELTEKML---SGMIKE 130 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E-~~~~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li---~~~~~~ 130 (179)
.-.-++|+|+++||.| +.... +..||+|.|.|..+.+..+.....+.++ ..+++.
T Consensus 124 syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~ 187 (568)
T TIGR00409 124 SYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSR 187 (568)
T ss_pred hccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHH
Confidence 2246999999999999 55555 9999999999998876555544444443 444444
No 72
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.67 E-value=3.7e-08 Score=80.83 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql~~~~~~ 74 (179)
.-.+++.+|.+.+++.+.+.||.||.||.|.+.. +|.. .+.|.+. +.. +..++|+...+-.+-.+.
T Consensus 30 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~-~~~~~~~~~~~~L~Pt~e~~~~~~~ 108 (261)
T cd00778 30 YGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVT-HGGLEELEEPLALRPTSETAIYPMF 108 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEE-ecCCcccCCcEEEcCCCCHHHHHHH
Confidence 4568899999999999999999999999998631 2221 1223321 111 236788765433322121
Q ss_pred h-------ccchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 75 V-------GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 75 ~-------~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
+ .-.-|+|++++|||+|..++ .+..||+|.|.+..+++.++..+..++++.
T Consensus 109 ~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~ 169 (261)
T cd00778 109 SKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD 169 (261)
T ss_pred HhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHH
Confidence 1 12579999999999999873 499999999998877776666666665553
No 73
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.65 E-value=3.7e-08 Score=89.97 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh--
Q 030343 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV-- 75 (179)
Q Consensus 6 ~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~-- 75 (179)
...-.+++..+.+.+++.|...||.||.||++.... +|+ ..+.|.+ .+..|+.+.|+....-..-++.+
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~r~~~~~ 344 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT-TESDGEEYALKPMNCPGHVQIYKQG 344 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee-ecCCCcEEEEecCCcHHHHHHHhCc
Confidence 345678899999999999999999999999998642 232 1223432 24456788887432222111221
Q ss_pred -----ccchheeecccccccccCCC----CCCCCcchhhHHHhhcc------hhHHHHHHHHHHH
Q 030343 76 -----GGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFAD------YNDLMELTEKMLS 125 (179)
Q Consensus 76 -----~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~------~~~lm~~~e~li~ 125 (179)
.-+-|.|++|+|||.|.++. .+..||+|+|+++.+.+ ..+++.++.++++
T Consensus 345 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~ 409 (638)
T PRK00413 345 LRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYK 409 (638)
T ss_pred CCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 12469999999999999863 48899999999985431 1345555555554
No 74
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=6.2e-08 Score=83.38 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=91.1
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc------cccccCCCceeccccccceeeeeechhhhhhhhhhc
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI------AGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG 76 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~------~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~ 76 (179)
++....-+.+|.++.+.+.+.|+..|...|+||++.-- .|+. ++......+..|+-.-||.--.....+.++.
T Consensus 67 rD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd-skLiYdlkDQGGEl~SLRYDLTVPfARylAm 145 (518)
T KOG1936|consen 67 RDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED-SKLIYDLKDQGGELCSLRYDLTVPFARYLAM 145 (518)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc-cceeEehhhcCCcEEEeecccccHHHHHHHH
Confidence 45566778999999999999999999999999998742 3443 4666555567777777775554445555443
Q ss_pred c---chheeecccccccccC--CCCCCCCcchhhHHHhhc-----chhHHHHHHHHHHH
Q 030343 77 G---LDRVYEIGKQFRNEGI--DLTHNPEFTTCEFYMAFA-----DYNDLMELTEKMLS 125 (179)
Q Consensus 77 ~---~~kvf~i~~~fR~E~~--~~~Hl~EF~~le~e~~~~-----~~~~lm~~~e~li~ 125 (179)
+ --+.|.|+++||-+.+ ...+..||+|+|+.+++. .-.|++..+-+++.
T Consensus 146 Nki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 146 NKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred cccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 3 2588999999999987 457999999999999982 25566666555553
No 75
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.59 E-value=9.2e-08 Score=82.35 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc------ccccC-CCceeccccccceeeeeechhhhhhhhhh----ccchhe
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAAA-RPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRV 81 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~~-~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kv 81 (179)
...+.+.+++.|..+||.||.||++.... ++... +.+. ..+..|+.+.||.-.....-+..+ ....|.
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~-f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFV-TSDENGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEE-EECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 34789999999999999999999998742 22111 2233 234457778888333333322221 334699
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhc-c----hhHHHHHHHHHHHhh
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFA-D----YNDLMELTEKMLSGM 127 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~-~----~~~lm~~~e~li~~~ 127 (179)
|++|+|||.+ ..+..||+|+++|+.+. + ..|++.++-+.++.+
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 9999999998 45789999999999884 3 448888877777543
No 76
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.58 E-value=1.3e-07 Score=84.99 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc---C-CCceeccccccceeeeeechhhhhhhhhh---
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA---A-RPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~---~-~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
-.-.++|..|.+.+|+.+.+.||.||.||.|... .+|+. . ..|.+ +..++.++|+.-.....-++.+
T Consensus 165 P~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~ 242 (545)
T PRK14799 165 PKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKP 242 (545)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccc
Confidence 3457899999999999999999999999998763 23321 1 22322 3346788888443333322222
Q ss_pred ----ccchheeecccccccccCCC----CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 76 ----GGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
.-+-|+|++|+|||.|.++. .+..||+|.|+.+ +++.+.+.+.+.+++.
T Consensus 243 ~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~ 299 (545)
T PRK14799 243 RTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLIS 299 (545)
T ss_pred cChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHH
Confidence 22469999999999999875 6999999999988 6665555455544443
No 77
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.58 E-value=1.4e-07 Score=78.74 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
.-.+++..|.+.+++.+.+.||.||.||.|.... +|. ..+.|.+ ...++.++|+.......-++.+
T Consensus 28 ~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~l~LRP~~~~~~~~~~~~~~~ 105 (298)
T cd00771 28 KGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF--EEEDEEYGLKPMNCPGHCLIFKSKPR 105 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe--ccCCceEEEcccCCHHHHHHHHhhcc
Confidence 4567899999999999999999999999998631 232 1123333 2234578887443322211221
Q ss_pred ---ccchheeecccccccccCCC----CCCCCcchhhHHHhhcc------hhHHHHHHHHHHHh
Q 030343 76 ---GGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFAD------YNDLMELTEKMLSG 126 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~------~~~lm~~~e~li~~ 126 (179)
.-.-|++++|+|||+|..+. .+..||+|.|+++.... ..++++++.++++.
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~ 169 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSD 169 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHH
Confidence 12469999999999998752 48899999999987432 22355555555543
No 78
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.58 E-value=1.7e-07 Score=84.74 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhh---
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
..-.++++.|.+.+++.|.+.||.||.||+|... .+|+. .+.|.+ .+..|+.+.|+....-..-++.+
T Consensus 203 p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~~~~~~~~ 281 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPP-MEIDEEEYYLKPMNCPGHILIYKSRL 281 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccc-cccCCceEEEecCCCHHHHHHHhccc
Confidence 3557889999999999999999999999999874 23321 123432 23356788888322222111111
Q ss_pred ----ccchheeecccccccccCCC----CCCCCcchhhHHHhh
Q 030343 76 ----GGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAF 110 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~ 110 (179)
.-+-|.|++|+|||+|.++. .+..||+|.|+++.+
T Consensus 282 ~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~ 324 (575)
T PRK12305 282 RSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFC 324 (575)
T ss_pred CChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEe
Confidence 12469999999999999852 488999999999744
No 79
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=98.53 E-value=2.3e-07 Score=83.61 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhhc--
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVVG-- 76 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~-- 76 (179)
..-.+++..|.+.+++.+...||.||.||++... .+|.. .+.|.. .+..|+.++|+.......-++.+.
T Consensus 197 p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~-~d~~~~~~~LrP~~~~~i~~~~~~~~ 275 (563)
T TIGR00418 197 PKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPF-TELDNREFMLKPMNCPGHFLIFKSSL 275 (563)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhccee-ccCCCceEEEecCCCHHHHHHHhCcC
Confidence 3456789999999999999999999999999864 23321 122322 233467889985544433222221
Q ss_pred -----cchheeecccccccccCCC----CCCCCcchhhHHHhhcc------hhHHHHHHHHHHH
Q 030343 77 -----GLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFAD------YNDLMELTEKMLS 125 (179)
Q Consensus 77 -----~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~------~~~lm~~~e~li~ 125 (179)
-+-|+|++|+|||.|..+. .++.||+|.|++..+.. +.++++++.++++
T Consensus 276 ~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~ 339 (563)
T TIGR00418 276 RSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 (563)
T ss_pred CChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 2469999999999996542 48999999999886541 3335555555554
No 80
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.53 E-value=2e-07 Score=85.29 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccccceeeeeechhhhhhhhhhc----
Q 030343 9 IFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVVG---- 76 (179)
Q Consensus 9 ~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~---- 76 (179)
-.+++..|.+.+++.+.+.||.||.||+|.+.. +|.. .+.|. .+..++.++|+..+....-++...
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 350 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYF--SEVDNKSFALKPMNCPGHMLMFKNKLHS 350 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCe--ecCCCcEEEEccCCCHHHHHHHhCcccC
Confidence 356788899999999999999999999998741 2321 12221 133456778885554444333221
Q ss_pred ---cchheeecccccccccCCC--C--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 77 ---GLDRVYEIGKQFRNEGIDL--T--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 77 ---~~~kvf~i~~~fR~E~~~~--~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
-+-|.|++|+|||.|.++. . +..||+|.|++ ++++-++....+++++
T Consensus 351 y~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~ 404 (639)
T PRK12444 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVM 404 (639)
T ss_pred hhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHH
Confidence 1469999999999999753 3 89999999998 4555444444433333
No 81
>PLN02908 threonyl-tRNA synthetase
Probab=98.52 E-value=2.3e-07 Score=85.62 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhh---
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
..-.++++.+.+.+|+.+.+.||.||.||.|.+. .+|+. ...|.+ +..+..++|+.......-.+.+
T Consensus 318 P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~ 395 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRV 395 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhccc
Confidence 3457899999999999999999999999999874 23321 122332 2345778887443332221211
Q ss_pred ----ccchheeecccccccccCC----CCCCCCcchhhHHHhhcchhHHHHHHHHHHHhh
Q 030343 76 ----GGLDRVYEIGKQFRNEGID----LTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~~----~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~ 127 (179)
.-+-|+|++|+|||+|.++ -.+..||+|.|.++ ++..+++.+.+++++..+
T Consensus 396 ~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~ 454 (686)
T PLN02908 396 RSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFL 454 (686)
T ss_pred cChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHH
Confidence 2256999999999999984 36999999999988 655566666665555433
No 82
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=98.44 E-value=8.7e-07 Score=78.52 Aligned_cols=118 Identities=20% Similarity=0.129 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql~~~~~~ 74 (179)
.-.+++..|.+.+++-+.+.||.||.||.|.+.. +++. .+.|.+. +.. +.+++|+...+-.+-.+.
T Consensus 36 ~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~-~~g~~~~~e~l~LrPt~e~~i~~~~ 114 (472)
T TIGR00408 36 YGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWIT-HGGLSKLDEPLALRPTSETAMYPMF 114 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEe-cCCCCccCCcEEEeCCCcHHHHHHH
Confidence 3467899999999999999999999999998631 2221 1233331 222 478899855544332111
Q ss_pred ----h---ccchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHHh
Q 030343 75 ----V---GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLSG 126 (179)
Q Consensus 75 ----~---~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~ 126 (179)
. .-.-|+|++++|||.|..++ .+..||+|.|.+..+++.++..+.++.++..
T Consensus 115 ~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~ 176 (472)
T TIGR00408 115 KKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDI 176 (472)
T ss_pred hccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHH
Confidence 1 12579999999999999864 4999999999998888877777766666643
No 83
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=98.40 E-value=6.9e-07 Score=78.47 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----cccc----cCCCceeccccccceeeeeech-hhhhh----hhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGA----AARPFVTHHNDLNMKLYMRIAP-ELYLK----ELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~----~~~~f~~~~~~~~~~~~L~~S~-ql~~~----~~~ 74 (179)
.-.+++..|.+.+++-+.+.||.||.||.|.+. ..|+ ..+.|.+ .+..+..++|+... ..+.. ...
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~-~d~~~~~~~L~Pt~e~~~~~~~~~~~~ 123 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI-KDRHDREMLYGPTNEEMITDIFRSYVK 123 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEE-ecCCCCEEEEcCCCcHHHHHHHHHHhh
Confidence 446899999999999999999999999999874 1222 1233432 23346778887433 22222 111
Q ss_pred h--ccchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 75 V--GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 75 ~--~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
+ .-.-|+|++|++||+|..+. .+..||+|-|.+....+.+++.+..++++
T Consensus 124 syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~ 178 (439)
T PRK12325 124 SYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMF 178 (439)
T ss_pred hchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHH
Confidence 1 23579999999999996442 39999999888776666555544444443
No 84
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=98.36 E-value=8.8e-07 Score=78.60 Aligned_cols=117 Identities=17% Similarity=0.034 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechh-----hh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPE-----LY 69 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~q-----l~ 69 (179)
.-.+++..|.+.+++.|.+.||.||.||.|.+.. +|+. .+.|.+. +.. +.+++|+..++ ++
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~-~~~~~~~~e~l~LrPtsE~~i~~~~ 120 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVT-HGGGEKLEEKLALRPTSETIIYPMY 120 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEE-ccCCCccCceEEEecCCcHHHHHHH
Confidence 4568899999999999999999999999998631 2321 1233331 112 46788985542 22
Q ss_pred hhhhhh--ccchheeecccccccccCCC--CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 70 LKELVV--GGLDRVYEIGKQFRNEGIDL--THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 70 ~~~~~~--~~~~kvf~i~~~fR~E~~~~--~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
...+.+ .-+-|+|++++|||.|.... .+..||+|.|.+..+++.++..+.++.++.
T Consensus 121 ~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 121 KKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 221111 22579999999999999833 499999999999888887777666666554
No 85
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=98.30 E-value=1.8e-06 Score=75.46 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
...+++.++.+.+++.+.+.||.||.||.|.+. .+|.. .+.|.+ -+...+|.-.++..+-.+.+
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i----~~~~~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL----EDTDLYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEe----cCCCEEEEeCCcHHHHHHHhCcCC
Confidence 457889999999999999999999999999874 23321 122322 14567888665554432222
Q ss_pred ---ccchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhHHHHHHHHHHHh
Q 030343 76 ---GGLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYNDLMELTEKMLSG 126 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~ 126 (179)
.-.-|++++|+|||+|... + -+..||+|.|. ..+++-++..+..++++..
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~ 306 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSD 306 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHH
Confidence 1257999999999999742 2 39999999999 4465555555555555543
No 86
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.27 E-value=2.4e-06 Score=70.68 Aligned_cols=100 Identities=8% Similarity=-0.016 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc--CCCceeccccccceeeeeechhhhhhhhhhc---
Q 030343 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA--ARPFVTHHNDLNMKLYMRIAPELYLKELVVG--- 76 (179)
Q Consensus 6 ~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~--~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~--- 76 (179)
++..+..+..+.+.+++.|.++||.+|.||++.... .+.. ...+....+..|+..-||.-.....-+..+.
T Consensus 3 ~~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 3 NSEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 456677888999999999999999999999997532 1111 1222221233578888885544444444432
Q ss_pred cchheeecccccccccCCCCCCCCcchhhHHHhhcc
Q 030343 77 GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD 112 (179)
Q Consensus 77 ~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~ 112 (179)
+..|.|++|+|||.++ +|+|+.+|..+.+
T Consensus 83 ~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~ 111 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-------AAVQVGIENYAPS 111 (272)
T ss_pred CCceEEEeccEeccCC-------CcceeceEEECCC
Confidence 4569999999999874 3899999998843
No 87
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.22 E-value=2.2e-06 Score=71.65 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----cccc----cCCCceeccccccceeeeeechhhhhhhhhhc---
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVVG--- 76 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~--- 76 (179)
...+++.+|.+.+++.+.+.||.||.||.|.+. .+|. ..+.|.+ .+..++|+-..+..+-.+++.
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v----~~~~~~L~pt~e~~~~~l~~~~~~ 125 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKV----EGEDLYLIATAEVPLAALHRDEIL 125 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEe----cCCCEEEeecCCHHHHHHHhcccC
Confidence 457899999999999999999999999999874 2332 1123333 136788886655554433322
Q ss_pred ----cchheeecccccccccCC-------CCCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 77 ----GLDRVYEIGKQFRNEGID-------LTHNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 77 ----~~~kvf~i~~~fR~E~~~-------~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
-.-|+|++|+|||+|... --+..||+|.|.+. ++.-++..+..++++.
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~ 184 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELIS 184 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHH
Confidence 257999999999999762 14899999999964 4433444444444443
No 88
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.15 E-value=4.3e-06 Score=73.23 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhccC--------Cceeeec--ccccc--------ccccccCCCceeccccccceeeee--echhhhhhhh
Q 030343 14 SKIVSYIRRFLDNL--------DFLEVET--PMMNM--------IAGGAAARPFVTHHNDLNMKLYMR--IAPELYLKEL 73 (179)
Q Consensus 14 s~i~~~ir~ff~~~--------gF~ev~t--P~l~~--------~~~~~~~~~f~~~~~~~~~~~~L~--~S~ql~~~~~ 73 (179)
+.+.+.|.++|.+. ||.-++. |+.+. .|.++.++.... ..|.+....|| +|+-.. ++
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~D-T~Yi~~~~lLRTHTSa~q~--~~ 121 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSD-CYYINEQHLLRAHTSAHEL--EC 121 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCccc-ceEecCCceeCCCCcHHHH--HH
Confidence 34667777888776 8977777 94332 145555665542 34667778887 565443 23
Q ss_pred hhccc-----hh--eeecccccccccCCCCCCCCcchhhH
Q 030343 74 VVGGL-----DR--VYEIGKQFRNEGIDLTHNPEFTTCEF 106 (179)
Q Consensus 74 ~~~~~-----~k--vf~i~~~fR~E~~~~~Hl~EF~~le~ 106 (179)
|..+. .+ +...|.|||.+..|++|.|.|+|+|.
T Consensus 122 ~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG 161 (460)
T TIGR00469 122 FQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADG 161 (460)
T ss_pred HHhccccCCCcceeeEeecceeeCCCCccccCccceeeEE
Confidence 33332 33 88999999999999999999999994
No 89
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=98.09 E-value=7.4e-06 Score=71.75 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHhhc-cCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhhc--
Q 030343 8 QIFKTRSKIVSYIRRFLD-NLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVVG-- 76 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~-~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~-- 76 (179)
...++..++.+.+++.+. +.||.||.||.|.+. .+|.. ...|.+ -+.+.||.-..+..+-.+++.
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i----~~~~~~L~pTsE~~l~~l~~~~~ 243 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI----EDDDLYLIPTAEVPLTNLHRDEI 243 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEe----cCCCEEEEeCCcHHHHHHHhccc
Confidence 456788999999988888 999999999999873 23321 122332 145788986665555433321
Q ss_pred -----cchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhHHHHHHHHHHHh
Q 030343 77 -----GLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYNDLMELTEKMLSG 126 (179)
Q Consensus 77 -----~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~ 126 (179)
-.-|++++++|||.|... + -+..||+|.|.. +++.-++..+..++++..
T Consensus 244 ~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~ 304 (425)
T PRK05431 244 LDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTAN 304 (425)
T ss_pred CCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHH
Confidence 257999999999999843 2 389999999997 455556666666655543
No 90
>PLN02837 threonine-tRNA ligase
Probab=98.06 E-value=1.1e-05 Score=73.79 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhh-----hhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELY-----LKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~-----~~~~~ 74 (179)
.-.+++.++.+.+++...++||.+|.||.|... .+|.- .+.|.+ .+.-+..+.|+.+..-. .....
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~-~~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQ-MDIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccc-cCCCCceEEECCCCcHHHHHHHhCccC
Confidence 457889999999999999999999999999874 23321 122322 11123445666444332 11111
Q ss_pred --hccchheeecccccccccCCC----CCCCCcchhhHHHhhcchhHHHHHHHHHHHh
Q 030343 75 --VGGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFADYNDLMELTEKMLSG 126 (179)
Q Consensus 75 --~~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~ 126 (179)
..-+-+++++|+|||+|.++. -+..||+|.|... |+..++..+.+++++..
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~ 380 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDL 380 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHH
Confidence 123579999999999999752 4899999999986 77666666666666643
No 91
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.98 E-value=1.7e-05 Score=72.45 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc---c-ccc----cCCCceeccccccceeeeeechhhhhhhh-----h
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI---A-GGA----AARPFVTHHNDLNMKLYMRIAPELYLKEL-----V 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~---~-~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~-----~ 74 (179)
.-.+++..|.+.+++.+.+.||.+|.||.+... . .|+ ..+.|.+. .-+..++|+.......-.. .
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~--~~~e~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVK--SDKKDLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEec--CCCceEEEecCCCHHHHHHHhCCcC
Confidence 457899999999999999999999999998432 1 111 12334331 1246788874443222111 1
Q ss_pred h--ccchheeeccc-ccccccCCC----CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhh
Q 030343 75 V--GGLDRVYEIGK-QFRNEGIDL----THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 75 ~--~~~~kvf~i~~-~fR~E~~~~----~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~ 129 (179)
+ .-.-|+|++|+ |||+|.++. .++.||+|.|......+.++.++..++++..+..
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILE 364 (613)
T ss_pred chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 1 22578999999 999998753 4999999999977544567777766666654333
No 92
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=97.95 E-value=3.4e-05 Score=66.62 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=86.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc----cc-ccc--CCCceeccccccceeeeeechhhhhhhh---
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AG-GAA--ARPFVTHHNDLNMKLYMRIAPELYLKEL--- 73 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~-~~~--~~~f~~~~~~~~~~~~L~~S~ql~~~~~--- 73 (179)
+.+..-.+....|.+.+++.|..+||..|+||+|+.. .+ |.. .+.|++ .+..|+...||.--....-+.
T Consensus 11 d~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l-~d~~g~~l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 11 DVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKL-EDETGGRLGLRPDFTIPVARIHAT 89 (390)
T ss_pred hcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEE-ecCCCCeEEecccccHHHHHHHHH
Confidence 3444566778899999999999999999999999974 22 322 466775 455667799984433333222
Q ss_pred -hhccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHH
Q 030343 74 -VVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLS 125 (179)
Q Consensus 74 -~~~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~ 125 (179)
+.....|.++.|+|||..+...+...||+|..+|.-+.+ -.|++.++-..++
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~ 146 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALK 146 (390)
T ss_pred hcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHH
Confidence 334578999999999999555578889999999998852 4455555444444
No 93
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=3.4e-05 Score=68.66 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
.-++++.+|.+.+|+-|++-|-.||.-|.|.++. .|. +.+.|.+ .+..++++.|+..++--.--++.
T Consensus 45 ~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v-~drg~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 45 LGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV-KDRGDRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred cHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEE-EccCCceeeeCCCcHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999852 221 1233433 35568899998554432221221
Q ss_pred ---ccchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 76 ---GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
.-.-++|||+.+||.|...+ -+..||+|=|.+-.++|.+++....+.++.
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 23579999999999998643 599999999999999999998888887774
No 94
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.85 E-value=8.3e-06 Score=71.59 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=47.0
Q ss_pred ccchheeeccccccccc-CCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 76 GGLDRVYEIGKQFRNEG-IDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 76 ~~~~kvf~i~~~fR~E~-~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
...-|+|++|+|||+|. .|++|+++|+|+|+-+++. ++.|++.+++.+++.+
T Consensus 205 ~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 205 KLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35689999999999996 6899999999999988884 6999999999999887
No 95
>PLN02678 seryl-tRNA synthetase
Probab=97.71 E-value=5.8e-05 Score=66.46 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeech-----hhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAP-----ELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~-----ql~~~~~~ 74 (179)
...+++.++++.++++..++||+||.||.|... .+|.. ...|.+. ..+...||.-.+ -+|....+
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~--~~~~~~yLi~TaE~~l~~~h~~~~~ 249 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVT--GEGDDKYLIATSEQPLCAYHRGDWI 249 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceec--CCCCceeeecccccccChHHhcccC
Confidence 457889999999999999999999999999863 23321 1222221 012345554321 12221112
Q ss_pred --hccchheeecccccccccC----CC---CCCCCcchhhHHHhhcchhH--HHHHHHHHH
Q 030343 75 --VGGLDRVYEIGKQFRNEGI----DL---THNPEFTTCEFYMAFADYND--LMELTEKML 124 (179)
Q Consensus 75 --~~~~~kvf~i~~~fR~E~~----~~---~Hl~EF~~le~e~~~~~~~~--lm~~~e~li 124 (179)
..-.-|.+.+++|||+|.. ++ .+..+|+++|... ++.-++ .....|+++
T Consensus 250 s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l 309 (448)
T PLN02678 250 DPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEML 309 (448)
T ss_pred CHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHH
Confidence 1235799999999999986 22 4899999999833 333333 444444444
No 96
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.66 E-value=8.8e-05 Score=65.58 Aligned_cols=50 Identities=24% Similarity=0.130 Sum_probs=37.3
Q ss_pred chheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhh
Q 030343 78 LDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLSGMI 128 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~ 128 (179)
+-++.++|+|||+|.+.. .+..||+|.|.. .|++.+++.+.+..++..+.
T Consensus 186 Plr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~ 238 (456)
T PRK04173 186 PFGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRK 238 (456)
T ss_pred CeeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHH
Confidence 579999999999998753 367999999997 57776666555555554333
No 97
>PLN02320 seryl-tRNA synthetase
Probab=97.64 E-value=9.7e-05 Score=65.77 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeccccccc----cccccC--CCceeccccccceeeeeechh-----hhhhhhhh--c
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAAA--RPFVTHHNDLNMKLYMRIAPE-----LYLKELVV--G 76 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~~--~~f~~~~~~~~~~~~L~~S~q-----l~~~~~~~--~ 76 (179)
.++..++++.+++...++||.||.||.|... .+|... +....+ ..-+...||.-..+ +|....+. .
T Consensus 233 a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y-~ie~ed~~Li~TaE~Pl~~~~~~~ils~~d 311 (502)
T PLN02320 233 VLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVY-SIDGSDQCLIGTAEIPVGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCcee-EECCCceEEeecccccccccccccccCHhh
Confidence 4466788888888889999999999999863 233211 010100 11245677742222 23322221 2
Q ss_pred cchheeecccccccccC--C--C---CCCCCcchhhHHHhhcchhHHHHHHHHHHHhh
Q 030343 77 GLDRVYEIGKQFRNEGI--D--L---THNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 77 ~~~kvf~i~~~fR~E~~--~--~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~ 127 (179)
-.-|...+|+|||.|.. + + -+..+|+++|.-+ ++..++..+..++++..+
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~ 368 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIE 368 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHH
Confidence 25799999999999976 2 2 3899999999843 555555555555555433
No 98
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00061 Score=61.85 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccccceeeeee--ch---hhhhhhhhh-
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLNMKLYMRI--AP---ELYLKELVV- 75 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~~~~~L~~--S~---ql~~~~~~~- 75 (179)
..+|+.+.+.+|.-..+.||.||.||.+.... .|+- .+.|.+. .-++.+.|+. .| +.++...-+
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~--~~~~~~~lKpmNCpgh~~ifk~~~~SY 297 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTE--SDDREYALKPMNCPGHILIFKSGLRSY 297 (589)
T ss_pred ccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeec--cCChhheeeeccCHhHHHHHhcCCcce
Confidence 46899999999999999999999999997532 2221 0111110 0112233331 11 122221111
Q ss_pred -ccchheeecccccccccCCC----CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhh
Q 030343 76 -GGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 76 -~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~ 129 (179)
.-.-|++++|.|+|.|.++. +++..|||=|.-+ ++..+.+.+.+.+.+..+..
T Consensus 298 R~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~ 355 (589)
T COG0441 298 RELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILE 355 (589)
T ss_pred eccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHH
Confidence 12469999999999999874 5889999999855 55666666666666655544
No 99
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0015 Score=55.81 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----cc----ccCCCceeccccccceeeeeechhhhhhhhhhc---
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GG----AAARPFVTHHNDLNMKLYMRIAPELYLKELVVG--- 76 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~----~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~--- 76 (179)
--+|+-+++.+.++.-|..-|=.+|.-|+|++.. .| .+++.|.. .+..|+.++|+..-+=-.-.+|+.
T Consensus 50 lg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl-~Dr~gkq~cL~pThEE~iT~lmat~~~ 128 (457)
T KOG2324|consen 50 LGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL-HDRKGKQMCLTPTHEEDITALMATYIP 128 (457)
T ss_pred chHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe-eccCCCEeccCCchHHHHHHHHHhcCc
Confidence 3468889999999999999999999999998741 11 23455654 567788888875443322223331
Q ss_pred -----cchheeecccccccccCCC---CCCCCcchhhHHHhhcchhHHHHH
Q 030343 77 -----GLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMEL 119 (179)
Q Consensus 77 -----~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~ 119 (179)
-.-++|+||+=||+|-..+ -+-.||.|-|.|--..+-++.|+.
T Consensus 129 lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qT 179 (457)
T KOG2324|consen 129 LSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQT 179 (457)
T ss_pred cccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHH
Confidence 1468999999999998532 588999999998866565555553
No 100
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0017 Score=56.74 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhccCCceeeecccccccc---ccccCCCceecccc-ccceeeeeechhhhhhhh-----hh--cc
Q 030343 9 IFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA---GGAAARPFVTHHND-LNMKLYMRIAPELYLKEL-----VV--GG 77 (179)
Q Consensus 9 ~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~---~~~~~~~f~~~~~~-~~~~~~L~~S~ql~~~~~-----~~--~~ 77 (179)
+.++-.++.+.+-++..++||.|+.+|.|.... |.+-..-|.-...+ -+.++||....+..+--+ +. ..
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~L 252 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDL 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccccC
Confidence 345556677777777789999999999998632 22211112210000 123678876655544322 22 13
Q ss_pred chheeecccccccccCC----C---CCCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 78 LDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
..+.+-.+||||.|... + .+..+|..+|.-. ++..++.....|+|+
T Consensus 253 P~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~ 305 (429)
T COG0172 253 PIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEML 305 (429)
T ss_pred CeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHH
Confidence 57888899999999743 3 4888999998732 334444444444444
No 101
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=97.07 E-value=0.0015 Score=58.35 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhh-ccCCceeeecccccccc----ccccCCCc-----eecc-----------------------cc
Q 030343 9 IFKTRSKIVSYIRRFL-DNLDFLEVETPMMNMIA----GGAAARPF-----VTHH-----------------------ND 55 (179)
Q Consensus 9 ~~~~rs~i~~~ir~ff-~~~gF~ev~tP~l~~~~----~~~~~~~f-----~~~~-----------------------~~ 55 (179)
..+++..+.+.+.+.. .+.||.|+.+|.|.+.. +|. ...| .+.. ..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~gh-l~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRY-LEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCC-CCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 4567777888886544 55699999999998741 221 1112 1100 00
Q ss_pred -----ccceeeeeechhhhhhhhhh------cc-chheeecc-cccccccCCC---CCCCCcchhhHHHhhcchhHHHHH
Q 030343 56 -----LNMKLYMRIAPELYLKELVV------GG-LDRVYEIG-KQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMEL 119 (179)
Q Consensus 56 -----~~~~~~L~~S~ql~~~~~~~------~~-~~kvf~i~-~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~ 119 (179)
-+.+++|+.+++..+-.+++ .. ..++++++ +|||.|..++ .++.||+|.|.-. .++.++..+.
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~ 379 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEI 379 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHH
Confidence 11256687666655532222 11 36788855 7999999543 5999999999977 6677777777
Q ss_pred HHHHHHhh
Q 030343 120 TEKMLSGM 127 (179)
Q Consensus 120 ~e~li~~~ 127 (179)
.++++...
T Consensus 380 ~e~mle~~ 387 (520)
T TIGR00415 380 RDKTLELA 387 (520)
T ss_pred HHHHHHHH
Confidence 77777543
No 102
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=97.07 E-value=0.00065 Score=60.85 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHh-hccCCceeeecccccccc----cccc----CCCceecccc-----c-----------------
Q 030343 8 QIFKTRSKIVSYIRRF-LDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHND-----L----------------- 56 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~f-f~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~-----~----------------- 56 (179)
...+++..+.+.+++. +.+.||.||.+|.|.+.. +|.- ...|.+.... +
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 3467788888888876 566799999999998731 2210 1112221000 0
Q ss_pred ------cceeeeeechh--hh---hhhhhh-cc-chheee-cccccccccCCC---CCCCCcchhhHHHhhcchhHHHHH
Q 030343 57 ------NMKLYMRIAPE--LY---LKELVV-GG-LDRVYE-IGKQFRNEGIDL---THNPEFTTCEFYMAFADYNDLMEL 119 (179)
Q Consensus 57 ------~~~~~L~~S~q--l~---~~~~~~-~~-~~kvf~-i~~~fR~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~ 119 (179)
+..+.|+.+.- .| ....+. .+ .-|+++ .|+|||.|.... .+..||+|.|.- .+++.+++.+.
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee 379 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEI 379 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHH
Confidence 01112222211 11 111111 11 358899 569999996322 599999999997 57778888888
Q ss_pred HHHHHHh
Q 030343 120 TEKMLSG 126 (179)
Q Consensus 120 ~e~li~~ 126 (179)
.++++.+
T Consensus 380 ~e~ll~~ 386 (517)
T PRK00960 380 RDELLKY 386 (517)
T ss_pred HHHHHHH
Confidence 8888743
No 103
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=97.06 E-value=0.00094 Score=60.43 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccccc--c---ccC--CCceeccccccceeeeeechhhhhhhhhhcc-----chh
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIAG--G---AAA--RPFVTHHNDLNMKLYMRIAPELYLKELVVGG-----LDR 80 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~--~---~~~--~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~-----~~k 80 (179)
...+.+.+|++|...||.|+-|..+++... . -.. ..+......-..-.+||+|----+-..++.+ --+
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~ 440 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQK 440 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCee
Confidence 456678899999999999999999986421 1 001 1222221222344577766332222222211 258
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHh
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSG 126 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~ 126 (179)
+|+||+||+.+..+..|..|++++.+-+++. ++.++...++.++..
T Consensus 441 lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 441 IFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred EEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999998765556888999998877773 799999999999864
No 104
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0014 Score=58.27 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcc--CCceeeecccccc
Q 030343 10 FKTRSKIVSYIRRFLDN--LDFLEVETPMMNM 39 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~--~gF~ev~tP~l~~ 39 (179)
..+++.|.++-|++|.. .|++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 35788999999999976 4899999999986
No 105
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0025 Score=61.56 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhccCCceeeecccccc-ccc-cccCCCceeccccccceeeeeechhhhhhhhhhcc---chheeec
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNM-IAG-GAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGG---LDRVYEI 84 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~-~~~-~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~---~~kvf~i 84 (179)
-.+|..+...+.+.|++.|++|++||-+.. +++ -...++..+ .+..|..+-|..---+..-+.++.+ .-|.|+|
T Consensus 932 ~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~-ld~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry~i 1010 (1351)
T KOG1035|consen 932 NELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVEL-LDHSGDVVELPYDLRLPFARYVSRNSVLSFKRYCI 1010 (1351)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeee-ecCCCCEEEeeccccchHHHHhhhchHHHHHHhhh
Confidence 357888999999999999999999996654 221 112333433 2344444444433222223333322 3689999
Q ss_pred ccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhhhh
Q 030343 85 GKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGMIK 129 (179)
Q Consensus 85 ~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~~~ 129 (179)
++|||-+. .. |-.|++.+++.+.+-+ -.|++.++-+++..++.
T Consensus 1011 ~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~ 1057 (1351)
T KOG1035|consen 1011 SRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILH 1057 (1351)
T ss_pred heeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 99999988 44 9999999999998843 67888888888876444
No 106
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=96.55 E-value=0.0035 Score=56.63 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhc-cCCceeeecccccc
Q 030343 10 FKTRSKIVSYIRRFLD-NLDFLEVETPMMNM 39 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~-~~gF~ev~tP~l~~ 39 (179)
..+++.|.+..|+.|. ..|+.||++|+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 5688999999999994 77899999999987
No 107
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=95.97 E-value=0.0075 Score=47.29 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhccCCceeeecccccccc-cc----ccCCCceeccccccceeeeeech--hhhhhhh--hhc--cchhee
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIA-GG----AAARPFVTHHNDLNMKLYMRIAP--ELYLKEL--VVG--GLDRVY 82 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~-~~----~~~~~f~~~~~~~~~~~~L~~S~--ql~~~~~--~~~--~~~kvf 82 (179)
..+.+.+|+++...||.|+-|..+++.. .. ....+.++....-..-.+||+|- .+..-.. ... ..-++|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lF 82 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLF 82 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEE
Confidence 3567789999999999999999998641 10 11112222111112233555552 3322211 111 246999
Q ss_pred ecccccccccCCCCCCCCcchhhHHHhh-------------cchhHHHHHHHHHHHh
Q 030343 83 EIGKQFRNEGIDLTHNPEFTTCEFYMAF-------------ADYNDLMELTEKMLSG 126 (179)
Q Consensus 83 ~i~~~fR~E~~~~~Hl~EF~~le~e~~~-------------~~~~~lm~~~e~li~~ 126 (179)
+||+||..+.. +..|.+.+-+-+++ .++.|+...++.++..
T Consensus 83 EiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~ 136 (198)
T cd00769 83 EIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRA 136 (198)
T ss_pred EeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHH
Confidence 99999976431 22233333222222 2677788888888864
No 108
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.023 Score=49.56 Aligned_cols=117 Identities=14% Similarity=0.194 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----cccccC----CCceeccccccceeeeeechhhhhhhh-----h
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAAA----RPFVTHHNDLNMKLYMRIAPELYLKEL-----V 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~~----~~f~~~~~~~~~~~~L~~S~ql~~~~~-----~ 74 (179)
....+..++++..-+|+.++||+-+.||.|... .||-.. ...++ .+ .+.+.||.-.++..+-.+ +
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~-ld-~~~~~~LiaTaE~plAa~~~~e~~ 260 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYV-LD-GGDEKYLIATAEQPLAAYHRDEWL 260 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEe-ec-CCccceeEeeccchhhhhhccccc
Confidence 345677889999999999999999999999863 243211 11221 11 223457764444444311 1
Q ss_pred hc--cchheeeccccccccc-C---CCC---CCCCcchhhHHH------hhcchhHHHHHHHHHHHh
Q 030343 75 VG--GLDRVYEIGKQFRNEG-I---DLT---HNPEFTTCEFYM------AFADYNDLMELTEKMLSG 126 (179)
Q Consensus 75 ~~--~~~kvf~i~~~fR~E~-~---~~~---Hl~EF~~le~e~------~~~~~~~lm~~~e~li~~ 126 (179)
.. -.-|+-..+.|||.|- + +++ +..+|+.+|--+ +..-++++++..+++++.
T Consensus 261 ~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qs 327 (455)
T KOG2509|consen 261 EEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQS 327 (455)
T ss_pred ccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHH
Confidence 11 1367888999999997 2 232 778898888622 112267777777777753
No 109
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=95.48 E-value=0.028 Score=50.27 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhc--cCCceeeeccccccc----ccccc------------------------------C------C
Q 030343 10 FKTRSKIVSYIRRFLD--NLDFLEVETPMMNMI----AGGAA------------------------------A------R 47 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~--~~gF~ev~tP~l~~~----~~~~~------------------------------~------~ 47 (179)
..+++.|.+.-+++|. ..+..+|++|+|.+. +.|+- + +
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~ 119 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPR 119 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCcce
Confidence 3567888888888884 557789999998752 11110 0 0
Q ss_pred C----ceecc-ccc--cceeeeee--c--hhhhhhhhhh----ccchheeecccccccccCCC---CCCCCcchhhHHHh
Q 030343 48 P----FVTHH-NDL--NMKLYMRI--A--PELYLKELVV----GGLDRVYEIGKQFRNEGIDL---THNPEFTTCEFYMA 109 (179)
Q Consensus 48 ~----f~~~~-~~~--~~~~~L~~--S--~ql~~~~~~~----~~~~kvf~i~~~fR~E~~~~---~Hl~EF~~le~e~~ 109 (179)
+ |++.. ... +...|||. + --+..+.++. .-...+-+||++||||-+.+ -++.||+|.|+|.-
T Consensus 120 ~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F 199 (539)
T PRK14894 120 PFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYF 199 (539)
T ss_pred eccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEE
Confidence 1 11110 001 13578882 2 2222233322 11367899999999996432 49999999999873
No 110
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.084 Score=46.67 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceecc--cccc-ce-----eeee--echhhhhh
Q 030343 10 FKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHH--NDLN-MK-----LYMR--IAPELYLK 71 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~--~~~~-~~-----~~L~--~S~ql~~~ 71 (179)
-++.+.++..||.=+..+||.||-||.|-.+ ..|+. .+.|.+.. +.++ ++ -+|. .-+--|.+
T Consensus 192 ~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~re 271 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRE 271 (560)
T ss_pred chHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhh
Confidence 3688999999999999999999999998653 23321 12333211 1111 00 0111 11112222
Q ss_pred hhhhccchheeecccccccccCCC----CCCCCcchhhHHHhhcc---hhHHHHHHHHHHHhhhhhhhc
Q 030343 72 ELVVGGLDRVYEIGKQFRNEGIDL----THNPEFTTCEFYMAFAD---YNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 72 ~~~~~~~~kvf~i~~~fR~E~~~~----~Hl~EF~~le~e~~~~~---~~~lm~~~e~li~~~~~~~~~ 133 (179)
-.-|.=.+|+.-|||-+++ +|+..|.|=|.-+ |++ ..+-+.-+-++++++.. +.+
T Consensus 272 -----LPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~-~fg 333 (560)
T KOG1637|consen 272 -----LPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYG-VFG 333 (560)
T ss_pred -----CCccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHH-hcc
Confidence 1346667899999999864 7999999998855 554 44444444455666665 444
No 111
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=92.80 E-value=0.2 Score=40.54 Aligned_cols=120 Identities=14% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhc-----cCCceeeecccccccccc------ccCCCceeccccc-cceeeeeechhhhhhhhhh-ccc--
Q 030343 14 SKIVSYIRRFLD-----NLDFLEVETPMMNMIAGG------AAARPFVTHHNDL-NMKLYMRIAPELYLKELVV-GGL-- 78 (179)
Q Consensus 14 s~i~~~ir~ff~-----~~gF~ev~tP~l~~~~~~------~~~~~f~~~~~~~-~~~~~L~~S~ql~~~~~~~-~~~-- 78 (179)
...+..|.++|. +.+.+.|..|.+.....| +..++........ +..+-.-+|-.-++.+++. .++
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 455666666664 459999999999875322 1234443222222 4556666888888776654 233
Q ss_pred -hheeecccccc-ccc-CCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 79 -DRVYEIGKQFR-NEG-IDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 79 -~kvf~i~~~fR-~E~-~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
+.+|+=..+.| .|. .+..|..=.-|.|||.+-..-+..+..+.+.++.+...+.+
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHH
Confidence 68999999999 775 68999999999999998865555566666666666666554
No 112
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=92.50 E-value=0.15 Score=46.25 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc-c-cc---cC-CCceeccccccceeeeeechhhhhhhhhhcc-----chhe
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA-G-GA---AA-RPFVTHHNDLNMKLYMRIAPELYLKELVVGG-----LDRV 81 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-~-~~---~~-~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~-----~~kv 81 (179)
.....+.+|+++...||.|+-|-.+++.. . .. .. .........-..--+||+|----+-..++.+ --++
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 45677889999999999999999998741 1 10 00 1111111111223466655322221222222 2489
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHh
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSG 126 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~ 126 (179)
|+||+||...+.+..+..++.++-+-+++ .++.|+...++.++..
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999996533211233344556555544 3788999999988864
No 113
>PTZ00213 asparagine synthetase A; Provisional
Probab=91.45 E-value=1.2 Score=37.85 Aligned_cols=125 Identities=13% Similarity=0.229 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCceeeeccccccccccc------cCCCceecccc-ccceeeeeechhhhhhhhhh-
Q 030343 9 IFKTRSKIVSYIRRFLDN-----LDFLEVETPMMNMIAGGA------AARPFVTHHND-LNMKLYMRIAPELYLKELVV- 75 (179)
Q Consensus 9 ~~~~rs~i~~~ir~ff~~-----~gF~ev~tP~l~~~~~~~------~~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~- 75 (179)
.++.....+..+.++|.. .+.+.|..|.+.....|- ..++....... .+..+-..+|-.-++.+++.
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 86 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGE 86 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHh
Confidence 344455566667777754 499999999998643221 12343322222 24555566787778776654
Q ss_pred ccc---hheeecccccccc-cCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 76 GGL---DRVYEIGKQFRNE-GIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 76 ~~~---~kvf~i~~~fR~E-~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
.++ +.+|+=.++.|.+ ..|..|..=--|.|||.+-..-+..++.+.+.++.+++.+..
T Consensus 87 y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~ 148 (348)
T PTZ00213 87 HKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRK 148 (348)
T ss_pred cCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 233 6789988888875 468899999999999998865555555555555555555443
No 114
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=90.78 E-value=1.1 Score=37.53 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=71.6
Q ss_pred cCCceeeecccccccccc------ccCCCceecccc-ccceeeeeechhhhhhhhhhc-cc---hheeeccccccc-ccC
Q 030343 26 NLDFLEVETPMMNMIAGG------AAARPFVTHHND-LNMKLYMRIAPELYLKELVVG-GL---DRVYEIGKQFRN-EGI 93 (179)
Q Consensus 26 ~~gF~ev~tP~l~~~~~~------~~~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~~-~~---~kvf~i~~~fR~-E~~ 93 (179)
+.+.+.|..|.+.....| +..++....... .+..+-.-+|-.-++.+++.. ++ +.+|+=..+.|. |..
T Consensus 18 ~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l 97 (309)
T cd00645 18 ELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL 97 (309)
T ss_pred HhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc
Confidence 459999999999864333 123444322222 245555667888887766542 33 678998888887 557
Q ss_pred CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 94 DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 94 ~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
|..|..=--|.|||.+-..-+..++.+.+.++.++..+..
T Consensus 98 dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~ 137 (309)
T cd00645 98 DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKE 137 (309)
T ss_pred CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998865445555555555555555443
No 115
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=90.22 E-value=1.7 Score=36.79 Aligned_cols=124 Identities=10% Similarity=0.248 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhcc-----CCceeeecccccccccc------ccCCCceecccc-ccceeeeeechhhhhhhhhh-c
Q 030343 10 FKTRSKIVSYIRRFLDN-----LDFLEVETPMMNMIAGG------AAARPFVTHHND-LNMKLYMRIAPELYLKELVV-G 76 (179)
Q Consensus 10 ~~~rs~i~~~ir~ff~~-----~gF~ev~tP~l~~~~~~------~~~~~f~~~~~~-~~~~~~L~~S~ql~~~~~~~-~ 76 (179)
++.....+..+.++|.. .+.+.|..|.+.....| +..+|....... .+..+-.-+|-.-++.+++. .
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 84 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARH 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 44455556666666644 48999999999864322 123444322222 24556666888888776654 2
Q ss_pred cc---hheeecccccccc-c-CCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 77 GL---DRVYEIGKQFRNE-G-IDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 77 ~~---~kvf~i~~~fR~E-~-~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
++ +.+|+=.++.|.+ . .|..|..=--|.|||.+-..-+..++.+.+.++.+++.+..
T Consensus 85 ~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~ 146 (330)
T TIGR00669 85 DFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRA 146 (330)
T ss_pred CCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHH
Confidence 33 5789988999885 4 48899999999999998865555555555555555555443
No 116
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=90.05 E-value=1.9 Score=36.58 Aligned_cols=122 Identities=15% Similarity=0.321 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhc-----cCCceeeecccccccccc------ccCCCceeccccc-cceeeeeechhhhhhhhhh-ccc
Q 030343 12 TRSKIVSYIRRFLD-----NLDFLEVETPMMNMIAGG------AAARPFVTHHNDL-NMKLYMRIAPELYLKELVV-GGL 78 (179)
Q Consensus 12 ~rs~i~~~ir~ff~-----~~gF~ev~tP~l~~~~~~------~~~~~f~~~~~~~-~~~~~L~~S~ql~~~~~~~-~~~ 78 (179)
-....+..+.++|. +.+.+.|..|.+.....| +..+|........ +..+-..+|-.-++.+++. .++
T Consensus 10 ~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f 89 (327)
T PRK05425 10 ETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGF 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCC
Confidence 33444555555553 359999999999864322 1134433222222 3455567888888876664 233
Q ss_pred ---hheeeccccccc-ccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhc
Q 030343 79 ---DRVYEIGKQFRN-EGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITG 133 (179)
Q Consensus 79 ---~kvf~i~~~fR~-E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~ 133 (179)
+.+|+=..+.|. |..|..|..=--|.|||.+-..-+..++.+.+.++.++..+..
T Consensus 90 ~~geGlytdMnAiR~dE~ld~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~ 148 (327)
T PRK05425 90 SAGEGLYTDMNAIRPDEDLDNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKA 148 (327)
T ss_pred CCCceeccCCccccCCcccCcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHH
Confidence 578998888887 5578999999999999998865555555555556555555543
No 117
>PLN02734 glycyl-tRNA synthetase
Probab=89.22 E-value=0.15 Score=47.37 Aligned_cols=31 Identities=32% Similarity=0.256 Sum_probs=26.2
Q ss_pred chheeecccccccccCC-C--CCCCCcchhhHHH
Q 030343 78 LDRVYEIGKQFRNEGID-L--THNPEFTTCEFYM 108 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~~-~--~Hl~EF~~le~e~ 108 (179)
...+-|||++||||=+. . -++.||+|.|+|.
T Consensus 275 PF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~ 308 (684)
T PLN02734 275 PFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH 308 (684)
T ss_pred CeeeeeccHhhhcccCcccceeeechhhhhhhhe
Confidence 36789999999999543 2 5999999999987
No 118
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=88.13 E-value=0.55 Score=43.10 Aligned_cols=114 Identities=8% Similarity=-0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccccc-----c-ccC--CCceeccccccceeeeeechhhhhhhhhhcc-----ch
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIAG-----G-AAA--RPFVTHHNDLNMKLYMRIAPELYLKELVVGG-----LD 79 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~-----~-~~~--~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~-----~~ 79 (179)
.+.+.+.+|+.+...||.|+-|-.|++... + ... ....+....-..--.||+|----+=..++.+ .-
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~ 478 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCe
Confidence 467778899999999999999999986411 0 000 1122111111122355555322221122222 35
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHh
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSG 126 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~ 126 (179)
|+|+||.||-.+.....-..|-.++-+-.++ +++.++..+++.++..
T Consensus 479 klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~ 527 (597)
T PLN02265 479 KLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEV 527 (597)
T ss_pred eEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHH
Confidence 8999999995432211111233344333333 3688888888888864
No 119
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=87.84 E-value=2.2 Score=35.19 Aligned_cols=115 Identities=13% Similarity=0.222 Sum_probs=70.6
Q ss_pred HHHHHhhc-cCCceeeecccccccccc------ccCCCceeccccccce-eeeeechhhhhhhhhh-cc---chheeecc
Q 030343 18 SYIRRFLD-NLDFLEVETPMMNMIAGG------AAARPFVTHHNDLNMK-LYMRIAPELYLKELVV-GG---LDRVYEIG 85 (179)
Q Consensus 18 ~~ir~ff~-~~gF~ev~tP~l~~~~~~------~~~~~f~~~~~~~~~~-~~L~~S~ql~~~~~~~-~~---~~kvf~i~ 85 (179)
..+...|. ..|.+||..|+++....| +..++.++........ +-.-.|-.-++...++ .+ -+.+|.=.
T Consensus 17 n~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM 96 (330)
T COG2502 17 NTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHM 96 (330)
T ss_pred HHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceeeec
Confidence 33344443 359999999999864322 1234444322222111 2233566666665544 23 37889999
Q ss_pred cccccccC--CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhh
Q 030343 86 KQFRNEGI--DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEIT 132 (179)
Q Consensus 86 ~~fR~E~~--~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~ 132 (179)
++.|.++. +..|.-=--|.|||.+-.+-+..+..+.+.++.+...+.
T Consensus 97 ~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir 145 (330)
T COG2502 97 KALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIR 145 (330)
T ss_pred hhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHH
Confidence 99999664 678999999999999876555555555666665555544
No 120
>PRK07080 hypothetical protein; Validated
Probab=85.02 E-value=0.35 Score=40.83 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.2
Q ss_pred hheeec-ccccccccC-CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhh
Q 030343 79 DRVYEI-GKQFRNEGI-DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 79 ~kvf~i-~~~fR~E~~-~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~ 127 (179)
+++|.+ |.|||+|++ +..++-||+|-|+-..+ +-+.+.+.-+..+...
T Consensus 152 g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 152 GRLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERG 201 (317)
T ss_pred CcEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHH
Confidence 466665 779999996 45799999999998777 5556666655555443
No 121
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=82.70 E-value=2.4 Score=39.37 Aligned_cols=113 Identities=20% Similarity=0.097 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccccc-----ccccCCCceeccccccceeeeeechhhhhhhhhhc------cchh
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG------GLDR 80 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~------~~~k 80 (179)
..+...+.+|+++...||.||-|-.+++.. +....+...+....-..-..+|+|---.+-..++. .-.+
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~ 431 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVR 431 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCee
Confidence 456678889999999999999999998731 11111112211111112235555543333223321 1278
Q ss_pred eeecccccccccCC---C----------CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhh
Q 030343 81 VYEIGKQFRNEGID---L----------THNPEFTTCEFYMAFADYNDLMELTEKMLSGMI 128 (179)
Q Consensus 81 vf~i~~~fR~E~~~---~----------~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~ 128 (179)
+|+||++|-.+... . .+ .+-|+-. ...++.++...++.+++.+-
T Consensus 432 iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~-~~~w~~~---~~v~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 432 IFEIGDVFVKDEEAERETRHLAGLAAGLAG-EESWQGK---RPVDFYDAKGDLEALLEALG 488 (650)
T ss_pred EEEeeeeEecCCcccchhHHHHHHhhcccc-ccccccC---CCcCHHHHHHHHHHHHHHhC
Confidence 99999999986321 0 12 3333332 23467888888888887654
No 122
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.14 E-value=0.52 Score=42.00 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhh-ccCCceeeeccccccc
Q 030343 11 KTRSKIVSYIRRFL-DNLDFLEVETPMMNMI 40 (179)
Q Consensus 11 ~~rs~i~~~ir~ff-~~~gF~ev~tP~l~~~ 40 (179)
.+++-|++.-|+.| .+.+..||++|+|++.
T Consensus 47 alk~Nil~~WRkhFilEE~MlEvdct~ltP~ 77 (599)
T KOG2298|consen 47 ALKSNILSLWRKHFILEEDMLEVDCTMLTPE 77 (599)
T ss_pred hhHHhHHHHHHHHHhhhhcceeeccCcCCcH
Confidence 46788888899988 5679999999999873
No 123
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=77.72 E-value=2.8 Score=39.82 Aligned_cols=114 Identities=23% Similarity=0.200 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc----ccccCCCceeccccccceeeeeechhhhhhhhhh----cc--chhee
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GG--LDRVY 82 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~--~~kvf 82 (179)
.....+.+|+.+...||.|+-|-.+++.. -+.....+.....--..--+||+|--..+-..++ .+ --++|
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lF 568 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALF 568 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEE
Confidence 44556789999999999999999998641 1100011211111112233566553222222222 22 35999
Q ss_pred eccccccccc---CCCCCCCCcchhh------HHH-hhcchhHHHHHHHHHHHhh
Q 030343 83 EIGKQFRNEG---IDLTHNPEFTTCE------FYM-AFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 83 ~i~~~fR~E~---~~~~Hl~EF~~le------~e~-~~~~~~~lm~~~e~li~~~ 127 (179)
+||+||.... ....|++ +.+.. |.. ...++.++...++.++..+
T Consensus 569 EiG~Vf~~~~~~~~e~~~la-~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 569 EIGRVFLPDGDLPREPEHLA-GVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeeeeCCCCCCCcchhEEE-EEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 9999996521 0111111 00000 000 1146778888888888644
No 124
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=76.54 E-value=3.1 Score=39.06 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhc------cchheeeccc
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG------GLDRVYEIGK 86 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~------~~~kvf~i~~ 86 (179)
...+.+.+|+.+...||.|+-|-.+++.... ..+++......-..-.+||+|----+-..++. .--++|++|.
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~-~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~ 478 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF-SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGH 478 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc-CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeee
Confidence 3556778899999999999999999764211 11122221111122335665532222112221 2358999999
Q ss_pred ccccccC---CCCCCCCc------chhhHHH--hhcchhHHHHHHHHHHHhh
Q 030343 87 QFRNEGI---DLTHNPEF------TTCEFYM--AFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 87 ~fR~E~~---~~~Hl~EF------~~le~e~--~~~~~~~lm~~~e~li~~~ 127 (179)
||-.... ...|++=- ..--|.. ...++.|+...++.++..+
T Consensus 479 Vf~~~~~~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 479 VFNLDSSSIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKL 530 (704)
T ss_pred eEcCCCccccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHC
Confidence 9944211 11121100 0000111 1236888888888888643
No 125
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=72.44 E-value=3.5 Score=39.19 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=55.8
Q ss_pred HHHHHhhccCCceeeecccccccc----ccccC-C-Cceeccccccceeeeeechhhhhhhhhh----ccc--hheeecc
Q 030343 18 SYIRRFLDNLDFLEVETPMMNMIA----GGAAA-R-PFVTHHNDLNMKLYMRIAPELYLKELVV----GGL--DRVYEIG 85 (179)
Q Consensus 18 ~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~-~-~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~--~kvf~i~ 85 (179)
+.+|+++...||.|+-|-.+++.. .+-.. . .+......-..--+||+|----+-..++ .+. -++|+||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG 577 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIG 577 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 578999999999999999998641 11000 0 1221111111223555553222211222 222 5999999
Q ss_pred cccccccCCCCCCCCcchhhHHHhh-------------cchhHHHHHHHHHHHhh
Q 030343 86 KQFRNEGIDLTHNPEFTTCEFYMAF-------------ADYNDLMELTEKMLSGM 127 (179)
Q Consensus 86 ~~fR~E~~~~~Hl~EF~~le~e~~~-------------~~~~~lm~~~e~li~~~ 127 (179)
.||...+.. ..|-.++-+-+++ .++.++...++.++..+
T Consensus 578 ~V~~~~~~~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 578 KVFAKDGLG---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELL 629 (798)
T ss_pred cccCCCCCC---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHc
Confidence 999542210 1121122111111 36888888888888643
No 126
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=70.22 E-value=1.4 Score=40.79 Aligned_cols=22 Identities=9% Similarity=-0.159 Sum_probs=19.5
Q ss_pred CCCcccchhhhccceeeeecCC
Q 030343 154 TPPFRSLNFIYSCKWYKIYHPG 175 (179)
Q Consensus 154 ~~pf~rity~eAi~~l~~d~pd 175 (179)
.+....+||.||++.||+||||
T Consensus 258 ~RQ~~lltY~EAM~rYGSDKPD 279 (630)
T PRK04028 258 QRQLNLLKIRDELKERGASVED 279 (630)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc
Confidence 4566689999999999999998
No 127
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=70.16 E-value=2.9 Score=37.83 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=35.7
Q ss_pred hheeecccccccccC-CCCCCCCcchhhHHHh--hcchhHHHHHHHHHHHhh
Q 030343 79 DRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMA--FADYNDLMELTEKMLSGM 127 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~--~~~~~~lm~~~e~li~~~ 127 (179)
-++|+||+|||.+.. +.+|+..+.+..+-.. ..++.|+...++.+++.+
T Consensus 209 iRLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 209 IKLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 599999999988642 5568877776642122 237889999999999753
No 128
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=69.81 E-value=1.4 Score=38.37 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=39.1
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.-|.|+|-+|||.|.. |+.||--++..-+-+++. +.++=..++|.|+++.
T Consensus 207 PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 207 PLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred CceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 4689999999999984 678988888777766664 4777778888888653
No 129
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.93 E-value=13 Score=32.49 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=39.1
Q ss_pred cccceeeeeechhhhhhhhhhccchheeecccccccccCCCCCCCCcchhhHHHhh
Q 030343 55 DLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF 110 (179)
Q Consensus 55 ~~~~~~~L~~S~ql~~~~~~~~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~ 110 (179)
|.+....|+.---.|---++..|...--..|-|||-...+.+|.|=|+|+|.-..+
T Consensus 128 y~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeidsthypvfhq~eg~~~~ 183 (436)
T KOG2783|consen 128 YVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLW 183 (436)
T ss_pred eecceeeehhcchhhHHHHHHhcccccceeeeeeeeccccccccceeccccceeEE
Confidence 34555566532222322356677777778899999999999999999999975444
No 130
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=61.68 E-value=28 Score=28.24 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh----ccchheeecccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRVYEIGKQFR 89 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kvf~i~~~fR 89 (179)
+.|-+.+-+||.++|-..|.+.-|.+. + +..+.++.|+....|-... ....|+-...+|.|
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~--d-------------DptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR 66 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPR--D-------------DPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIR 66 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCC--C-------------CCchheeccchhhhhHHhcCCCCCCCCceeeeeecee
Confidence 456778889999999999886555531 1 1112223333333332221 22368888899999
Q ss_pred ccc---C--CCCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhhh
Q 030343 90 NEG---I--DLTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGMI 128 (179)
Q Consensus 90 ~E~---~--~~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~~ 128 (179)
.-. . ++||+.=|.|+.- .+|.+ -++.+..+-+++...+
T Consensus 67 ~~DienVG~t~rHhTfFEMLGN-fSFgdYFK~eaI~~awe~LT~~l 111 (232)
T cd00673 67 AGDIDNVGKTGRHHTFFEMLGN-FSFGDYFKEEAIAFAWELLTEVL 111 (232)
T ss_pred cCChhhccccccchhhhhhhcc-cchhhhhHHHHHHHHHHHHHhhc
Confidence 843 2 3589999999954 44445 4778888878776543
No 131
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.62 E-value=11 Score=24.12 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccCCceeee
Q 030343 11 KTRSKIVSYIRRFLDNLDFLEVE 33 (179)
Q Consensus 11 ~~rs~i~~~ir~ff~~~gF~ev~ 33 (179)
+.|..|++.||+||...|=++|.
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46889999999999999977765
No 132
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=52.93 E-value=38 Score=31.31 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh----ccchheeecccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRVYEIGKQFR 89 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kvf~i~~~fR 89 (179)
+.|-+.+-+||.++|-..|.+--|.+.. +-.++++.|+....|.... ....|+-...+|.|
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~---------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR 68 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN---------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLR 68 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC---------------CCCeeeeccchhhhhHHhcCCCCCCCCCccccccccc
Confidence 4566778899999999888865555421 1122333344333333322 12367788889999
Q ss_pred cc---cCC-CCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhh
Q 030343 90 NE---GID-LTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGM 127 (179)
Q Consensus 90 ~E---~~~-~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~ 127 (179)
.- +.+ ++|+.=|-|+.- .+|.+ -++.+..+=+++...
T Consensus 69 ~~Dle~VG~~rHhTfFEMlGn-fSfgdYfK~eai~~awe~lt~~ 111 (594)
T PRK01584 69 TGDIDEVGDLSHLTFFEMLGN-WSLGAYFKEESIKYSFEFLTSP 111 (594)
T ss_pred cccccccCCCcchhHHHhhcc-ccHhhhhHHHHHHHHHHHhccc
Confidence 84 333 479988888765 33434 477777777777543
No 133
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=44.84 E-value=24 Score=32.23 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhh-----hccchheeeccccccc
Q 030343 16 IVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELV-----VGGLDRVYEIGKQFRN 90 (179)
Q Consensus 16 i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~-----~~~~~kvf~i~~~fR~ 90 (179)
|-+.+-+||.++|-+.|.+--+.+.. +..++++.|+....|-.+ .+...++-...||.|.
T Consensus 2 iR~~fl~fF~~~gH~~v~s~~lvp~~---------------d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~ 66 (552)
T PF01411_consen 2 IREKFLDFFEKKGHTIVPSSSLVPRW---------------DPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRT 66 (552)
T ss_dssp HHHHHHHHHHTTT-EEE----SS-TT----------------TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-E
T ss_pred HHHHHHHHHHHCCCEEeccCCcccCC---------------CCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeecc
Confidence 45677889999999988855544421 111222223222222221 1345788999999999
Q ss_pred c----c---C--CCCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhhhh
Q 030343 91 E----G---I--DLTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGMIK 129 (179)
Q Consensus 91 E----~---~--~~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~~~ 129 (179)
- + . ++||+.=|.|+.- .+|.+ -++.+..+-+++...++
T Consensus 67 ~GkhnDld~VG~t~rH~T~FEMlGn-~sfgdYfK~eai~~awe~lt~~l~ 115 (552)
T PF01411_consen 67 GGKHNDLDNVGRTGRHHTFFEMLGN-FSFGDYFKEEAIEYAWEFLTEVLG 115 (552)
T ss_dssp ETTEECGGGTTTSSS--SEEEEEEE-EEECSS-HHHHHHHHHHHHHCTTT
T ss_pred CCCcchhhhcCCCceEeeehhhccc-cccccccHHHHHHHHHHHHHhhcC
Confidence 8 3 2 2589999999865 33333 67888888888875554
No 134
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=38.67 E-value=21 Score=30.95 Aligned_cols=61 Identities=16% Similarity=0.322 Sum_probs=40.9
Q ss_pred cceeeee---echhhhhhhhhhccchheeecccccccccCCCC--CCCCcchhhHHHhhc----chhHHH
Q 030343 57 NMKLYMR---IAPELYLKELVVGGLDRVYEIGKQFRNEGIDLT--HNPEFTTCEFYMAFA----DYNDLM 117 (179)
Q Consensus 57 ~~~~~L~---~S~ql~~~~~~~~~~~kvf~i~~~fR~E~~~~~--Hl~EF~~le~e~~~~----~~~~lm 117 (179)
..++|+| -..+--+++.+.+...--+.||++|+.++.+.. ....|+-+|=|.+|- |++++-
T Consensus 54 ~ddvYiRY~sFn~~~~~~k~i~s~nP~KiDIGaVY~~~P~~~~t~~~s~~~~vekELVFDIDmTDYD~VR 123 (412)
T KOG2851|consen 54 ADDVYIRYLSFNNASEFEKEISSTNPDKIDIGAVYSHRPRNHKTLRKSDFQAVEKELVFDIDMTDYDDVR 123 (412)
T ss_pred cCCcEEEEeccCCHHHHHHHHhhcCCcceeecccccCCccccccccccccceeeeeeEEecccccChHHh
Confidence 3444444 444444444455555566899999999986643 789999999888882 466543
No 135
>PLN02900 alanyl-tRNA synthetase
Probab=35.65 E-value=1e+02 Score=30.18 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh---------ccchheeec
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV---------GGLDRVYEI 84 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---------~~~~kvf~i 84 (179)
+.|-+.+-+||.++|-+.|.+--|.+... -.++++.++....|-... +...|+-..
T Consensus 14 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~d---------------ptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~ 78 (936)
T PLN02900 14 DRIRRTFLSFFESKGHTFLPSSPLVPVDD---------------PTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNT 78 (936)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCcCCCCC---------------CCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeee
Confidence 56677788999999999988666655210 111222222222221211 124678889
Q ss_pred cccccc-------ccCC--CCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhh
Q 030343 85 GKQFRN-------EGID--LTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGM 127 (179)
Q Consensus 85 ~~~fR~-------E~~~--~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~ 127 (179)
.+|.|. |+.+ ++|..=|-||.- .+|.+ -+|.+..+=+++...
T Consensus 79 QkCiR~gGKHnDlenVG~t~rHhTfFEMlGn-fSfgdYfK~eaI~~awe~lT~~ 131 (936)
T PLN02900 79 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKKEAIGWAWELLTKV 131 (936)
T ss_pred cccccCCCCCCCHhhccCCCCchHHHHhhhc-cchhhhhHHHHHHHHHHHHHHh
Confidence 999999 3333 489988888865 33434 457777777776543
No 136
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=33.52 E-value=23 Score=18.48 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.1
Q ss_pred HHHHHHHHhhccCCcee
Q 030343 15 KIVSYIRRFLDNLDFLE 31 (179)
Q Consensus 15 ~i~~~ir~ff~~~gF~e 31 (179)
.+...|.+||.++||.+
T Consensus 2 ~Ln~lI~~YL~~~Gy~~ 18 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKE 18 (27)
T ss_dssp HHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHCCcHH
Confidence 46678899999999975
No 137
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=30.77 E-value=1.4e+02 Score=29.09 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhc-----cchheeeccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG-----GLDRVYEIGKQF 88 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~-----~~~kvf~i~~~f 88 (179)
+.|-+.+-+||.++|-+-|.+--+.+- -..+++|+.++....|-.+.. ...++-...||.
T Consensus 62 ~eiR~~Fl~FF~~~gH~~v~s~pvvpr---------------w~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~Ci 126 (900)
T PRK13902 62 KEMREKFLSFFEKHGHTRIERYPVVAR---------------WRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCI 126 (900)
T ss_pred HHHHHHHHHHHHhCCCEEcCCcCcCCC---------------CCCCeeeeecchhhhhHHhcCCCCCCCCCCceeccccc
Confidence 456777888999999777653222220 011256666666555544432 247889999999
Q ss_pred ccccC---C--CCCCCCcchhhHHHhhc-----c--hhHHHHHHHHHHHhh
Q 030343 89 RNEGI---D--LTHNPEFTTCEFYMAFA-----D--YNDLMELTEKMLSGM 127 (179)
Q Consensus 89 R~E~~---~--~~Hl~EF~~le~e~~~~-----~--~~~lm~~~e~li~~~ 127 (179)
|..+. + +||+.=|.|+.- .+|. + -+|.+..+-+++...
T Consensus 127 R~nDldnVG~t~rH~T~FEMlGn-~sFg~~~~~~YfK~eaI~~a~e~lt~~ 176 (900)
T PRK13902 127 RLNDIDNVGRTGRHLTSFEMMAH-HAFNYPDKEVYWKDETVEYCFEFFTKE 176 (900)
T ss_pred chhhhhhccccCCchhhhhhccc-eeeCCCCcccccHHHHHHHHHHHHHhh
Confidence 99543 2 489999999866 3332 2 367777777777653
No 138
>PF12109 CXCR4_N: CXCR4 Chemokine receptor N terminal; InterPro: IPR022726 This entry represents the N-terminal region of the CXC type 4 chemokine receptor. CXCR4 and its ligand stromal cell-derived factor-1 (a.k.a. CXCL12) are essential for proper fetal development. CXCR4 is also the major coreceptor for T-tropic strains of Human immunodeficiency virus 1, and SDF-1 inhibits HIV-1 infection. Additionally, SDF-1 and CXCR4 mediate cancer cell migration and metastasis. The N-terminal domain of most chemokine receptors is the ligand binding domain and so the N-terminal domain of CXCR4 is the binding site for SDF-1 [].; PDB: 3OE9_B 3OE0_A 3ODU_A 2K03_D 3OE8_A 2K05_D 3OE6_A 2K04_B.
Probab=29.41 E-value=25 Score=19.51 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.9
Q ss_pred ccccccccCC
Q 030343 85 GKQFRNEGID 94 (179)
Q Consensus 85 ~~~fR~E~~~ 94 (179)
-||||.|+.+
T Consensus 21 EpCf~~eNad 30 (33)
T PF12109_consen 21 EPCFREENAD 30 (33)
T ss_dssp S--SS-SSSS
T ss_pred Cccccccccc
Confidence 4788888765
No 139
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=27.27 E-value=35 Score=17.69 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhccCCceeee
Q 030343 13 RSKIVSYIRRFLDNLDFLEVE 33 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~ 33 (179)
+..+...|-+||...||.+..
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHH
Confidence 566788899999999997644
No 140
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=27.03 E-value=1.2e+02 Score=29.62 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhcc-----chheeeccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGG-----LDRVYEIGKQF 88 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~-----~~kvf~i~~~f 88 (179)
+.|-+.+-+||.++|-+-|.+--+.+- -..+++|+.++....|-.+..| ..++-...||.
T Consensus 59 ~eiR~~fl~FF~~~gH~~v~s~pvvpr---------------w~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCi 123 (902)
T TIGR03683 59 DEMREAFLSFFEKHGHTRIKRYPVVAR---------------WRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCI 123 (902)
T ss_pred HHHHHHHHHHHHhCCCEEeCCcCcCcC---------------CCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccc
Confidence 467777888999999777653222220 0112566666655555444322 37888899999
Q ss_pred cccc---CC--CCCCCCcchhhHHHhhc-----c--hhHHHHHHHHHH
Q 030343 89 RNEG---ID--LTHNPEFTTCEFYMAFA-----D--YNDLMELTEKML 124 (179)
Q Consensus 89 R~E~---~~--~~Hl~EF~~le~e~~~~-----~--~~~lm~~~e~li 124 (179)
|..+ .+ +||+.=|.|+.- .+|. + -+|.+..+-+++
T Consensus 124 R~nDldnVG~t~rH~TfFEMlGn-~sFg~~~~~dYfK~EaI~~a~e~l 170 (902)
T TIGR03683 124 RLNDIDNVGRTGRHLTCFEMMAH-HAFNYPDKEIYWKDETVEYCFEFL 170 (902)
T ss_pred cccccccccCCCCcchhhhhccc-eeeCCCCcccCcHHHHHHHHHHHH
Confidence 9854 33 489999999976 3333 2 467777777777
No 141
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=23.68 E-value=1.9e+02 Score=28.08 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh----ccchheeecccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRVYEIGKQFR 89 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kvf~i~~~fR 89 (179)
+.|-+.+-+||.++|-+-|.+--+.+-. +..++++.|+.-..|-.+. ....|+-...+|.|
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~---------------d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR 69 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKN---------------DPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIR 69 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCC---------------CCCeeeeccchhhhhHHhcCCCCCCCCCccccccccc
Confidence 4667788899999998888755554411 1112222333222222221 22468888899999
Q ss_pred ccc---CC--CCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhh
Q 030343 90 NEG---ID--LTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGM 127 (179)
Q Consensus 90 ~E~---~~--~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~ 127 (179)
.-+ .+ ++|..=|-|+.- .+|.+ -+|.++.+-+++...
T Consensus 70 ~nDld~VG~t~rHhTfFEMlGn-~sfgdYfK~eai~~awe~lt~~ 113 (865)
T PRK00252 70 TNDLENVGYTARHHTFFEMLGN-FSFGDYFKEEAIEWAWELLTSV 113 (865)
T ss_pred ccchhhccCCCCchHHHHHhcc-cchhhhhHHHHHHHHHHHHHHH
Confidence 944 22 489998988865 33434 467888888887553
No 142
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=22.66 E-value=1.3e+02 Score=15.47 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 030343 114 NDLMELTEKMLSGMIKEIT 132 (179)
Q Consensus 114 ~~lm~~~e~li~~~~~~~~ 132 (179)
.|++..+-++++.+++.+.
T Consensus 3 ~DIisTIgdfvKlI~~TV~ 21 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVK 21 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4778888888888888764
No 143
>PF09572 RE_XamI: XamI restriction endonuclease; InterPro: IPR019072 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the XamI restriction endonuclease which recognises GTCGAC but cleavage site unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.47 E-value=1.3e+02 Score=24.63 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred HHHHHHHhhccCCceeeeccc
Q 030343 16 IVSYIRRFLDNLDFLEVETPM 36 (179)
Q Consensus 16 i~~~ir~ff~~~gF~ev~tP~ 36 (179)
-++.+.+++..+||+++..+-
T Consensus 125 Qe~~i~~~L~~~GYt~~~~~~ 145 (251)
T PF09572_consen 125 QEAAIAEWLEARGYTKVPGGA 145 (251)
T ss_pred HHHHHHHHHHhcCceEccccc
Confidence 788899999999999999877
Done!