Query 030343
Match_columns 179
No_of_seqs 154 out of 1356
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bju_A Lysyl-tRNA synthetase; 100.0 5.5E-46 1.9E-50 327.9 10.6 170 2-171 168-337 (521)
2 4ex5_A Lysine--tRNA ligase; st 100.0 7.9E-46 2.7E-50 326.4 9.1 163 2-171 196-358 (529)
3 1e1o_A Lysyl-tRNA synthetase, 100.0 3.7E-45 1.3E-49 321.4 9.3 163 2-171 175-337 (504)
4 3a74_A Lysyl-tRNA synthetase; 100.0 5E-44 1.7E-48 313.7 9.6 163 2-171 166-328 (493)
5 1l0w_A Aspartyl-tRNA synthetas 100.0 1.2E-43 4.2E-48 316.2 9.6 158 2-177 136-294 (580)
6 4ah6_A Aspartate--tRNA ligase, 100.0 5.9E-43 2E-47 312.3 9.2 157 2-178 140-298 (617)
7 1c0a_A Aspartyl tRNA synthetas 100.0 7.2E-42 2.5E-46 305.4 9.3 157 2-177 130-287 (585)
8 3nem_A Aspartyl-tRNA synthetas 100.0 1.6E-41 5.5E-46 294.1 6.5 164 1-170 128-293 (438)
9 3m4p_A Ehasnrs, asparaginyl-tR 100.0 8.2E-42 2.8E-46 297.2 4.1 162 1-169 147-309 (456)
10 3a5y_A GENX, putative lysyl-tR 100.0 3.8E-41 1.3E-45 284.1 7.5 144 6-175 32-183 (345)
11 2xgt_A Asparaginyl-tRNA synthe 100.0 3.3E-41 1.1E-45 292.2 5.1 164 1-171 123-289 (435)
12 3i7f_A Aspartyl-tRNA synthetas 100.0 4.9E-41 1.7E-45 296.6 2.2 163 2-170 236-403 (548)
13 1wyd_A Hypothetical aspartyl-t 100.0 1.3E-38 4.5E-43 275.4 4.5 160 2-170 126-288 (429)
14 1eov_A ASPRS, aspartyl-tRNA sy 100.0 1.5E-38 5.2E-43 278.8 3.5 164 2-169 170-339 (487)
15 1x54_A Asparaginyl-tRNA synthe 100.0 2E-38 6.9E-43 274.7 3.8 165 2-170 127-292 (434)
16 1n9w_A Aspartyl-tRNA synthetas 100.0 2.5E-38 8.6E-43 273.1 3.1 161 2-170 117-280 (422)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 6.1E-36 2.1E-40 247.7 6.1 152 2-170 8-171 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.7 1.1E-17 3.8E-22 137.8 7.1 124 4-127 65-206 (290)
19 2rhq_A Phenylalanyl-tRNA synth 99.4 4E-13 1.4E-17 110.8 5.1 118 12-129 54-185 (294)
20 1b7y_A Phers, protein (phenyla 99.3 1.1E-12 3.9E-17 110.5 6.3 115 13-129 103-246 (350)
21 3dsq_A Pyrrolysyl-tRNA synthet 99.3 1.7E-12 6E-17 106.7 5.7 115 13-127 73-202 (288)
22 1z7m_A ATP phosphoribosyltrans 99.1 6.6E-11 2.3E-15 99.4 7.4 120 5-125 31-168 (344)
23 3od1_A ATP phosphoribosyltrans 99.1 5.7E-11 2E-15 101.7 6.3 122 4-126 18-155 (400)
24 3lc0_A Histidyl-tRNA synthetas 99.1 5.6E-11 1.9E-15 103.4 5.3 123 4-127 37-176 (456)
25 3net_A Histidyl-tRNA synthetas 99.1 1.1E-10 3.9E-15 101.6 5.7 122 4-126 20-174 (465)
26 4g85_A Histidine-tRNA ligase, 99.0 1.5E-10 5.2E-15 101.8 5.9 123 3-125 74-211 (517)
27 1wu7_A Histidyl-tRNA synthetas 99.0 3.4E-10 1.1E-14 97.5 7.4 120 5-125 15-150 (434)
28 4g84_A Histidine--tRNA ligase, 99.0 2.5E-10 8.4E-15 98.8 6.6 123 3-125 21-158 (464)
29 3rac_A Histidine-tRNA ligase; 99.0 2.4E-10 8.2E-15 97.0 5.9 121 5-126 32-176 (373)
30 1qe0_A Histidyl-tRNA synthetas 99.0 1.7E-10 5.7E-15 98.8 4.7 120 6-126 12-153 (420)
31 4e51_A Histidine--tRNA ligase; 99.0 2E-10 6.7E-15 100.1 5.1 121 5-126 41-182 (467)
32 12as_A Asparagine synthetase; 99.0 7E-11 2.4E-15 97.2 1.7 159 8-174 3-182 (330)
33 3pco_A Phenylalanyl-tRNA synth 99.0 1.9E-10 6.6E-15 95.9 4.1 113 13-129 109-236 (327)
34 1htt_A Histidyl-tRNA synthetas 99.0 5.1E-10 1.7E-14 95.9 6.6 121 5-126 13-153 (423)
35 1h4v_B Histidyl-tRNA synthetas 99.0 8E-10 2.7E-14 94.6 7.8 120 5-125 12-152 (421)
36 2i4l_A Proline-tRNA ligase; al 99.0 5.9E-10 2E-14 96.8 6.1 108 7-115 64-189 (458)
37 3l4g_A Phenylalanyl-tRNA synth 98.9 8.9E-10 3.1E-14 96.6 6.2 115 13-127 227-398 (508)
38 1evl_A Threonyl-tRNA synthetas 98.9 1E-09 3.4E-14 93.7 5.6 109 7-118 27-154 (401)
39 2j3l_A Prolyl-tRNA synthetase; 98.8 4E-09 1.4E-13 93.8 6.3 110 7-117 44-171 (572)
40 1hc7_A Prolyl-tRNA synthetase; 98.8 4.8E-09 1.6E-13 91.7 6.0 115 8-123 42-178 (477)
41 1nj8_A Proline-tRNA synthetase 98.8 9.9E-09 3.4E-13 89.2 7.1 112 7-119 35-170 (459)
42 1nyr_A Threonyl-tRNA synthetas 98.8 6E-09 2E-13 94.0 5.8 103 7-110 268-390 (645)
43 3a32_A Probable threonyl-tRNA 98.8 7.3E-09 2.5E-13 90.2 5.8 102 8-111 47-170 (471)
44 2dq3_A Seryl-tRNA synthetase; 98.7 1.5E-08 5.2E-13 87.3 6.7 112 8-124 170-303 (425)
45 1qf6_A THRRS, threonyl-tRNA sy 98.7 1.8E-08 6.2E-13 90.9 6.0 109 7-118 268-395 (642)
46 3uh0_A Threonyl-tRNA synthetas 98.7 3.2E-08 1.1E-12 86.1 7.0 115 8-124 62-198 (460)
47 1nj1_A PROR, proline-tRNA synt 98.6 2.3E-08 7.7E-13 87.9 5.5 115 8-124 69-207 (501)
48 1usy_A ATP phosphoribosyltrans 98.6 2.1E-08 7.1E-13 81.7 3.4 103 16-125 6-118 (275)
49 1ses_A Seryl-tRNA synthetase; 98.6 7.4E-08 2.5E-12 82.9 6.7 116 8-124 164-299 (421)
50 2dq0_A Seryl-tRNA synthetase; 98.5 5.7E-08 1.9E-12 84.4 5.3 113 8-125 191-325 (455)
51 3ial_A Prolyl-tRNA synthetase; 98.5 4.9E-08 1.7E-12 86.0 4.5 117 8-125 53-192 (518)
52 4hvc_A Bifunctional glutamate/ 98.5 8.7E-08 3E-12 84.5 5.8 116 8-124 59-197 (519)
53 3cmq_A Phenylalanyl-tRNA synth 98.5 9.3E-08 3.2E-12 82.1 5.7 113 14-129 51-220 (415)
54 2cja_A Seryl-tRNA synthetase; 98.4 1.5E-07 5.1E-12 82.9 4.5 115 8-124 229-393 (522)
55 1wle_A Seryl-tRNA synthetase; 98.3 9E-07 3.1E-11 77.6 7.6 118 8-126 217-357 (501)
56 3vbb_A Seryl-tRNA synthetase, 98.3 4.3E-07 1.5E-11 79.8 5.4 116 8-124 199-345 (522)
57 3lss_A Seryl-tRNA synthetase; 98.3 6.4E-07 2.2E-11 78.2 6.1 115 8-125 206-344 (484)
58 1ati_A Glycyl-tRNA synthetase; 98.3 5.4E-07 1.9E-11 79.2 5.5 33 8-40 37-71 (505)
59 2du7_A O-phosphoseryl-tRNA syn 98.3 4.3E-07 1.5E-11 80.1 4.8 50 78-127 217-269 (549)
60 3err_A Fusion protein of micro 98.2 1.5E-06 5.2E-11 76.8 6.3 114 8-126 273-410 (536)
61 3qne_A Seryl-tRNA synthetase, 98.2 2.6E-06 9E-11 74.3 7.5 115 8-125 183-321 (485)
62 2odr_B Phosphoseryl-tRNA synth 98.2 4.5E-07 1.5E-11 80.9 2.5 50 78-127 224-276 (648)
63 2odr_A Phosphoseryl-tRNA synth 98.2 4.8E-07 1.6E-11 80.8 2.5 50 78-127 224-276 (665)
64 2odr_D Phosphoseryl-tRNA synth 98.2 5E-07 1.7E-11 80.9 2.5 50 78-127 224-276 (685)
65 2odr_C Phosphoseryl-tRNA synth 98.2 5.6E-07 1.9E-11 80.7 2.5 50 78-127 224-276 (701)
66 2du3_A O-phosphoseryl-tRNA syn 98.1 4.4E-06 1.5E-10 73.6 5.7 49 79-127 206-257 (534)
67 2zt5_A Glycyl-tRNA synthetase; 97.9 5.1E-06 1.7E-10 75.5 2.8 33 8-40 99-132 (693)
68 3mf2_A BLL0957 protein; aminoa 97.8 1.8E-05 6.2E-10 66.1 4.4 118 8-127 62-217 (346)
69 3ikl_A DNA polymerase subunit 97.3 0.00029 9.8E-09 61.1 5.3 104 9-123 103-223 (459)
70 1g5h_A Mitochondrial DNA polym 97.1 0.00027 9.3E-09 61.2 3.8 117 8-125 60-215 (454)
71 3l4g_B Phenylalanyl-tRNA synth 97.1 0.00046 1.6E-08 61.6 5.3 115 13-127 393-522 (589)
72 2rhq_B Phenylalanyl-tRNA synth 97.0 0.00074 2.5E-08 62.3 6.0 114 13-127 495-632 (795)
73 3ig2_A Phenylalanyl-tRNA synth 96.9 0.00078 2.7E-08 52.4 4.3 114 14-127 7-151 (213)
74 3ica_A Phenylalanyl-tRNA synth 96.7 0.0014 4.8E-08 51.0 4.4 114 14-127 7-151 (213)
75 1b7y_B Phers, protein (phenyla 95.5 0.016 5.4E-07 53.4 5.6 108 12-127 490-620 (785)
76 3pco_B Phenylalanyl-tRNA synth 90.3 0.13 4.6E-06 47.3 2.7 112 16-127 494-628 (795)
77 1use_A VAsp, vasodilator-stimu 34.0 17 0.00058 20.9 1.2 24 5-28 20-43 (45)
78 3hy0_A Alanyl-tRNA synthetase; 33.2 53 0.0018 28.0 4.7 96 14-125 5-115 (441)
79 1yfs_A Alanyl-tRNA synthetase; 32.5 59 0.002 27.9 4.9 98 14-127 6-118 (465)
80 3lsj_A DEST; transcriptional r 26.7 33 0.0011 24.6 2.2 42 1-42 1-43 (220)
81 1yfn_A Stringent starvation pr 24.6 1E+02 0.0035 21.4 4.2 25 11-39 8-32 (118)
82 1ou8_A Stringent starvation pr 23.2 41 0.0014 23.1 1.9 24 12-39 8-31 (111)
83 1ou9_A Stringent starvation pr 21.5 45 0.0016 23.5 1.9 24 12-39 8-31 (129)
84 1dtc_A Acetyl-delta-toxin; NMR 20.5 93 0.0032 15.4 2.4 19 114-132 3-21 (26)
No 1
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.5e-46 Score=327.94 Aligned_cols=170 Identities=68% Similarity=1.134 Sum_probs=158.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+.++++|++||.|++++|+||.++||+||+||+|++++||+++++|.++.+++|.++||++|||+|+|+++++|++||
T Consensus 168 ~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rV 247 (521)
T 3bju_A 168 LNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRV 247 (521)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCce
Confidence 47899999999999999999999999999999999999999988899998888999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|+|||||||+|+++++++|+|+++|+||+++++.+.+++.+.+...+++...+.+++..||+|+|
T Consensus 248 yeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit 327 (521)
T 3bju_A 248 YEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRIN 327 (521)
T ss_dssp EEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEE
T ss_pred EEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999998888886665555556677889999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+..
T Consensus 328 ~~eai~~~~g 337 (521)
T 3bju_A 328 MVEELEKALG 337 (521)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999987743
No 2
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.9e-46 Score=326.36 Aligned_cols=163 Identities=48% Similarity=0.898 Sum_probs=153.3
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+.++++|++||.|+++||+||.++||+||+||+|++++||+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 196 ~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rV 275 (529)
T 4ex5_A 196 VTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERV 275 (529)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcE
Confidence 48899999999999999999999999999999999999999988899998888999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||||+++++|+|||||||+|++|++++|+|+++|+||+++++.+.+++.+.+.. ..+++..||+|||
T Consensus 276 yeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~-------~~id~~~pf~Rit 348 (529)
T 4ex5_A 276 FEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQG-------RELDLAQPFHRLT 348 (529)
T ss_dssp EEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETT-------EEEETTSCCEEEE
T ss_pred EEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCc-------eeeccCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999987777642 2467889999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+++
T Consensus 349 y~eAi~~~~~ 358 (529)
T 4ex5_A 349 ITQAIQKYAP 358 (529)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 3
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.7e-45 Score=321.44 Aligned_cols=163 Identities=53% Similarity=0.931 Sum_probs=151.7
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++||.|++++|+||.++||+||+||+|+++++|+++++|.++.++++.++||++|||+|+|+++++|++||
T Consensus 175 ~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rV 254 (504)
T 1e1o_A 175 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERV 254 (504)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcE
Confidence 47899999999999999999999999999999999999999888899998778999999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||+|+++++|+|||||+|+|++|++++|+|+++|+||+++++.+.+.+.+.+... .+++..||+|||
T Consensus 255 yeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~-------~i~~~~pf~rit 327 (504)
T 1e1o_A 255 FEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEH-------VFDFGKPFEKLT 327 (504)
T ss_dssp EEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTE-------EEETTSCCEEEE
T ss_pred EEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCE-------eeccCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999887766321 356788999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+++
T Consensus 328 y~eAi~~~~~ 337 (504)
T 1e1o_A 328 MREAIKKYRP 337 (504)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHHcC
Confidence 9999999986
No 4
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=5e-44 Score=313.67 Aligned_cols=163 Identities=54% Similarity=0.905 Sum_probs=152.1
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
+|+.+++++++||.|++++|+||.++||+||+||+|+++++|+++++|.+..+++|+++||++|||+|+|+++++|++||
T Consensus 166 ~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G~~rV 245 (493)
T 3a74_A 166 MNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKV 245 (493)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHHHHhhcccCce
Confidence 47899999999999999999999999999999999999998888899998778899999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccch
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSLN 161 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~rit 161 (179)
|+||||||+|+++++|+|||||+|+|++|++++|+|+++|+||+++++.+.+.+.+.+.. ..+++..||+|||
T Consensus 246 yeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~-------~~i~~~~pf~rit 318 (493)
T 3a74_A 246 YEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGE-------HLVDLTPEWRRLH 318 (493)
T ss_dssp EEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETT-------EEEECCSSCEEEE
T ss_pred EEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCC-------EeeccCCCcceee
Confidence 999999999999999999999999999999999999999999999999999988776632 1356788999999
Q ss_pred hhhccceeee
Q 030343 162 FIYSCKWYKI 171 (179)
Q Consensus 162 y~eAi~~l~~ 171 (179)
|.||++.+++
T Consensus 319 y~eai~~~~~ 328 (493)
T 3a74_A 319 MVDAIKEYVG 328 (493)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999999976
No 5
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.2e-43 Score=316.17 Aligned_cols=158 Identities=27% Similarity=0.532 Sum_probs=142.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceee-eeechhhhhhhhhhccchh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLY-MRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~-L~~S~ql~~~~~~~~~~~k 80 (179)
.|+.+++++++||.+++++|+||.++||+||+||+|+.+.+|+ +++|.++.+.++..+| |+||||+|+|++|++|++|
T Consensus 136 R~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~r 214 (580)
T 1l0w_A 136 RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEG-ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDR 214 (580)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CCCccccccccCCceeECccCHHHHHHHHHHhccCC
Confidence 4789999999999999999999999999999999999754443 4779886665555554 9999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||||||+|+.+++|.+||||||+|++|++++|+|+++|+||+++++.+.+. ++..||+||
T Consensus 215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~-----------------~~~~pf~ri 277 (580)
T 1l0w_A 215 YFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV-----------------ELPLPFPRL 277 (580)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC-----------------CCCSSCCEE
T ss_pred eEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----------------ccCCCccEE
Confidence 999999999999999999999999999999999999999999999999988641 335699999
Q ss_pred hhhhccceeeeecCCCC
Q 030343 161 NFIYSCKWYKIYHPGRS 177 (179)
Q Consensus 161 ty~eAi~~l~~d~pd~~ 177 (179)
||.||++.||+|+||+|
T Consensus 278 ty~eA~~~~g~dkpd~r 294 (580)
T 1l0w_A 278 SYEEAMERYGSDKPDLR 294 (580)
T ss_dssp EHHHHHHHHSSSSCCCS
T ss_pred EHHHHHHHhcCCCcccc
Confidence 99999999999999987
No 6
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=312.25 Aligned_cols=157 Identities=25% Similarity=0.434 Sum_probs=141.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhc-cCCceeeeccccccc-cccccCCCceeccccccceeeeeechhhhhhhhhhccch
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLD-NLDFLEVETPMMNMI-AGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLD 79 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~-~~gF~ev~tP~l~~~-~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~ 79 (179)
-++.+++++++||.+++++|+||. ++||+||+||+|+++ ++|+ .+|.++.+..|..+||+||||+|+|+++++|++
T Consensus 140 R~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA--~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~ 217 (617)
T 4ah6_A 140 RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLD 217 (617)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSS--CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCC--cCceeccccCCcccccccCHHHHHHHHHhcccC
Confidence 356889999999999999999996 799999999999864 4443 578887677789999999999999999999999
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
|||+||||||+|+.+++|+|||||+|+|++|++++|+|+++|+|++++++.+. .++..||+|
T Consensus 218 rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~------------------~~~~~pf~r 279 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDK------------------DPVVVPFPT 279 (617)
T ss_dssp EEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSS------------------CCCCSSCCE
T ss_pred cEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhc------------------CccCCCceE
Confidence 99999999999999999999999999999999999999999999999877531 134679999
Q ss_pred chhhhccceeeeecCCCCC
Q 030343 160 LNFIYSCKWYKIYHPGRSL 178 (179)
Q Consensus 160 ity~eAi~~l~~d~pd~~~ 178 (179)
|||.||++.||+||||+|.
T Consensus 280 ~ty~eA~~~ygsDkPDlR~ 298 (617)
T 4ah6_A 280 MTFAEVLATYGTDKPDTRF 298 (617)
T ss_dssp EEHHHHHHHTSSSSCCSSS
T ss_pred eEHHHHHHHHcCCCCcccc
Confidence 9999999999999999984
No 7
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=7.2e-42 Score=305.36 Aligned_cols=157 Identities=30% Similarity=0.498 Sum_probs=139.9
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccce-eeeeechhhhhhhhhhccchh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMK-LYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~-~~L~~S~ql~~~~~~~~~~~k 80 (179)
.|+.+++++++||.+++++|+||.++||+||+||+|+.+.+|+ +++|.++.+.++.. +||+||||+|+|++|++|++|
T Consensus 130 R~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~r 208 (585)
T 1c0a_A 130 RRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEG-ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR 208 (585)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CccceecccccCCceEeCccCHHHHHHHHHhcCCCc
Confidence 4789999999999999999999999999999999999654443 46798866655444 459999999999999999999
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
||+||||||+|+.+++|.+||||||+|++|++++|+|+++|+||+++++.+.+. ++.. |+||
T Consensus 209 vfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~-----------------~~~~-f~r~ 270 (585)
T 1c0a_A 209 YYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGV-----------------DLGD-FPVM 270 (585)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSC-----------------CCCS-CCEE
T ss_pred eEEEeceeecCCCCCCcCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----------------Cccc-ccee
Confidence 999999999999999988899999999999999999999999999999988642 1223 9999
Q ss_pred hhhhccceeeeecCCCC
Q 030343 161 NFIYSCKWYKIYHPGRS 177 (179)
Q Consensus 161 ty~eAi~~l~~d~pd~~ 177 (179)
||.||++.|++|+||+|
T Consensus 271 ty~ea~~~~g~dkpd~r 287 (585)
T 1c0a_A 271 TFAEAERRYGSDKPDLR 287 (585)
T ss_dssp EHHHHHHHHSCSSCCTT
T ss_pred eHHHHHHHhcCCCcccc
Confidence 99999999999999986
No 8
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.6e-41 Score=294.11 Aligned_cols=164 Identities=24% Similarity=0.390 Sum_probs=140.2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
+.|+.+++++++||.+++++|+||.++||+||+||+|++++++++++.|.+ +++++++||++|||+|+|+++++|++|
T Consensus 128 lr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~--~~~~~~~yL~~Spql~~q~l~~~g~~r 205 (438)
T 3nem_A 128 LRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM--KYFEEDAFLAQSPQLYKQIMMASGLDR 205 (438)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEE--EETTEEEEECSCSHHHHHHGGGTTCCE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeE--eeCCccEEEecChHHHHHHHHhcCCCc
Confidence 357899999999999999999999999999999999998765555566765 578999999999999999999999999
Q ss_pred eeecccccccccCCC-CCCCCcchhhHHHhhcc-hhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcc
Q 030343 81 VYEIGKQFRNEGIDL-THNPEFTTCEFYMAFAD-YNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFR 158 (179)
Q Consensus 81 vf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ 158 (179)
||+||||||+|++++ ||++||||+|+|+++++ ++|+|+++|+||+++++.+.+.+...+...+.+ + ..++.||+
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~---l-~~~~~pf~ 281 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE---L-EEPKLPFP 281 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC---C-CCCCSSCC
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc---c-ccCCCCce
Confidence 999999999999986 89999999999999998 999999999999999999887553222111111 1 12357999
Q ss_pred cchhhhccceee
Q 030343 159 SLNFIYSCKWYK 170 (179)
Q Consensus 159 rity~eAi~~l~ 170 (179)
||||.||++++.
T Consensus 282 rity~eai~~l~ 293 (438)
T 3nem_A 282 RVSYDKALEILG 293 (438)
T ss_dssp EEEHHHHHHHHH
T ss_pred EEEHHHHHHHHH
Confidence 999999998764
No 9
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=8.2e-42 Score=297.19 Aligned_cols=162 Identities=19% Similarity=0.351 Sum_probs=134.7
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
+.|+.+++++++||.+++++|+||.++||+||+||+|+++.+++++..|.+ +++|+++||++|||+|+|++++ |++|
T Consensus 147 lR~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~--~~~~~~~~L~~SpqL~lq~l~~-g~~r 223 (456)
T 3m4p_A 147 IRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL--QYFNEPAYLTQSSQLYLESVIA-SLGK 223 (456)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEE--EETTEEEEECSCCHHHHHTTHH-HHSS
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccc--cccCCCcccccCHHHHHHHHHh-ccCc
Confidence 458899999999999999999999999999999999987654444567864 7899999999999999998775 6999
Q ss_pred eeecccccccccCC-CCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCccc
Q 030343 81 VYEIGKQFRNEGID-LTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRS 159 (179)
Q Consensus 81 vf~i~~~fR~E~~~-~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~r 159 (179)
||+||||||||+++ .||++||||||||++|++++|+|+++|+||+++++.+.+.+...+...+.+. .....||+|
T Consensus 224 Vyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~----~~~~~pf~r 299 (456)
T 3m4p_A 224 SFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHL----KLPTRPFKR 299 (456)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC----CCCCSSCEE
T ss_pred EEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCccc----ccCCCCCeE
Confidence 99999999999987 5899999999999999999999999999999999998775432221111111 123579999
Q ss_pred chhhhcccee
Q 030343 160 LNFIYSCKWY 169 (179)
Q Consensus 160 ity~eAi~~l 169 (179)
|||.||++++
T Consensus 300 ity~eAi~~l 309 (456)
T 3m4p_A 300 MTYADAIKYC 309 (456)
T ss_dssp EEHHHHHHHH
T ss_pred eeHHHHHHHH
Confidence 9999999987
No 10
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=3.8e-41 Score=284.11 Aligned_cols=144 Identities=32% Similarity=0.491 Sum_probs=130.5
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCceeeeccccccccc-cccCCCceecccccc------ceeeeeechhhhhhhhhhccc
Q 030343 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAG-GAAARPFVTHHNDLN------MKLYMRIAPELYLKELVVGGL 78 (179)
Q Consensus 6 ~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~-~~~~~~f~~~~~~~~------~~~~L~~S~ql~~~~~~~~~~ 78 (179)
.++++++||.|+++||+||.++||+||+||+|+++++ |+.+++|.+ ++++ .++||++|||+|+|+++++|+
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~--~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~ 109 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET--RFVGPGHSQGMNLWLMTSPEYHMKRLLVAGC 109 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE--EECCSTTSCCEEEEECSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE--EecCcccccCCCEeecCCHHHHHHHHHHcCC
Confidence 6799999999999999999999999999999997654 456889987 4454 789999999999999999999
Q ss_pred hheeecccccccccCCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcc
Q 030343 79 DRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFR 158 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ 158 (179)
+|||+||||||+|+++++|+|||||||+|+++++++|+|+++|+||+++++. .||+
T Consensus 110 ~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~------------------------~~~~ 165 (345)
T 3a5y_A 110 GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------------------PAAE 165 (345)
T ss_dssp CSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC------------------------CCCE
T ss_pred CcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC------------------------CCCc
Confidence 9999999999999999999999999999999999999999999999998871 2899
Q ss_pred cchhhhcccee-eeecCC
Q 030343 159 SLNFIYSCKWY-KIYHPG 175 (179)
Q Consensus 159 rity~eAi~~l-~~d~pd 175 (179)
||||.||++.+ |+|.|+
T Consensus 166 rity~ea~~~~~g~d~~~ 183 (345)
T 3a5y_A 166 SLSYQQAFLRYLEIDPLS 183 (345)
T ss_dssp EEEHHHHHHHHTCCCTTC
T ss_pred EeeHHHHHHHHhCCCCCC
Confidence 99999999887 666664
No 11
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=3.3e-41 Score=292.25 Aligned_cols=164 Identities=18% Similarity=0.313 Sum_probs=137.9
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchh
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDR 80 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~k 80 (179)
+.|+.+++++++||.+++++|+||.++||+||+||+|+++.++++++.|.+ +++|+++||++|||+|+|+++ +|++|
T Consensus 123 lr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~--~~~g~~~~L~~SpqLylq~l~-~g~~r 199 (435)
T 2xgt_A 123 IRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL--DYFGEQSFLTQSSQLYLETCI-PTLGD 199 (435)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEE--EETTEEEEECSCSHHHHHHHH-HHHCS
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceee--ccCCcccccCCChHHHHHHhh-hccCc
Confidence 357899999999999999999999999999999999987655555678875 789999999999999999877 47999
Q ss_pred eeecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEE--ecCCCCCCCceEeccCCCc
Q 030343 81 VYEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIK--YHASGLDKDPIEIDFTPPF 157 (179)
Q Consensus 81 vf~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pf 157 (179)
||+||||||+|++++ ||++||||||||+++++++|+|+++|+|++++++.+.+.+... +...+.+.. ....||
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf 275 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPF 275 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSC
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCc
Confidence 999999999999886 8999999999999999999999999999999999987653211 110011100 124799
Q ss_pred ccchhhhccceeee
Q 030343 158 RSLNFIYSCKWYKI 171 (179)
Q Consensus 158 ~rity~eAi~~l~~ 171 (179)
+||||.||++.++.
T Consensus 276 ~rity~ea~~~~~~ 289 (435)
T 2xgt_A 276 LRMEYKDAIKWLQE 289 (435)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred eEEEHHHHHHHHHh
Confidence 99999999987754
No 12
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=4.9e-41 Score=296.56 Aligned_cols=163 Identities=22% Similarity=0.418 Sum_probs=123.9
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
-++.+++++++||.+++++|+||.++||+||+||+|+++++++++++|.+ ++++.++||++|||+|+|+++++|++||
T Consensus 236 R~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--~~~~~~~yL~~Spql~~k~ll~~g~~rV 313 (548)
T 3i7f_A 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--KYFDRKAYLAQSPQLYKQMAIMGDFRKV 313 (548)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------CCBCSCTHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE--ecCCCceEeccCHHHHHHHHHhcCcCcE
Confidence 46889999999999999999999999999999999999887777889976 6789999999999999999999999999
Q ss_pred eecccccccccCC-CCCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEe---cCCCCCCCceEeccCCC
Q 030343 82 YEIGKQFRNEGID-LTHNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKY---HASGLDKDPIEIDFTPP 156 (179)
Q Consensus 82 f~i~~~fR~E~~~-~~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p 156 (179)
|+||||||+|+++ .||++||||||||+++. +++|+|+++|+||+++++.+.+.+..++ ....+. .. +.+ .|
T Consensus 314 feI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~-~~--~~~-~p 389 (548)
T 3i7f_A 314 FEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF-ED--LIY-RP 389 (548)
T ss_dssp EEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCC-CC--CCC-CS
T ss_pred EEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCc-cc--ccc-CC
Confidence 9999999999986 58999999999999997 7999999999999999998875442111 000000 11 122 79
Q ss_pred cccchhhhccceee
Q 030343 157 FRSLNFIYSCKWYK 170 (179)
Q Consensus 157 f~rity~eAi~~l~ 170 (179)
|+||||.||++++.
T Consensus 390 f~rit~~eai~~l~ 403 (548)
T 3i7f_A 390 FLRLTYKEAIEMLR 403 (548)
T ss_dssp CEEEEHHHHHHHHH
T ss_pred cceeEHHHHHHHHH
Confidence 99999999999873
No 13
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-38 Score=275.38 Aligned_cols=160 Identities=28% Similarity=0.431 Sum_probs=139.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++|+.+++++|+||.++||+||+||+|+++.+|++.++|.+ +++|+++||++|||+|+|+ +++|++||
T Consensus 126 r~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~~L~~Spql~~~~-~~~g~~rv 202 (429)
T 1wyd_A 126 RRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPV--IYFGKEAFLAQSPQLYKEL-MAGVVERV 202 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEE--EETTEEEEECSCCHHHHHH-HHHHHSEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEE--ecCCceEEecCCcHHHHHH-HHhCcCce
Confidence 37889999999999999999999999999999999998877777788987 6889999999999999998 77889999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhccee--EEecCCCCCCCceEeccCCCcc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYK--IKYHASGLDKDPIEIDFTPPFR 158 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pf~ 158 (179)
|+||||||+|++++ ||+|||||+|+|+++.+++|+|+++|++++++++.+.+.+. +++... . ++ .+..||+
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~--~---~~-~l~~pf~ 276 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNY--E---PP-EVKIPIK 276 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTC--C---CC-CCCSSCE
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccc--c---cc-cCCCCcc
Confidence 99999999999986 89999999999999999999999999999999999876432 222111 1 10 1257999
Q ss_pred cchhhhccceee
Q 030343 159 SLNFIYSCKWYK 170 (179)
Q Consensus 159 rity~eAi~~l~ 170 (179)
||||.||++.+.
T Consensus 277 rity~eA~~~~~ 288 (429)
T 1wyd_A 277 RLKYTEAIEILR 288 (429)
T ss_dssp EEEHHHHHHHHH
T ss_pred EEEHHHHHHHHH
Confidence 999999999884
No 14
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=1.5e-38 Score=278.78 Aligned_cols=164 Identities=22% Similarity=0.403 Sum_probs=138.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.++.+++++++|+.+++++|+||.++||+||+||+|+++++|+++++|.+ .++|+++||++|||+|+|+++++|++||
T Consensus 170 r~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~--~~~~~~~~L~~Spql~~k~l~~~g~~rv 247 (487)
T 1eov_A 170 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV--TYFKGKAYLAQSPQFNKQQLIVADFERV 247 (487)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE--EETTEEEEECSCTHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee--ccCCccEEcccChHHHHHHHHhcCCCce
Confidence 47889999999999999999999999999999999999877777899987 4689999999999999999999999999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEecC--CCCCCCceEecc--CC
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKYHA--SGLDKDPIEIDF--TP 155 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 155 (179)
|+||||||+|++++ ||++||||+|+|+++. +++|+|+++|+|++++++.+.+.+..++.. ...... ..++ ..
T Consensus 248 y~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~ 325 (487)
T 1eov_A 248 YEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVE--EFKLPKDG 325 (487)
T ss_dssp EEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC--CCCCCTTC
T ss_pred EEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCc--ceecccCC
Confidence 99999999999975 8999999999999986 699999999999999999887654322100 000000 1122 24
Q ss_pred Ccccchhhhcccee
Q 030343 156 PFRSLNFIYSCKWY 169 (179)
Q Consensus 156 pf~rity~eAi~~l 169 (179)
||+|++|.||++++
T Consensus 326 ~~~ri~~~ea~~~l 339 (487)
T 1eov_A 326 KMVRLTYKEGIEML 339 (487)
T ss_dssp CCEEEEHHHHHHHH
T ss_pred CeeEEEHHHHHHHH
Confidence 99999999999765
No 15
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=2e-38 Score=274.68 Aligned_cols=165 Identities=22% Similarity=0.308 Sum_probs=140.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++|+.+++++|+||.++||+||+||+|+++.++++.++|.+ +++|+++||++|||+|+|+ ++++++||
T Consensus 127 r~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~--~~~~~~~~Lr~Spel~~~~-~~~g~~rv 203 (434)
T 1x54_A 127 RTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL--KYFDKYAYLSQSAQLYLEA-AIFGLEKV 203 (434)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEE--EETTEEEEECSCSHHHHHH-HHHHHSEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEE--eecCCcEEeccChHHHHHH-HhcCccce
Confidence 47899999999999999999999999999999999998877776788887 6889999999999999997 77889999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEeccCCCcccc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDFTPPFRSL 160 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 160 (179)
|+||||||+|++++ ||++||||+|+|+++.+++|+|+++|++++++++.+.+.+..++...+...+.+ ..++.||+|+
T Consensus 204 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~-~~~~~pf~ri 282 (434)
T 1x54_A 204 WSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTL-KNTEPPFPRI 282 (434)
T ss_dssp EEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHH-HTCCSSCCEE
T ss_pred EEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccccc-cccCCCCcEE
Confidence 99999999999986 899999999999999999999999999999999998775432221111111111 1135799999
Q ss_pred hhhhccceee
Q 030343 161 NFIYSCKWYK 170 (179)
Q Consensus 161 ty~eAi~~l~ 170 (179)
||.||++.|.
T Consensus 283 ty~ea~~~~~ 292 (434)
T 1x54_A 283 SYDEAIDILQ 292 (434)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 9999999885
No 16
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=2.5e-38 Score=273.14 Aligned_cols=161 Identities=25% Similarity=0.373 Sum_probs=103.4
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhhccchhe
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRV 81 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~~~~kv 81 (179)
.|+.+++++++|+.+++++|+||.++||+||+||+|+++.+|+++++|.+ +++|+++||++|||+|+|+++ +|++||
T Consensus 117 r~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~--~~~g~~~~L~~Spel~~~~l~-~g~~rv 193 (422)
T 1n9w_A 117 RGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV--DYFEKRAYLAQSPQLYKQIMV-GVFERV 193 (422)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------CHHHHHHHH-HHHSEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEE--eeCCCcEEeeeCHHHHHHHHh-hCCCce
Confidence 47899999999999999999999999999999999998877766778876 678999999999999999876 779999
Q ss_pred eecccccccccCCC-CCCCCcchhhHHHhhc-chhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceEecc-CCCcc
Q 030343 82 YEIGKQFRNEGIDL-THNPEFTTCEFYMAFA-DYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIEIDF-TPPFR 158 (179)
Q Consensus 82 f~i~~~fR~E~~~~-~Hl~EF~~le~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pf~ 158 (179)
|+||||||+|++++ ||+|||||+|+|++++ +++|+|+++|++++++++.+.+.+...+...+.. ++. ..||+
T Consensus 194 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~-----~~~~~~pf~ 268 (422)
T 1n9w_A 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGAT-----WPSFPQDIP 268 (422)
T ss_dssp EEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCC-----CCCCSSSCC
T ss_pred eEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcc-----ccccCCCcc
Confidence 99999999999987 8999999999999999 9999999999999999999876542221111111 111 27999
Q ss_pred cchhhhccceee
Q 030343 159 SLNFIYSCKWYK 170 (179)
Q Consensus 159 rity~eAi~~l~ 170 (179)
||||.||++.|+
T Consensus 269 rity~eA~~~~~ 280 (422)
T 1n9w_A 269 RLTHAEAKRILK 280 (422)
T ss_dssp EEEHHHHHHHHH
T ss_pred eeEHHHHHHHHH
Confidence 999999999885
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=6.1e-36 Score=247.68 Aligned_cols=152 Identities=19% Similarity=0.285 Sum_probs=133.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc--------cccccCCCceeccccccceeeeeechhhhhhhh
Q 030343 2 LNVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI--------AGGAAARPFVTHHNDLNMKLYMRIAPELYLKEL 73 (179)
Q Consensus 2 ~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~--------~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~ 73 (179)
-|+ .++++++|+.+++++|+||.++||+||+||+|+++ .+++ +++|.+ ++++++++|++|||+|+|++
T Consensus 8 r~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--~~~~~~~~L~~Spe~~~~~l 83 (294)
T 1nnh_A 8 SRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--EIYGVKMRLTHSMILHKQLA 83 (294)
T ss_dssp TSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE--EETTEEEEECSCSHHHHHHH
T ss_pred hcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE--EcCCCCEEeccChHHHHHHH
Confidence 467 89999999999999999999999999999999988 5665 788886 47889999999999999999
Q ss_pred hhccchheeeccccccccc--CC-CCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhcceeEEecCCCCCCCceE
Q 030343 74 VVGGLDRVYEIGKQFRNEG--ID-LTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYKIKYHASGLDKDPIE 150 (179)
Q Consensus 74 ~~~~~~kvf~i~~~fR~E~--~~-~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (179)
+++|+.|||+||||||+|+ .+ .||++||||+|+|+++.+++|+|+++|++++.+++.+.+.... .
T Consensus 84 ~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~------------~ 151 (294)
T 1nnh_A 84 IAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGR------------E 151 (294)
T ss_dssp HHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSS------------C
T ss_pred hhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcc------------c
Confidence 9889999999999999999 66 4999999999999999999999999999999999877641110 1
Q ss_pred ec-cCCCcccchhhhccceee
Q 030343 151 ID-FTPPFRSLNFIYSCKWYK 170 (179)
Q Consensus 151 ~~-~~~pf~rity~eAi~~l~ 170 (179)
++ +. +|+|++|.||++.++
T Consensus 152 i~~~~-~~~r~~y~ea~~~~g 171 (294)
T 1nnh_A 152 FPKTK-RFEVFEYSEVLEEFG 171 (294)
T ss_dssp CCCCS-SCEEEEHHHHHHHTS
T ss_pred cccCC-CceEeEHHHHHHHhC
Confidence 12 23 399999999997665
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.71 E-value=1.1e-17 Score=137.75 Aligned_cols=124 Identities=22% Similarity=0.374 Sum_probs=98.1
Q ss_pred hhhhhHHHH-----HHHHHHHHHHhhccCCceeeeccccccccc----c-ccCCCceeccccccceeeee--echhhhhh
Q 030343 4 VEVRQIFKT-----RSKIVSYIRRFLDNLDFLEVETPMMNMIAG----G-AAARPFVTHHNDLNMKLYMR--IAPELYLK 71 (179)
Q Consensus 4 ~~~~~~~~~-----rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~----~-~~~~~f~~~~~~~~~~~~L~--~S~ql~~~ 71 (179)
+.+++++++ ++.+.+.+|++|.+.||.||.||+|++... + ....++.....+++...+|+ +||+++..
T Consensus 65 ~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~ 144 (290)
T 3qtc_A 65 KDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNY 144 (290)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHH
T ss_pred chHHHHhccccccHHHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHH
Confidence 567788888 999999999999999999999999987521 1 11122211123456789999 99999965
Q ss_pred hhhh----ccchheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 72 ELVV----GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 72 ~~~~----~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.... .+..|+|+||+|||+|..+.+|++||+|+|+++++. ++.+++.+++++++.+
T Consensus 145 l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 145 LRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp HHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 4322 456899999999999988889999999999999885 4888888888888764
No 19
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.36 E-value=4e-13 Score=110.80 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhccCCceeeeccccccccccccCCCceec--------cccccceeeeeechhhhhhhhhhcc----ch
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTH--------HNDLNMKLYMRIAPELYLKELVVGG----LD 79 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~--------~~~~~~~~~L~~S~ql~~~~~~~~~----~~ 79 (179)
-.+.+.+.+|++|...||.||++|.+.+...+-....+... .-+......||+|.-..+.++++.+ ..
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~ 133 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPV 133 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCc
Confidence 35678999999999999999999998763210000001000 0112245677776665556677766 68
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHhhhh
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~~~~ 129 (179)
|+|+||+|||++..+.+|++||+|+++.+++ .++.+++..++.+++.++.
T Consensus 134 riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 134 KIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp EEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred cEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999987678899999999999998 5799999999999987754
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.33 E-value=1.1e-12 Score=110.45 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc---------ccccC----CCceeccccc----------cceeeee--echh
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA---------GGAAA----RPFVTHHNDL----------NMKLYMR--IAPE 67 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~---------~~~~~----~~f~~~~~~~----------~~~~~L~--~S~q 67 (179)
.+.+.+.||++|...||.||.+|.+.+.. ..+++ +.|.+....- .....|| +||.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 56789999999999999999999997631 11111 2232211110 1334455 5666
Q ss_pred hhhhhhhhc--cchheeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhhhh
Q 030343 68 LYLKELVVG--GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 68 l~~~~~~~~--~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~~~ 129 (179)
+. +.++. ...|+|++|+|||+|..+.+|++||+|+|+.+++. ++.|++..++.+++.++.
T Consensus 183 ll--r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 183 QV--RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp HH--HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred HH--HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 55 34543 34689999999999887888999999999999986 799999999999988765
No 21
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.30 E-value=1.7e-12 Score=106.69 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc----ccccCC-Cceeccccccceeeeee--chhhhh--hhhhh--ccchhe
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAAR-PFVTHHNDLNMKLYMRI--APELYL--KELVV--GGLDRV 81 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~~-~f~~~~~~~~~~~~L~~--S~ql~~--~~~~~--~~~~kv 81 (179)
...+.+.+|++|...||.||.||.|++.. .|...+ .+....+..+...+|++ +|.+.. ...+. ...-|+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 47899999999999999999999998732 222111 22111234456678884 455441 11111 123599
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhhc----chhHHHHHHHHHHHhh
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAFA----DYNDLMELTEKMLSGM 127 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~~----~~~~lm~~~e~li~~~ 127 (179)
|++|+|||+|..+..|++||+|+|+++.+. ++.+++.+++++++.+
T Consensus 153 feiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 153 FEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988774 4788888888888765
No 22
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.14 E-value=6.6e-11 Score=99.45 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------ccc----cCCCceeccccccceeeeeechhhhhhhhh
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~ 74 (179)
..-.-.+++..+.+.+|+.|...||.||.||++.+.. ++. ..+.|.. .+..|+.+.|+.-.....-+++
T Consensus 31 ~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~ 109 (344)
T 1z7m_A 31 MTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQF-IKHEGQSITLRYDFTLPLVRLY 109 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEE-ECTTCCEEEECCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEE-ECCCCCEEecCCCCcHHHHHHH
Confidence 3456678999999999999999999999999998731 121 1233432 3556788888854433333333
Q ss_pred hc----cchheeecccccccccCCCCCCCCcchhhHHHhhcch----hHHHHHHHHHHH
Q 030343 75 VG----GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADY----NDLMELTEKMLS 125 (179)
Q Consensus 75 ~~----~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~----~~lm~~~e~li~ 125 (179)
+. ..-|.|++|+|||+|+++..|..||+|+++|+.+.+- .|++.++.++++
T Consensus 110 ~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~ 168 (344)
T 1z7m_A 110 SQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIE 168 (344)
T ss_dssp HTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 32 3579999999999999888899999999999988542 355555555544
No 23
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.12 E-value=5.7e-11 Score=101.72 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=84.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccc-cCCCceeccccccceeeeeechhhhhhhhhh--
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGA-AARPFVTHHNDLNMKLYMRIAPELYLKELVV-- 75 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~-~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~-- 75 (179)
.....-.+++..+.+.+++.|...||.||.||++.... ++. ..+.|.. .+..|+.+.|+.-.....-+.++
T Consensus 18 d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~ 96 (400)
T 3od1_A 18 DTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKL-LDQQGNTLVLRPDMTAPIARLVASS 96 (400)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEE-ECTTSCEEEECSCSHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEE-ECCCCCEEEECCCCHHHHHHHHHhh
Confidence 34456678999999999999999999999999997632 221 1233432 35567788888443333333332
Q ss_pred ----ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 76 ----GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
...-|.|++|+|||.|+++..|..||+|+++|+.+.+ -.|++.++.++++.
T Consensus 97 ~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~ 155 (400)
T 3od1_A 97 LKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKR 155 (400)
T ss_dssp CSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHH
Confidence 2246999999999999998899999999999998853 23556665555543
No 24
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.10 E-value=5.6e-11 Score=103.35 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=84.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc--CCCceeccccccceeeeeechhhhhhhhhhc
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA--ARPFVTHHNDLNMKLYMRIAPELYLKELVVG 76 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~--~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~ 76 (179)
.....-.+++..+.+.+|+.|...||.||.||++.... .|.. .+.|. ..+..|+.+.|+.-.....-++++.
T Consensus 37 d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~-f~D~~g~~l~LRpd~T~~~aR~~~~ 115 (456)
T 3lc0_A 37 DFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFN-FITKGGHRVALRPEMTPSLARLLLG 115 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEE-EECSSSCEEEECSCSHHHHHHHHHH
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEE-EEcCCCCEEecCCcCHHHHHHHHHh
Confidence 34456678999999999999999999999999998742 1221 22343 2355677888885443333333332
Q ss_pred ------cchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHhh
Q 030343 77 ------GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSGM 127 (179)
Q Consensus 77 ------~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~~ 127 (179)
..-|.|++|+|||.|+++..|..||+|+++|+.+.+ -.|++.++.++++.+
T Consensus 116 ~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l 176 (456)
T 3lc0_A 116 KGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL 176 (456)
T ss_dssp SCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT
T ss_pred cCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc
Confidence 257999999999999998899999999999998753 245666666666543
No 25
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.06 E-value=1.1e-10 Score=101.57 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=80.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCceeeeccccccc----cccccCC--Cceecccc---------------ccceeee
Q 030343 4 VEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAAAR--PFVTHHND---------------LNMKLYM 62 (179)
Q Consensus 4 ~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~~~--~f~~~~~~---------------~~~~~~L 62 (179)
+....-.+++..+.+.+++.|...||.||.||++... .+|...+ .|.. .+. .|+.+.|
T Consensus 20 D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~-~d~~~~g~~~~~~~~~~~~g~~l~L 98 (465)
T 3net_A 20 EFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGL-EPILPPNRQAEKDKSGDTGSEARAL 98 (465)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEE-EEEC----------------CCEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEE-ecccccccccccccccCCCCCEEEe
Confidence 4455677899999999999999999999999999753 1222222 3332 233 1577888
Q ss_pred eechhhhhhhhhh------ccchheeecccccccccCCCCCCCCcchhhHHHhhcc--hh----HHHHHHHHHHHh
Q 030343 63 RIAPELYLKELVV------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD--YN----DLMELTEKMLSG 126 (179)
Q Consensus 63 ~~S~ql~~~~~~~------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~--~~----~lm~~~e~li~~ 126 (179)
+.-.....-++++ ...-|.|++|||||.|+++..|..||+|+++|+.+.+ .. |++.++-++++.
T Consensus 99 Rpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 99 KFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp CSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 8444433333332 1246999999999999999999999999999998853 22 567766666654
No 26
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=101.83 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=81.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccccCCCceeccccccceeeeeechhhhhhhhhhc-
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG- 76 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~- 76 (179)
++..-.-.++|..|.+.+|+.|...||.||.||++.... .|...+......+..|+.+.|+.-.....-+.++.
T Consensus 74 ~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~ 153 (517)
T 4g85_A 74 RDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMN 153 (517)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhC
Confidence 344556688999999999999999999999999998631 22222332223456678888885333333333321
Q ss_pred --cchheeecccccccccCC--CCCCCCcchhhHHHhhc-c----hhHHHHHHHHHHH
Q 030343 77 --GLDRVYEIGKQFRNEGID--LTHNPEFTTCEFYMAFA-D----YNDLMELTEKMLS 125 (179)
Q Consensus 77 --~~~kvf~i~~~fR~E~~~--~~Hl~EF~~le~e~~~~-~----~~~lm~~~e~li~ 125 (179)
..-|.|+||+|||.|+++ ..|..||+|+++|+.+. + -.|++.++-++++
T Consensus 154 ~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~ 211 (517)
T 4g85_A 154 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILS 211 (517)
T ss_dssp TCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHH
Confidence 246999999999999874 46999999999999874 2 2355665555554
No 27
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.04 E-value=3.4e-10 Score=97.50 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=86.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccc--cCCCceeccccccceeeeeechhhhhhhhhhc-
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGA--AARPFVTHHNDLNMKLYMRIAPELYLKELVVG- 76 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~--~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~- 76 (179)
..-.-.+++..|.+.+|+.|...||.||.||++.+.. .|. ..+.|.. .+..|+.+.|+.-.....-+..+.
T Consensus 15 ~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~-~D~~g~~l~LrPd~t~~~aR~~~~~ 93 (434)
T 1wu7_A 15 FYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSR 93 (434)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEE-ECCCCCEEEeCCCChHHHHHHHHhc
Confidence 3456688999999999999999999999999998741 121 1233432 355678888885444443333331
Q ss_pred ----cchheeecccccccccCCCCCCCCcchhhHHHhhcch----hHHHHHHHHHHH
Q 030343 77 ----GLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADY----NDLMELTEKMLS 125 (179)
Q Consensus 77 ----~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~----~~lm~~~e~li~ 125 (179)
..-|.|+||+|||.|+++..+..||+|+++|+.+.+- .+++.++.++++
T Consensus 94 ~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~ 150 (434)
T 1wu7_A 94 KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILD 150 (434)
T ss_dssp TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHH
Confidence 2479999999999998888899999999999988642 344444444444
No 28
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.04 E-value=2.5e-10 Score=98.81 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=82.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccccCCCceeccccccceeeeeechhhhhhhhhhc-
Q 030343 3 NVEVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVG- 76 (179)
Q Consensus 3 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~- 76 (179)
++....-.+++..|.+.+|+.|...||.||.||++.... .|...+......+..|+.+.|+.-.....-+.++.
T Consensus 21 ~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR~~~~~ 100 (464)
T 4g84_A 21 RDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMN 100 (464)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhc
Confidence 344556678999999999999999999999999997631 22222332223456678888885333222233321
Q ss_pred --cchheeecccccccccCC--CCCCCCcchhhHHHhhc-c----hhHHHHHHHHHHH
Q 030343 77 --GLDRVYEIGKQFRNEGID--LTHNPEFTTCEFYMAFA-D----YNDLMELTEKMLS 125 (179)
Q Consensus 77 --~~~kvf~i~~~fR~E~~~--~~Hl~EF~~le~e~~~~-~----~~~lm~~~e~li~ 125 (179)
..-|.|++|++||.|+++ ..+..||+|+++|+.+. + -.|++.++-++++
T Consensus 101 ~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~ 158 (464)
T 4g84_A 101 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILS 158 (464)
T ss_dssp TCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHH
Confidence 246999999999999874 46999999999999873 2 2356665555554
No 29
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.02 E-value=2.4e-10 Score=97.04 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----cc-cc--CCCceeccccccceeeeeechhhhhhhhhh--
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GG-AA--ARPFVTHHNDLNMKLYMRIAPELYLKELVV-- 75 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~-~~--~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~-- 75 (179)
..-.-.+++..+.+.+++.|...||.||.||++.... ++ .. .+.|. ..+..|+.+.|+.-.....-++++
T Consensus 32 ~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~-~~D~~g~~l~LRpd~T~~~aR~~~~~ 110 (373)
T 3rac_A 32 GYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIR-LFDGGGDAVALRPEMTPSIARMAAPR 110 (373)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCB-CCCCSSSCEEECSSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEE-EECCCCCEEEECCcCHHHHHHHHHhc
Confidence 3445678899999999999999999999999998641 22 21 23333 235567788888443333323322
Q ss_pred ----ccchheeecccccccccC------CCCCCCCcchhhHHHhhcc-----hhHHHHHHHHHHHh
Q 030343 76 ----GGLDRVYEIGKQFRNEGI------DLTHNPEFTTCEFYMAFAD-----YNDLMELTEKMLSG 126 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~------~~~Hl~EF~~le~e~~~~~-----~~~lm~~~e~li~~ 126 (179)
...-|.|++|+|||.|.+ +..|..||+|+++|+.+.+ -.|++.++.++++.
T Consensus 111 ~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 111 VAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp HHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 235799999999999998 6789999999999998754 13555555555543
No 30
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.02 E-value=1.7e-10 Score=98.75 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCceeeecccccccc------cccc----CCCceeccccccceeeeeechhhhhhhhhh
Q 030343 6 VRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA------GGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 6 ~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~------~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~ 75 (179)
.-.-.+++..|.+.+++.|...||.||.||++.+.. ||+. .+.|.. .+..|+.++|+.-.....-++++
T Consensus 12 ~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~-~D~~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF-KDKGDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE-CHHHHCCEEECSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE-EcCCCCEEEeCCCChHHHHHHHH
Confidence 345678999999999999999999999999998731 2321 122332 23456788888444333322221
Q ss_pred --------ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 76 --------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 76 --------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
...-|+|++|+|||+|.++..|..||+|+|+|..+.+ -.+++.++.++++.
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~ 153 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHH
Confidence 2357999999999999888889999999999998754 24666666666553
No 31
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.01 E-value=2e-10 Score=100.15 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----c-cc-c----CCCceeccccc-cceeeeeechhhhhhhh
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----G-GA-A----ARPFVTHHNDL-NMKLYMRIAPELYLKEL 73 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~-~~-~----~~~f~~~~~~~-~~~~~L~~S~ql~~~~~ 73 (179)
..-.-.+++..|.+.+++.|...||.||.||++.... + |. . .+.|.. .+.. |+.+.|+.-.....-++
T Consensus 41 ~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~-~D~~~g~~l~LRPd~t~~~ar~ 119 (467)
T 4e51_A 41 ILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF-VDALNGENLTLRPENTAAVVRA 119 (467)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE-ECTTTCCEEEECSCSHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE-ecCCCCCEEEeCcccHHHHHHH
Confidence 3445678999999999999999999999999998642 1 32 1 233432 3445 77888884443333333
Q ss_pred hh------ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 74 VV------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 74 ~~------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
++ ...-|.|++|+|||+|.++..+..||+|+++|+.+.+ -.+++.++.++++.
T Consensus 120 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 120 AIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp HHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 22 1257999999999999988889999999999998753 24555555555543
No 32
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.00 E-value=7e-11 Score=97.24 Aligned_cols=159 Identities=9% Similarity=0.180 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHhhc-----cCCceeeecccccccccc------ccCCCceeccc-cccceeeeeechhhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLD-----NLDFLEVETPMMNMIAGG------AAARPFVTHHN-DLNMKLYMRIAPELYLKELVV 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~-----~~gF~ev~tP~l~~~~~~------~~~~~f~~~~~-~~~~~~~L~~S~ql~~~~~~~ 75 (179)
.-++....++..+++||. +.|+++|.+|++.....| +..++...... ..+..+-+.+|...|+++++.
T Consensus 3 ~~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~ 82 (330)
T 12as_A 3 TAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLG 82 (330)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHH
Confidence 345677888999999999 899999999999874322 12455543221 126778889999999998876
Q ss_pred c-cc---hheeeccccccccc--CCCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhhhhhhhccee---EEecCCCCCC
Q 030343 76 G-GL---DRVYEIGKQFRNEG--IDLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGMIKEITGSYK---IKYHASGLDK 146 (179)
Q Consensus 76 ~-~~---~kvf~i~~~fR~E~--~~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~---~~~~~~~~~~ 146 (179)
. ++ +++|+-+++.|.|. .|.+|+.+|.|.|||.+....+..++.++++++.+...+..... ..| .
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y-~----- 156 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEF-G----- 156 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS-C-----
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----
Confidence 4 46 99999999999865 46799999999999999988888999999998888887765322 112 1
Q ss_pred CceEeccCCCcccchhhhccceeeeecC
Q 030343 147 DPIEIDFTPPFRSLNFIYSCKWYKIYHP 174 (179)
Q Consensus 147 ~~~~~~~~~pf~rity~eAi~~l~~d~p 174 (179)
+...+..++..||.+|..++|....|
T Consensus 157 --l~p~Lp~~i~fitsqeL~~~YP~lt~ 182 (330)
T 12as_A 157 --LAPFLPDQIHFVHSQELLSRYPDLDA 182 (330)
T ss_dssp --CCCCSCSSCEEEEHHHHHHHSSSSCH
T ss_pred --cCcCCCCceEEEeHHHHHHHcCCCCh
Confidence 11124678999999999998865543
No 33
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.00 E-value=1.9e-10 Score=95.92 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc---------ccccCCCceeccccccceeeee--echhhhhhhhhhc--cch
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA---------GGAAARPFVTHHNDLNMKLYMR--IAPELYLKELVVG--GLD 79 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~---------~~~~~~~f~~~~~~~~~~~~L~--~S~ql~~~~~~~~--~~~ 79 (179)
-+.+.+.||++|...||.|+.+|.+.+.. .++.++... +..+.+....|| +||.+. +.++. ...
T Consensus 109 ~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~-dt~~i~e~~vLRThtsp~~l--r~l~~~~~pi 185 (327)
T 3pco_A 109 VTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADH-DTFWFDTTRLLRTQTSGVQI--RTMKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHT-TCCBSSSSCEECSCTHHHHH--HHHTTCCSSC
T ss_pred HHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhccc-ccEEeCCCceecccCCHHHH--HHHHhCCCCe
Confidence 46788999999999999999999987642 122111110 012233445666 555553 24443 346
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhh--cchhHHHHHHHHHHHhhhh
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYNDLMELTEKMLSGMIK 129 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~lm~~~e~li~~~~~ 129 (179)
|+|++|+|||.+ .+.+|+++|+|+|+.+++ .++.++..+++.+++.++.
T Consensus 186 rifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 186 RIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp CBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999998 688999999999987765 4799999999999998865
No 34
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.99 E-value=5.1e-10 Score=95.88 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=86.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----c-ccc-----CCCceeccccccceeeeeechhhhhhhhh
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----G-GAA-----ARPFVTHHNDLNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~-~~~-----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~ 74 (179)
..-.-.+++..|.+.+|+.|...||.||.||++.+.. + |.. .+.|.. .+..|+.+.|+.-.....-+..
T Consensus 13 ~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~aR~~ 91 (423)
T 1htt_A 13 YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF-EDRNGDSLTLRPEGTAGCVRAG 91 (423)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE-ECTTSCEEEECSCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE-EcCCCCEEEeCCCchHHHHHHH
Confidence 3456678999999999999999999999999998741 1 221 134442 3556788888854333333332
Q ss_pred h------ccchheeecccccccccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHHh
Q 030343 75 V------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLSG 126 (179)
Q Consensus 75 ~------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~~ 126 (179)
+ ...-|.|+||++||.|+++..+..||+|+++|..+.+ ..+++.++.++++.
T Consensus 92 ~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~ 153 (423)
T 1htt_A 92 IEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRA 153 (423)
T ss_dssp HHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHH
Confidence 2 2257999999999999888889999999999998864 23555555555543
No 35
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.99 E-value=8e-10 Score=94.62 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCceeeecccccccc----c-ccc-----CCCceeccccccceeeeeechhhhhhhhh
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----G-GAA-----ARPFVTHHNDLNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~-~~~-----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~ 74 (179)
....-.+++..|.+.+|+-|...||.||.||++.+.. + |.. .+.|.. .+..|+.+.|+.-.....-+..
T Consensus 12 ~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~ar~~ 90 (421)
T 1h4v_B 12 LFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF-QDRGGRSLTLRPEGTAAMVRAY 90 (421)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE-ECCCCCEEeeCCcchHHHHHHH
Confidence 3456678999999999999999999999999998741 1 221 123332 3556788888844333333332
Q ss_pred h-------ccchheeecccccccccCCCCCCCCcchhhHHHhhcch----hHHHHHHHHHHH
Q 030343 75 V-------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADY----NDLMELTEKMLS 125 (179)
Q Consensus 75 ~-------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~~~----~~lm~~~e~li~ 125 (179)
+ ...-|.|+||++||.|+++..+..||+|+++|..+.+- .+++.++.++++
T Consensus 91 ~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~ 152 (421)
T 1h4v_B 91 LEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLK 152 (421)
T ss_pred HhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHH
Confidence 2 12479999999999998888899999999999988542 244444444443
No 36
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.96 E-value=5.9e-10 Score=96.82 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeech-----hhhhhhh
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAP-----ELYLKEL 73 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~-----ql~~~~~ 73 (179)
-.-.+++..|.+.+|+.|...||.||.||++.+.. +|. ..+.|.. .+..++.++|+... .++...+
T Consensus 64 P~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~-~d~~~~~~~LrPt~ee~t~~i~r~~~ 142 (458)
T 2i4l_A 64 PLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI-ADRHKRELLYGPTNEEMITEIFRAYI 142 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE-ECTTCCEEEECSCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE-EeCCCCeEEECCCChHHHHHHHHHHH
Confidence 34578999999999999999999999999998742 232 1223332 34557888998632 2222211
Q ss_pred h--hccchheeecccccccc-cCCCC--CCCCcchhhHHHhhcchhH
Q 030343 74 V--VGGLDRVYEIGKQFRNE-GIDLT--HNPEFTTCEFYMAFADYND 115 (179)
Q Consensus 74 ~--~~~~~kvf~i~~~fR~E-~~~~~--Hl~EF~~le~e~~~~~~~~ 115 (179)
. ....-|+|+||+|||+| ..+.. +..||+|.|+|..+.+..+
T Consensus 143 ~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ 189 (458)
T 2i4l_A 143 KSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAG 189 (458)
T ss_dssp CBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHH
T ss_pred hhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHH
Confidence 1 12347999999999999 55555 9999999999997755443
No 37
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.94 E-value=8.9e-10 Score=96.55 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccCCceeeec-cccccc---------cccccCCC----ceecccc---------------------c-
Q 030343 13 RSKIVSYIRRFLDNLDFLEVET-PMMNMI---------AGGAAARP----FVTHHND---------------------L- 56 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~t-P~l~~~---------~~~~~~~~----f~~~~~~---------------------~- 56 (179)
.+.+.+.||++|...||.|+.| |.+.++ |.+++++. |.+.... +
T Consensus 227 l~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 227 LLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccC
Confidence 4678899999999999999875 887763 33344332 3221100 0
Q ss_pred ------------cceeeeeechhhhhhhhhh-------ccchheeecccccccccCCCCCCCCcchhhHHHhh--cchhH
Q 030343 57 ------------NMKLYMRIAPELYLKELVV-------GGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF--ADYND 115 (179)
Q Consensus 57 ------------~~~~~L~~S~ql~~~~~~~-------~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~--~~~~~ 115 (179)
+....||++.--.+-+.++ ...-|+|+||+|||+|..+.+|+++|+|+|+.+++ .++.+
T Consensus 307 s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~d 386 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGH 386 (508)
T ss_dssp BCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHH
T ss_pred CccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHH
Confidence 0245666443222212232 13569999999999999999999999999998776 37999
Q ss_pred HHHHHHHHHHhh
Q 030343 116 LMELTEKMLSGM 127 (179)
Q Consensus 116 lm~~~e~li~~~ 127 (179)
++.+++.+++.+
T Consensus 387 LKg~Le~~l~~l 398 (508)
T 3l4g_A 387 LMGVLREFFTKL 398 (508)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 999999998875
No 38
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.91 E-value=1e-09 Score=93.67 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh---
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|. ....|. .+..+..++|+.......-++++
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~--~d~~~~~~~LrP~~~~~~~~~~~~~~ 104 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGL 104 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE--EEETTEEEEECSCSHHHHHHHHTSSC
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe--EecCCceEEEcCCCCHHHHHHHHhhh
Confidence 34578999999999999999999999999998742 232 112333 24457788998665544332222
Q ss_pred ----ccchheeecccccccccC--CCC--CCCCcchhhHHHhhcchhHHHH
Q 030343 76 ----GGLDRVYEIGKQFRNEGI--DLT--HNPEFTTCEFYMAFADYNDLME 118 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~--~~~--Hl~EF~~le~e~~~~~~~~lm~ 118 (179)
...-|+|++|+|||+|.+ ... +..||+|.|++. +.+.++...
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~ 154 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRD 154 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHH
Confidence 124799999999999996 344 999999999996 444444333
No 39
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.82 E-value=4e-09 Score=93.77 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhh-----hhhhh
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPEL-----YLKEL 73 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql-----~~~~~ 73 (179)
-.-.+++..|.+.+|+.|.+.||.||.||++.+.. +|+ ..+.|.. .+..++.++|+....- +...+
T Consensus 44 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~-~d~~~~~~~LrP~~~~~~~~~~~~~~ 122 (572)
T 2j3l_A 44 PLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL-KDRNDRDYILGPTHEETFTELIRDEI 122 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE-ECTTCCEEEECSCCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE-ecCCCCeEEEccccHHHHHHHHHhhc
Confidence 34578999999999999999999999999998742 232 1233332 3445788999844432 22211
Q ss_pred h--hccchheeecccccccccCC-CC--CCCCcchhhHHHhhcchhHHH
Q 030343 74 V--VGGLDRVYEIGKQFRNEGID-LT--HNPEFTTCEFYMAFADYNDLM 117 (179)
Q Consensus 74 ~--~~~~~kvf~i~~~fR~E~~~-~~--Hl~EF~~le~e~~~~~~~~lm 117 (179)
. ....-|+|++|+|||+|.++ .. +..||+|.|++..+.+-.+..
T Consensus 123 ~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 123 NSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp CBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred cChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHH
Confidence 1 12347999999999999984 33 899999999998776443333
No 40
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.80 E-value=4.8e-09 Score=91.65 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechhh-----h
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPEL-----Y 69 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql-----~ 69 (179)
.-.+++..|.+.+|+.|.+.||.||.||++.+.. +|+. .+.|.+ .+.. +..++|+..... +
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~-~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVV-THAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEE-EEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEE-ECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 4578899999999999999999999999998742 3321 122322 2222 578899855442 3
Q ss_pred hhhhhh--ccchheeecccccccccCCCC--CCCCcchhhHHHhhcchhHHHHHHHHH
Q 030343 70 LKELVV--GGLDRVYEIGKQFRNEGIDLT--HNPEFTTCEFYMAFADYNDLMELTEKM 123 (179)
Q Consensus 70 ~~~~~~--~~~~kvf~i~~~fR~E~~~~~--Hl~EF~~le~e~~~~~~~~lm~~~e~l 123 (179)
.+.+.+ ...-|+|+||+|||+|..... +..||+|.|++..+.+.++....+..+
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 322111 234799999999999965445 999999999999887655555444444
No 41
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.77 E-value=9.9e-09 Score=89.23 Aligned_cols=112 Identities=20% Similarity=0.133 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechhhhhhhh
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPELYLKEL 73 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql~~~~~ 73 (179)
-.-.+++..|.+.+|+.|.+.||.||.||++.+.. .|.. .+.|.+ .+.. +..++|+.......-++
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~-~d~g~~~~~~~l~LRP~~~~~i~~~ 113 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWV-THGGKTQLDVKLALRPTSETPIYYM 113 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEE-EESSSSEEEEEEEECSSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEE-eccCcccCCCeeEECCCCcHHHHHH
Confidence 35578899999999999999999999999998742 2321 122322 2222 67889985554433222
Q ss_pred hh-------ccchheeecccccccccC-CCC--CCCCcc-hhhHHHhhcchhHHHHH
Q 030343 74 VV-------GGLDRVYEIGKQFRNEGI-DLT--HNPEFT-TCEFYMAFADYNDLMEL 119 (179)
Q Consensus 74 ~~-------~~~~kvf~i~~~fR~E~~-~~~--Hl~EF~-~le~e~~~~~~~~lm~~ 119 (179)
++ ...-|+|++|+|||+|.+ ... +..||+ |.|++..+++..+....
T Consensus 114 ~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e 170 (459)
T 1nj8_A 114 MKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQ 170 (459)
T ss_dssp HHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHH
T ss_pred HHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHH
Confidence 22 124699999999999998 555 999999 99999877765444443
No 42
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.77 E-value=6e-09 Score=94.02 Aligned_cols=103 Identities=16% Similarity=0.055 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceecccccc-ceeeeeechhhhhhhhhh--
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLN-MKLYMRIAPELYLKELVV-- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~-~~~~L~~S~ql~~~~~~~-- 75 (179)
..-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|+. ...|.. .+..+ +.++|+.-.....-++.+
T Consensus 268 P~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~-~d~~~~~~~~LrP~~~~~~~~~~~~~ 346 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP-MQLDETESMVLRPMNCPHHMMIYANK 346 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC-EEETTTEEEEECSSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee-EecCCCeEEEeCCCCCHHHHHHHHhh
Confidence 34578999999999999999999999999998742 2321 233332 23346 788898544333322222
Q ss_pred -----ccchheeecccccccccCCC--C--CCCCcchhhHHHhh
Q 030343 76 -----GGLDRVYEIGKQFRNEGIDL--T--HNPEFTTCEFYMAF 110 (179)
Q Consensus 76 -----~~~~kvf~i~~~fR~E~~~~--~--Hl~EF~~le~e~~~ 110 (179)
..+-|+|+||+|||+|.++. . +..||+|.|+++-+
T Consensus 347 ~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~ 390 (645)
T 1nyr_A 347 PHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFV 390 (645)
T ss_dssp CCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEE
T ss_pred hhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEc
Confidence 12479999999999999863 3 88999999999844
No 43
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=98.76 E-value=7.3e-09 Score=90.24 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccccceeeeeechhhhh-----hhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLNMKLYMRIAPELYL-----KELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~-----~~~~ 74 (179)
.-.+++..|.+.+++.|...||.||.||+|.+.. +|+. .+.|.. +..+..++|+....... +.+.
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~ 124 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVA 124 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhh
Confidence 4578899999999999999999999999998742 3321 122332 44577889984443322 2111
Q ss_pred h-----ccchheeecccccccccCC--CC--CCCCcchhhHHHhhc
Q 030343 75 V-----GGLDRVYEIGKQFRNEGID--LT--HNPEFTTCEFYMAFA 111 (179)
Q Consensus 75 ~-----~~~~kvf~i~~~fR~E~~~--~~--Hl~EF~~le~e~~~~ 111 (179)
. ...-|+|++|+|||+|.++ .. +..||+|.|++..+.
T Consensus 125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~ 170 (471)
T 3a32_A 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP 170 (471)
T ss_dssp HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE
T ss_pred hccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC
Confidence 1 2357999999999999977 55 999999999998753
No 44
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.72 E-value=1.5e-08 Score=87.32 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccccceeeeeechhhhhhhh-----h
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLNMKLYMRIAPELYLKEL-----V 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~-----~ 74 (179)
.-.+++..|.+.+++.+.+.||.||.||+|.... +|.. ...|.+ .+..++|+...+...-.+ +
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~~~~l~LrPt~e~~i~~~~~~~i~ 245 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC----ERDNLYLIPTAEVPLTNLYREEIL 245 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC----TTTCCEECSSTHHHHHGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe----cCCeEEEcCCCcHHHHHHHHhhcc
Confidence 4567899999999999999999999999998742 2221 122221 256788885544332222 2
Q ss_pred h--ccchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 75 V--GGLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 75 ~--~~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
. ...-|+|++|+|||+|..+ + .+..||+|+|.+... .-++..+..++++
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~-~pe~s~~~~~e~i 303 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIV-HPDTSYDELEKLV 303 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEE-CGGGHHHHHHHHH
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEEC-CHHHHHHHHHHHH
Confidence 1 1257999999999999854 1 389999999996633 3333443333333
No 45
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.68 E-value=1.8e-08 Score=90.91 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh---
Q 030343 7 RQIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 7 ~~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
-.-.+++..|.+.+|+.+.+.||.||.||+|.+.. .|+ ....|. .+..++.++|+.......-++.+
T Consensus 268 P~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~ 345 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGL 345 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhh
Confidence 34578999999999999999999999999998742 332 122333 23446788898544332222222
Q ss_pred ----ccchheeecccccccccCC--CC--CCCCcchhhHHHhhcchhHHHH
Q 030343 76 ----GGLDRVYEIGKQFRNEGID--LT--HNPEFTTCEFYMAFADYNDLME 118 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~~--~~--Hl~EF~~le~e~~~~~~~~lm~ 118 (179)
.-.-|+|++|+|||+|.++ .. +..||+|.|+++ +.+.+++..
T Consensus 346 ~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~ 395 (642)
T 1qf6_A 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRD 395 (642)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred hhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHH
Confidence 1246999999999999983 34 999999999998 444344333
No 46
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.66 E-value=3.2e-08 Score=86.06 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHhh-ccCCceeeecccccccc----cccc----CCCceecccc--ccceeeeeechhhhhhhhhhc
Q 030343 8 QIFKTRSKIVSYIRRFL-DNLDFLEVETPMMNMIA----GGAA----ARPFVTHHND--LNMKLYMRIAPELYLKELVVG 76 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff-~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~--~~~~~~L~~S~ql~~~~~~~~ 76 (179)
.-.+++..|.+.+++.+ .+.||.||.||+|.+.. +|.. .+.|.+ .+. .+..++|+.......-.+.+.
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~-~d~~~~~~~l~LrPt~~~~~~~~~~~ 140 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKV-ETTDEEKEEYGLKPMNCPGHCLIFGK 140 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEE-CC------CEEECSCSHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEE-ecCCCCCceEEEcccCcHHHHHHHHh
Confidence 45788999999999999 99999999999998742 2321 122322 111 256788885443332222221
Q ss_pred -------cchheeecccccccccCC--CC--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 77 -------GLDRVYEIGKQFRNEGID--LT--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 77 -------~~~kvf~i~~~fR~E~~~--~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
-.-|+|++|+|||+|..+ .. +..||+|.|.+. +++-++..+.+++++
T Consensus 141 ~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i 198 (460)
T 3uh0_A 141 KDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSL 198 (460)
T ss_dssp SCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHH
T ss_pred ccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHH
Confidence 146899999999999986 44 999999999986 444444444444333
No 47
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.64 E-value=2.3e-08 Score=87.87 Aligned_cols=115 Identities=23% Similarity=0.222 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccc----cCCCceecccc----ccceeeeeechhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGA----AARPFVTHHND----LNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~----~~~~f~~~~~~----~~~~~~L~~S~ql~~~~~~ 74 (179)
.-.+++..|.+.+++.|.+ ||.||.||+|.+.. .|. ..+.|.+ .+. .+..++|+...+..+-.+.
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~-~d~g~~~~~~~l~LrPt~e~~i~~~~ 146 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWV-THGGLSKLQRKLALRPTSETVMYPMF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEE-EEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEE-ecCCCcccCCeeEEccCCCHHHHHHH
Confidence 4568899999999999999 99999999998742 221 1233432 122 1567899855544332222
Q ss_pred h-------ccchheeecccccccccC-CCC--CCCCcc-hhhHHHhhcchhHHHHHHHHHH
Q 030343 75 V-------GGLDRVYEIGKQFRNEGI-DLT--HNPEFT-TCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 75 ~-------~~~~kvf~i~~~fR~E~~-~~~--Hl~EF~-~le~e~~~~~~~~lm~~~e~li 124 (179)
+ ...-|+|++|+|||+|.. ... +..||+ |.|++..+++.++....+++++
T Consensus 147 ~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l 207 (501)
T 1nj1_A 147 ALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAV 207 (501)
T ss_dssp HHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHH
Confidence 2 124799999999999998 445 999999 9999887776555555544443
No 48
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=98.59 E-value=2.1e-08 Score=81.69 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=69.5
Q ss_pred HHHHHH--HhhccCCceeeeccccccccccccCCCceeccccccceeeeee--chhhhhhhhhh-c-cchheeecccccc
Q 030343 16 IVSYIR--RFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRI--APELYLKELVV-G-GLDRVYEIGKQFR 89 (179)
Q Consensus 16 i~~~ir--~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~--S~ql~~~~~~~-~-~~~kvf~i~~~fR 89 (179)
+.+.+| +.|...||.||.||++....-=.. +.| .+..|+.+.|+. .|.+....+-. . ..-|.|++|+|||
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f---~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF---LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE---EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc---CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEe
Confidence 455566 999999999999999987421111 233 244677888882 22333221111 2 4579999999999
Q ss_pred cccCCCCCCCCcchhhHHHhhcc----hhHHHHHHHHHHH
Q 030343 90 NEGIDLTHNPEFTTCEFYMAFAD----YNDLMELTEKMLS 125 (179)
Q Consensus 90 ~E~~~~~Hl~EF~~le~e~~~~~----~~~lm~~~e~li~ 125 (179)
.|.++. .||+|+++|+.+.+ -.|++.++-++++
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~ 118 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESAS 118 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred cCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHH
Confidence 999887 89999999998853 2455555555554
No 49
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.58 E-value=7.4e-08 Score=82.92 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----cccccCCCceecc-ccccceeeeeechhhhhhhhhh-------
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAAARPFVTHH-NDLNMKLYMRIAPELYLKELVV------- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~~~~f~~~~-~~~~~~~~L~~S~ql~~~~~~~------- 75 (179)
.-.+++..|.+.+++.+.+.||.||.||+|.+. .+|.. ..|.... ..-+..++|+...+..+-.++.
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~-~~f~~emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~ 242 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHF-PAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYE 242 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCT-TTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCC-CcCchhcEEEcCCeEEEeecCcHHHHHHhcccccCch
Confidence 456889999999999999999999999999874 12321 1121100 0114578888655544432322
Q ss_pred ccchheeecccccccccC-----CCC--CCCCcchhhHHHhhcc-hhHHHHHHHHHH
Q 030343 76 GGLDRVYEIGKQFRNEGI-----DLT--HNPEFTTCEFYMAFAD-YNDLMELTEKML 124 (179)
Q Consensus 76 ~~~~kvf~i~~~fR~E~~-----~~~--Hl~EF~~le~e~~~~~-~~~lm~~~e~li 124 (179)
...-|+|++|+|||+|.. ... +..||+|+|.+....+ .++.....++++
T Consensus 243 ~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 243 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred hCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 124799999999999952 233 8999999998654332 244444334433
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.55 E-value=5.7e-08 Score=84.41 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeeccccccc----ccccc----CCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMI----AGGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
.-.+++..|.+.+++.+.+.||.||.||.|.+. .+|.. ...|.+ -+..+||+...+..+-.+..
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~d~~l~LrPt~e~~~~~~~~~~~~ 266 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV----EDEDLYLIPTAEHPLAGMHANEIL 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBB----TTSSCEECSSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCee----cCCcEEEcCcCcHHHHHHHHhCcc
Confidence 456789999999999999999999999999874 23321 122221 14578888555444332222
Q ss_pred ---ccchheeecccccccccCCC-------CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 76 ---GGLDRVYEIGKQFRNEGIDL-------THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~~~-------~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
...-|+|++|+|||+|.... .+..||+|.|.. .+++-++..+..++++.
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~ 325 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIR 325 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHH
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHH
Confidence 22479999999999999632 289999999997 45444555555555443
No 51
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=98.53 E-value=4.9e-08 Score=86.00 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----ccc----cCCCceecccc----ccceeeeeechhhhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGA----AARPFVTHHND----LNMKLYMRIAPELYLKELV 74 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~----~~~~f~~~~~~----~~~~~~L~~S~ql~~~~~~ 74 (179)
.-.+++..|.+.+++.+.+.||.||.||+|.+.. .|. ..+.|.+. +. .+.+++|+..++...-.+.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~-d~g~~~~~~~l~LrPt~e~~i~~~~ 131 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVE-KGGLQPLEERLALRPTSETAIYSMF 131 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEE-EETTEEEEEEEEECSSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEe-cCCCcccCcceeECCCCcHHHHHHH
Confidence 4578899999999999999999999999998642 121 12233321 21 2568899855433222221
Q ss_pred h-------ccchheeeccccccccc-CCCC--CCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 75 V-------GGLDRVYEIGKQFRNEG-IDLT--HNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 75 ~-------~~~~kvf~i~~~fR~E~-~~~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
+ .-+-|+|++|+|||+|. .... +..||+|.|.+..+++.++....++.++.
T Consensus 132 ~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~ 192 (518)
T 3ial_A 132 SKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWK 192 (518)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHH
Confidence 1 22479999999999994 4444 99999999999987777777766666653
No 52
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.52 E-value=8.7e-08 Score=84.46 Aligned_cols=116 Identities=15% Similarity=0.020 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc-----cccc----CCCceeccccc----cceeeeeechhhh-----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GGAA----ARPFVTHHNDL----NMKLYMRIAPELY----- 69 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~~~----~~~f~~~~~~~----~~~~~L~~S~ql~----- 69 (179)
.-.+++..|.+.+++.+.+.||.||.||+|.+.. .|+. .+.|.+ .+.. +.+++|+...+..
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~-~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWV-TRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEE-EEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEE-eccCCcccccceeeCCCCcHHHHHHH
Confidence 4568899999999999999999999999998642 2321 112221 1111 2358887444332
Q ss_pred hhhhhh--ccchheeecccccccccCC-CC--CCCCcchhhHHHhhcchhHHHHHHHHHH
Q 030343 70 LKELVV--GGLDRVYEIGKQFRNEGID-LT--HNPEFTTCEFYMAFADYNDLMELTEKML 124 (179)
Q Consensus 70 ~~~~~~--~~~~kvf~i~~~fR~E~~~-~~--Hl~EF~~le~e~~~~~~~~lm~~~e~li 124 (179)
...+.+ ..+-|+|++|+|||.|..+ .. +..||+|.|.+..+++.++....++.++
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l 197 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQIL 197 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHH
Confidence 221111 2257999999999999543 34 9999999999988877666665555544
No 53
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.52 E-value=9.3e-08 Score=82.15 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhccC--------Cceeeec-cccccc---------cccccCCCceeccccccceeeeee--chhhhhhhh
Q 030343 14 SKIVSYIRRFLDNL--------DFLEVET-PMMNMI---------AGGAAARPFVTHHNDLNMKLYMRI--APELYLKEL 73 (179)
Q Consensus 14 s~i~~~ir~ff~~~--------gF~ev~t-P~l~~~---------~~~~~~~~f~~~~~~~~~~~~L~~--S~ql~~~~~ 73 (179)
+.+.+.||++|... ||.|+.+ |.+++. |.++.++... +..|.+...-||+ ||.+. ++
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~-Dtfyi~~~~vLRThts~~~~--~~ 127 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKG-DNYYLNRTHMLRAHTSAHQW--DL 127 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGG-GSCBSSSSEEECSSGGGGHH--HH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCccccc-ceEEecCCeEEcCCCcHHHH--HH
Confidence 66788888888887 9999999 777653 2333333332 1234566677874 45444 34
Q ss_pred hhccchheeecccccccccCCCCCCCCcchhhHHHhh-------------------------------------cchhHH
Q 030343 74 VVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAF-------------------------------------ADYNDL 116 (179)
Q Consensus 74 ~~~~~~kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~-------------------------------------~~~~~l 116 (179)
+..+..|+|++|.|||.+..++.|.++|+|+|.-..| ..+.|+
T Consensus 128 l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dl 207 (415)
T 3cmq_A 128 LHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDL 207 (415)
T ss_dssp HHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHH
T ss_pred HHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceeccccccceEEEEEecCcccccccccccccccccHHHH
Confidence 5566679999999999999999999999999843321 124788
Q ss_pred HHHHHHHHHhhhh
Q 030343 117 MELTEKMLSGMIK 129 (179)
Q Consensus 117 m~~~e~li~~~~~ 129 (179)
...++.+++.++.
T Consensus 208 Kg~le~ll~~lfg 220 (415)
T 3cmq_A 208 KQTLTRLMAHLFG 220 (415)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 8888888887644
No 54
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=98.42 E-value=1.5e-07 Score=82.92 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHH-hhccCCceeeeccccccc----ccccc----CCCceec--c--c--------------------
Q 030343 8 QIFKTRSKIVSYIRR-FLDNLDFLEVETPMMNMI----AGGAA----ARPFVTH--H--N-------------------- 54 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~-ff~~~gF~ev~tP~l~~~----~~~~~----~~~f~~~--~--~-------------------- 54 (179)
.-.+++..|.+.+++ ++.+.||.||.||+|.+. .+|.. ...+.+. . +
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 456788999999996 688999999999999874 22321 1222221 0 0
Q ss_pred -----cccceeeeeechhhhhhhhhh-------ccchheee-cccccccccCC--C--CCCCCcchhhHHHhhcchhHHH
Q 030343 55 -----DLNMKLYMRIAPELYLKELVV-------GGLDRVYE-IGKQFRNEGID--L--THNPEFTTCEFYMAFADYNDLM 117 (179)
Q Consensus 55 -----~~~~~~~L~~S~ql~~~~~~~-------~~~~kvf~-i~~~fR~E~~~--~--~Hl~EF~~le~e~~~~~~~~lm 117 (179)
..+..++|+...+...-.+.. .-.-++|+ +|+|||+| ++ . .+..||+|.|.+. +.+.++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHHH
Confidence 024578888554333222221 12468999 99999999 44 2 5999999999988 55666666
Q ss_pred HHHHHHH
Q 030343 118 ELTEKML 124 (179)
Q Consensus 118 ~~~e~li 124 (179)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=98.34 E-value=9e-07 Score=77.65 Aligned_cols=118 Identities=17% Similarity=0.080 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cC-CCceeccccccceeeeeechhhhhhhhhh---
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AA-RPFVTHHNDLNMKLYMRIAPELYLKELVV--- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~-~~f~~~~~~~~~~~~L~~S~ql~~~~~~~--- 75 (179)
...+++.+|.+.+++.+.+.||.||.||.|.+.. +|. .. +.|.+. +..+.++||.-..+..+-.+..
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~-~~~~~~l~L~PTaE~~~~~l~~~~i 295 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNID-PSRFEDLNLAGTAEVGLAGYFMDHS 295 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBC-TTTSSSCEECSSHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEe-cCCCCeEEECCcCcHHHHHHHhhcc
Confidence 4578899999999999999999999999998742 221 11 334331 1124578998666554432222
Q ss_pred ----ccchheeecccccccccC---C---CCCCCCcchhhHHHhhcch-hHHHHHHHHHHHh
Q 030343 76 ----GGLDRVYEIGKQFRNEGI---D---LTHNPEFTTCEFYMAFADY-NDLMELTEKMLSG 126 (179)
Q Consensus 76 ----~~~~kvf~i~~~fR~E~~---~---~~Hl~EF~~le~e~~~~~~-~~lm~~~e~li~~ 126 (179)
.-.-+++++|+|||+|.. + --+..||+|.|......+. ++..+..++++..
T Consensus 296 ~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 296 VAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp EEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 225799999999999975 2 2488999999997644443 5666666666643
No 56
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=98.33 E-value=4.3e-07 Score=79.84 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccc-------cccceeeeeechhhhhhh
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHN-------DLNMKLYMRIAPELYLKE 72 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~-------~~~~~~~L~~S~ql~~~~ 72 (179)
...+++.++.+.+++.+.+.||.||.||.|.+.. .|. ..+.|.+... ..+..+||....+..+-.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 4578899999999999999999999999998742 221 1123333110 013578898655544332
Q ss_pred hhh-------ccchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhH--HHHHHHHHH
Q 030343 73 LVV-------GGLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYND--LMELTEKML 124 (179)
Q Consensus 73 ~~~-------~~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~--lm~~~e~li 124 (179)
+.. .-.-|++++++|||+|... + -+..||+|.|... ++.-++ ..+..++++
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml 345 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMI 345 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHH
Confidence 221 1247899999999999852 2 4889999999964 333222 444444444
No 57
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=98.32 E-value=6.4e-07 Score=78.18 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
...+++.++.+.+++.+.+.||.||.||.|.... +|. ..+.|.+. + .+..+||.-..+..+-.+..
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~-~-~~~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVS-G-DGDKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEE-S-SSSCEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEee-c-CCcceEEeccCcHHHHHHHhcccc
Confidence 4578999999999999999999999999998742 221 11334431 1 14678998665554432222
Q ss_pred ---ccchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhH--HHHHHHHHHH
Q 030343 76 ---GGLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYND--LMELTEKMLS 125 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~--lm~~~e~li~ 125 (179)
.-.-|++++++|||+|... + -+..||+|.|... ++.-++ ..+..++++.
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~ 344 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMIT 344 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHH
Confidence 1147899999999999731 1 4888999999964 443333 5555555554
No 58
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=98.31 E-value=5.4e-07 Score=79.16 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHhhc--cCCceeeeccccccc
Q 030343 8 QIFKTRSKIVSYIRRFLD--NLDFLEVETPMMNMI 40 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~--~~gF~ev~tP~l~~~ 40 (179)
.-.++++.|.+.+|+.|. +.||.||.||+|.+.
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~ 71 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHR 71 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEET
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCH
Confidence 457899999999999999 999999999999874
No 59
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=4.3e-07 Score=80.08 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=44.1
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.-|+|++|+|||.+.. +.+|.+||+|++.-+.+. ++.|+...++.+++.+
T Consensus 217 pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 217 PLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp SEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred CeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4699999999998775 678999999999988884 6999999999999876
No 60
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=98.22 E-value=1.5e-06 Score=76.84 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----cccc----CCCceeccccccceeeeeechhhhhhhhhh----
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAA----ARPFVTHHNDLNMKLYMRIAPELYLKELVV---- 75 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~----~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~---- 75 (179)
.-.+++..+.+.+++.+.+.||.||.||.|.+.. +|.- .+.|.+ -+..+||.-..+..+-.+..
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~----~~~~~~L~PT~E~~~~~l~~~~i~ 348 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI----AETDLYLTGTAEVVLNALHSGEIL 348 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEE----TTTTEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEe----cCCCEEEccCCcHHHHHHHhcccc
Confidence 4578899999999999999999999999998742 2221 122332 13578887555443322221
Q ss_pred ---ccchheeecccccccccC----CC---CCCCCcchhhHHHhhcch--hHHHHHHHHHHHh
Q 030343 76 ---GGLDRVYEIGKQFRNEGI----DL---THNPEFTTCEFYMAFADY--NDLMELTEKMLSG 126 (179)
Q Consensus 76 ---~~~~kvf~i~~~fR~E~~----~~---~Hl~EF~~le~e~~~~~~--~~lm~~~e~li~~ 126 (179)
.-.-|++++|+|||+|.. ++ -+..||+|.|.+. ++.- ++..+..++++..
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLEN 410 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHH
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHH
Confidence 224789999999999973 22 4999999999975 4333 3666666666543
No 61
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=98.21 E-value=2.6e-06 Score=74.30 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccccccceeeeeechhhhhhhhhhc---
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHNDLNMKLYMRIAPELYLKELVVG--- 76 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~--- 76 (179)
...+++.++.+.+++.+.+.||.||.||.|.+.. +|. ..+.|.+. + .+.+.||.-.++..+-.++..
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~-~-~~~~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVI-D-GEDEKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEE-E-TTEEEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEe-C-CCCeEEEeccccHHHHHHHhcccc
Confidence 5578899999999999999999999999998742 221 12334431 1 145778875544433322211
Q ss_pred ------cchheeecccccccccCC----C---CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 77 ------GLDRVYEIGKQFRNEGID----L---THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 77 ------~~~kvf~i~~~fR~E~~~----~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
-.-|++++++|||+|..+ + -+..||+|.|... ++.-++..+..++++.
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~ 321 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIG 321 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHH
Confidence 146899999999999843 2 4889999999976 4444555555555543
No 62
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.20 E-value=4.5e-07 Score=80.88 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=44.4
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
..|+|++|+|||.+.. +.+|.+||+|++.-+.+. ++.|+...++.+++.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4689999999998776 778999999999988884 7999999999999876
No 63
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.19 E-value=4.8e-07 Score=80.82 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=44.4
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
..|+|++|+|||.+.. +.+|.+||+|++.-+.+. ++.|+...++.+++.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4689999999998776 778999999999988884 7999999999999876
No 64
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.18 E-value=5e-07 Score=80.85 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=44.4
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
..|+|++|+|||.+.. +.+|.+||+|++.-+.+. ++.|+...++.+++.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4689999999998776 778999999999988884 7999999999999876
No 65
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.17 E-value=5.6e-07 Score=80.72 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=44.4
Q ss_pred chheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 78 LDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.-|+|++|+|||.+.. +.+|.+||+|++.-+.+. ++.|+...++.+++.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4689999999998776 778999999999988884 7999999999999876
No 66
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.05 E-value=4.4e-06 Score=73.63 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=44.0
Q ss_pred hheeecccccccccC-CCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 79 DRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 79 ~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
.|+|++|+|||.|.. +..|.+||+|+++.+.+. ++.|++..++.+++.+
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 689999999999877 788999999999999884 6999999999999865
No 67
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=97.87 E-value=5.1e-06 Score=75.53 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhhc-cCCceeeeccccccc
Q 030343 8 QIFKTRSKIVSYIRRFLD-NLDFLEVETPMMNMI 40 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~-~~gF~ev~tP~l~~~ 40 (179)
.-.++++.|.+.+|+.|. ..||.||.||+|++.
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 446899999999999998 569999999999873
No 68
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.77 E-value=1.8e-05 Score=66.12 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCceeeecccccccc----ccc----cCCCceeccc-----------------------cc
Q 030343 8 QIFKTRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGA----AARPFVTHHN-----------------------DL 56 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~----~~~~f~~~~~-----------------------~~ 56 (179)
...+++..+.+.+++ -.+.||.||.||.|.+.. .|. ....|.+... ..
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 345788899999999 889999999999997631 221 0122222100 01
Q ss_pred cceeeeeechhhhhhhhhh------ccchheeecccccccccC-CCCCCCCcchhhHHHhhcchhHHHHHHHHHHHhh
Q 030343 57 NMKLYMRIAPELYLKELVV------GGLDRVYEIGKQFRNEGI-DLTHNPEFTTCEFYMAFADYNDLMELTEKMLSGM 127 (179)
Q Consensus 57 ~~~~~L~~S~ql~~~~~~~------~~~~kvf~i~~~fR~E~~-~~~Hl~EF~~le~e~~~~~~~~lm~~~e~li~~~ 127 (179)
+.++||.......+-.+.. ...-+.-.+|+|||.|.+ +-.++.+|+|.|.-. +++-++..+..++++..+
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 3467887554443332222 223566779999999996 346999999999854 346666666666666443
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=97.27 E-value=0.00029 Score=61.11 Aligned_cols=104 Identities=10% Similarity=-0.083 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhc-cCC-ceeeecccccccc-ccccCCCceeccccccceeeeee-chhhhhhhh---h---h-cc
Q 030343 9 IFKTRSKIVSYIRRFLD-NLD-FLEVETPMMNMIA-GGAAARPFVTHHNDLNMKLYMRI-APELYLKEL---V---V-GG 77 (179)
Q Consensus 9 ~~~~rs~i~~~ir~ff~-~~g-F~ev~tP~l~~~~-~~~~~~~f~~~~~~~~~~~~L~~-S~ql~~~~~---~---~-~~ 77 (179)
-..+|+.|.+..+.-|. ++| +.||.||+...-. .|+ - +.|. .||+. +.|-++... + . .-
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH-~-------d~~~--~~LRPeTaqg~~~nfk~~~~s~r~~L 172 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPG-D-------SAFR--GGLRENLLHGALEHYVNCLDLVNKRL 172 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSS-C-------SCCT--TB-CSCSHHHHHHHTTTTTGGGTTBS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcc-h-------hhhc--ceECCCCChhHHHHHhhhhhhccccC
Confidence 35688889985555554 366 7779999954421 222 1 2222 67774 333332211 1 1 12
Q ss_pred chheeeccccccccc--CCC----CCCCCcchhhHHHhhcchhHHHHHHHHH
Q 030343 78 LDRVYEIGKQFRNEG--IDL----THNPEFTTCEFYMAFADYNDLMELTEKM 123 (179)
Q Consensus 78 ~~kvf~i~~~fR~E~--~~~----~Hl~EF~~le~e~~~~~~~~lm~~~e~l 123 (179)
.-++.+||+|||+|. +++ -+..||+|.|.+. |++-++..+..+.+
T Consensus 173 P~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~ 223 (459)
T 3ikl_A 173 PYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFW 223 (459)
T ss_dssp SEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHH
T ss_pred CeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHH
Confidence 468999999999995 232 4789999999974 44444433433333
No 70
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=97.13 E-value=0.00027 Score=61.20 Aligned_cols=117 Identities=15% Similarity=-0.002 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHh-h-ccCCceeeecccccccc---ccccCC-----Cce---------------eccccccceeee
Q 030343 8 QIFKTRSKIVSYIRRF-L-DNLDFLEVETPMMNMIA---GGAAAR-----PFV---------------THHNDLNMKLYM 62 (179)
Q Consensus 8 ~~~~~rs~i~~~ir~f-f-~~~gF~ev~tP~l~~~~---~~~~~~-----~f~---------------~~~~~~~~~~~L 62 (179)
.-.++++.|.+.+++- + .+.|+.||.||+|.+.. .....+ .+. .-...++.++||
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~L 139 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKL 139 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceee
Confidence 3467899999988877 4 58999999999998642 110001 010 000123456788
Q ss_pred ee--chhhhhh--hhh---h-ccchheeecccccc---cccCCC---CCCCCcchhhHHHhhcchhHHHHHHHHHHH
Q 030343 63 RI--APELYLK--ELV---V-GGLDRVYEIGKQFR---NEGIDL---THNPEFTTCEFYMAFADYNDLMELTEKMLS 125 (179)
Q Consensus 63 ~~--S~ql~~~--~~~---~-~~~~kvf~i~~~fR---~E~~~~---~Hl~EF~~le~e~~~~~~~~lm~~~e~li~ 125 (179)
+. ++..+.. ..+ . .-.-++++||+||| +|.+.. .+..||+|.|.+. |++.++..+..+.++.
T Consensus 140 RPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~ 215 (454)
T 1g5h_A 140 RATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLR 215 (454)
T ss_dssp CSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHH
Confidence 74 2222211 111 1 22579999999999 686432 5899999999985 5555555554444443
No 71
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.12 E-value=0.00046 Score=61.59 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhccCCceeeecccccccc-----cc---ccCCCceeccccccceeeeeechhhhhhhhhh----c-cch
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIA-----GG---AAARPFVTHHNDLNMKLYMRIAPELYLKELVV----G-GLD 79 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~-----~~---~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~-~~~ 79 (179)
.+.+.+.+|+.|...||.|+.|+.+++.. -+ ...+.+......-..-..||+|----+=..++ . ..-
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~v 472 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPL 472 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCce
Confidence 34668899999999999999999998632 11 01122322111112234667663222212232 1 136
Q ss_pred heeecccccccccCCCCCCCCcchhhHHHhhc--chhHHHHHHHHHHHhh
Q 030343 80 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFA--DYNDLMELTEKMLSGM 127 (179)
Q Consensus 80 kvf~i~~~fR~E~~~~~Hl~EF~~le~e~~~~--~~~~lm~~~e~li~~~ 127 (179)
|+|++|+|||.+..+..|.+|+.|+.+-+.+. ++.++...++.++..+
T Consensus 473 rlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 473 KLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998876677889999998866653 5888999888888654
No 72
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.04 E-value=0.00074 Score=62.28 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhccCCceeeeccccccccc-c---ccCC-Cceeccccccceeeeeechhhhhhhhhhc------cchhe
Q 030343 13 RSKIVSYIRRFLDNLDFLEVETPMMNMIAG-G---AAAR-PFVTHHNDLNMKLYMRIAPELYLKELVVG------GLDRV 81 (179)
Q Consensus 13 rs~i~~~ir~ff~~~gF~ev~tP~l~~~~~-~---~~~~-~f~~~~~~~~~~~~L~~S~ql~~~~~~~~------~~~kv 81 (179)
...+.+.+|+.|...||.|+.|..+++... . ...+ .+......-.....||+|----+-..++. ..-|+
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrl 574 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRL 574 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEE
Confidence 456788999999999999999988876421 1 1112 23221111122345665532222222321 23699
Q ss_pred eecccccccccCCCCCCCCcchhhHHHhh-------------cchhHHHHHHHHHHHhh
Q 030343 82 YEIGKQFRNEGIDLTHNPEFTTCEFYMAF-------------ADYNDLMELTEKMLSGM 127 (179)
Q Consensus 82 f~i~~~fR~E~~~~~Hl~EF~~le~e~~~-------------~~~~~lm~~~e~li~~~ 127 (179)
|++|+|||.+..+..| .|++|+.+-+.+ .++.|+...++.++..+
T Consensus 575 FEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 575 YEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999975543356 899999876655 46889999999999765
No 73
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=96.91 E-value=0.00078 Score=52.43 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccc----c--ccCCCceeccccccceeeeeechhhhhhhhhhc----cc--hhe
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAG----G--AAARPFVTHHNDLNMKLYMRIAPELYLKELVVG----GL--DRV 81 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~----~--~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~~----~~--~kv 81 (179)
.++.+.+|+.+...||.||-|-.+++... + .....+.....--..-..||+|----+=..++. +. -|+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 46788999999999999999999986321 0 001122221111123346777643322223332 22 489
Q ss_pred eecccccccccCCC------CCCCCcchhhHHHhh-------------cchhHHHHHHHHHHHhh
Q 030343 82 YEIGKQFRNEGIDL------THNPEFTTCEFYMAF-------------ADYNDLMELTEKMLSGM 127 (179)
Q Consensus 82 f~i~~~fR~E~~~~------~Hl~EF~~le~e~~~-------------~~~~~lm~~~e~li~~~ 127 (179)
|+||+||+.+..+. .+..|..++-+-+.+ .++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999865321 233566666554443 36889999999888765
No 74
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=96.72 E-value=0.0014 Score=50.98 Aligned_cols=114 Identities=13% Similarity=0.012 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccc----c--ccCCCceeccccccceeeeeechhhhhhhhhh----ccc--hhe
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAG----G--AAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGL--DRV 81 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~----~--~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~--~kv 81 (179)
.++.+.+|+.+...||.||-|-.+++... + .....+.....--..-..||+|--.-+=..++ .+. -++
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~l 86 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYL 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeE
Confidence 46788999999999999999999986321 0 00111222111122345777774332222232 232 489
Q ss_pred eecccccccccCCC------CCCCCcchhhHHHhh-------------cchhHHHHHHHHHHHhh
Q 030343 82 YEIGKQFRNEGIDL------THNPEFTTCEFYMAF-------------ADYNDLMELTEKMLSGM 127 (179)
Q Consensus 82 f~i~~~fR~E~~~~------~Hl~EF~~le~e~~~-------------~~~~~lm~~~e~li~~~ 127 (179)
|+||+||+.+..+. .+..|..++-+-+.+ .++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 87 FEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999765321 234555565544433 36889999999998765
No 75
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=95.53 E-value=0.016 Score=53.40 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccccc----ccccCCCceeccccccceeeeeechhhhhhhhhh-----c--cchh
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNMIA----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV-----G--GLDR 80 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~-----~--~~~k 80 (179)
-...+.+.+|+.|...||.|+-|-.+++.. -+...+.+......-.....||+|----+-..++ + .--|
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vr 569 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERAL 569 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeE
Confidence 356778999999999999999988887632 1101122332111112234666553222212222 1 3369
Q ss_pred eeecccccccccCCCCCCCCcchhhHHHhh------------cchhHHHHHHHHHHHhh
Q 030343 81 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAF------------ADYNDLMELTEKMLSGM 127 (179)
Q Consensus 81 vf~i~~~fR~E~~~~~Hl~EF~~le~e~~~------------~~~~~lm~~~e~li~~~ 127 (179)
+|++|+||| + .|+.|+.+-+.+ .++.|+...++.++..+
T Consensus 570 lFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 570 LFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999999999 2 677777765555 47889999999999865
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=90.28 E-value=0.13 Score=47.32 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=64.1
Q ss_pred HHHHHHHhhccCCceeeecccccccc----ccccCCCceeccccccceeeeeechhhhhhhhhh----cc--chheeecc
Q 030343 16 IVSYIRRFLDNLDFLEVETPMMNMIA----GGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GG--LDRVYEIG 85 (179)
Q Consensus 16 i~~~ir~ff~~~gF~ev~tP~l~~~~----~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~--~~kvf~i~ 85 (179)
..+.+|+.+...||.|+-|-.+++.. -+...+........-..--.||+|---.+=..++ .+ --++|++|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 573 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESG 573 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEee
Confidence 56789999999999999999998631 1111122222111122334677774333222222 22 25899999
Q ss_pred cccccccCCCCCCCCcchhhHHHh-------------hcchhHHHHHHHHHHHhh
Q 030343 86 KQFRNEGIDLTHNPEFTTCEFYMA-------------FADYNDLMELTEKMLSGM 127 (179)
Q Consensus 86 ~~fR~E~~~~~Hl~EF~~le~e~~-------------~~~~~~lm~~~e~li~~~ 127 (179)
+||+.+.....+..|-.++-+-+. ..++.|+...+|.++..+
T Consensus 574 ~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 574 LRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 999875432222223333322221 136889999999888754
No 77
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.99 E-value=17 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCC
Q 030343 5 EVRQIFKTRSKIVSYIRRFLDNLD 28 (179)
Q Consensus 5 ~~~~~~~~rs~i~~~ir~ff~~~g 28 (179)
-.+.+-+++..|+.++|.-|.++|
T Consensus 20 ~RkElqK~K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 20 VKKELQKVKEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677899999999999998876
No 78
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=33.20 E-value=53 Score=28.03 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh----ccchheeecccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRVYEIGKQFR 89 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kvf~i~~~fR 89 (179)
+.|-+.+-+||.++|-..|.+--|.+.. +-.+.++.|+....|-+.. ....|+-+..+|.|
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~---------------DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR 69 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHN---------------DPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVR 69 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSS---------------CTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCC---------------CCCceeecccchhhhhhhcCCCCCCCCCcccccccee
Confidence 4567778899999998888755554411 1122333344333332322 23578899999999
Q ss_pred c-------ccCC--CCCCCCcchhhHHHhhcc--hhHHHHHHHHHHH
Q 030343 90 N-------EGID--LTHNPEFTTCEFYMAFAD--YNDLMELTEKMLS 125 (179)
Q Consensus 90 ~-------E~~~--~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~ 125 (179)
. |+.+ ++|..=|-|+.- .+|.+ -++.+..+=+++.
T Consensus 70 ~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~LT 115 (441)
T 3hy0_A 70 AGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLLT 115 (441)
T ss_dssp EETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHhC
Confidence 7 3333 589999999865 33434 4677887777775
No 79
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=32.45 E-value=59 Score=27.93 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCceeeeccccccccccccCCCceeccccccceeeeeechhhhhhhhhh----ccchheeecccccc
Q 030343 14 SKIVSYIRRFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVV----GGLDRVYEIGKQFR 89 (179)
Q Consensus 14 s~i~~~ir~ff~~~gF~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~~~L~~S~ql~~~~~~~----~~~~kvf~i~~~fR 89 (179)
+.|-+.+-+||.++|-..|.+.-|.+-.. -.+.++.|+....|-... ....|+-...+|.|
T Consensus 6 ~eiR~~Fl~FF~~kgH~~vpSsslvp~~D---------------ptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiR 70 (465)
T 1yfs_A 6 HEIRELFLSFFEKKGHTRVKSAPLVPEND---------------PTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLR 70 (465)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSSCTTC---------------TTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcccCCC---------------CCcceeccchhhhhHHhcCCCCCCCCceeccccccc
Confidence 45667788899999999988666554210 111222233222222221 23578888999999
Q ss_pred cc-------cC--CCCCCCCcchhhHHHhhcc--hhHHHHHHHHHHHhh
Q 030343 90 NE-------GI--DLTHNPEFTTCEFYMAFAD--YNDLMELTEKMLSGM 127 (179)
Q Consensus 90 ~E-------~~--~~~Hl~EF~~le~e~~~~~--~~~lm~~~e~li~~~ 127 (179)
+. +. +++|..=|-|+.- .+|.+ -+|.+..+=+++...
T Consensus 71 ag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT~~ 118 (465)
T 1yfs_A 71 VSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVTEV 118 (465)
T ss_dssp EETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHHHT
T ss_pred cCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHHhh
Confidence 43 22 3589999999865 34444 577888888888654
No 80
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=26.66 E-value=33 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhc-cCCceeeeccccccccc
Q 030343 1 MLNVEVRQIFKTRSKIVSYIRRFLD-NLDFLEVETPMMNMIAG 42 (179)
Q Consensus 1 ~~~~~~~~~~~~rs~i~~~ir~ff~-~~gF~ev~tP~l~~~~~ 42 (179)
|+++..+..-..|..|+++..+-|. ++||..+..--|...+|
T Consensus 1 M~~~~~~~~~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Ag 43 (220)
T 3lsj_A 1 MASPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAG 43 (220)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHT
T ss_pred CCCccccchHhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhC
Confidence 4566666777899999999999999 99999999888766443
No 81
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=24.59 E-value=1e+02 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhccCCceeeecccccc
Q 030343 11 KTRSKIVSYIRRFLDNLDFLEVETPMMNM 39 (179)
Q Consensus 11 ~~rs~i~~~ir~ff~~~gF~ev~tP~l~~ 39 (179)
-.|..+++++.+|..++|+ ||.|.-
T Consensus 8 s~rPYLiRA~yeWi~DN~~----TP~l~V 32 (118)
T 1yfn_A 8 PRRPYLLRAFYEWLLDNQL----TPHLVV 32 (118)
T ss_dssp CSHHHHHHHHHHHHHHTTC----CEEEEE
T ss_pred CCccHHHHHHHHHHHcCCC----cceEEE
Confidence 4578899999999999999 787754
No 82
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=23.17 E-value=41 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccc
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNM 39 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~ 39 (179)
.|..+++++.+|..++|+ ||.|.-
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~V 31 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVV 31 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEE
T ss_pred CccHHHHHHHHHHHhCCC----cceEEE
Confidence 578899999999999999 777754
No 83
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=21.47 E-value=45 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhccCCceeeecccccc
Q 030343 12 TRSKIVSYIRRFLDNLDFLEVETPMMNM 39 (179)
Q Consensus 12 ~rs~i~~~ir~ff~~~gF~ev~tP~l~~ 39 (179)
.|..+++++.+|..++|+ ||.|.-
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~L~V 31 (129)
T 1ou9_A 8 KRPYLLRAYYDWLVDNSF----TPYLVV 31 (129)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEE
T ss_pred CchHHHHHHHHHHHhCCC----cceEEE
Confidence 478899999999999999 777754
No 84
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=20.54 E-value=93 Score=15.39 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 030343 114 NDLMELTEKMLSGMIKEIT 132 (179)
Q Consensus 114 ~~lm~~~e~li~~~~~~~~ 132 (179)
.|++..+-++++.+++.+.
T Consensus 3 ~DIisTIgdfvKlI~~TV~ 21 (26)
T 1dtc_A 3 QDIISTIGDLVKWIIDTVN 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4788888899998888765
Done!